0.008045
0.000000
0.000000
0.000000
0.021295
0.000000
0.000000
0.000000
0.018573
0.00000
0.00000
0.00000
Gordeliy, V.I.
Labahn, J.
Moukhametzianov, R.
Efremov, R.
Granzin, J.
Schlesinger, R.
Bueldt, G.
Savopol, T.
Scheidig, A.
Klare, J.P.
Engelhard, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
124.300
46.960
53.840
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C14 H28 O6
292.369
n
octyl beta-D-glucopyranoside
Beta-Octylglucoside; octyl beta-D-glucoside; octyl D-glucoside; octyl glucoside
D-saccharide
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C20 H28 O
284.436
RETINAL
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
R
C
N
75
N
O
N
76
R
C
N
77
N
O
N
78
S
C
N
79
N
O
N
80
S
C
N
81
N
O
N
82
R
C
N
83
N
O
N
84
N
C
N
85
N
O
N
86
N
C
N
87
N
C
N
88
N
C
N
89
N
C
N
90
N
C
N
91
N
C
N
92
N
C
N
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
N
N
123
S
C
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
O
N
130
N
N
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
N
N
143
S
C
N
144
N
C
N
145
N
O
N
146
N
C
N
147
N
C
N
148
N
C
N
149
N
O
N
150
N
O
N
151
N
O
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
N
N
162
N
C
N
163
N
C
N
164
N
O
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
N
N
172
S
C
N
173
N
C
N
174
N
O
N
175
N
C
Y
176
N
C
Y
177
N
N
Y
178
N
C
Y
179
N
C
Y
180
N
N
N
181
N
O
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
N
N
196
S
C
N
197
N
C
N
198
N
O
N
199
S
C
N
200
N
C
N
201
N
C
N
202
N
C
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
O
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
N
N
240
S
C
N
241
N
C
N
242
N
O
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
C
N
247
N
N
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
N
N
265
S
C
N
266
N
C
N
267
N
O
N
268
N
C
N
269
N
C
N
270
N
S
N
271
N
C
N
272
N
O
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
N
N
285
S
C
N
286
N
C
N
287
N
O
N
288
N
C
Y
289
N
C
Y
290
N
C
Y
291
N
C
Y
292
N
C
Y
293
N
C
Y
294
N
C
N
295
N
O
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
N
312
N
C
N
313
N
C
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
C
N
325
N
C
N
326
N
C
N
327
N
C
N
328
N
C
N
329
N
C
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
C
N
335
N
C
N
336
N
C
N
337
N
C
N
338
N
C
N
339
N
O
N
340
N
C
N
341
N
C
N
342
N
C
N
343
N
C
N
344
N
C
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
O
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
N
N
388
S
C
N
389
N
C
N
390
N
O
N
391
R
C
N
392
N
O
N
393
N
C
N
394
N
O
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
N
N
405
S
C
N
406
N
C
N
407
N
O
N
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
N
Y
413
N
C
Y
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
N
418
N
O
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
N
N
432
S
C
N
433
N
C
N
434
N
O
N
435
N
C
Y
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
C
N
442
N
O
N
443
N
O
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
N
N
456
S
C
N
457
N
C
N
458
N
O
N
459
N
C
N
460
N
C
N
461
N
C
N
462
N
O
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
Y
175
N
sing
Y
176
N
doub
Y
177
N
doub
N
178
N
sing
Y
179
N
sing
N
180
N
sing
Y
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
doub
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
Y
283
N
doub
Y
284
N
sing
Y
285
N
sing
N
286
N
sing
Y
287
N
doub
N
288
N
sing
Y
289
N
doub
N
290
N
sing
Y
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
E
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
E
doub
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
E
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
E
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
doub
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
doub
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
doub
