0.009161
0.000000
0.000000
0.000000
0.009161
0.000000
0.000000
0.000000
0.009161
0.00000
0.00000
0.00000
Debreczeni, J.E.
Bunkoczi, G.
Girmann, B.
Sheldrick, G.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.00
90.00
90.00
109.157
109.157
109.157
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C5 H8 N O2 X2
114.123
y
GLU/GLN AMBIGUOUS
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
59
393
10.1107/S0907444902020917
12554963
In-House Phase Determination of the Lima Bean Trypsin Inhibitor: A Low-Resolution Sulfur-Sad Case
2003
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
IMAGE PLATE
2002-04-15
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
0.8431
1.0
BW7B
EMBL/DESY, HAMBURG
0.8431
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE BW7B
9043.960
BOWMAN-BIRK TYPE PROTEINASE INHIBITOR
1
nat
polymer
18.015
water
78
nat
water
no
no
SGHHEHSTDZPSZSSKPCCDHCSCTKSIPPQCRCTDLRLDSCHSACKSCICTLSIPAQCVCDDIDDFCYEPCKSSHSDDD
NNN
SGHHEHSTDZPSZSSKPCCDHCSCTKSIPPQCRCTDLRLDSCHSACKSCICTLSIPAQCVCDDIDDFCYEPCKSSHSDDD
NNN
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
LIMA BEAN
sample
3884
SEED
PHASEOLUS LUNATUS
1
6.02
79.5
PHASED USING IN-HOUSE SULFUR-SAD DATA
7.50
0.6 M K,NA-TARTRATE, 0.1 M HEPES PH 7.5
pdbx_database_proc
pdbx_database_status
refine
diffrn_source
repository
Initial release
Version format compliance
Version format compliance
Data collection
Other
Refinement description
Data collection
1
0
2003-02-06
1
1
2011-05-08
1
2
2011-07-13
1
3
2019-05-22
1
4
2019-07-24
_pdbx_database_status.recvd_author_approval
_refine.pdbx_ls_cross_valid_method
_diffrn_source.pdbx_synchrotron_site
PDBE
Y
PDBE
2002-08-21
REL
HOH
water
BELONGS TO THE BOWMAN-BIRK SERINE PROTEASE INHIBITOR
FAMILY.
HOH
2001
2
HOH
HOH
2001
A
HOH
2002
2
HOH
HOH
2002
A
HOH
2003
2
HOH
HOH
2003
A
HOH
2004
2
HOH
HOH
2004
A
HOH
2005
2
HOH
HOH
2005
A
HOH
2006
2
HOH
HOH
2006
A
HOH
2007
2
HOH
HOH
2007
A
HOH
2008
2
HOH
HOH
2008
A
HOH
2009
2
HOH
HOH
2009
A
HOH
2010
2
HOH
HOH
2010
A
HOH
2011
2
HOH
HOH
2011
A
HOH
2012
2
HOH
HOH
2012
A
HOH
2013
2
HOH
HOH
2013
A
HOH
2014
2
HOH
HOH
2014
A
HOH
2015
2
HOH
HOH
2015
A
HOH
2016
2
HOH
HOH
2016
A
HOH
2017
2
HOH
HOH
2017
A
HOH
2018
2
HOH
HOH
2018
A
HOH
2019
2
HOH
HOH
2019
A
HOH
2020
2
HOH
HOH
2020
A
HOH
2021
2
HOH
HOH
2021
A
HOH
2022
2
HOH
HOH
2022
A
HOH
2023
2
HOH
HOH
2023
A
HOH
2024
2
HOH
HOH
2024
A
HOH
2025
2
HOH
HOH
2025
A
HOH
2026
2
HOH
HOH
2026
A
HOH
2027
2
HOH
HOH
2027
A
HOH
2028
2
HOH
HOH
2028
A
HOH
2029
2
HOH
HOH
2029
A
HOH
2030
2
HOH
HOH
2030
A
HOH
2031
2
HOH
HOH
2031
A
HOH
2032
2
HOH
HOH
2032
A
HOH
2033
2
HOH
HOH
2033
A
HOH
2034
2
HOH
HOH
2034
A
HOH
2035
2
HOH
HOH
2035
