1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Jacobsen, J.O.B. Freund, S.M.V. Bycroft, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 The Sap Domain is a DNA-Binding Domain Capable of Binding S/Mar DNA NE Trends Biochem.Sci. TBSCDB 0946 0968-0004 25 112 10.1016/S0968-0004(99)01537-6 10694879 Sap - a Putative DNA-Binding Motif Involved in Chromosomal Organization 2000 UK Embo J. EMJODG 0897 0261-4189 17 4859 10.1093/EMBOJ/17.16.4859 9707445 A Novel Yeast Gene, Tho2, is Involved in RNA Pol II Transcription and Provides New Evidence for Transcriptional Elongation-Associated Recombination. 1998 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 5582.212 THO1 PROTEIN SAP DOMAIN, RESIDUES 2-50 1 man polymer no no GSADYSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDEESKGESEVSPQ GSADYSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDEESKGESEVSPQ S polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n BAKERS YEAST sample 4932 SACCHAROMYCES CEREVISIAE 469008 ESCHERICHIA COLI BL21(DE3) C41 PGRO entity_src_gen repository Initial release Version format compliance Version format compliance Source and taxonomy 1 0 2002-08-08 1 1 2011-05-08 1 2 2011-07-13 1 3 2018-01-24 _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant PDBE Y PDBE 2002-07-16 REL GLY 1, THROMBIN CLEAVAGE SITE INSERTION SER 2, THROMBIN CLEAVAGE SITE INSERTION STRUCTURE DETERMINED USING STANDARD TRIPLE-RESONANCE AND 3D 1H,13C- NOESY/TOCSY EXPERIMENTS ON 13C, 15N-LABELED PROTEIN. LOWEST NOE ENERGIES 50 20 13C-FILTERED NOESY TOCSY 150 mM 6.8 pH 1 atm 298 K REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. RESIDUES 45-51 ARE DISORDERED WITH NO DEFINED STRUCTURE AND NOT INCLUDED IN THE COORDINATES. simulated annealing 1 1.5MM BRUNGER refinement X-PLOR 3.8 structure solution FELIX structure solution SPARKY structure solution XPLOR 3.8 500 Bruker DRX GLY 1 n 1 GLY 1 S SER 2 n 2 SER 2 S ALA 3 n 3 ALA 3 S ASP 4 n 4 ASP 4 S TYR 5 n 5 TYR 5 S SER 6 n 6 SER 6 S SER 7 n 7 SER 7 S LEU 8 n 8 LEU 8 S THR 9 n 9 THR 9 S VAL 10 n 10 VAL 10 S VAL 11 n 11 VAL 11 S GLN 12 n 12 GLN 12 S LEU 13 n 13 LEU 13 S LYS 14 n 14 LYS 14 S ASP 15 n 15 ASP 15 S LEU 16 