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
Y
401
N
doub
Y
402
N
sing
Y
403
N
sing
N
404
N
sing
Y
405
N
doub
Y
406
N
sing
Y
407
N
sing
N
408
N
sing
Y
409
N
sing
Y
410
N
doub
N
411
N
sing
Y
412
N
doub
N
413
N
sing
Y
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
doub
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
Y
429
N
doub
Y
430
N
sing
Y
431
N
sing
N
432
N
sing
Y
433
N
doub
N
434
N
sing
Y
435
N
doub
N
436
N
sing
Y
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
doub
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
UK
Nature
NATUAS
0006
0028-0836
419
484
10.1038/NATURE01109
12368857
Molecular Basis of Transmembrane Signalling by Sensory Rhodopsin II-Transducer Complex
2002
10.2210/pdb1h2s/pdb
pdb_00001h2s
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
SINGLE WAVELENGTH
M
x-ray
1
0.934
1.0
ID14-1
ESRF
0.934
SYNCHROTRON
ESRF BEAMLINE ID14-1
HIS-TAG
24085.465
SENSORY RHODOPSIN II
RESIDUES 1-225
1
man
polymer
HIS-TAG
5714.688
SENSORY RHODOPSIN II TRANSDUCER
RESIDUES 23-82
1
man
polymer
292.369
octyl beta-D-glucopyranoside
1
man
non-polymer
284.436
RETINAL
1
syn
non-polymer
18.015
water
40
nat
water
TRANSDUCER HTR II FRAGMENT , HTR-II, METHYL-ACCEPTING PHOTOTAXIS PROTEIN II, MPP-II
no
no
MVGLTTLFWLGAIGMLVGTLAFAWAGRDAGSGERRYYVTLVGISGIAAVAYVVMALGVGWVPVAERTVFAPRYIDWILTT
PLIVYFLGLLAGLDSREFGIVITLNTVVMLAGFAGAMVPGIERYALFGMGAVAFLGLVYYLVGPMTESASQRSSGIKSLY
VRLRNLTVILWAIYPFIWLLGPPGVALLTPTVDVALIVYLDLVTKVGFGFIALDAAATLRAEHGE
MVGLTTLFWLGAIGMLVGTLAFAWAGRDAGSGERRYYVTLVGISGIAAVAYVVMALGVGWVPVAERTVFAPRYIDWILTT
PLIVYFLGLLAGLDSREFGIVITLNTVVMLAGFAGAMVPGIERYALFGMGAVAFLGLVYYLVGPMTESASQRSSGIKSLY
VRLRNLTVILWAIYPFIWLLGPPGVALLTPTVDVALIVYLDLVTKVGFGFIALDAAATLRAEHGE
A
polypeptide(L)
no
no
GAVFIFVGALTVLFGAIAYGEVTAAAATGDAAAVQEAAVSAILGLIILLGINLGLVAATL
GAVFIFVGALTVLFGAIAYGEVTAAAATGDAAAVQEAAVSAILGLIILLGINLGLVAATL
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
2257
NATRONOMONAS PHARAONIS
469008
ESCHERICHIA COLI
BL21(DE3)
PET27BMOD
sample
2257
NATRONOMONAS PHARAONIS
469008
ESCHERICHIA COLI
BL21(DE3)
PET27BMOD
1
2.64
53.35
LIPIDIC CUBIC PHASE
5.10
150 MM NACL, 25 MM NAKPI 5.1 0.8% B-OCTYLGLUCOSID , MONOVACCENIN (CUBIC PHASE) PRECIPITATED BY 1 M NA/KPI 5.8 AT 22 C, pH 5.10
295
database_PDB_rev
database_PDB_rev_record
exptl_crystal_grow
pdbx_database_proc
pdbx_database_status
pdbx_unobs_or_zero_occ_residues
struct_conn
database_PDB_rev
database_PDB_rev_record
exptl_crystal_grow
pdbx_validate_close_contact
struct_biol
struct_conn
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_database_status
pdbx_entity_nonpoly
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_unobs_or_zero_occ_residues
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Version format compliance
Advisory
Data collection
Derived calculations
Experimental preparation
Other
Advisory
Data collection
Derived calculations
Experimental preparation
Data collection
Derived calculations
Other
Structure summary
Advisory
Data collection
Database references
Refinement description
Structure summary
1
0
2002-10-10
1
1
2011-05-08
1
2
2011-07-13
1
3
2019-05-08
1
4
2019-05-22
1
5
2020-07-29
1
6
2023-12-13
_exptl_crystal_grow.temp
_pdbx_database_status.recvd_author_approval
_struct_conn.pdbx_leaving_atom_flag
_exptl_crystal_grow.method
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_database_status.status_code_sf
_pdbx_entity_nonpoly.name
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
b-octylglucoside
SENSORY RHODOPSIN II
SENSORY RHODOPSIN II
SENSORY RHODOPSIN II
CRYSTAL STRUCTURE OF SENSORY RHODOPSIN II AT 2.4 ANGSTROMS:INSIGHTS INTO COLOR TUNING AND TRANSDUCER INTERACTION
PDBE
Y
PDBE
2002-08-15
REL
REL
BOG
octyl beta-D-glucopyranoside
RET
RETINAL
HOH
water
SENSORY RHODOPSIN II
INVOLVED IN CONTROL OF PHOTOTAXIS. SEEMS TO ACTIVATE
A METHYL-ACCEPTING PROTEIN (HTR-II).