A
HOH
2036
2
HOH
HOH
2036
A
HOH
2037
2
HOH
HOH
2037
A
HOH
2038
2
HOH
HOH
2038
A
HOH
2039
2
HOH
HOH
2039
A
HOH
2040
2
HOH
HOH
2040
A
HOH
2041
2
HOH
HOH
2041
A
HOH
2042
2
HOH
HOH
2042
A
HOH
2043
2
HOH
HOH
2043
A
HOH
2044
2
HOH
HOH
2044
A
HOH
2045
2
HOH
HOH
2045
A
HOH
2046
2
HOH
HOH
2046
A
HOH
2047
2
HOH
HOH
2047
A
HOH
2048
2
HOH
HOH
2048
A
HOH
2049
2
HOH
HOH
2049
A
HOH
2050
2
HOH
HOH
2050
A
HOH
2051
2
HOH
HOH
2051
A
HOH
2052
2
HOH
HOH
2052
A
HOH
2053
2
HOH
HOH
2053
A
HOH
2054
2
HOH
HOH
2054
A
HOH
2055
2
HOH
HOH
2055
A
HOH
2056
2
HOH
HOH
2056
A
HOH
2057
2
HOH
HOH
2057
A
HOH
2058
2
HOH
HOH
2058
A
HOH
2059
2
HOH
HOH
2059
A
HOH
2060
2
HOH
HOH
2060
A
HOH
2061
2
HOH
HOH
2061
A
HOH
2062
2
HOH
HOH
2062
A
HOH
2063
2
HOH
HOH
2063
A
HOH
2064
2
HOH
HOH
2064
A
HOH
2065
2
HOH
HOH
2065
A
HOH
2066
2
HOH
HOH
2066
A
HOH
2067
2
HOH
HOH
2067
A
HOH
2068
2
HOH
HOH
2068
A
HOH
2069
2
HOH
HOH
2069
A
HOH
2070
2
HOH
HOH
2070
A
HOH
2071
2
HOH
HOH
2071
A
HOH
2072
2
HOH
HOH
2072
A
HOH
2073
2
HOH
HOH
2073
A
HOH
2074
2
HOH
HOH
2074
A
HOH
2075
2
HOH
HOH
2075
A
HOH
2076
2
HOH
HOH
2076
A
HOH
2077
2
HOH
HOH
2077
A
HOH
2078
2
HOH
HOH
2078
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
n
11
11
A
n
12
12
A
n
13
13
A
n
14
14
A
n
15
15
A
LYS
16
n
16
LYS
16
A
PRO
17
n
17
PRO
17
A
CYS
18
n
18
CYS
18
A
CYS
19
n
19
CYS
19
A
ASP
20
n
20
ASP
20
A
HIS
21
n
21
HIS
21
A
CYS
22
n
22
CYS
22
A
SER
23
n
23
SER
23
A
CYS
24
n
24
CYS
24
A
THR
25
n
25
THR
25
A
LYS
26
n
26
LYS
26
A
SER
27
n
27
SER
27
A
ILE
28
n
28
ILE
28
A
PRO
29
n
29
PRO
29
A
PRO
30
n
30
PRO
30
A
GLN
31
n
31
GLN
31
A
CYS
32
n
32
CYS
32
A
ARG
33
n
33
ARG
33
A
CYS
34
n
34
CYS
34
A
THR
35
n
35
THR
35
A
ASP
36
n
36
ASP
36
A
LEU
37
n
37
LEU
37
A
ARG
38
n
38
ARG
38
A
LEU
39
n
39
LEU
39
A
ASP
40
n
40
ASP
40
A
SER
41
n
41
SER
41
A
CYS
42
n
42
CYS
42
A
HIS
43
n
43
HIS
43
A
SER
44
n
44
SER
44
A
ALA
45
n
45
ALA
45
A
CYS
46
n
46
CYS
46
A
LYS
47
n
47
LYS
47
A
SER
48
n
48
SER
48
A
CYS
49
n
49
CYS
49
A
ILE
50
n
50
ILE
50
A
CYS
51
n
51
CYS
51
A
THR
52
n
52
THR
52
A
LEU
53
n
53
LEU
53
A
SER
54
n
54
SER
54
A
ILE
55
n
55
ILE
55
A
PRO
56
n
56
PRO
56
A
ALA
57
n
57
ALA
57
A
GLN
58
n
58
GLN
58
A
CYS
59
n
59
CYS
59
A
VAL
60
n
60
VAL
60
A
CYS
61
n
61
CYS
61
A
ASP
62
n
62
ASP
62
A
ASP
63
n
63
ASP
63
A
ILE
64
n
64
ILE
64
A
ASP
65
n
65
ASP
65
A
ASP
66
n
66
ASP
66
A
PHE
67
n
67
PHE
67
A
CYS
68
n
68
CYS
68
A
TYR
69
n
69
TYR
69
A
GLU
70
n
70
GLU
70
A
PRO
71
n
71
PRO
71
A
CYS
72
n
72
CYS
72
A
n
73
73
A
n
74
74
A
n
75
75
A
n
76
76
A
n
77
77
A
n
78
78
A
n
79
79
A
n
80
80
A
n
81
81
A
n
82
82
A
n
83
83
A
0.2302
0.2529
0.2306
0.2534
0.2497
0.2753
555
676
5.0
5.0
1982
author_and_software_defined_assembly
PQS
