0.012561
0.007252
0.000000
0.000000
0.014504
0.000000
0.000000
0.000000
0.004181
0.00000
0.00000
0.00000
Gomis-Ruth, F.X.
Dessen, A.
Bracher, A.
Klenk, H.D.
Weissenhorn, W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.00
90.00
120.00
79.610
79.610
239.180
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
N
N
39
S
C
N
40
N
C
N
41
N
O
N
42
N
C
N
43
N
O
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
N
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
CL
N
112
N
O
N
113
N
P
N
114
N
O
N
115
N
O
N
116
N
O
N
117
N
C
N
118
R
C
N
119
N
O
N
120
S
C
N
121
N
O
N
122
R
C
N
123
N
O
N
124
R
C
Y
125
N
N
Y
126
N
C
Y
127
N
N
Y
128
N
C
N
129
N
C
N
130
N
O
N
131
N
N
N
132
N
C
N
133
N
N
N
134
N
N
Y
135
N
C
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
N
N
151
S
C
N
152
N
C
N
153
N
O
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
O
N
158
N
N
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
N
N
171
S
C
N
172
N
C
N
173
N
O
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
O
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
N
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
N
N
200
S
C
N
201
N
C
N
202
N
O
N
203
N
C
Y
204
N
C
Y
205
N
N
Y
206
N
C
Y
207
N
C
Y
208
N
N
N
209
N
O
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
O
N
221
N
H
N
222
N
H
N
223
N
N
N
224
S
C
N
225
N
C
N
226
N
O
N
227
S
C
N
228
N
C
N
229
N
C
N
230
N
C
N
231
N
O
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
N
N
246
S
C
N
247
N
C
N
248
N
O
N
249
N
C
N
250
N
C
N
251
N
C
N
252
N
C
N
253
N
O
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
N
N
268
S
C
N
269
N
C
N
270
N
O
N
271
N
C
N
272
N
C
N
273
N
C
N
274
N
C
N
275
N
N
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
N
N
293
S
C
N
294
N
C
N
295
N
O
N
296
N
C
N
297
N
C
N
298
N
S
N
299
N
C
N
300
N
O
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
Y
322
N
C
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
N
C
N
340
N
C
N
341
N
C
N
342
N
O
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
N
357
N
O
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
N
N
367
S
C
N
368
N
C
N
369
N
O
N
370
R
C
N
371
N
O
N
372
N
C
N
373
N
O
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
N
Y
392
N
C
Y
393
N
C
Y
394
N
C
Y
395
N
C
Y
396
N
C
N
397
N
O
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
N
N
411
S
C
N
412
N
C
N
413
N
O
N
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
C
Y
420
N
C
N
421
N
O
N
422
N
O
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
O
N
435
N
P
N
436
N
O
N
437
N
O
N
438
N
O
N
439
N
C
N
440
R
C
N
441
N
O
N
442
S
C
N
443
N
O
N
444
R
C
N
445
N
O
N
446
R
C
N
447
N
N
N
448
N
C
N
449
N
O
N
450
N
N
N
451
N
C
N
452
N
O
N
453
N
C
N
454
N
C
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
N
N
469
S
C
N
470
N
C
N
471
N
O
N
472
N
C
N
473
N
C
N
474
N
C
N
475
N
O
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
doub
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
Y
133
N
sing
Y
134
N
sing
Y
135
N
doub
N
136
N
sing
Y
137
N
sing
N
138
N
sing
Y
139
N
doub
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
doub
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
Y
206
N
sing
Y
207
N
doub
Y
208
N
doub
N
209
N
sing
Y
210
N
sing
N
211
N
sing
Y
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
doub
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
Y
314
N
doub
Y
315
N
sing
Y
316
N
sing
N
317
N
sing
Y
318
N
doub
N
319
N
sing
Y
320
N
doub
N
321
N
sing
Y
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
doub
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
doub
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
Y
383
N
doub
Y
384
N
sing
Y
385
N
sing
N
386
N
sing
Y
387
N
doub
Y
388
N
sing
Y
389
N
sing
N
390
N
sing
Y
391
N
sing
Y
392
N
doub
N
393
N
sing
Y
394
N
doub
N
395
N
sing
Y
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
doub
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
Y
411
N
doub
Y
412
N
sing
Y
413
N
sing
N
414
N
sing
Y
415
N
doub
N
416
N
sing
Y
417
N
doub
N
418
N
sing
Y
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
doub
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
doub
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
doub
N
455
N
sing
N
456
N
doub
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
doub
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
UK
Structure
STRUE6
2005
0969-2126
11
423
10.1016/S0969-2126(03)00050-9
12679020
The Matrix Protein Vp40 from Ebola Virus Octamerizes Into Pore-Like Structures with Specific RNA Binding Properties
2003
UK
Embo J.