SENSORY RHODOPSIN II TRANSDUCER (HTR-II)
TRANSDUCES SIGNALS FROM THE PHOTOTAXIS RECEPTOR
SENSORY RHODOPSIN II TO FLAGELLAR MOTOR.
1JGJ
PDB ENTRY 1JGJ
PDB
experimental model
BOG
301
3
BOG
BOG
301
A
RET
302
4
RET
RET
302
A
HOH
2001
5
HOH
HOH
2001
A
HOH
2002
5
HOH
HOH
2002
A
HOH
2003
5
HOH
HOH
2003
A
HOH
2004
5
HOH
HOH
2004
A
HOH
2005
5
HOH
HOH
2005
A
HOH
2006
5
HOH
HOH
2006
A
HOH
2007
5
HOH
HOH
2007
A
HOH
2008
5
HOH
HOH
2008
A
HOH
2009
5
HOH
HOH
2009
A
HOH
2010
5
HOH
HOH
2010
A
HOH
2011
5
HOH
HOH
2011
A
HOH
2012
5
HOH
HOH
2012
A
HOH
2013
5
HOH
HOH
2013
A
HOH
2014
5
HOH
HOH
2014
A
HOH
2015
5
HOH
HOH
2015
A
HOH
2016
5
HOH
HOH
2016
A
HOH
2017
5
HOH
HOH
2017
A
HOH
2018
5
HOH
HOH
2018
A
HOH
2019
5
HOH
HOH
2019
A
HOH
2020
5
HOH
HOH
2020
A
HOH
2021
5
HOH
HOH
2021
A
HOH
2022
5
HOH
HOH
2022
A
HOH
2023
5
HOH
HOH
2023
A
HOH
2024
5
HOH
HOH
2024
A
HOH
2025
5
HOH
HOH
2025
A
HOH
2026
5
HOH
HOH
2026
A
HOH
2027
5
HOH
HOH
2027
A
HOH
2028
5
HOH
HOH
2028
A
HOH
2029
5
HOH
HOH
2029
A
HOH
2030
5
HOH
HOH
2030
A
HOH
2031
5
HOH
HOH
2031
A
HOH
2032
5
HOH
HOH
2032
A
HOH
2033
5
HOH
HOH
2033
A
HOH
2034
5
HOH
HOH
2034
A
HOH
2035
5
HOH
HOH
2035
A
HOH
2036
5
HOH
HOH
2036
A
HOH
2037
5
HOH
HOH
2037
A
HOH
2038
5
HOH
HOH
2038
A
HOH
2039
5
HOH
HOH
2039
A
HOH
2001
5
HOH
HOH
2001
B
MET
1
n
1
MET
1
A
VAL
2
n
2
VAL
2
A
GLY
3
n
3
GLY
3
A
LEU
4
n
4
LEU
4
A
THR
5
n
5
THR
5
A
THR
6
n
6
THR
6
A
LEU
7
n
7
LEU
7
A
PHE
8
n
8
PHE
8
A
TRP
9
n
9
TRP
9
A
LEU
10
n
10
LEU
10
A
GLY
11
n
11
GLY
11
A
ALA
12
n
12
ALA
12
A
ILE
13
n
13
ILE
13
A
GLY
14
n
14
GLY
14
A
MET
15
n
15
MET
15
A
LEU
16
n
16
LEU
16
A
VAL
17
n
17
VAL
17
A
GLY
18
n
18
GLY
18
A
THR
19
n
19
THR
19
A
LEU
20
n
20
LEU
20
A
ALA
21
n
21
ALA
21
A
PHE
22
n
22
PHE
22
A
ALA
23
n
23
ALA
23
A
TRP
24
n
24
TRP
24
A
ALA
25
n
25
ALA
25
A
GLY
26
n
26
GLY
26
A
ARG
27
n
27
ARG
27
A
ASP
28
n
28
ASP
28
A
ALA
29
n
29
ALA
29
A
GLY
30
n
30
GLY
30
A
SER
31
n
31
SER
31
A
GLY
32
n
32
GLY
32
A
GLU
33
n
33
GLU
33
A