n 16 LEU 16 S LEU 17 n 17 LEU 17 S THR 18 n 18 THR 18 S LYS 19 n 19 LYS 19 S ARG 20 n 20 ARG 20 S ASN 21 n 21 ASN 21 S LEU 22 n 22 LEU 22 S SER 23 n 23 SER 23 S VAL 24 n 24 VAL 24 S GLY 25 n 25 GLY 25 S GLY 26 n 26 GLY 26 S LEU 27 n 27 LEU 27 S LYS 28 n 28 LYS 28 S ASN 29 n 29 ASN 29 S GLU 30 n 30 GLU 30 S LEU 31 n 31 LEU 31 S VAL 32 n 32 VAL 32 S GLN 33 n 33 GLN 33 S ARG 34 n 34 ARG 34 S LEU 35 n 35 LEU 35 S ILE 36 n 36 ILE 36 S LYS 37 n 37 LYS 37 S ASP 38 n 38 ASP 38 S ASP 39 n 39 ASP 39 S GLU 40 n 40 GLU 40 S GLU 41 n 41 GLU 41 S SER 42 n 42 SER 42 S LYS 43 n 43 LYS 43 S GLY 44 n 44 GLY 44 S n 45 45 S n 46 46 S n 47 47 S n 48 48 S n 49 49 S n 50 50 S n 51 51 S author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 S GLU 45 A GLU 45 1 Y 1 S SER 46 A SER 46 1 Y 1 S GLU 47 A GLU 47 1 Y 1 S VAL 48 A VAL 48 1 Y 1 S SER 49 A SER 49 1 Y 1 S PRO 50 A PRO 50 1 Y 1 S GLN 51 A GLN 51 1 Y 2 S GLU 45 A GLU 45 1 Y 2 S SER 46 A SER 46 1 Y 2 S GLU 47 A GLU 47 1 Y 2 S VAL 48 A VAL 48 1 Y 2 S SER 49 A SER 49 1 Y 2 S PRO 50 A PRO 50 1 Y 2 S GLN 51 A GLN 51 1 Y 3 S GLU 45 A GLU 45 1 Y 3 S SER 46 A SER 46 1 Y 3 S GLU 47 A GLU 47 1 Y 3 S VAL 48 A VAL 48 1 Y 3 S SER 49 A SER 49 1 Y 3 S PRO 50 A PRO 50 1 Y 3 S GLN 51 A GLN 51 1 Y 4 S GLU 45 A GLU 45 1 Y 4 S SER 46 A SER 46 1 Y 4 S GLU 47 A GLU 47 1 Y 4 S VAL 48 A VAL 48 1 Y 4 S SER 49 A SER 49 1 Y 4 S PRO 50 A PRO 50 1 Y 4 S GLN 51 A GLN 51 1 Y 5 S GLU 45 A GLU 45 1 Y 5 S SER 46 A SER 46 1 Y 5 S GLU 47 A GLU 47 1 Y 5 S VAL 48 A VAL 48 1 Y 5 S SER 49 A SER 49 1 Y 5 S PRO 50 A PRO 50 1 Y 5 S GLN 51 A GLN 51 1 Y 6 S GLU 45 A GLU 45 1 Y 6 S SER 46 A SER 46 1 Y 6 S GLU 47 A GLU 47 1 Y 6 S VAL 48 A VAL 48 1 Y 6 S SER 49 A SER 49 1 Y 6 S PRO 50 A PRO 50 1 Y 6 S GLN 51 A GLN 51 1 Y 7 S GLU 45 A GLU 45 1 Y 7 S SER 46 A SER 46 1 Y 7 S GLU 47 A GLU 47 1 Y 7 S VAL 48 A VAL 48 1 Y 7 S SER 49 A SER 49 1 Y 7 S PRO 50 A PRO 50 1 Y 7 S GLN 51 A GLN 51 1 Y 8 S GLU 45 A GLU 45 1 Y 8 S SER 46 A SER 46 1 Y 8 S GLU 47 A GLU 47 1 Y 8 S VAL 48 A VAL 48 1 Y 8 S SER 49 A SER 49 1 Y 8 S PRO 50 A PRO 50 1 Y 8 S GLN 51 A GLN 51 1 Y 9 S GLU 45 A GLU 45 1 Y 9 S SER 46 A SER 46 1 Y 9 S GLU 47 A GLU 47 1 Y 9 S VAL 48 A VAL 48 