EMJODG
0897
0261-4189
19
4228
10.1093/EMBOJ/19.16.4228
10944105
Crystal Structure of the Matrix Protein Vp40 from Ebola Virus
2000
10.2210/pdb1h2d/pdb
pdb_00001h2d
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
SINGLE WAVELENGTH
M
x-ray
1
0.979
1.0
ID14-4
ESRF
0.979
SYNCHROTRON
ESRF BEAMLINE ID14-4
VP40[31-212] VARIANT
19655.395
MATRIX PROTEIN VP40
N-TERMINAL DOMAIN, RESIDUES 31-212
2
man
polymer
RIBONUCLEOTIDE
935.620
5'-R(*UP*GP*AP)-3'
2
nat
polymer
35.453
CHLORIDE ION
2
syn
non-polymer
18.015
water
109
nat
water
no
no
NSNTGFLTPESVNGDTPSNPLRPIADDTIDHASHTPGSVSSAFILEAMVNVISGPKVLMKQIPIWLPLGVADQKTYSFDS
TTAAIMLASYTITHFGKATNPLVRVNRLGPGIPDHPLRLLRIGNQAFLQEFVLPPVQLPQYFTFDLTALKLITQPLPAAT
WTDDTPTGSNGALRPGISFHPK
NSNTGFLTPESVNGDTPSNPLRPIADDTIDHASHTPGSVSSAFILEAMVNVISGPKVLMKQIPIWLPLGVADQKTYSFDS
TTAAIMLASYTITHFGKATNPLVRVNRLGPGIPDHPLRLLRIGNQAFLQEFVLPPVQLPQYFTFDLTALKLITQPLPAAT
WTDDTPTGSNGALRPGISFHPK
A,B
polypeptide(L)
no
no
UGA
UGA
R,S
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ZAIRE MAYINGA
sample
205488
EBOLA VIRUS
562
ESCHERICHIA COLI
MRNA STOP-CODON SEQUENCE, BIOCHEMICAL SYNTHESIS BY THE EXPRESSION HOST AND UPTAKE BY THE PROTEIN DURING OVEREXPRESSION
sample
562
ESCHERICHIA COLI
2.7
55
PROTEIN DIMER USED AS SEARCH MODEL.
VAPOR DIFFUSION, HANGING DROP
4.60
1 UL OF PROTEIN (13 MG/ML) AND 1 UL OF WELL SOLUTION (100 MM NA-ACETATE PH4.6, 35 % MPD, 4 % GLYCEROL).HANGING DROP., pH 4.60
database_PDB_rev
database_PDB_rev_record
exptl_crystal_grow
pdbx_database_proc
pdbx_database_status
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Data collection
Experimental preparation
Other
Data collection
Database references
Other
Refinement description
1
0
2003-04-10
1
1
2011-05-08
1
2
2011-07-13
1
3
2019-05-08
1
4
2023-12-13
_exptl_crystal_grow.method
_pdbx_database_status.recvd_author_approval
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
EBOLA VIRUS MATRIX PROTEIN VP40 N-TERMINAL DOMAIN IN COMPLEX WITH RNA (HIGH-RESOLUTION VP40[55-194] VARIANT).
SHEET
THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN
ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW,
TWO SHEETS ARE DEFINED.
PDBE
Y
PDBE
2002-08-06
REL
REL
1
A
O
HOH
2001
6.87
1
A
O
HOH
2002
10.53
1
A
O
HOH
2003
5.83
1
A
O
HOH
2005
6.90
1
A
O
HOH
2018
6.60
1
B
O
HOH
2005
6.22
1
B
O
HOH
2008
7.77
1
B
O
HOH
2009
7.82
1
B
O
HOH
2010
6.33
1
B
O
HOH
2012
5.89
1
B
O
HOH
2015
6.62
1
B
O
HOH
2018
6.31
1
B
O
HOH
2022
7.12
1
B
O
HOH
2037
6.58
CL
CHLORIDE ION
HOH
water
THE BIOLOGICALLY RELEVANT OLIGOMER IS A HOMOOCTAMER AS
CREATED BY THE CRYSTALLOGRAPHIC 222 SYMMETRY INCLUDED IN
THE OVERALL P6(2)22 CRYSTAL SYMMETRY. THE PRESENTLY
DEPOSITED ASYMMETRIC UNIT CONTAINS TWO CHEMICALLY IDENTICAL
PROTEIN CHAINS (A AND B), EACH OF THEM WITH AN ASSOCIATED
RNA TRINUCLEOTIDE (CHAINS R AND S). WITH CRYSTALLOGRAPHIC
222 SYMMETRY, THE BIOLOGICALLY RELEVANT OCTAMER IS MADE.
THE STRUCTURE IS EQUIVALENT (THOUGH TO LOWER RESOLUTION AND
LESS WELL REFINED) TO ENTRY 1H2C.