ARG
34
n
34
ARG
34
A
ARG
35
n
35
ARG
35
A
TYR
36
n
36
TYR
36
A
TYR
37
n
37
TYR
37
A
VAL
38
n
38
VAL
38
A
THR
39
n
39
THR
39
A
LEU
40
n
40
LEU
40
A
VAL
41
n
41
VAL
41
A
GLY
42
n
42
GLY
42
A
ILE
43
n
43
ILE
43
A
SER
44
n
44
SER
44
A
GLY
45
n
45
GLY
45
A
ILE
46
n
46
ILE
46
A
ALA
47
n
47
ALA
47
A
ALA
48
n
48
ALA
48
A
VAL
49
n
49
VAL
49
A
ALA
50
n
50
ALA
50
A
TYR
51
n
51
TYR
51
A
VAL
52
n
52
VAL
52
A
VAL
53
n
53
VAL
53
A
MET
54
n
54
MET
54
A
ALA
55
n
55
ALA
55
A
LEU
56
n
56
LEU
56
A
GLY
57
n
57
GLY
57
A
VAL
58
n
58
VAL
58
A
GLY
59
n
59
GLY
59
A
TRP
60
n
60
TRP
60
A
VAL
61
n
61
VAL
61
A
PRO
62
n
62
PRO
62
A
VAL
63
n
63
VAL
63
A
ALA
64
n
64
ALA
64
A
GLU
65
n
65
GLU
65
A
ARG
66
n
66
ARG
66
A
THR
67
n
67
THR
67
A
VAL
68
n
68
VAL
68
A
PHE
69
n
69
PHE
69
A
ALA
70
n
70
ALA
70
A
PRO
71
n
71
PRO
71
A
ARG
72
n
72
ARG
72
A
TYR
73
n
73
TYR
73
A
ILE
74
n
74
ILE
74
A
ASP
75
n
75
ASP
75
A
TRP
76
n
76
TRP
76
A
ILE
77
n
77
ILE
77
A
LEU
78
n
78
LEU
78
A
THR
79
n
79
THR
79
A
THR
80
n
80
THR
80
A
PRO
81
n
81
PRO
81
A
LEU
82
n
82
LEU
82
A
ILE
83
n
83
ILE
83
A
VAL
84
n
84
VAL
84
A
TYR
85
n
85
TYR
85
A
PHE
86
n
86
PHE
86
A
LEU
87
n
87
LEU
87
A
GLY
88
n
88
GLY
88
A
LEU
89
n
89
LEU
89
A
LEU
90
n
90
LEU
90
A
ALA
91
n
91
ALA
91
A
GLY
92
n
92
GLY
92
A
LEU
93
n
93
LEU
93
A
ASP
94
n
94
ASP
94
A
SER
95
n
95
SER
95
A
ARG
96
n
96
ARG
96
A
GLU
97
n
97
GLU
97
A
PHE
98
n
98
PHE
98
A
GLY
99
n
99
GLY
99
A
ILE
100
n
100
ILE
100
A
VAL
101
n
101
VAL
101
A
ILE
102
n
102
ILE
102
A
THR
103
n
103
THR
103
A
LEU
104
n
104
LEU
104
A
ASN
105
n
105
ASN
105
A
THR
106
n
106
THR
106
A
VAL
107
n
107
VAL
107
A
VAL
108
n
108
VAL
108
A
MET
109
n
109
MET
109
A
LEU
110
n
110
LEU
110
A
ALA
111
n
111
ALA
111
A
GLY
112
n
112
GLY
112
A
PHE
113
n
113
PHE
113
A
ALA
114
n
114
ALA
114
A
GLY
115
n
115
GLY
115
A
ALA
116
n
116
ALA
116
A
MET
117
n
117
MET
117
A
VAL
118
n
118
VAL
118
A
PRO
119
n
119
PRO
119
A
GLY
120
n
120
GLY
120
A
ILE
121
n
121
ILE
121
A
GLU
122
n
122
