1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Zahn, R.
Guntert, P.
Wuthrich, K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
326
225
10.1016/S0022-2836(02)01332-3
12547204
NMR Structure of a Variant Human Prion Protein with Two Disulfide Bridges
2003
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
13106.572
MAJOR PRION PROTEIN
RESIDUES 121-230
YES
1
man
polymer
PRP, PRION PROTEIN, PRP27-30, PRP33-35C
no
no
GSVVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPCDEYSNQNNFVHDCVNITIKQHTVTTTTKGENF
TETDVKMMERVVEQMCITQYERCSQAYYQRGS
GSVVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPCDEYSNQNNFVHDCVNITIKQHTVTTTTKGENF
TETDVKMMERVVEQMCITQYERCSQAYYQRGS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
9606
BRAIN
HOMO SAPIENS
469008
ESCHERICHIA COLI
BL21(DE3)
PRSET A
repository
Initial release
Atomic model
Derived calculations
Other
Structure summary
Version format compliance
1
0
2003-01-30
1
1
2013-05-15
HUMAN PRION PROTEIN (MUTANT E200K) FRAGMENT 90-231
HUMAN PRION PROTEIN MUTANT E200K FRAGMENT 90 -231
CRYSTAL STRUCTURE OF THE HUMAN PRION PROTEIN REVEALS AMECHANISM FOR OLIGOMERIZATION
HUMAN PRION PROTEIN
HUMAN PRION PROTEIN
HUMAN PRION PROTEIN FRAGMENT 90-230
HUMAN PRION PROTEIN FRAGMENT 90-230
HUMAN PRION PROTEIN FRAGMENT 121-230
HUMAN PRION PROTEIN FRAGMENT 121-230
HELIX
DETERMINATION METHOD: AUTHOR PROVIDED.
SHEET
DETERMINATION METHOD: AUTHOR PROVIDED.
PDBE
Y
PDBE
2002-06-24
REL
DISULFIDE BOND BETWEEN C166 AND C221
ENGINEERED MUTATION MET 166 CYS AND GLU 221 CYS CHAIN A
2 RESIDUES (GLY SER) INSERTED AT THE N-TERMINUS
MET166 AND GLU221 REPLACED AGAINST CYS
THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE SPECTROSCOPY ON 13C, 15N-LABELED PROTEIN
LEAST RESTRAINT VIOLATION
100
20
NOESY
COSY
0.01
M
4.5
pH
1
atm
293
K
torsion angle dynamics
2
KORADI, BILLETER, GUNTERT
refinement
OPALP
structure solution
DYANA
750
Bruker
DRX
GLY
119
n
1
GLY
119
A
SER
120
n
2
SER
120
A
VAL
121
n
3
VAL
121
A
VAL
122
n
4
VAL
122
A
GLY
123
n
5
GLY
123
A
GLY
124
n
6
GLY
124
A
LEU
125
n
7
LEU
125
A
GLY
126
n
8
GLY
126
A
GLY
127
n
9
GLY
127
A
TYR
128
n
10
TYR
128
A
MET
129
n
11
MET
129
A
LEU
130
n
12
LEU
130
A
GLY
131
n
13
GLY
131
A
SER
132
n
14
SER
132
A
ALA
133
n
15
ALA
133
A
MET
134
n
16
MET
134
A
SER
135
n
17
SER
135
A
ARG
136
n
18
ARG
136
A
PRO
137
n
19
PRO
137
A
ILE
138
n
20
ILE
138
A
ILE
139
n
21
ILE
139
A
HIS
140
n
22
HIS
140
A
PHE
141
n
23
PHE
141
A
GLY
142
n
24
GLY
142
A
SER
143
n
25
SER
143
A
