1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Wahlberg, E. Lendel, C. Helgstrand, M. Allard, P. Dincbas-Renqvist, V. Hedqvist, A. Berglund, H. Nygren, P.-A. Hard, T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 100 3185 3190 10.1073/PNAS.0436086100 12594333 An Affibody in Complex with a Target Protein: Structure and Coupled Folding 2003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 6648.316 IMMUNOGLOBULIN G BINDING PROTEIN A RESIDUES 213-269 1 man polymer 6447.263 ZSPA-1 AFFIBODY 1 man polymer IGG BINDING PROTEIN A no no VDNKFNKEQQNAFYEILHLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKKLNDAQAPK VDNKFNKEQQNAFYEILHLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKKLNDAQAPK A polypeptide(L) no no VDNKFNKELSVAGREIVTLPNLNDPQKKAFIFSLWDDPSQSANLLAEAKKLNDAQAPK VDNKFNKELSVAGREIVTLPNLNDPQKKAFIFSLWDDPSQSANLLAEAKKLNDAQAPK B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1280 STAPHYLOCOCCUS AUREUS 469008 ESCHERICHIA COLI BL21(DE3) PET28A(+) sample 32630 SYNTHETIC CONSTRUCT 469008 ESCHERICHIA COLI BL21(DE3) PET28A(+) citation repository Initial release Derived calculations Other Source and taxonomy Version format compliance Database references 1 0 2003-02-27 1 1 2016-12-21 1 2 2018-01-17 _citation.page_last CRYSTAL STRUCTURE AT 2.7A RESOLUTION OF A COMPLEX BETWEEN A STAPHYLOCOCCUS AUREUS DOMAIN AND A FAB FRAGMENT OF A HUMAN IGM ANTIBODY HELIX DETERMINATION METHOD: AUTHOR PROVIDED. PDBE Y PDBE 2002-06-27 REL THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY ON 13C, 15N-LABELED PROTEINS. ONE OF THE SUBUNITS WAS LABELED THE OTHER SUBUNIT WAS KEPT UNLABELED. LEAST RESTRAINT VIOLATION AND GOOD RAMACHANDRAN PLOTS 100 40 5.6 pH 1 atm 303 K REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. SIMULATED ANEALING 1 BRUNGER refinement X-PLOR_NIH structure solution XWIN-NMR structure solution NMR-PIPE structure solution ANSIG FOR WINDOWS WINDOWS structure solution XPLOR 500 Bruker Avance 600 Bruker Avance 800 Varian INOVA VAL 1 n 1 VAL 1 A ASP 2 n 2 ASP 2 A ASN 3 n 3 ASN 3 A LYS 4 n 4 LYS 4 A PHE 5 n 5 PHE 5 A ASN 6 n 6 ASN 6 A LYS 7 n 7 LYS 7 A GLU 8 n 8 GLU 8 A GLN 9 n 9 GLN 9 A GLN 10 n 10 GLN 10 A ASN 11 n 11 ASN 11 A ALA 12 n 12 ALA 12 A PHE 13 n 13 PHE 13 A TYR 14 n 14 TYR 14 A GLU 15 n 15 GLU 15 A ILE 16 n 16 