GLU
122
A
ARG
123
n
123
ARG
123
A
TYR
124
n
124
TYR
124
A
ALA
125
n
125
ALA
125
A
LEU
126
n
126
LEU
126
A
PHE
127
n
127
PHE
127
A
GLY
128
n
128
GLY
128
A
MET
129
n
129
MET
129
A
GLY
130
n
130
GLY
130
A
ALA
131
n
131
ALA
131
A
VAL
132
n
132
VAL
132
A
ALA
133
n
133
ALA
133
A
PHE
134
n
134
PHE
134
A
LEU
135
n
135
LEU
135
A
GLY
136
n
136
GLY
136
A
LEU
137
n
137
LEU
137
A
VAL
138
n
138
VAL
138
A
TYR
139
n
139
TYR
139
A
TYR
140
n
140
TYR
140
A
LEU
141
n
141
LEU
141
A
VAL
142
n
142
VAL
142
A
GLY
143
n
143
GLY
143
A
PRO
144
n
144
PRO
144
A
MET
145
n
145
MET
145
A
THR
146
n
146
THR
146
A
GLU
147
n
147
GLU
147
A
SER
148
n
148
SER
148
A
ALA
149
n
149
ALA
149
A
SER
150
n
150
SER
150
A
GLN
151
n
151
GLN
151
A
ARG
152
n
152
ARG
152
A
SER
153
n
153
SER
153
A
SER
154
n
154
SER
154
A
GLY
155
n
155
GLY
155
A
ILE
156
n
156
ILE
156
A
LYS
157
n
157
LYS
157
A
SER
158
n
158
SER
158
A
LEU
159
n
159
LEU
159
A
TYR
160
n
160
TYR
160
A
VAL
161
n
161
VAL
161
A
ARG
162
n
162
ARG
162
A
LEU
163
n
163
LEU
163
A
ARG
164
n
164
ARG
164
A
ASN
165
n
165
ASN
165
A
LEU
166
n
166
LEU
166
A
THR
167
n
167
THR
167
A
VAL
168
n
168
VAL
168
A
ILE
169
n
169
ILE
169
A
LEU
170
n
170
LEU
170
A
TRP
171
n
171
TRP
171
A
ALA
172
n
172
ALA
172
A
ILE
173
n
173
ILE
173
A
TYR
174
n
174
TYR
174
A
PRO
175
n
175
PRO
175
A
PHE
176
n
176
PHE
176
A
ILE
177
n
177
ILE
177
A
TRP
178
n
178
TRP
178
A
LEU
179
n
179
LEU
179
A
LEU
180
n
180
LEU
180
A
GLY
181
n
181
GLY
181
A
PRO
182
n
182
PRO
182
A
PRO
183
n
183
PRO
183
A
GLY
184
n
184
GLY
184
A
VAL
185
n
185
VAL
185
A
ALA
186
n
186
ALA
186
A
LEU
187
n
187
LEU
187
A
LEU
188
n
188
LEU
188
A
THR
189
n
189
THR
189
A
PRO
190
n
190
PRO
190
A
THR
191
n
191
THR
191
A
VAL
192
n
192
VAL
192
A
ASP
193
n
193
ASP
193
A
VAL
194
n
194
VAL
194
A
ALA
195
n
195
ALA
195
A
LEU
196
n
196
LEU
196
A
ILE
197
n
197
ILE
197
A
VAL
198
n
198
VAL
198
A
TYR
199
n
199
TYR
199
A
LEU
200
n
200
LEU
200
A
ASP
201
n
201
ASP
201
A
LEU
202
n
202
LEU