ASP
144
n
26
ASP
144
A
TYR
145
n
27
TYR
145
A
GLU
146
n
28
GLU
146
A
ASP
147
n
29
ASP
147
A
ARG
148
n
30
ARG
148
A
TYR
149
n
31
TYR
149
A
TYR
150
n
32
TYR
150
A
ARG
151
n
33
ARG
151
A
GLU
152
n
34
GLU
152
A
ASN
153
n
35
ASN
153
A
MET
154
n
36
MET
154
A
HIS
155
n
37
HIS
155
A
ARG
156
n
38
ARG
156
A
TYR
157
n
39
TYR
157
A
PRO
158
n
40
PRO
158
A
ASN
159
n
41
ASN
159
A
GLN
160
n
42
GLN
160
A
VAL
161
n
43
VAL
161
A
TYR
162
n
44
TYR
162
A
TYR
163
n
45
TYR
163
A
ARG
164
n
46
ARG
164
A
PRO
165
n
47
PRO
165
A
CYS
166
n
48
CYS
166
A
ASP
167
n
49
ASP
167
A
GLU
168
n
50
GLU
168
A
TYR
169
n
51
TYR
169
A
SER
170
n
52
SER
170
A
ASN
171
n
53
ASN
171
A
GLN
172
n
54
GLN
172
A
ASN
173
n
55
ASN
173
A
ASN
174
n
56
ASN
174
A
PHE
175
n
57
PHE
175
A
VAL
176
n
58
VAL
176
A
HIS
177
n
59
HIS
177
A
ASP
178
n
60
ASP
178
A
CYS
179
n
61
CYS
179
A
VAL
180
n
62
VAL
180
A
ASN
181
n
63
ASN
181
A
ILE
182
n
64
ILE
182
A
THR
183
n
65
THR
183
A
ILE
184
n
66
ILE
184
A
LYS
185
n
67
LYS
185
A
GLN
186
n
68
GLN
186
A
HIS
187
n
69
HIS
187
A
THR
188
n
70
THR
188
A
VAL
189
n
71
VAL
189
A
THR
190
n
72
THR
190
A
THR
191
n
73
THR
191
A
THR
192
n
74
THR
192
A
THR
193
n
75
THR
193
A
LYS
194
n
76
LYS
194
A
GLY
195
n
77
GLY
195
A
GLU
196
n
78
GLU
196
A
ASN
197
n
79
ASN
197
A
PHE
198
n
80
PHE
198
A
THR
199
n
81
THR
199
A
GLU
200
n
82
GLU
200
A
THR
201
n
83
THR
201
A
ASP
202
n
84
ASP
202
A
VAL
203
n
85
VAL
203
A
LYS
204
n
86
LYS
204
A
MET
205
n
87
MET
205
A
MET
206
n
88
MET
206
A
GLU
207
n
89
GLU
207
A
ARG
208
n
90
ARG
208
A
VAL
209
n
91
VAL
209
A
VAL
210
n
92
VAL
210
A
GLU
211
n
93
GLU
211
A
GLN
212
n
94
GLN
212
A
MET
213
n
95
MET
213
A
CYS
214
n
96
CYS
214
A
ILE
215
n
97
ILE
215
A
THR
216
n
98
THR
216
A
GLN
217
n
99
GLN
217
A
TYR
218
n
100
TYR
218
A
GLU
219
n
101
GLU
219
A
ARG
220
n
102
ARG
220
A
CYS
221
n
103
CYS
221
A
SER
222
n
104
SER
222
A
GLN
223
n
105
GLN
223
A
ALA
224
n
106
ALA
224
A
TYR
225
n
107
TYR
225
A
TYR
226
n
108
TYR
226
A
GLN
227
n
109
GLN
227
A
ARG
228
n
110
ARG
228
A
GLY
229
n
111
GLY
229
A
SER
230
n
112
SER
230
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
161
A
O
VAL
43
A
N
TYR
128
A
N
TYR
10
2
A
A
HG
OE2
SER
GLU
143
146
1.58
5
A
A
HH
OD2
TYR
ASP
128
178
1.58
5
A
A
HG
OE1
SER
GLU
143
146
1.60
6
A
A
HG
OE2
SER
GLU
143
146
1.54
7
A
A
HH
OD1
TYR
ASP
149
202
1.56
7
A
A
HH
OD2
TYR
ASP
128
178
1.58
9
A
A
HH
OD1
TYR
ASP
149
202
1.60
11
A
A
HH
OD2
TYR
ASP
149
202
1.59
11
A
A
HG
OE2
SER
GLU
143
146
1.59
13
A
A
HH
OD2
TYR
ASP
128
178
1.58
15