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
15_555
-x+1/2,y,-z
crystal symmetry operation
54.5785000000
0.0000000000
0.0000000000
A
N
SER
23
A
N
SER
23
A
O
ARG
33
A
O
ARG
33
A
N
ARG
38
A
N
ARG
38
A
O
CYS
59
A
O
CYS
59
A
N
VAL
60
A
N
VAL
60
A
O
ILE
50
A
O
ILE
50
1
A
HOH
2002
B
HOH
1
A
HOH
2015
B
HOH
1
A
SER
1
A
SER
1
1
Y
1
A
GLY
2
A
GLY
2
1
Y
1
A
HIS
3
A
HIS
3
1
Y
1
A
HIS
4
A
HIS
4
1
Y
1
A
GLU
5
A
GLU
5
1
Y
1
A
HIS
6
A
HIS
6
1
Y
1
A
SER
7
A
SER
7
1
Y
1
A
THR
8
A
THR
8
1
Y
1
A
ASP
9
A
ASP
9
1
Y
1
A
GLX
10
A
GLX
10
1
Y
1
A
PRO
11
A
PRO
11
1
Y
1
A
SER
12
A
SER
12
1
Y
1
A
GLX
13
A
GLX
13
1
Y
1
A
SER
14
A
SER
14
1
Y
1
A
SER
15
A
SER
15
1
Y
1
A
LYS
73
A
LYS
73
1
Y
1
A
SER
74
A
SER
74
1
Y
1
A
SER
75
A
SER
75
1
Y
1
A
HIS
76
A
HIS
76
1
Y
1
A
SER
77
A
SER
77
1
Y
1
A
ASP
78
A
ASP
78
1
Y
1
A
ASP
79
A
ASP
79
1
Y
1
A
ASP
80
A
ASP
80
1
Y
1
A
ASN
81
A
ASN
81
1
Y
1
A
ASN
82
A
ASN
82
1
Y
1
A
ASN
83
A
ASN
83
1
Y
1
11.47
1.90
123.30
134.77
A
A
A
OD1
CG
OD2
ASP
ASP
ASP
62
62
62
N
1
-6.76
0.90
118.30
111.54
A
A
A
CB
CG
OD1
ASP
ASP
ASP
62
62
62
N
1
A
ASP
40
73.74
-39.53
THE FIRST 15 AND THE LAST 11 RESIDUES ARE NOT VISIBLE
0.2753
0.2529
0.2534
2.04
10.00
2007
676
13638
1747
5.0
98.7
RANDOM
1
FREE R-VALUE
0.0
OTHER
ENGH AND HUBER
MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228
0
500.83
2.04
10.00
78
502
0
0
424
0.009
0.030
0.0315
0.047
0.063
0.01
0.097
2.040
77.190
1H34
13776
0.05670
1
12.4300
6.330
98.5
0.29750
2.04
2.15
3.580
1
3.08
96.1
data reduction
DENZO
data scaling
SCALEPACK
phasing
SHELXD
phasing
SHELXE
refinement
SHELXL-97
BOWMAN-BIRK TYPE PROTEINASE INHIBITOR
Crystal structure of lima bean trypsin inhibitor
1
N
N
2
N
N
disulf
2.030
A
CYS
18
A
SG
CYS
18
1_555
A
CYS
72
A
SG
CYS
72
1_555
disulf
2.105
A
CYS
19
A
SG
CYS
19
1_555
A
CYS
34
A
SG
CYS
34
1_555
disulf
2.033
A
CYS
22
A
SG
CYS
22
1_555
A
CYS
68
A
SG
CYS
68
1_555
disulf
2.023
A
CYS
24
A
SG
CYS
24
1_555
A
CYS
32
A
SG
CYS
32
1_555
disulf
2.065
A
CYS
42
A
SG
CYS
42
1_555
A
CYS
49
A
SG
CYS
49
1_555
disulf
2.090
A
CYS
46
A
SG
CYS
46
1_555
A
CYS
61
A
SG
CYS
61
1_555
disulf
2.046
A
CYS
51
A
SG
CYS
51
1_555
A
CYS
59
A
SG
CYS
59
1_555
INHIBITOR
INHIBITOR, BOWMAN-BIRK-TYPE PROTEINASE INHIBITOR, SERINE PROTEASE INHIBITOR
A
ILE
28
A
ILE
28
1
A
PRO
29
A
PRO
29
-2.61
A
ILE
55
A
ILE
55
1
A
PRO
56
A
PRO
56
-0.94
IBB_PHALU
UNP
1
P01056
1
83
1H34
1
83
P01056
A
1
1
83
1
ALA
conflict
SER
23
1H34
A
P01056
UNP
23
23
2
3
anti-parallel
anti-parallel
anti-parallel
A
CYS
22
A
CYS
22
A
CYS
24
A
CYS
24
A
CYS
32
A
CYS
32
A
CYS
34
A
CYS
34
A
LEU
37
A
LEU
37
A
LEU
39
A
LEU
39
A
GLN
58
A
GLN
58
A
CYS
61
A
CYS
61
A
CYS
49
A
CYS
49
A
CYS
51
A
CYS
51
199
I 21 3