1 Y 9 S SER 49 A SER 49 1 Y 9 S PRO 50 A PRO 50 1 Y 9 S GLN 51 A GLN 51 1 Y 10 S GLU 45 A GLU 45 1 Y 10 S SER 46 A SER 46 1 Y 10 S GLU 47 A GLU 47 1 Y 10 S VAL 48 A VAL 48 1 Y 10 S SER 49 A SER 49 1 Y 10 S PRO 50 A PRO 50 1 Y 10 S GLN 51 A GLN 51 1 Y 11 S GLU 45 A GLU 45 1 Y 11 S SER 46 A SER 46 1 Y 11 S GLU 47 A GLU 47 1 Y 11 S VAL 48 A VAL 48 1 Y 11 S SER 49 A SER 49 1 Y 11 S PRO 50 A PRO 50 1 Y 11 S GLN 51 A GLN 51 1 Y 12 S GLU 45 A GLU 45 1 Y 12 S SER 46 A SER 46 1 Y 12 S GLU 47 A GLU 47 1 Y 12 S VAL 48 A VAL 48 1 Y 12 S SER 49 A SER 49 1 Y 12 S PRO 50 A PRO 50 1 Y 12 S GLN 51 A GLN 51 1 Y 13 S GLU 45 A GLU 45 1 Y 13 S SER 46 A SER 46 1 Y 13 S GLU 47 A GLU 47 1 Y 13 S VAL 48 A VAL 48 1 Y 13 S SER 49 A SER 49 1 Y 13 S PRO 50 A PRO 50 1 Y 13 S GLN 51 A GLN 51 1 Y 14 S GLU 45 A GLU 45 1 Y 14 S SER 46 A SER 46 1 Y 14 S GLU 47 A GLU 47 1 Y 14 S VAL 48 A VAL 48 1 Y 14 S SER 49 A SER 49 1 Y 14 S PRO 50 A PRO 50 1 Y 14 S GLN 51 A GLN 51 1 Y 15 S GLU 45 A GLU 45 1 Y 15 S SER 46 A SER 46 1 Y 15 S GLU 47 A GLU 47 1 Y 15 S VAL 48 A VAL 48 1 Y 15 S SER 49 A SER 49 1 Y 15 S PRO 50 A PRO 50 1 Y 15 S GLN 51 A GLN 51 1 Y 16 S GLU 45 A GLU 45 1 Y 16 S SER 46 A SER 46 1 Y 16 S GLU 47 A GLU 47 1 Y 16 S VAL 48 A VAL 48 1 Y 16 S SER 49 A SER 49 1 Y 16 S PRO 50 A PRO 50 1 Y 16 S GLN 51 A GLN 51 1 Y 17 S GLU 45 A GLU 45 1 Y 17 S SER 46 A SER 46 1 Y 17 S GLU 47 A GLU 47 1 Y 17 S VAL 48 A VAL 48 1 Y 17 S SER 49 A SER 49 1 Y 17 S PRO 50 A PRO 50 1 Y 17 S GLN 51 A GLN 51 1 Y 18 S GLU 45 A GLU 45 1 Y 18 S SER 46 A SER 46 1 Y 18 S GLU 47 A GLU 47 1 Y 18 S VAL 48 A VAL 48 1 Y 18 S SER 49 A SER 49 1 Y 18 S PRO 50 A PRO 50 1 Y 18 S GLN 51 A GLN 51 1 Y 19 S GLU 45 A GLU 45 1 Y 19 S SER 46 A SER 46 1 Y 19 S GLU 47 A GLU 47 1 Y 19 S VAL 48 A VAL 48 1 Y 19 S SER 49 A SER 49 1 Y 19 S PRO 50 A PRO 50 1 Y 19 S GLN 51 A GLN 51 1 Y 20 S GLU 45 A GLU 45 1 Y 20 S SER 46 A SER 46 1 Y 20 S GLU 47 A GLU 47 1 Y 20 S VAL 48 A VAL 48 1 Y 20 S SER 49 A SER 49 1 Y 20 S PRO 50 A PRO 50 1 Y 20 S GLN 51 A GLN 51 1 Y 4 S S O HZ1 LEU LYS 8 28 1.54 5 S S O HZ3 LEU LYS 8 28 1.53 9 S S OD1 HZ2 ASP LYS 15 19 1.60 10 S S OG1 HE21 THR GLN 9 12 1.50 14 S S O HZ3 LEU LYS 8 28 1.57 15 S S