202
A
VAL
203
n
203
VAL
203
A
THR
204
n
204
THR
204
A
LYS
205
n
205
LYS
205
A
VAL
206
n
206
VAL
206
A
GLY
207
n
207
GLY
207
A
PHE
208
n
208
PHE
208
A
GLY
209
n
209
GLY
209
A
PHE
210
n
210
PHE
210
A
ILE
211
n
211
ILE
211
A
ALA
212
n
212
ALA
212
A
LEU
213
n
213
LEU
213
A
ASP
214
n
214
ASP
214
A
ALA
215
n
215
ALA
215
A
ALA
216
n
216
ALA
216
A
ALA
217
n
217
ALA
217
A
THR
218
n
218
THR
218
A
LEU
219
n
219
LEU
219
A
ARG
220
n
220
ARG
220
A
ALA
221
n
221
ALA
221
A
GLU
222
n
222
GLU
222
A
HIS
223
n
223
HIS
223
A
GLY
224
n
224
GLY
224
A
GLU
225
n
225
GLU
225
A
GLY
23
n
1
GLY
23
B
ALA
24
n
2
ALA
24
B
VAL
25
n
3
VAL
25
B
PHE
26
n
4
PHE
26
B
ILE
27
n
5
ILE
27
B
PHE
28
n
6
PHE
28
B
VAL
29
n
7
VAL
29
B
GLY
30
n
8
GLY
30
B
ALA
31
n
9
ALA
31
B
LEU
32
n
10
LEU
32
B
THR
33
n
11
THR
33
B
VAL
34
n
12
VAL
34
B
LEU
35
n
13
LEU
35
B
PHE
36
n
14
PHE
36
B
GLY
37
n
15
GLY
37
B
ALA
38
n
16
ALA
38
B
ILE
39
n
17
ILE
39
B
ALA
40
n
18
ALA
40
B
TYR
41
n
19
TYR
41
B
GLY
42
n
20
GLY
42
B
GLU
43
n
21
GLU
43
B
VAL
44
n
22
VAL
44
B
THR
45
n
23
THR
45
B
ALA
46
n
24
ALA
46
B
ALA
47
n
25
ALA
47
B
ALA
48
n
26
ALA
48
B
ALA
49
n
27
ALA
49
B
THR
50
n
28
THR
50
B
GLY
51
n
29
GLY
51
B
ASP
52
n
30
ASP
52
B
ALA
53
n
31
ALA
53
B
ALA
54
n
32
ALA
54
B
ALA
55
n
33
ALA
55
B
VAL
56
n
34
VAL
56
B
GLN
57
n
35
GLN
57
B
GLU
58
n
36
GLU
58
B
ALA
59
n
37
ALA
59
B
ALA
60
n
38
ALA
60
B
VAL
61
n
39
VAL
61
B
SER
62
n
40
SER
62
B
ALA
63
n
41
ALA
63
B
ILE
64
n
42
ILE
64
B
LEU
65
n
43
LEU
65
B
GLY
66
n
44
GLY
66
B
LEU
67
n
45
LEU
67
B
ILE
68
n
46
ILE
68
B
ILE
69
n
47
ILE
69
B
LEU
70
n
48
LEU
70
B
LEU
71
n
49
LEU
71
B
GLY
72
n
50
GLY
72
B
ILE
73
n
51
ILE
73
B
ASN
74
n
52
ASN
74
B
LEU
75
n
53
LEU
75
B
GLY
76
n
54
GLY
76
B
LEU
77
n
55
LEU
77
B
VAL
78
n
56
VAL
78
B
ALA
79
n
57
ALA
79
B
ALA
80
n
58
ALA
80
B
THR
81
n
59
THR
81
B
LEU
82
n
60
LEU
82
B
author_and_software_defined_assembly
PQS
4
tetrameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_565
-x,-y+1,z