ILE 16 A LEU 17 n 17 LEU 17 A HIS 18 n 18 HIS 18 A LEU 19 n 19 LEU 19 A PRO 20 n 20 PRO 20 A ASN 21 n 21 ASN 21 A LEU 22 n 22 LEU 22 A ASN 23 n 23 ASN 23 A GLU 24 n 24 GLU 24 A GLU 25 n 25 GLU 25 A GLN 26 n 26 GLN 26 A ARG 27 n 27 ARG 27 A ASN 28 n 28 ASN 28 A ALA 29 n 29 ALA 29 A PHE 30 n 30 PHE 30 A ILE 31 n 31 ILE 31 A GLN 32 n 32 GLN 32 A SER 33 n 33 SER 33 A LEU 34 n 34 LEU 34 A LYS 35 n 35 LYS 35 A ASP 36 n 36 ASP 36 A ASP 37 n 37 ASP 37 A PRO 38 n 38 PRO 38 A SER 39 n 39 SER 39 A GLN 40 n 40 GLN 40 A SER 41 n 41 SER 41 A ALA 42 n 42 ALA 42 A ASN 43 n 43 ASN 43 A LEU 44 n 44 LEU 44 A LEU 45 n 45 LEU 45 A ALA 46 n 46 ALA 46 A GLU 47 n 47 GLU 47 A ALA 48 n 48 ALA 48 A LYS 49 n 49 LYS 49 A LYS 50 n 50 LYS 50 A LEU 51 n 51 LEU 51 A ASN 52 n 52 ASN 52 A ASP 53 n 53 ASP 53 A ALA 54 n 54 ALA 54 A GLN 55 n 55 GLN 55 A ALA 56 n 56 ALA 56 A PRO 57 n 57 PRO 57 A LYS 58 n 58 LYS 58 A VAL 1 n 1 VAL 1 B ASP 2 n 2 ASP 2 B ASN 3 n 3 ASN 3 B LYS 4 n 4 LYS 4 B PHE 5 n 5 PHE 5 B ASN 6 n 6 ASN 6 B LYS 7 n 7 LYS 7 B GLU 8 n 8 GLU 8 B LEU 9 n 9 LEU 9 B SER 10 n 10 SER 10 B VAL 11 n 11 VAL 11 B ALA 12 n 12 ALA 12 B GLY 13 n 13 GLY 13 B ARG 14 n 14 ARG 14 B GLU 15 n 15 GLU 15 B ILE 16 n 16 ILE 16 B VAL 17 n 17 VAL 17 B THR 18 n 18 THR 18 B LEU 19 n 19 LEU 19 B PRO 20 n 20 PRO 20 B ASN 21 n 21 ASN 21 B LEU 22 n 22 LEU 22 B ASN 23 n 23 ASN 23 B ASP 24 n 24 ASP 24 B PRO 25 n 25 PRO 25 B GLN 26 n 26 GLN 26 B LYS 27 n 27 LYS 27 B LYS 28 n 28 LYS 28 B ALA 29 n 29 ALA 29 B PHE 30 n 30 PHE 30 B ILE 31 n 31 ILE 31 B PHE 32 n 32 PHE 32 B SER 33 n 33 SER 33 B LEU 34 n 34 LEU 34 B TRP 35 n 35 TRP 35 B ASP 36 n 36 ASP 36 B ASP 37 n 37 ASP 37 B PRO 38 n 38 PRO 38 B SER 39 n 39 SER 39 B GLN 40 n 40 GLN 40 B SER 41 n 41 SER 41 B ALA 42 n 42 ALA 42 B ASN 43 n 43 ASN 43 B LEU 44 n 44 LEU 44 B LEU 45 n 45 LEU 45 B ALA 46 n 46 ALA 46 B GLU 47 n 47 GLU 47 B ALA 48 n 48 ALA 48 B LYS 49 n 49 LYS 49 B LYS 50 n 50 LYS 50 B LEU 51 n 51 LEU 51 B ASN 52 n 52 ASN 52 B ASP 53 n 53 ASP 53 B ALA 54 n 54 ALA 54 B GLN 55 n 55 GLN 55 B ALA 56 n 56 ALA 56 B PRO 57 n 57 PRO 57 B LYS 58 n 58 LYS 58 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 18 A A O H LYS ASN 7 11 1.58 19 A A O H LYS ASN 7 11 1.60 21 A A O H LYS ASN 7 11 1.59 22 A A O H LYS ASN 7 11 1.59 24 A A O H GLN PHE 9 13 1.59 25 