O HG1 LYS THR 14 18 1.41 1 S ARG 20 0.190 SIDE CHAIN 1 S ARG 34 0.265 SIDE CHAIN 2 S ARG 20 0.317 SIDE CHAIN 2 S ARG 34 0.229 SIDE CHAIN 3 S ARG 20 0.265 SIDE CHAIN 3 S ARG 34 0.219 SIDE CHAIN 4 S ARG 20 0.220 SIDE CHAIN 4 S ARG 34 0.301 SIDE CHAIN 5 S ARG 20 0.283 SIDE CHAIN 5 S ARG 34 0.214 SIDE CHAIN 6 S ARG 20 0.292 SIDE CHAIN 6 S ARG 34 0.196 SIDE CHAIN 7 S ARG 20 0.278 SIDE CHAIN 7 S ARG 34 0.155 SIDE CHAIN 8 S ARG 20 0.291 SIDE CHAIN 8 S ARG 34 0.294 SIDE CHAIN 9 S ARG 20 0.274 SIDE CHAIN 10 S ARG 20 0.314 SIDE CHAIN 10 S ARG 34 0.208 SIDE CHAIN 11 S ARG 20 0.312 SIDE CHAIN 11 S ARG 34 0.230 SIDE CHAIN 12 S ARG 20 0.195 SIDE CHAIN 12 S ARG 34 0.240 SIDE CHAIN 13 S ARG 20 0.262 SIDE CHAIN 13 S ARG 34 0.317 SIDE CHAIN 14 S ARG 20 0.312 SIDE CHAIN 14 S ARG 34 0.317 SIDE CHAIN 15 S ARG 20 0.184 SIDE CHAIN 15 S ARG 34 0.317 SIDE CHAIN 16 S ARG 20 0.227 SIDE CHAIN 16 S ARG 34 0.291 SIDE CHAIN 17 S ARG 20 0.301 SIDE CHAIN 17 S ARG 34 0.302 SIDE CHAIN 18 S ARG 20 0.317 SIDE CHAIN 18 S ARG 34 0.316 SIDE CHAIN 19 S ARG 20 0.314 SIDE CHAIN 19 S ARG 34 0.316 SIDE CHAIN 20 S ARG 20 0.306 SIDE CHAIN 20 S ARG 34 0.236 SIDE CHAIN 1 S SER 2 -151.48 -52.25 1 S ALA 3 49.26 -178.19 1 S ASP 4 -121.11 -95.69 1 S SER 6 -3.11 -64.38 1 S SER 7 -153.19 48.15 1 S LYS 43 -178.74 105.45 2 S ASP 4 -128.84 -95.46 2 S SER 6 1.99 -70.08 2 S SER 7 -151.92 56.84 2 S GLU 41 42.69 73.97 3 S SER 2 64.95 179.71 3 S ASP 4 -128.35 -95.38 3 S SER 6 -6.55 -60.58 3 S SER 7 -152.96 49.67 3 S GLU 41 65.31 96.68 4 S ALA 3 57.39 95.17 4 S ASP 4 -124.60 -94.87 4 S SER 6 4.12 -70.92 4 S SER 7 -151.90 55.90 4 S SER 23 -53.00 -170.99 4 S LYS 43 -153.37 -69.99 5 S SER 2 52.76 -88.29 5 S ALA 3 59.74 13.23 5 S ASP 4 -124.28 -95.77 5 S SER 6 8.07 -74.97 5 S SER 7 -152.32 55.49 5 S SER 23 -39.20 151.67 6 S SER 2 -167.96 -58.46 6 S ALA 3 172.46 159.82 6 S ASP 4 -118.02 -94.97 6 S SER 6 -5.17 -62.23 6 S SER 7 -152.64 50.72 6 S SER 23 -50.07 -172.43 6 S SER 42 55.91 -177.27 6 S LYS 43 61.44 164.00 7 S ASP 4 -117.69 -95.48 7 S SER 6 1.28 -69.10 7 S SER 7 -151.36 53.91 7 S LYS 43 61.33 137.01 8 S ALA 3 -162.60 91.18 8 S ASP 4 -123.69 -95.13 8 S SER 6 -11.22 -55.27 8 S SER 7 -154.43 