1H2C
PDB ENTRY 1H2C
PDB
experimental model
CL
1201
3
CL
CL
1201
A
CL
1202
3
CL
CL
1202
B
HOH
2001
4
HOH
HOH
2001
A
HOH
2002
4
HOH
HOH
2002
A
HOH
2003
4
HOH
HOH
2003
A
HOH
2004
4
HOH
HOH
2004
A
HOH
2005
4
HOH
HOH
2005
A
HOH
2006
4
HOH
HOH
2006
A
HOH
2007
4
HOH
HOH
2007
A
HOH
2008
4
HOH
HOH
2008
A
HOH
2009
4
HOH
HOH
2009
A
HOH
2010
4
HOH
HOH
2010
A
HOH
2011
4
HOH
HOH
2011
A
HOH
2012
4
HOH
HOH
2012
A
HOH
2013
4
HOH
HOH
2013
A
HOH
2014
4
HOH
HOH
2014
A
HOH
2015
4
HOH
HOH
2015
A
HOH
2016
4
HOH
HOH
2016
A
HOH
2017
4
HOH
HOH
2017
A
HOH
2018
4
HOH
HOH
2018
A
HOH
2019
4
HOH
HOH
2019
A
HOH
2020
4
HOH
HOH
2020
A
HOH
2021
4
HOH
HOH
2021
A
HOH
2022
4
HOH
HOH
2022
A
HOH
2023
4
HOH
HOH
2023
A
HOH
2024
4
HOH
HOH
2024
A
HOH
2025
4
HOH
HOH
2025
A
HOH
2026
4
HOH
HOH
2026
A
HOH
2027
4
HOH
HOH
2027
A
HOH
2028
4
HOH
HOH
2028
A
HOH
2029
4
HOH
HOH
2029
A
HOH
2030
4
HOH
HOH
2030
A
HOH
2031
4
HOH
HOH
2031
A
HOH
2032
4
HOH
HOH
2032
A
HOH
2033
4
HOH
HOH
2033
A
HOH
2034
4
HOH
HOH
2034
A
HOH
2035
4
HOH
HOH
2035
A
HOH
2036
4
HOH
HOH
2036
A
HOH
2001
4
HOH
HOH
2001
B
HOH
2002
4
HOH
HOH
2002
B
HOH
2003
4
HOH
HOH
2003
B
HOH
2004
4
HOH
HOH
2004
B
HOH
2005
4
HOH
HOH
2005
B
HOH
2006
4
HOH
HOH
2006
B
HOH
2007
4
HOH
HOH
2007
B
HOH
2008
4
HOH
HOH
2008
B
HOH
2009
4
HOH
HOH
2009
B
HOH
2010
4
HOH
HOH
2010
B
HOH
2011
4
HOH
HOH
2011
B
HOH
2012
4
HOH
HOH
2012
B
HOH
2013
4
HOH
HOH
2013
B
HOH
2014
4
HOH
HOH
2014
B
HOH
2015
4
HOH
HOH
2015
B
HOH
2016
4
HOH
HOH
2016
B
HOH
2017
4
HOH
HOH
2017
B
HOH
2018
4
HOH
HOH
2018
B
HOH
2019
4
HOH
HOH
2019
B
HOH
2020
4
HOH
HOH
2020
B
HOH
2021
4
HOH
HOH
2021
B
HOH
2022
4
HOH
HOH
2022
B
HOH
2023
4
HOH
HOH
2023
B
HOH
2024
4
HOH
HOH
2024
B
HOH
2025
4
HOH
HOH
2025
B
HOH
2026
4
HOH
HOH
2026
B
HOH
2027
4
HOH
HOH
2027
B
HOH
2028
4
HOH
HOH
2028
B
HOH
2029
4
HOH
HOH
2029
B
HOH
2030
4
HOH
HOH
2030
B
HOH
2031
4
HOH
HOH
2031
B
HOH
2032
4
HOH
HOH
2032
B
HOH
2033
4
HOH
HOH
2033
B
HOH
2034
4
HOH
HOH
2034
B
HOH
2035
4
HOH
HOH
2035
B
HOH
2036
4
HOH
HOH
2036
B
HOH
2037
4
HOH
HOH
2037
B
HOH
2038
4
HOH
HOH
2038
B
HOH
2039
4
HOH
HOH
2039
B
HOH
2040
4
HOH
HOH
2040
B
HOH
2041
4
HOH
HOH
2041
B
HOH
2042
4
HOH
HOH
2042
B
HOH
2043
4
HOH
HOH
2043
B
HOH
2044
4
HOH
HOH
2044
B
HOH
2045
4
HOH
HOH
2045
B
HOH
2046
4
HOH
HOH
2046
B
HOH
2047
4
HOH
HOH
2047
B
HOH
2048
4
HOH
HOH
2048
B
HOH
2049
4
HOH
HOH
2049
B
HOH
2050
4
HOH
HOH
2050
B
HOH
2051
4
HOH
HOH
2051
B
HOH
2052
4
HOH
HOH
2052
B
HOH
2053
4
HOH
HOH
2053
B
HOH
2054
4
HOH
HOH
2054
B
HOH
2055
4
HOH
HOH
2055
B
HOH
2056
4
HOH
HOH
2056
B
HOH
2057
4
HOH
HOH
2057
B
HOH
2058
4
HOH
HOH
2058
B
HOH
2059
4
HOH
HOH
2059
B
HOH
2060
4
HOH
HOH
2060
B
HOH
2061
4
HOH
HOH
2061
B
HOH
2001
4
HOH
HOH
2001
R
HOH
2002
4
HOH
HOH
2002
R
HOH
2003
4
HOH
HOH
2003
R
HOH
2004
4
HOH
HOH
2004
R
HOH
2005
4
HOH
HOH
2005
R
HOH
2006
4
HOH
HOH
2006
R
HOH
2007
4
HOH
HOH
2007
R
HOH
2008
4
HOH
HOH
2008
R
HOH
2001
4
HOH
HOH
2001
S
HOH
2002
4
HOH
HOH
2002
S
HOH
2003
4
HOH
HOH
2003
S
HOH
2004
4
HOH
HOH
2004
S
n
1
31
A
n
2
32
A
n