A
A
HH
OD1
TYR
ASP
149
202
1.58
16
A
A
O
HG1
THR
THR
188
192
1.59
18
A
A
OE1
HH
GLU
TYR
168
218
1.57
1
A
A
GLY
SER
119
120
145.44
7
A
A
GLY
TYR
127
128
144.75
14
A
A
GLY
SER
229
230
147.62
17
A
A
GLY
SER
142
143
149.29
17
A
A
GLY
SER
229
230
142.39
18
A
A
GLY
SER
229
230
-149.73
1
A
ARG
148
0.086
SIDE CHAIN
1
A
ARG
151
0.084
SIDE CHAIN
1
A
ARG
164
0.102
SIDE CHAIN
1
A
TYR
218
0.090
SIDE CHAIN
1
A
TYR
225
0.064
SIDE CHAIN
1
A
ARG
228
0.124
SIDE CHAIN
2
A
TYR
128
0.065
SIDE CHAIN
2
A
TYR
163
0.091
SIDE CHAIN
2
A
ARG
164
0.120
SIDE CHAIN
2
A
TYR
226
0.069
SIDE CHAIN
3
A
ARG
148
0.126
SIDE CHAIN
3
A
ARG
156
0.078
SIDE CHAIN
3
A
TYR
163
0.081
SIDE CHAIN
3
A
ARG
220
0.079
SIDE CHAIN
3
A
ARG
228
0.105
SIDE CHAIN
4
A
ARG
151
0.077
SIDE CHAIN
4
A
PHE
175
0.096
SIDE CHAIN
4
A
ARG
208
0.167
SIDE CHAIN
5
A
TYR
150
0.087
SIDE CHAIN
5
A
ARG
164
0.182
SIDE CHAIN
5
A
PHE
175
0.081
SIDE CHAIN
5
A
ARG
208
0.102
SIDE CHAIN
6
A
ARG
148
0.102
SIDE CHAIN
7
A
ARG
148
0.076
SIDE CHAIN
7
A
ARG
156
0.111
SIDE CHAIN
7
A
TYR
218
0.149
SIDE CHAIN
8
A
ARG
148
0.096
SIDE CHAIN
8
A
TYR
150
0.115
SIDE CHAIN
8
A
TYR
169
0.079
SIDE CHAIN
8
A
PHE
175
0.087
SIDE CHAIN
10
A
ARG
148
0.094
SIDE CHAIN
11
A
TYR
163
0.069
SIDE CHAIN
11
A
ARG
164
0.113
SIDE CHAIN
12
A
TYR
128
0.074
SIDE CHAIN
12
A
ARG
151
0.142
SIDE CHAIN
12
A
TYR
163
0.104
SIDE CHAIN
12
A
TYR
218
0.090
SIDE CHAIN
13
A
ARG
148
0.102
SIDE CHAIN
13
A
TYR
149
0.082
SIDE CHAIN
13
A
TYR
150
0.121
SIDE CHAIN
13
A
ARG
164
0.082
SIDE CHAIN
14
A
ARG
136
0.076
SIDE CHAIN
14
A
ARG
148
0.125
SIDE CHAIN
14
A
TYR
149
0.083
SIDE CHAIN
14
A
TYR
162
0.068
SIDE CHAIN
14
A
TYR
169
0.065
SIDE CHAIN
14
A
ARG
208
0.217
SIDE CHAIN
15
A
ARG
148
0.116
SIDE CHAIN
15
A
TYR
226
0.070
SIDE CHAIN
17
A
TYR
163
0.108
SIDE CHAIN
17
A
ARG
164
0.089
SIDE CHAIN
17
A
TYR
218
0.115
SIDE CHAIN
18
A
ARG
136
0.092
SIDE CHAIN
18
A
PHE
141
0.094
SIDE CHAIN
18
A
TYR
149
0.094
SIDE CHAIN
18
A
ARG
208
0.090
SIDE CHAIN
18
A
ARG
220
0.084
SIDE CHAIN
19
A
TYR
157
0.068
SIDE CHAIN
19
A
ARG
228
0.089
SIDE CHAIN
20
A
ARG
148
0.078
SIDE CHAIN
20
A
ARG
208
0.109
SIDE CHAIN
3
8.70
1.40
123.60
132.30
A
A
A
CD
NE
CZ
ARG
ARG
ARG
164
164
164
N
3
3.35
0.50
120.30
123.65
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
164
164
164
N
4
9.09
1.40
123.60
132.69
A
A
A
CD
NE
CZ
ARG
ARG
ARG
164
164
164
N
4
3.28
0.50
120.30
123.58
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
164
164
164
N
5
6.68
1.10
114.20
120.88
A
A
A
CA
CB
SG
CYS
CYS