48.80 8 S SER 23 -72.12 -167.66 8 S SER 42 -176.75 77.67 9 S ASP 4 -120.79 -95.12 9 S SER 6 -3.81 -64.18 9 S SER 7 -153.17 56.17 9 S SER 23 -52.53 -170.77 9 S GLU 41 42.11 -152.38 9 S SER 42 -73.62 -158.02 10 S ASP 4 -125.65 -95.57 10 S SER 6 3.01 -68.79 10 S SER 7 -154.47 49.16 10 S SER 42 -85.74 -74.44 10 S LYS 43 178.05 54.91 11 S SER 2 46.07 76.29 11 S ASP 4 -128.71 -95.67 11 S SER 6 -10.75 -55.10 11 S SER 7 -153.91 44.29 11 S SER 23 -47.60 -176.85 11 S VAL 24 -119.35 71.81 11 S GLU 41 45.01 -93.07 12 S SER 2 -169.64 48.18 12 S ALA 3 174.62 163.61 12 S ASP 4 -118.54 -95.57 12 S SER 6 -5.12 -61.40 12 S SER 7 -153.77 47.51 12 S SER 23 -49.10 -173.84 13 S SER 2 -100.84 53.55 13 S ALA 3 42.72 71.98 13 S ASP 4 -128.44 -95.09 13 S SER 6 4.95 -72.09 13 S SER 7 -150.84 57.75 13 S SER 23 -45.61 177.00 14 S SER 2 -175.84 -159.08 14 S ALA 3 63.33 133.32 14 S ASP 4 -128.16 -95.10 14 S SER 6 -5.86 -62.14 14 S SER 7 -153.95 52.46 14 S SER 42 68.42 -63.75 15 S SER 2 -55.62 -176.83 15 S ASP 4 -128.78 -95.82 15 S SER 6 -14.41 -50.76 15 S SER 7 -151.17 43.56 15 S SER 23 -45.08 176.48 15 S GLU 41 65.39 -69.27 15 S SER 42 -58.86 -179.45 15 S LYS 43 51.48 -172.58 16 S ALA 3 -106.32 57.08 16 S ASP 4 -129.03 -95.74 16 S SER 6 0.07 -67.15 16 S SER 7 -153.66 54.81 17 S ALA 3 -159.09 -135.57 17 S ASP 4 -114.69 -94.63 17 S SER 6 -5.20 -62.83 17 S SER 7 -153.31 54.50 17 S SER 23 -79.92 -167.49 17 S GLU 41 64.54 102.01 18 S ALA 3 -172.53 64.74 18 S ASP 4 -120.33 -95.95 18 S SER 6 -18.23 -46.15 18 S SER 7 -151.55 40.58 18 S SER 23 -54.37 -168.07 18 S GLU 41 52.66 170.95 18 S SER 42 53.35 -166.89 19 S ASP 4 -118.45 -95.19 19 S SER 6 -0.83 -66.89 19 S SER 7 -152.47 54.78 19 S LYS 43 52.94 -88.64 20 S ASP 4 -128.90 -95.12 20 S SER 6 -5.83 -61.49 20 S SER 7 -153.51 55.73 20 S SER 23 -77.78 -166.98 THO1 PROTEIN The SAP domain is a DNA-Binding Domain Capable of Binding S/MAR DNA 1 N N S ASP 4 A ASP 4 HELX_P S LEU 8 A LEU 8 5 1 5 S VAL 10 A VAL 10 HELX_P S ARG 20 A ARG 20 1 2 11 S LEU 27 A LEU 27 HELX_P S GLU 40 A GLU 40 1 3 14 DNA BINDING SAP DOMAIN, DNA BINDING 1H1J PDB 1 1H1J THO1_YEAST UNP 1 P40040 1 2 1H1J 1 2 1H1J S 1 1 2 2 50 1H1J 3 51 P40040 S 2 3 51 1 P 1