A A O H GLN PHE 9 13 1.57 29 A A O H LYS ASN 7 11 1.59 31 A A O H LYS ASN 7 11 1.59 37 A A O H LYS ASN 7 11 1.53 40 A A O H LYS ASN 7 11 1.59 1 A ARG 27 0.209 SIDE CHAIN 1 B ARG 14 0.300 SIDE CHAIN 2 A ARG 27 0.125 SIDE CHAIN 2 B ARG 14 0.306 SIDE CHAIN 3 A ARG 27 0.274 SIDE CHAIN 3 B ARG 14 0.315 SIDE CHAIN 4 A ARG 27 0.259 SIDE CHAIN 4 B ARG 14 0.304 SIDE CHAIN 5 A ARG 27 0.268 SIDE CHAIN 5 B ARG 14 0.314 SIDE CHAIN 6 A ARG 27 0.307 SIDE CHAIN 6 B ARG 14 0.316 SIDE CHAIN 7 A ARG 27 0.202 SIDE CHAIN 7 B ARG 14 0.315 SIDE CHAIN 8 A ARG 27 0.246 SIDE CHAIN 8 B ARG 14 0.307 SIDE CHAIN 9 A ARG 27 0.217 SIDE CHAIN 9 B ARG 14 0.309 SIDE CHAIN 10 A ARG 27 0.267 SIDE CHAIN 10 B ARG 14 0.314 SIDE CHAIN 11 A ARG 27 0.207 SIDE CHAIN 11 B ARG 14 0.308 SIDE CHAIN 12 A ARG 27 0.168 SIDE CHAIN 12 B ARG 14 0.164 SIDE CHAIN 13 A ARG 27 0.126 SIDE CHAIN 13 B ARG 14 0.312 SIDE CHAIN 14 A ARG 27 0.213 SIDE CHAIN 14 B ARG 14 0.314 SIDE CHAIN 15 A ARG 27 0.215 SIDE CHAIN 15 B ARG 14 0.295 SIDE CHAIN 16 A ARG 27 0.197 SIDE CHAIN 16 B ARG 14 0.307 SIDE CHAIN 17 A ARG 27 0.104 SIDE CHAIN 17 B ARG 14 0.315 SIDE CHAIN 18 A ARG 27 0.150 SIDE CHAIN 18 B ARG 14 0.314 SIDE CHAIN 19 A ARG 27 0.250 SIDE CHAIN 19 B ARG 14 0.315 SIDE CHAIN 20 A ARG 27 0.207 SIDE CHAIN 20 B ARG 14 0.302 SIDE CHAIN 21 A ARG 27 0.225 SIDE CHAIN 21 B ARG 14 0.311 SIDE CHAIN 22 A ARG 27 0.233 SIDE CHAIN 22 B ARG 14 0.314 SIDE CHAIN 23 A ARG 27 0.218 SIDE CHAIN 23 B ARG 14 0.308 SIDE CHAIN 24 B ARG 14 0.308 SIDE CHAIN 25 A ARG 27 0.216 SIDE CHAIN 25 B ARG 14 0.313 SIDE CHAIN 26 A ARG 27 0.204 SIDE CHAIN 26 B ARG 14 0.270 SIDE CHAIN 27 A ARG 27 0.218 SIDE CHAIN 27 B ARG 14 0.255 SIDE CHAIN 28 A ARG 27 0.312 SIDE CHAIN 28 B ARG 14 0.314 SIDE CHAIN 29 A ARG 27 0.295 SIDE CHAIN 29 B ARG 14 0.314 SIDE CHAIN 30 A ARG 27 0.114 SIDE CHAIN 30 B ARG 14 0.316 SIDE CHAIN 31 A ARG 27 0.257 SIDE CHAIN 31 B ARG 14 0.293 SIDE CHAIN 32 A ARG 27 0.212 SIDE CHAIN 32 B ARG 14 0.300 SIDE CHAIN 33 A ARG 27 0.259 SIDE CHAIN 33 B ARG 14 0.275 SIDE CHAIN 34 A ARG 27 0.195 SIDE CHAIN 34 B ARG 14 0.303 SIDE CHAIN 35 A ARG 27 0.254 SIDE CHAIN 35 B ARG 14 0.288 SIDE CHAIN 36 A ARG 27 0.226 SIDE CHAIN 36 B ARG 14 0.299 SIDE CHAIN 37 A ARG 27 0.246 SIDE CHAIN 37 B ARG 14 0.313 SIDE CHAIN 38 A ARG 27 0.202 SIDE CHAIN 38 B ARG 14 