CYS
166
166
166
N
6
-3.63
0.60
121.00
117.37
A
A
A
CB
CG
CD2
TYR
TYR
TYR
226
226
226
N
7
3.22
0.50
120.30
123.52
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
208
208
208
N
8
9.10
1.10
114.20
123.30
A
A
A
CA
CB
SG
CYS
CYS
CYS
166
166
166
N
8
3.14
0.50
120.30
123.44
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
228
228
228
N
9
-3.71
0.60
121.00
117.29
A
A
A
CB
CG
CD2
TYR
TYR
TYR
226
226
226
N
12
3.04
0.50
120.30
123.34
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
148
148
148
N
14
8.84
1.40
123.60
132.44
A
A
A
CD
NE
CZ
ARG
ARG
ARG
164
164
164
N
18
-3.92
0.60
121.00
117.08
A
A
A
CB
CG
CD2
TYR
TYR
TYR
169
169
169
N
1
A
SER
120
86.52
112.92
1
A
VAL
122
70.25
152.69
1
A
TYR
128
44.17
172.18
1
A
ARG
148
-66.99
0.99
1
A
TYR
149
-93.28
-62.86
1
A
ASN
171
63.83
174.11
2
A
MET
134
-138.22
-154.27
2
A
ILE
138
52.46
79.72
2
A
PRO
165
-63.82
-174.84
2
A
TYR
169
-56.95
90.51
2
A
SER
170
-140.28
39.27
2
A
ASN
171
62.32
162.32
2
A
CYS
221
-50.90
-73.09
2
A
ARG
228
-80.42
-80.40
3
A
SER
120
67.35
161.94
3
A
ILE
138
53.44
73.02
3
A
ASP
147
-93.65
-62.21
3
A
TYR
169
-31.19
98.08
3
A
ASN
171
52.29
-171.63
3
A
PHE
198
-53.77
178.65
4
A
SER
132
49.26
178.40
4
A
ILE
138
49.32
73.74
4
A
CYS
166
-67.71
17.96
4
A
TYR
169
43.65
24.83
4
A
SER
170
-80.98
46.70
4
A
ASN
171
70.42
162.25
5
A
VAL
122
62.06
152.40
5
A
LEU
125
-89.19
-88.62
5
A
PRO
137
-69.88
6.40
5
A
ILE
138
37.06
72.29
5
A
GLU
168
-99.51
39.26
5
A
SER
170
-157.14
-46.36
5
A
ARG
228
-130.25
-68.62
6
A
SER
120
67.49
148.65
6
A
TYR
128
41.43
-169.48
6
A
ILE
138
50.02
77.20
6
A
GLU
168
-106.77
62.80
6
A
SER
170
-171.12
52.14
6
A
ASN
171
60.05
-179.96
7
A
VAL
121
58.23
175.59
7
A
VAL
122
67.06
152.44
7
A
MET
129
-112.99
-160.41
7
A
ILE
138
47.74
74.37
7
A
PRO
165
-67.27
-173.32
7
A
GLU
168
-69.50
-74.64
7
A
TYR
169
65.72
171.44
7
A
SER
170
66.60
-80.01
7
A
ASN
171
178.37
165.90
8
A
SER
120
47.42
23.62
8
A
ILE
138
44.49
72.15
8
A
ASN
159
-148.95
-6.51
8
A
TYR
169
46.42
-133.12
8
A
ASN
171
72.76
178.45
9
A
LEU
125
-114.76
-72.62
9
A
PRO
137
-66.26
5.98
9
A
ILE
138
55.54
79.68
9
A
ASP
147
-101.57
-68.30
9
A
TYR
169
-65.74
-134.25
9
A
SER
170
80.29
-48.38
9
A
ASN
171
177.11
152.53
10
A
LEU
125
-104.44
-72.67
10
A
TYR
128
44.79
176.71
10
A
SER
132
65.36
144.15
10
A
ILE
138
47.56
70.98
10
A
ASP
147
-108.38
-62.37
10
A
CYS
166
-64.45
9.05
10
A
TYR
169
-56.74
106.61
10
A
ASN
171
62.65
171.25
11
A
PRO
137
-69.14
5.06
11
A
ILE
138
48.99
71.10
11
A
TYR
169
38.02
