1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Wahlberg, E.
Lendel, C.
Helgstrand, M.
Allard, P.
Dincbas-Renqvist, V.
Hedqvist, A.
Berglund, H.
Nygren, P.-A.
Hard, T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
100
3185
3190
10.1073/PNAS.0436086100
12594333
An Affibody in Complex with a Target Protein: Structure and Coupled Folding
2003
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
6648.316
IMMUNOGLOBULIN G BINDING PROTEIN A
RESIDUES 213-269
1
man
polymer
6447.263
ZSPA-1 AFFIBODY
1
man
polymer
IGG BINDING PROTEIN A
no
no
VDNKFNKEQQNAFYEILHLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKKLNDAQAPK
VDNKFNKEQQNAFYEILHLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKKLNDAQAPK
A
polypeptide(L)
no
no
VDNKFNKELSVAGREIVTLPNLNDPQKKAFIFSLWDDPSQSANLLAEAKKLNDAQAPK
VDNKFNKELSVAGREIVTLPNLNDPQKKAFIFSLWDDPSQSANLLAEAKKLNDAQAPK
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1280
STAPHYLOCOCCUS AUREUS
469008
ESCHERICHIA COLI
BL21(DE3)
PET28A(+)
sample
32630
SYNTHETIC CONSTRUCT
469008
ESCHERICHIA COLI
BL21(DE3)
PET28A(+)
citation
repository
Initial release
Derived calculations
Other
Source and taxonomy
Version format compliance
Database references
1
0
2003-02-27
1
1
2016-12-21
1
2
2018-01-17
_citation.page_last
CRYSTAL STRUCTURE AT 2.7A RESOLUTION OF A COMPLEX BETWEEN A STAPHYLOCOCCUS AUREUS DOMAIN AND A FAB FRAGMENT OF A HUMAN IGM ANTIBODY
HELIX
DETERMINATION METHOD: AUTHOR PROVIDED.
PDBE
Y
PDBE
2002-06-27
REL
THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY ON 13C, 15N-LABELED PROTEINS. ONE OF THE SUBUNITS WAS LABELED THE OTHER SUBUNIT WAS KEPT UNLABELED.
LEAST RESTRAINT VIOLATION AND GOOD RAMACHANDRAN PLOTS
100
40
5.6
pH
1
atm
303
K
REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE.
SIMULATED ANEALING
1
BRUNGER
refinement
X-PLOR_NIH
structure solution
XWIN-NMR
structure solution
NMR-PIPE
structure solution
ANSIG FOR WINDOWS
WINDOWS
structure solution
XPLOR
500
Bruker
Avance
600
Bruker
Avance
800
Varian
INOVA
VAL
1
n
1
VAL
1
A
ASP
2
n
2
ASP
2
A
ASN
3
n
3
ASN
3
A
LYS
4
n
4
LYS
4
A
PHE
5
n
5
PHE
5
A
ASN
6
n
6
ASN
6
A
LYS
7
n
7
LYS
7
A
GLU
8
n
8
GLU
8
A
GLN
9
n
9
GLN
9
A
GLN
10
n
10
GLN
10
A
ASN
11
n
11
ASN
11
A
ALA
12
n
12
ALA
12
A
PHE
13
n
13
PHE
13
A
TYR
14
n
14
TYR
14
A
GLU
15
n
15
GLU
15
A
ILE
16
n
16