3
33
A
n
4
34
A
n
5
35
A
n
6
36
A
n
7
37
A
n
8
38
A
n
9
39
A
n
10
40
A
n
11
41
A
n
12
42
A
n
13
43
A
n
14
44
A
n
15
45
A
n
16
46
A
n
17
47
A
n
18
48
A
n
19
49
A
n
20
50
A
n
21
51
A
n
22
52
A
n
23
53
A
n
24
54
A
n
25
55
A
n
26
56
A
n
27
57
A
n
28
58
A
n
29
59
A
n
30
60
A
n
31
61
A
n
32
62
A
n
33
63
A
n
34
64
A
n
35
65
A
n
36
66
A
n
37
67
A
n
38
68
A
VAL
69
n
39
VAL
69
A
SER
70
n
40
SER
70
A
SER
71
n
41
SER
71
A
ALA
72
n
42
ALA
72
A
PHE
73
n
43
PHE
73
A
ILE
74
n
44
ILE
74
A
LEU
75
n
45
LEU
75
A
GLU
76
n
46
GLU
76
A
ALA
77
n
47
ALA
77
A
MET
78
n
48
MET
78
A
VAL
79
n
49
VAL
79
A
ASN
80
n
50
ASN
80
A
VAL
81
n
51
VAL
81
A
ILE
82
n
52
ILE
82
A
SER
83
n
53
SER
83
A
GLY
84
n
54
GLY
84
A
PRO
85
n
55
PRO
85
A
LYS
86
n
56
LYS
86
A
VAL
87
n
57
VAL
87
A
LEU
88
n
58
LEU
88
A
MET
89
n
59
MET
89
A
LYS
90
n
60
LYS
90
A
GLN
91
n
61
GLN
91
A
ILE
92
n
62
ILE
92
A
PRO
93
n
63
PRO
93
A
ILE
94
n
64
ILE
94
A
TRP
95
n
65
TRP
95
A
LEU
96
n
66
LEU
96
A
PRO
97
n
67
PRO
97
A
LEU
98
n
68
LEU
98
A
GLY
99
n
69
GLY
99
A
VAL
100
n
70
VAL
100
A
ALA
101
n
71
ALA
101
A
ASP
102
n
72
ASP
102
A
GLN
103
n
73
GLN
103
A
LYS
104
n
74
LYS
104
A
THR
105
n
75
THR
105
A
TYR
106
n
76
TYR
106
A
SER
107
n
77
SER
107
A
PHE
108
n
78
PHE
108
A
ASP
109
n
79
ASP
109
A
SER
110
n
80
SER
110
A
THR
111
n
81
THR
111
A
THR
112
n
82
THR
112
A
ALA
113
n
83
ALA
113
A
ALA
114
n
84
ALA
114
A
ILE
115
n
85
ILE
115
A
MET
116
n
86
MET
116
A
LEU
117
n
87
LEU
117
A
ALA
118
n
88
ALA
118
A
SER
119
n
89
SER
119
A
TYR
120
n
90
TYR
120
A
THR
121
n
91
THR
121
A
ILE
122
n
92
ILE
122
A
THR
123
n
93
THR
123
A
HIS
124
n
94
HIS
124
A
PHE
125
n
95
PHE
125
A
GLY
126
n
96
GLY
126
A
LYS
127
n
97
LYS
127
A
ALA
128
n
98
ALA
128
A
THR
129
n
99
THR
129
A
ASN
130
n
100
ASN
130
A
PRO
131
n
101
PRO
131
A
LEU
132
n
102
LEU
132
A
VAL
133
n
103
VAL
133
A
ARG
134
n
104
ARG
134
A
VAL
135
n
105
VAL
135
A
ASN
136
n
106
ASN
136
A
ARG
137
n
107
ARG
137
A
LEU
138
n
108
LEU
138
A
GLY
139
n
109
GLY
139
A
PRO
140
n
110
PRO
140
A
GLY
141
n
111
GLY
141
A
ILE
142
n
112
ILE
142
A
PRO
143
n
113
PRO
143
A
ASP
144
n
114
ASP
144
A
HIS
145
n
115
HIS
145
A
PRO
146
n
116
PRO
146
A
LEU
147
n
117
LEU
147
A
ARG
148
n
118
ARG
148
A
LEU
149
n
119
LEU
149
A
LEU
150
n
120
LEU
150
A
ARG
151
n
121
ARG
151
A
ILE
152
n
122
ILE
152
A
GLY
153
n
123
GLY
153
A
ASN
154
n
124
ASN
154
A
GLN
155
n
125
GLN
155
A
ALA
156
n
126
ALA
156
A
PHE
157
n
127
PHE
157
A
LEU
158
n
128
LEU
158
A
GLN
159
n
129
GLN
159
A
GLU
160
n
130
GLU
160
A
PHE
161
n
131
PHE
161
A
VAL
162
n
132
VAL
162
A
LEU
163
n
133
LEU
163
A
PRO
164
n
134
PRO
164
A
PRO
165
n
135
PRO
165
A
VAL
166
n
136
VAL
166
A
GLN
167
n
137
GLN
167
A
LEU
168
n
138
LEU
168
A
PRO
169
n
139
PRO
169
A
GLN
170
n
140
GLN
170
A
TYR
171
n
141
TYR
171
A
PHE
172
n
142
PHE
172
A
THR
173
n
143
THR
173
A
PHE
174
n
144
PHE
174
A
ASP
175
n
145
ASP
175
A
LEU
176
n
146
LEU
176
A
THR
177
n
147
THR
177
A
ALA
178
n
148
ALA
178
A
LEU
179
n
149
LEU
179
A
LYS
180
n
150
LYS
180
A
LEU
181
n
151
LEU
181
A