31.64
11
A
ASN
171
143.96
174.27
12
A
LEU
125
-101.52
-74.35
12
A
TYR
128
44.87
-170.30
12
A
LEU
130
51.40
-176.37
12
A
ALA
133
-56.22
171.36
12
A
ILE
138
47.58
74.82
12
A
TYR
169
-66.06
75.21
12
A
ASN
171
57.72
177.18
12
A
ARG
228
-78.62
-73.00
13
A
VAL
122
65.86
143.25
13
A
ILE
138
39.97
77.72
13
A
ASP
147
-94.82
-69.71
13
A
CYS
166
-71.58
25.28
13
A
SER
170
143.92
-59.53
13
A
ARG
228
-93.32
-77.80
14
A
ILE
138
50.23
76.29
14
A
ARG
156
-141.47
23.92
14
A
TYR
163
-165.35
-168.17
14
A
CYS
166
-64.95
4.86
14
A
SER
170
-155.56
-40.20
14
A
ARG
228
-94.02
-91.53
15
A
SER
120
-63.46
90.62
15
A
MET
129
-96.72
-105.55
15
A
LEU
130
-172.26
130.85
15
A
ILE
138
52.38
75.86
15
A
ASN
159
-131.32
-34.99
15
A
TYR
169
-75.00
-169.10
15
A
SER
170
96.46
-33.37
15
A
GLN
172
-121.81
-50.12
15
A
ARG
228
-74.28
-84.87
16
A
MET
129
-123.90
-92.17
16
A
TYR
169
53.04
-134.78
16
A
ASN
171
82.69
-173.90
16
A
HIS
187
-69.83
2.66
16
A
ARG
208
-24.78
-62.06
16
A
ARG
228
-105.80
-98.52
17
A
SER
120
75.39
36.27
17
A
ASP
147
-106.08
-62.73
17
A
GLU
152
-57.30
-72.45
17
A
SER
170
-148.88
-62.00
18
A
SER
120
66.43
166.76
18
A
LEU
130
67.92
130.80
18
A
ALA
133
-66.19
-178.76
18
A
ILE
138
50.61
72.36
18
A
ASP
147
-94.58
-63.05
18
A
CYS
166
-74.82
22.97
18
A
GLU
168
-148.64
33.39
18
A
TYR
169
-62.67
78.43
18
A
SER
170
-145.65
25.69
18
A
ASN
171
92.35
149.32
19
A
LEU
125
-90.78
-89.47
19
A
MET
129
-127.72
-159.18
19
A
SER
170
-162.11
-24.80
19
A
GLN
172
-101.41
-60.73
19
A
ASN
197
-163.45
116.74
19
A
ARG
228
-108.62
-61.80
20
A
MET
129
-93.37
-106.35
20
A
ILE
138
57.58
74.84
20
A
GLU
168
-111.23
57.93
20
A
SER
170
178.28
-54.01
20
A
ASN
197
-162.97
116.77
20
A
ARG
228
-82.74
-85.63
MAJOR PRION PROTEIN
HUMAN PRION PROTEIN 121-230 M166C/E221C
1
N
N
A
ASP
144
A
ASP
26
HELX_P
A
MET
154
A
MET
36
1
H1
11
A
ASN
173
A
ASN
55
HELX_P
A
LYS
194
A
LYS
76
1
H2
22
A
GLU
200
A
GLU
82
HELX_P
A
ARG
228
A
ARG
110
1
H3
29
disulf
2.037
A
CYS
166
A
SG
CYS
48
1_555
A
CYS
221
A
SG
CYS
103
1_555
disulf
2.027
A
CYS
179
A
SG
CYS
61
1_555
A
CYS
214
A
SG
CYS
96
1_555
CELL CYCLE
CELL CYCLE, BRAIN, GLYCOPROTEIN, GPI-ANCHOR, POLYMORPHISM, DISEASE MUTATION
1H0L
PDB
1
1H0L
PRIO_HUMAN
UNP
1
P04156
119
120
1H0L
119
120
1H0L
A
1
1
2
121
230
1H0L
121
230
P04156
A
2
3
112
1
MET
engineered mutation
CYS
166
1H0L
A
P04156
UNP
166
48
1
GLU
engineered mutation
CYS
221
1H0L
A
P04156
UNP
221
103
2
anti-parallel
A
TYR
128
A
TYR
10
A
GLY
131
A
GLY
13
A
VAL
161
A
VAL
43
A
ARG
164
A
ARG
46
1
P 1