ILE
16
A
LEU
17
n
17
LEU
17
A
HIS
18
n
18
HIS
18
A
LEU
19
n
19
LEU
19
A
PRO
20
n
20
PRO
20
A
ASN
21
n
21
ASN
21
A
LEU
22
n
22
LEU
22
A
ASN
23
n
23
ASN
23
A
GLU
24
n
24
GLU
24
A
GLU
25
n
25
GLU
25
A
GLN
26
n
26
GLN
26
A
ARG
27
n
27
ARG
27
A
ASN
28
n
28
ASN
28
A
ALA
29
n
29
ALA
29
A
PHE
30
n
30
PHE
30
A
ILE
31
n
31
ILE
31
A
GLN
32
n
32
GLN
32
A
SER
33
n
33
SER
33
A
LEU
34
n
34
LEU
34
A
LYS
35
n
35
LYS
35
A
ASP
36
n
36
ASP
36
A
ASP
37
n
37
ASP
37
A
PRO
38
n
38
PRO
38
A
SER
39
n
39
SER
39
A
GLN
40
n
40
GLN
40
A
SER
41
n
41
SER
41
A
ALA
42
n
42
ALA
42
A
ASN
43
n
43
ASN
43
A
LEU
44
n
44
LEU
44
A
LEU
45
n
45
LEU
45
A
ALA
46
n
46
ALA
46
A
GLU
47
n
47
GLU
47
A
ALA
48
n
48
ALA
48
A
LYS
49
n
49
LYS
49
A
LYS
50
n
50
LYS
50
A
LEU
51
n
51
LEU
51
A
ASN
52
n
52
ASN
52
A
ASP
53
n
53
ASP
53
A
ALA
54
n
54
ALA
54
A
GLN
55
n
55
GLN
55
A
ALA
56
n
56
ALA
56
A
PRO
57
n
57
PRO
57
A
LYS
58
n
58
LYS
58
A
VAL
1
n
1
VAL
1
B
ASP
2
n
2
ASP
2
B
ASN
3
n
3
ASN
3
B
LYS
4
n
4
LYS
4
B
PHE
5
n
5
PHE
5
B
ASN
6
n
6
ASN
6
B
LYS
7
n
7
LYS
7
B
GLU
8
n
8
GLU
8
B
LEU
9
n
9
LEU
9
B
SER
10
n
10
SER
10
B
VAL
11
n
11
VAL
11
B
ALA
12
n
12
ALA
12
B
GLY
13
n
13
GLY
13
B
ARG
14
n
14
ARG
14
B
GLU
15
n
15
GLU
15
B
ILE
16
n
16
ILE
16
B
VAL
17
n
17
VAL
17
B
THR
18
n
18
THR
18
B
LEU
19
n
19
LEU
19
B
PRO
20
n
20
PRO
20
B
ASN
21
n
21
ASN
21
B
LEU
22
n
22
LEU
22
B
ASN
23
n
23
ASN
23
B
ASP
24
n
24
ASP
24
B
PRO
25
n
25
PRO
25
B
GLN
26
n
26
GLN
26
B
LYS
27
n
27
LYS
27
B
LYS
28
n
28
LYS
28
B
ALA
29
n
29
ALA
29
B
PHE
30
n
30
PHE
30
B
ILE
31
n
31
ILE
31
B
PHE
32
n
32
PHE
32
B
SER
33
n
33
SER
33
B
LEU
34
n
34
LEU
34
B
TRP
35
n
35
TRP
35
B
ASP
36
n
36
ASP
36
B
ASP
37
n
37
ASP
37
B
PRO
38
n
38
PRO
38
B
SER
39
n
39
SER
39
B
GLN
40
n
40
GLN
40
B
SER
41
n
41
SER
41
B
ALA
42
n
42
ALA
42
B
ASN
43
n
43
ASN
43
B
LEU
44
n
44
LEU
44
B
LEU
45
n
45
LEU
45
B
ALA
46
n
46
ALA
46
B
GLU
47
n
47
GLU
47
B
ALA
48
n
48
ALA
48
B
LYS
49
n
49
LYS
49
B
LYS
50
n
50
LYS
50
B
LEU
51
n
51
LEU
51
B
ASN
52
n
52
ASN
52
B
ASP
53
n
53
ASP
53
B
ALA
54
n
54
ALA
54
B
GLN
55
n
55
GLN
55
B
ALA
56
n
56
ALA
56
B
PRO
57
n
57
PRO
57
B
LYS
58
n
58
LYS
58
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
18
A
A
O
H
LYS
ASN
7
11
1.58
19
A
A
O
H
LYS
ASN
7
11
1.60
21
A
A
O
H
LYS
ASN
7
11
1.59
22
A
A
O
H
LYS
ASN
7
11
1.59
24
A
A
O
H
GLN
PHE
9
13
1.59
25