ILE
182
n
152
ILE
182
A
THR
183
n
153
THR
183
A
GLN
184
n
154
GLN
184
A
PRO
185
n
155
PRO
185
A
LEU
186
n
156
LEU
186
A
PRO
187
n
157
PRO
187
A
ALA
188
n
158
ALA
188
A
ALA
189
n
159
ALA
189
A
THR
190
n
160
THR
190
A
TRP
191
n
161
TRP
191
A
n
162
192
A
n
163
193
A
n
164
194
A
n
165
195
A
n
166
196
A
n
167
197
A
n
168
198
A
n
169
199
A
n
170
200
A
n
171
201
A
n
172
202
A
n
173
203
A
n
174
204
A
n
175
205
A
n
176
206
A
n
177
207
A
n
178
208
A
n
179
209
A
n
180
210
A
n
181
211
A
n
182
212
A
n
1
31
B
n
2
32
B
n
3
33
B
n
4
34
B
n
5
35
B
n
6
36
B
n
7
37
B
n
8
38
B
n
9
39
B
n
10
40
B
n
11
41
B
n
12
42
B
n
13
43
B
n
14
44
B
n
15
45
B
n
16
46
B
n
17
47
B
n
18
48
B
n
19
49
B
n
20
50
B
n
21
51
B
n
22
52
B
n
23
53
B
n
24
54
B
n
25
55
B
n
26
56
B
n
27
57
B
n
28
58
B
n
29
59
B
n
30
60
B
n
31
61
B
n
32
62
B
n
33
63
B
n
34
64
B
n
35
65
B
n
36
66
B
n
37
67
B
n
38
68
B
VAL
69
n
39
VAL
69
B
SER
70
n
40
SER
70
B
SER
71
n
41
SER
71
B
ALA
72
n
42
ALA
72
B
PHE
73
n
43
PHE
73
B
ILE
74
n
44
ILE
74
B
LEU
75
n
45
LEU
75
B
GLU
76
n
46
GLU
76
B
ALA
77
n
47
ALA
77
B
MET
78
n
48
MET
78
B
VAL
79
n
49
VAL
79
B
ASN
80
n
50
ASN
80
B
VAL
81
n
51
VAL
81
B
ILE
82
n
52
ILE
82
B
SER
83
n
53
SER
83
B
GLY
84
n
54
GLY
84
B
PRO
85
n
55
PRO
85
B
LYS
86
n
56
LYS
86
B
VAL
87
n
57
VAL
87
B
LEU
88
n
58
LEU
88
B
MET
89
n
59
MET
89
B
LYS
90
n
60
LYS
90
B
GLN
91
n
61
GLN
91
B
ILE
92
n
62
ILE
92
B
PRO
93
n
63
PRO
93
B
ILE
94
n
64
ILE
94
B
TRP
95
n
65
TRP
95
B
LEU
96
n
66
LEU
96
B
PRO
97
n
67
PRO
97
B
LEU
98
n
68
LEU
98
B
GLY
99
n
69
GLY
99
B
VAL
100
n
70
VAL
100
B
ALA
101
n
71
ALA
101
B
ASP
102
n
72
ASP
102
B
GLN
103
n
73
GLN
103
B
LYS
104
n
74
LYS
104
B
THR
105
n
75
THR
105
B
TYR
106
n
76
TYR
106
B
SER
107
n
77
SER
107
B
PHE
108
n
78
PHE
108
B
ASP
109
n
79
ASP
109
B
SER
110
n
80
SER
110
B
THR
111
n
81
THR
111
B
THR
112
n
82
THR
112
B
ALA
113
n
83
ALA
113
B
ALA
114
n
84
ALA
114
B
ILE
115
n
85
ILE
115
B
MET
116
n
86
MET
116
B
LEU
117
n
87
LEU
117
B
ALA
118
n
88
ALA
118
B
SER
119
n
89
SER
119
B
TYR
120
n
90
TYR
120
B
THR
121
n
91
THR
121
B
ILE
122
n
92
ILE
122
B
THR
123
n
93
THR
123
B
HIS
124
n
94
HIS
124
B
PHE
125
n
95
PHE
125
B
GLY
126
n
96
GLY
126
B
LYS
127
n
97
LYS
127
B
ALA
128
n
98
ALA
128
B
THR
129
n
99
THR
129
B
ASN
130
n
100
ASN
130
B
PRO
131
n
101
PRO
131
B
LEU
132
n
102
LEU
132
B
VAL
133
n
103
VAL
133
B
ARG
134
n
104
ARG
134
B
VAL
135
n
105
VAL
135
B
ASN
136
n
106
ASN
136
B
ARG
137
n
107
ARG
137
B
LEU
138
n
108
LEU
138
B
GLY
139
n
109
GLY
139
B
PRO
140
n
110
PRO
140
B
GLY
141
n
111
GLY
141
B
ILE
142
n
112
ILE
142
B
PRO
143
n
113
PRO
143
B
ASP
144
n
114
ASP
144
B
HIS
145
n
115
HIS
145
B
PRO
146
n
116
PRO
146
B
LEU
147
n
117
LEU
147
B
ARG
148
n
118
ARG
148
B
LEU
149
n
119
LEU
149
B
LEU
150
n
120
LEU
150
B
ARG
151
n
121
ARG
151
B
ILE
152
n
122
ILE
152
B
GLY
153
n
123
GLY
153
B
ASN
154
n
124
ASN
154
B
GLN
155
n
125
GLN
155
B
ALA
156
n
126
ALA
156
B
PHE
157
n
127
PHE
157
B
LEU
158
n
128
LEU
158
B
GLN
159
n
129
GLN
159
B
GLU
160
n
130
GLU