0.283 SIDE CHAIN 39 A ARG 27 0.203 SIDE CHAIN 39 B ARG 14 0.305 SIDE CHAIN 40 A ARG 27 0.224 SIDE CHAIN 40 B ARG 14 0.309 SIDE CHAIN 2 B LYS 4 -158.40 42.27 3 A LYS 4 -100.16 -77.54 4 A LYS 4 -156.08 -38.90 4 B ASN 3 -107.03 71.02 4 B THR 18 -145.07 42.48 6 B PHE 5 -93.00 46.94 8 A LYS 4 -94.29 -74.74 9 B PHE 5 -91.19 43.83 10 B ASN 3 -104.80 67.89 10 B THR 18 -144.50 41.78 11 B PHE 5 -98.70 31.69 13 A ASP 2 -136.62 -56.68 14 B THR 18 -142.82 33.77 15 A ASN 23 51.68 -166.13 15 B LYS 4 -91.32 47.18 16 B PHE 5 -97.30 53.55 17 B LYS 4 -149.06 -41.85 17 B PHE 5 -58.05 98.38 18 A LYS 4 -99.74 -79.27 18 B PHE 5 -104.59 50.77 18 B THR 18 -140.36 39.11 20 B PHE 5 -97.27 38.96 20 B THR 18 -140.20 37.67 21 B ASN 3 -105.69 58.97 22 A LYS 4 -164.97 -67.66 22 B PHE 5 -99.13 30.47 22 B THR 18 -140.01 38.42 24 B ASN 6 -135.39 -43.65 25 A ASN 3 -99.17 -67.30 25 A LYS 4 -148.00 -46.36 26 A LYS 4 -135.36 -46.52 26 B ASN 3 -100.35 48.48 26 B PHE 5 -86.36 36.92 28 B PHE 5 -100.80 53.44 29 A PHE 5 -141.56 -41.54 29 B THR 18 -141.04 35.36 30 B THR 18 -145.06 37.96 31 B ASN 3 -110.99 59.78 32 B LYS 4 -103.32 63.89 33 A ASP 2 -120.14 -168.73 33 A LYS 4 -80.29 -75.24 33 B ASN 3 -109.79 49.62 33 B LYS 4 55.24 86.99 33 B PHE 5 -85.85 42.52 34 A LYS 4 -77.18 -74.19 35 A ASN 3 -92.96 -62.81 35 A LYS 4 -151.78 -56.65 35 B ASN 3 57.59 89.14 37 A ASN 23 -115.52 -165.87 38 A LYS 4 -144.12 -61.78 38 B THR 18 -141.93 37.55 39 B THR 18 -140.63 37.64 IMMUNOGLOBULIN G BINDING PROTEIN A, ZSPA-1 AFFIBODY An affibody in complex with a target protein: structure and coupled folding 1 N N 2 N N A LYS 4 A LYS 4 HELX_P A HIS 18 A HIS 18 1 1 15 A GLU 24 A GLU 24 HELX_P A ASP 36 A ASP 36 1 2 13 A SER 41 A SER 41 HELX_P A ALA 54 A ALA 54 1 3 14 B ASN 6 B ASN 6 HELX_P B THR 18 B THR 18 1 4 13 B ASP 24 B ASP 24 HELX_P B ASP 36 B ASP 36 1 5 13 B PRO 38 B PRO 38 HELX_P B GLN 40 B GLN 40 5 6 3 B SER 41 B SER 41 HELX_P B GLN 55 B GLN 55 1 7 15 IMMUNE SYSTEM IMMUNE SYSTEM, PROTEIN-PROTEIN INTERACTIONS, PROTEIN ENGINEERING, MOLECULAR RECOGNITION, NMR SPECTROSCOPY, MOLTEN GLOBULE, INDUCED FIT, COUPLED PROTEIN FOLDING, AFFIBODY, IGG BINDING PROTEIN A 1H0T PDB 1 1H0T SPA1_STAAU UNP 1 P02976 1H0T PDB 2 1H0T 1 1 1H0T 1 1 1H0T A 1 1 1 213 269 1H0T 2 58 P02976 A 2 2 58 1 58 1H0T 1 58 1H0T B 3 1 58 1 P 1