A
A
O
H
GLN
PHE
9
13
1.57
29
A
A
O
H
LYS
ASN
7
11
1.59
31
A
A
O
H
LYS
ASN
7
11
1.59
37
A
A
O
H
LYS
ASN
7
11
1.53
40
A
A
O
H
LYS
ASN
7
11
1.59
1
A
ARG
27
0.209
SIDE CHAIN
1
B
ARG
14
0.300
SIDE CHAIN
2
A
ARG
27
0.125
SIDE CHAIN
2
B
ARG
14
0.306
SIDE CHAIN
3
A
ARG
27
0.274
SIDE CHAIN
3
B
ARG
14
0.315
SIDE CHAIN
4
A
ARG
27
0.259
SIDE CHAIN
4
B
ARG
14
0.304
SIDE CHAIN
5
A
ARG
27
0.268
SIDE CHAIN
5
B
ARG
14
0.314
SIDE CHAIN
6
A
ARG
27
0.307
SIDE CHAIN
6
B
ARG
14
0.316
SIDE CHAIN
7
A
ARG
27
0.202
SIDE CHAIN
7
B
ARG
14
0.315
SIDE CHAIN
8
A
ARG
27
0.246
SIDE CHAIN
8
B
ARG
14
0.307
SIDE CHAIN
9
A
ARG
27
0.217
SIDE CHAIN
9
B
ARG
14
0.309
SIDE CHAIN
10
A
ARG
27
0.267
SIDE CHAIN
10
B
ARG
14
0.314
SIDE CHAIN
11
A
ARG
27
0.207
SIDE CHAIN
11
B
ARG
14
0.308
SIDE CHAIN
12
A
ARG
27
0.168
SIDE CHAIN
12
B
ARG
14
0.164
SIDE CHAIN
13
A
ARG
27
0.126
SIDE CHAIN
13
B
ARG
14
0.312
SIDE CHAIN
14
A
ARG
27
0.213
SIDE CHAIN
14
B
ARG
14
0.314
SIDE CHAIN
15
A
ARG
27
0.215
SIDE CHAIN
15
B
ARG
14
0.295
SIDE CHAIN
16
A
ARG
27
0.197
SIDE CHAIN
16
B
ARG
14
0.307
SIDE CHAIN
17
A
ARG
27
0.104
SIDE CHAIN
17
B
ARG
14
0.315
SIDE CHAIN
18
A
ARG
27
0.150
SIDE CHAIN
18
B
ARG
14
0.314
SIDE CHAIN
19
A
ARG
27
0.250
SIDE CHAIN
19
B
ARG
14
0.315
SIDE CHAIN
20
A
ARG
27
0.207
SIDE CHAIN
20
B
ARG
14
0.302
SIDE CHAIN
21
A
ARG
27
0.225
SIDE CHAIN
21
B
ARG
14
0.311
SIDE CHAIN
22
A
ARG
27
0.233
SIDE CHAIN
22
B
ARG
14
0.314
SIDE CHAIN
23
A
ARG
27
0.218
SIDE CHAIN
23
B
ARG
14
0.308
SIDE CHAIN
24
B
ARG
14
0.308
SIDE CHAIN
25
A
ARG
27
0.216
SIDE CHAIN
25
B
ARG
14
0.313
SIDE CHAIN
26
A
ARG
27
0.204
SIDE CHAIN
26
B
ARG
14
0.270
SIDE CHAIN
27
A
ARG
27
0.218
SIDE CHAIN
27
B
ARG
14
0.255
SIDE CHAIN
28
A
ARG
27
0.312
SIDE CHAIN
28
B
ARG
14
0.314
SIDE CHAIN
29
A
ARG
27
0.295
SIDE CHAIN
29
B
ARG
14
0.314
SIDE CHAIN
30
A
ARG
27
0.114
SIDE CHAIN
30
B
ARG
14
0.316
SIDE CHAIN
31
A
ARG
27
0.257
SIDE CHAIN
31
B
ARG
14
0.293
SIDE CHAIN
32
A
ARG
27
0.212
SIDE CHAIN
32
B
ARG
14
0.300
SIDE CHAIN
33
A
ARG
27
0.259
SIDE CHAIN
33
B
ARG
14
0.275
SIDE CHAIN
34
A
ARG
27
0.195
SIDE CHAIN
34
B
ARG
14
0.303
SIDE CHAIN
35
A
ARG
27
0.254
SIDE CHAIN
35
B
ARG
14
0.288
SIDE CHAIN
36
A
ARG
27
0.226
SIDE CHAIN
36
B
ARG
14
0.299
SIDE CHAIN
37
A
ARG
27
0.246
SIDE CHAIN
37
B
ARG
14
0.313
SIDE CHAIN
38
A
ARG
27
0.202
SIDE CHAIN
38
B
ARG
14