160
B
PHE
161
n
131
PHE
161
B
VAL
162
n
132
VAL
162
B
LEU
163
n
133
LEU
163
B
PRO
164
n
134
PRO
164
B
PRO
165
n
135
PRO
165
B
VAL
166
n
136
VAL
166
B
GLN
167
n
137
GLN
167
B
LEU
168
n
138
LEU
168
B
PRO
169
n
139
PRO
169
B
GLN
170
n
140
GLN
170
B
TYR
171
n
141
TYR
171
B
PHE
172
n
142
PHE
172
B
THR
173
n
143
THR
173
B
PHE
174
n
144
PHE
174
B
ASP
175
n
145
ASP
175
B
LEU
176
n
146
LEU
176
B
THR
177
n
147
THR
177
B
ALA
178
n
148
ALA
178
B
LEU
179
n
149
LEU
179
B
LYS
180
n
150
LYS
180
B
LEU
181
n
151
LEU
181
B
ILE
182
n
152
ILE
182
B
THR
183
n
153
THR
183
B
GLN
184
n
154
GLN
184
B
PRO
185
n
155
PRO
185
B
LEU
186
n
156
LEU
186
B
PRO
187
n
157
PRO
187
B
ALA
188
n
158
ALA
188
B
ALA
189
n
159
ALA
189
B
THR
190
n
160
THR
190
B
TRP
191
n
161
TRP
191
B
THR
192
n
162
THR
192
B
n
163
193
B
n
164
194
B
n
165
195
B
n
166
196
B
n
167
197
B
n
168
198
B
n
169
199
B
n
170
200
B
n
171
201
B
n
172
202
B
n
173
203
B
n
174
204
B
n
175
205
B
n
176
206
B
n
177
207
B
n
178
208
B
n
179
209
B
n
180
210
B
n
181
211
B
n
182
212
B
U
1
n
1
U
1
R
G
2
n
2
G
2
R
A
3
n
3
A
3
R
U
1
n
1
U
1
S
G
2
n
2
G
2
S
A
3
n
3
A
3
S
author_and_software_defined_assembly
PQS
16
hexadecameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_555
y,x,-z+2/3
crystal symmetry operation
0.0000000000
0.0000000000
159.4533333333
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
4_555
-x,-y,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
10_555
-y,-x,-z+2/3
crystal symmetry operation
0.0000000000
0.0000000000
159.4533333333
A
N
ALA
101
A
N
ALA
71
A
O
SER
71
A
O
SER
41
A
N
ASN
80
A
N
ASN
50
A
O
ASP
175
A
O
ASP
145
A
N
LEU
176
A
N
LEU
146
A
O
TYR
120
A
O
TYR
90
A
N
PHE
125
A
N
PHE
95
A
O
LEU
132
A
O
LEU
102
A
N
VAL
135
A
N
VAL
105
A
O
GLN
155
A
O
GLN
125
B
N
ILE
94
B
N
ILE
64
B
O
ALA
77
B
O
ALA
47
B
N
ASN
80
B
N
ASN
50
B
O
ASP
175
B
O
ASP
145
B
N
LEU
176
B
N
LEU
146
B
O
TYR
120
B
O
TYR
90
B
N
PHE
125
B
N
PHE
95
B
O
LEU
132
B
O
LEU
102
B
N
VAL
135
B
N
VAL
105
B
O
GLN
155
B
O
GLN
125
B
N
ILE
94
B
N
ILE
64
B
O
ALA
77
B
O
ALA
47
B
O
PHE
73
B
O
PHE
43
B
N
LEU
98
B
N
LEU
68
1
A
CA
TRP
191
A
CA
TRP
161
1
Y
1
A
C
TRP
191
A
C
TRP
161
1
Y
1
A
O
TRP
191
A
O
TRP
161
1
Y
1
A
CB
TRP
191
A
CB
TRP
161
1
Y
1
A
CG
TRP
191
A
CG
TRP
161
1
Y
1
A
CD1
TRP
191
A
CD1
TRP
161
1
Y
1
A
CD2
TRP
191
A
CD2
TRP
161
1
Y
1
A
NE1
TRP
191
A
NE1
TRP
161
1
Y
1
A
CE2
TRP
191
A
CE2
TRP
161
1
Y
1
A
CE3
TRP
191
A
CE3
TRP
161
1
Y
1
A
CZ2
TRP
191
A
CZ2
TRP
161
1
Y
1
A
CZ3
TRP
191
A
CZ3
TRP
161
1
Y
1
A
CH2
TRP
191
A
CH2
TRP
161
1
Y
1
B
CA
THR
192
B
CA
THR
162
1
Y
1
B
C
THR
192
B
C
THR
162
1
Y
1
B
O
THR
192
B
O
THR
162
1
Y
1
B
CB
THR
192
B
CB
THR
162
1
Y
1
B
OG1
THR
192
B
OG1
THR
162
1
Y
1
B
CG2
THR
192
B
CG2
THR
162
1
Y
1
A
ASN
31
A
ASN
1
1
Y
1
A
SER
32
A
SER
2
1
Y
1
A
ASN
33
A
ASN
3
1
Y
1
A
THR
34
A
THR
4
1
Y
1
A
GLY
35
A
GLY
5
1
Y
1
A
PHE
36
A
PHE
6
1
Y
1
A
LEU
37
A
LEU
7
1
Y
1
A
THR
38
A
THR
8
1
Y
1
A
PRO
39
A
PRO
9
1
Y
1
A
GLU
40
A
GLU
10
1
Y
1
A
SER
41
A
SER
11
1
Y
1
A
VAL
42
A
VAL
12