crystal symmetry operation
0.0000000000
46.9600000000
0.0000000000
A
N
VAL
61
A
N
VAL
61
A
O
VAL
68
A
O
VAL
68
1
B
GLY
23
B
GLY
1
0
Y
1
A
A
NH2
O6
ARG
BOG
35
301
1.66
1
A
A
NZ
C14
LYS
RET
205
302
2.14
1
A
VAL
2
77.40
87.78
1
A
PRO
62
-69.03
66.40
1
A
ALA
64
-9.81
87.92
PROTEIN.LINK
PROTEIN.TOP
PROTEIN_REP.PARAM
WATER.TOP
WATER_REP.PARAM
WATER_REP.PARAM
BOG.PARAM
BOG.TOP
32.3815
-2.111
0.000
0.000
-1.799
0.000
3.910
0.2578
0.2255
0.2255
1.93
60.
1143
23156
4.7
94.7
RANDOM
1000
1
RESTRAINED
THROUGHOUT
0.
MOLECULAR REPLACEMENT
PDB ENTRY 1JGJ
FLAT
0.26
0.23
0.14
0.04
1.93
60.
40
2187
40
0
2107
0.009247
1.07126
16.98526
0.79506
0.2720
0.2352
2.00
77
1765
10
1.930
60.000
1H2S
23156
0.000
0.06200
1
5.5000
3.500
94.7
refinement
CNS
1.0
data reduction
MOSFLM
data scaling
SCALA
phasing
MOLREP
Molecular basis of transmenbrane signalling by sensory rhodopsin II-transducer complex
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
A
GLY
3
A
GLY
3
HELX_P
A
GLY
26
A
GLY
26
1
1
24
A
GLU
33
A
GLU
33
HELX_P
A
LEU
56
A
LEU
56
1
2
24
A
ALA
70
A
ALA
70
HELX_P
A
GLY
92
A
GLY
92
1
3
23
A
ASP
94
A
ASP
94
HELX_P
A
VAL
118
A
VAL
118
1
4
25
A
ILE
121
A
ILE
121
HELX_P
A
GLY
143
A
GLY
143
1
5
23
A
GLY
143
A
GLY
143
HELX_P
A
SER
150
A
SER
150
1
6
8
A
SER
153
A
SER
153
HELX_P
A
ALA
172
A
ALA
172
1
7
20
A
ILE
173
A
ILE
173
HELX_P
A
GLY
181
A
GLY
181
1
8
9
A
THR
189
A
THR
189
HELX_P
A
THR
204
A
THR
204
1
9
16
A
VAL
206
A
VAL
206
HELX_P
A
HIS
223
A
HIS
223
1
10
18
B
GLY
23
B
GLY
1
HELX_P
B
GLY
51
B
GLY
29
1
11
29
B
ASP
52
B
ASP
30
HELX_P
B
LEU
82
B
LEU
60
1
12
31
covale
1.107
one
A
LYS
205
A
NZ
LYS
205
1_555
A
RET
302
D
C15
RET
1_555
MEMBRANE PROTEIN
MEMBRANE PROTEIN, MENBRANE PROTEIN COMPLEX, SIGNAL TRANSDUCTION
BACT_NATPH
UNP
1
P42196
HTR2_NATPH
UNP
2
P42259
1
225
1H2S
1
225
P42196
A
1
1
225
23
82
1H2S
23
82
P42259
B
2
1
60
2
anti-parallel
A
TRP
60
A
TRP
60
A
VAL
61
A
VAL
61
A
VAL
68
A
VAL
68
A
PHE
69
A
PHE
69
18
P 21 21 2