0.283
SIDE CHAIN
39
A
ARG
27
0.203
SIDE CHAIN
39
B
ARG
14
0.305
SIDE CHAIN
40
A
ARG
27
0.224
SIDE CHAIN
40
B
ARG
14
0.309
SIDE CHAIN
2
B
LYS
4
-158.40
42.27
3
A
LYS
4
-100.16
-77.54
4
A
LYS
4
-156.08
-38.90
4
B
ASN
3
-107.03
71.02
4
B
THR
18
-145.07
42.48
6
B
PHE
5
-93.00
46.94
8
A
LYS
4
-94.29
-74.74
9
B
PHE
5
-91.19
43.83
10
B
ASN
3
-104.80
67.89
10
B
THR
18
-144.50
41.78
11
B
PHE
5
-98.70
31.69
13
A
ASP
2
-136.62
-56.68
14
B
THR
18
-142.82
33.77
15
A
ASN
23
51.68
-166.13
15
B
LYS
4
-91.32
47.18
16
B
PHE
5
-97.30
53.55
17
B
LYS
4
-149.06
-41.85
17
B
PHE
5
-58.05
98.38
18
A
LYS
4
-99.74
-79.27
18
B
PHE
5
-104.59
50.77
18
B
THR
18
-140.36
39.11
20
B
PHE
5
-97.27
38.96
20
B
THR
18
-140.20
37.67
21
B
ASN
3
-105.69
58.97
22
A
LYS
4
-164.97
-67.66
22
B
PHE
5
-99.13
30.47
22
B
THR
18
-140.01
38.42
24
B
ASN
6
-135.39
-43.65
25
A
ASN
3
-99.17
-67.30
25
A
LYS
4
-148.00
-46.36
26
A
LYS
4
-135.36
-46.52
26
B
ASN
3
-100.35
48.48
26
B
PHE
5
-86.36
36.92
28
B
PHE
5
-100.80
53.44
29
A
PHE
5
-141.56
-41.54
29
B
THR
18
-141.04
35.36
30
B
THR
18
-145.06
37.96
31
B
ASN
3
-110.99
59.78
32
B
LYS
4
-103.32
63.89
33
A
ASP
2
-120.14
-168.73
33
A
LYS
4
-80.29
-75.24
33
B
ASN
3
-109.79
49.62
33
B
LYS
4
55.24
86.99
33
B
PHE
5
-85.85
42.52
34
A
LYS
4
-77.18
-74.19
35
A
ASN
3
-92.96
-62.81
35
A
LYS
4
-151.78
-56.65
35
B
ASN
3
57.59
89.14
37
A
ASN
23
-115.52
-165.87
38
A
LYS
4
-144.12
-61.78
38
B
THR
18
-141.93
37.55
39
B
THR
18
-140.63
37.64
IMMUNOGLOBULIN G BINDING PROTEIN A, ZSPA-1 AFFIBODY
An affibody in complex with a target protein: structure and coupled folding
1
N
N
2
N
N
A
LYS
4
A
LYS
4
HELX_P
A
HIS
18
A
HIS
18
1
1
15
A
GLU
24
A
GLU
24
HELX_P
A
ASP
36
A
ASP
36
1
2
13
A
SER
41
A
SER
41
HELX_P
A
ALA
54
A
ALA
54
1
3
14
B
ASN
6
B
ASN
6
HELX_P
B
THR
18
B
THR
18
1
4
13
B
ASP
24
B
ASP
24
HELX_P
B
ASP
36
B
ASP
36
1
5
13
B
PRO
38
B
PRO
38
HELX_P
B
GLN
40
B
GLN
40
5
6
3
B
SER
41
B
SER
41
HELX_P
B
GLN
55
B
GLN
55
1
7
15
IMMUNE SYSTEM
IMMUNE SYSTEM, PROTEIN-PROTEIN INTERACTIONS, PROTEIN ENGINEERING, MOLECULAR RECOGNITION, NMR SPECTROSCOPY, MOLTEN GLOBULE, INDUCED FIT, COUPLED PROTEIN FOLDING, AFFIBODY, IGG BINDING PROTEIN A
1H0T
PDB
1
1H0T
SPA1_STAAU
UNP
1
P02976
1H0T
PDB
2
1H0T
1
1
1H0T
1
1
1H0T
A
1
1
1
213
269
1H0T
2
58
P02976
A
2
2
58
1
58
1H0T
1
58
1H0T
B
3
1
58
1
P 1