1
Y
1
A
ASN
43
A
ASN
13
1
Y
1
A
GLY
44
A
GLY
14
1
Y
1
A
ASP
45
A
ASP
15
1
Y
1
A
THR
46
A
THR
16
1
Y
1
A
PRO
47
A
PRO
17
1
Y
1
A
SER
48
A
SER
18
1
Y
1
A
ASN
49
A
ASN
19
1
Y
1
A
PRO
50
A
PRO
20
1
Y
1
A
LEU
51
A
LEU
21
1
Y
1
A
ARG
52
A
ARG
22
1
Y
1
A
PRO
53
A
PRO
23
1
Y
1
A
ILE
54
A
ILE
24
1
Y
1
A
ALA
55
A
ALA
25
1
Y
1
A
ASP
56
A
ASP
26
1
Y
1
A
ASP
57
A
ASP
27
1
Y
1
A
THR
58
A
THR
28
1
Y
1
A
ILE
59
A
ILE
29
1
Y
1
A
ASP
60
A
ASP
30
1
Y
1
A
HIS
61
A
HIS
31
1
Y
1
A
ALA
62
A
ALA
32
1
Y
1
A
SER
63
A
SER
33
1
Y
1
A
HIS
64
A
HIS
34
1
Y
1
A
THR
65
A
THR
35
1
Y
1
A
PRO
66
A
PRO
36
1
Y
1
A
GLY
67
A
GLY
37
1
Y
1
A
SER
68
A
SER
38
1
Y
1
A
THR
192
A
THR
162
1
Y
1
A
ASP
193
A
ASP
163
1
Y
1
A
ASP
194
A
ASP
164
1
Y
1
A
THR
195
A
THR
165
1
Y
1
A
PRO
196
A
PRO
166
1
Y
1
A
THR
197
A
THR
167
1
Y
1
A
GLY
198
A
GLY
168
1
Y
1
A
SER
199
A
SER
169
1
Y
1
A
ASN
200
A
ASN
170
1
Y
1
A
GLY
201
A
GLY
171
1
Y
1
A
ALA
202
A
ALA
172
1
Y
1
A
LEU
203
A
LEU
173
1
Y
1
A
ARG
204
A
ARG
174
1
Y
1
A
PRO
205
A
PRO
175
1
Y
1
A
GLY
206
A
GLY
176
1
Y
1
A
ILE
207
A
ILE
177
1
Y
1
A
SER
208
A
SER
178
1
Y
1
A
PHE
209
A
PHE
179
1
Y
1
A
HIS
210
A
HIS
180
1
Y
1
A
PRO
211
A
PRO
181
1
Y
1
A
LYS
212
A
LYS
182
1
Y
1
B
ASN
31
B
ASN
1
1
Y
1
B
SER
32
B
SER
2
1
Y
1
B
ASN
33
B
ASN
3
1
Y
1
B
THR
34
B
THR
4
1
Y
1
B
GLY
35
B
GLY
5
1
Y
1
B
PHE
36
B
PHE
6
1
Y
1
B
LEU
37
B
LEU
7
1
Y
1
B
THR
38
B
THR
8
1
Y
1
B
PRO
39
B
PRO
9
1
Y
1
B
GLU
40
B
GLU
10
1
Y
1
B
SER
41
B
SER
11
1
Y
1
B
VAL
42
B
VAL
12
1
Y
1
B
ASN
43
B
ASN
13
1
Y
1
B
GLY
44
B
GLY
14
1
Y
1
B
ASP
45
B
ASP
15
1
Y
1
B
THR
46
B
THR
16
1
Y
1
B
PRO
47
B
PRO
17
1
Y
1
B
SER
48
B
SER
18
1
Y
1
B
ASN
49
B
ASN
19
1
Y
1
B
PRO
50
B
PRO
20
1
Y
1
B
LEU
51
B
LEU
21
1
Y
1
B
ARG
52
B
ARG
22
1
Y
1
B
PRO
53
B
PRO
23
1
Y
1
B
ILE
54
B
ILE
24
1
Y
1
B
ALA
55
B
ALA
25
1
Y
1
B
ASP
56
B
ASP
26
1
Y
1
B
ASP
57
B
ASP
27
1
Y
1
B
THR
58
B
THR
28
1
Y
1
B
ILE
59
B
ILE
29
1
Y
1
B
ASP
60
B
ASP
30
1
Y
1
B
HIS
61
B
HIS
31
1
Y
1
B
ALA
62
B
ALA
32
1
Y
1
B
SER
63
B
SER
33
1
Y
1
B
HIS
64
B
HIS
34
1
Y
1
B
THR
65
B
THR
35
1
Y
1
B
PRO
66
B
PRO
36
1
Y
1
B
GLY
67
B
GLY
37
1
Y
1
B
SER
68
B
SER
38
1
Y
1
B
ASP
193
B
ASP
163
1
Y
1
B
ASP
194
B
ASP
164
1
Y
1
B
THR
195
B
THR
165
1
Y
1
B
PRO
196
B
PRO
166
1
Y
1
B
THR
197
B
THR
167
1
Y
1
B
GLY
198
B
GLY
168
1
Y
1
B
SER
199
B
SER
169
1
Y
1
B
ASN
200
B
ASN
170
1
Y
1
B
GLY
201
B
GLY
171
1
Y
1
B
ALA
202
B
ALA
172
1
Y
1
B
LEU
203
B
LEU
173
1
Y
1
B
ARG
204
B
ARG
174
1
Y
1
B
PRO
205
B
PRO
175
1
Y
1
B
GLY
206
B
GLY
176
1
Y
1
B
ILE
207
B
ILE
177
1
Y
1
B
SER
208
B
SER
178
1
Y
1
B
PHE
209
B
PHE
179
1
Y
1
B
HIS
210
B
HIS
180
1
Y
1
B
PRO
211
B
PRO
181
1
Y
1
B
LYS
212
B
LYS
182
1
Y
1
-6.45
0.70
109.70
103.25
R
R
R
C1'
O4'
C4'
U
U
U
1
1
1
N
1
7.83
0.70
108.50
116.33
R
R
R
O4'
C1'
N1
U
U
U
1
1
1
N
1
-9.73
1.40
121.20
111.47
R
R
R
C6
N1
C1'
U
U
U
1
1
1
N
1
10.01
1.20
117.70
127.71
R
R
R
C2
N1
C1'
U
U
U
1
1
1
N
1
-8.13
0.70
109.70
101.57
S
S
S
C1'
O4'
C4'
U
U
U
1
1
1
N
1
-5.98
0.70
101.30
95.32
S
S
S
C3'
C2'
C1'
U
U
U
1
1
1
N
1
8.52
0.70
108.50
117.02
S
S
S
O4'
C1'
N1
U
U
U
1
1
1
N
1
-9.20
1.40
121.20
112.00
S
S
S
C6
N1
C1'
U
U
U
1
1
1
N
1
8.87
1.20
117.70
126.57
S
S
S
C2
N1
C1'
U
U
U
1
1
1
N
1
A
A
O
O
HOH
HOH
2003
2003
0.65
1_555
4_665
1
A
A
O
O
HOH
HOH
2032
2032
0.67
1_555
4_665
1
A
A
O
O
HOH
HOH
2001
2001
0.72
1_555
4_665
1
A
A
CL
CL
CL
CL
1201
1201
1.55
1_555
10_665
1
B
B
CL
CL
CL
CL
1202
1202
1.71
1_555
11_556
1
A
ALA
77
-172.12
-167.93
1
A
LEU
88
-39.44
127.88
1
A
LYS
90
-173.48
148.85
1
A
ALA
101
172.59
155.07
1
A
PHE
125
-145.57
-158.34
1
A
THR
129
-68.45
27.54
1
A
ASN
130
179.99
59.96
1
A
PRO
140
-66.80
-160.36
1
A
ALA
188
-65.25
92.00
1
A
ALA
189
-12.23
115.98
1
A
THR
190
86.82
165.19
1
B
LYS
86
34.18
49.20
1
B
VAL
87
-143.93
59.41
1
B
LYS
90
174.88
151.62
1
B
ALA
128
-46.35
-70.83
1
B
ASN
130
149.70
58.39
1
B
PRO
140
-68.38
-168.99
1
B
LEU
149
-37.46
-28.42
1
B
PRO
165
-58.56
97.39
1
B
ALA
189
-171.95
122.90
1
B
THR
190
-70.00
60.38
1
B
TRP
191
-173.64
-172.61
39.664
3.04
1.52
0
3.04
0
-4.56
33% OF THE PROTEIN RESIDUES ARE DISORDERED, ACCOUNTING FOR VERY HIGH R-VALUES.
0.329
0.305
0.306
2.60
60
995
13004
7.1
98
17.547
0.369
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.568
0.357
PDB ENTRY 1H2C
2.60
60
109
2149
2
132
1906
2.600
60.000
1H2D
63464
0.08500
1
4.5000
4.400
97.8
data reduction
MOSFLM
data scaling
SCALA
phasing
BEAST
phasing
AMoRE
refinement
REFMAC
Ebola virus matrix protein VP40 N-terminal domain in complex with RNA (Low-resolution VP40[31-212] variant).
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
THE BIOLOGICALLY RELEVANT UNIT COMPRISES AN
OCTAMEROF THE PROTEIN WHICH IS IN COMPLEX WITH
RNA IN THISENTRY MAKING AN HEXADECAMER. SEE REMARK
400 BELOW
A
SER
107
A
SER
77
HELX_P
A
ALA
118
A
ALA
88
1
1
12
A
LEU
147
A
LEU
117
HELX_P
A
ILE
152
A
ILE
122
1
2
6
A
GLN
159
A
GLN
129
HELX_P
A
LEU
163
A
LEU
133
1
3
5
B
SER
107
B
SER
77
HELX_P
B
ALA
118
B
ALA
88
1
4
12
B
LEU
147
B
LEU
117
HELX_P
B
ILE
152
B
ILE
122
1
5
6
B
GLN
159
B
GLN
129
HELX_P
B
LEU
163
B
LEU
133
1
6
5
VIRUS/VIRAL PROTEIN
VIRUS/VIRAL PROTEIN, FILOVIRUS, EBOLA VIRUS, MATRIX PROTEIN VP40, ASSEMBLY, BUDDING, VIRUS-VIRAL PROTEIN complex
VP40_EBOZM
UNP
1
Q05128
1H2D
PDB
2
1H2D
31
212
1H2D
31
212
Q05128
A
1
1
182
31
212
1H2D
31
212
Q05128
B
1
1
182
1
3
1H2D
1
3
1H2D
R
2
1
3
1
3
1H2D
1
3
1H2D
S
2
1
3
6
6
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
88
A
LEU
58
A
ASP
102
A
ASP
72
A
SER
70
A
SER
40
A
ILE
82
A
ILE
52
A
THR
173
A
THR
143
A
LEU
186
A
LEU
156
A
TYR
120
A
TYR
90
A
PHE
125
A
PHE
95
A
LEU
132
A
LEU
102
A
ARG
137
A
ARG
107
A
ASN
154
A
ASN
124
A
LEU
158
A
LEU
128
B
LEU
88
B
LEU
58
B
ILE
94
B
ILE
64
B
SER
70
B
SER
40
B
ILE
82
B
ILE
52
B
THR
173
B
THR
143
B
LEU
186
B
LEU
156
B
TYR
120
B
TYR
90
B
PHE
125
B
PHE
95
B
LEU
132
B
LEU
102
B
ARG
137
B
ARG
107
B
ASN
154
B
ASN
124
B
LEU
158
B
LEU
128
B
LEU
88
B
LEU
58
B
ILE
94
B
ILE
64
B
SER
70
B
SER
40
B
ILE
82
B
ILE
52
B
PRO
97
B
PRO
67
B
ASP
102
B
ASP
72
180
P 62 2 2