0.009161 0.000000 0.000000 0.000000 0.009161 0.000000 0.000000 0.000000 0.009161 0.00000 0.00000 0.00000 Debreczeni, J.E. Bunkoczi, G. Girmann, B. Sheldrick, G.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 24 90.00 90.00 90.00 109.157 109.157 109.157 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C5 H8 N O2 X2 114.123 y GLU/GLN AMBIGUOUS L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 59 393 10.1107/S0907444902020917 12554963 In-House Phase Determination of the Lima Bean Trypsin Inhibitor: A Low-Resolution Sulfur-Sad Case 2003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 IMAGE PLATE 2002-04-15 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 0.8431 1.0 BW7B EMBL/DESY, HAMBURG 0.8431 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B 9043.960 BOWMAN-BIRK TYPE PROTEINASE INHIBITOR 1 nat polymer 18.015 water 78 nat water no no SGHHEHSTDZPSZSSKPCCDHCSCTKSIPPQCRCTDLRLDSCHSACKSCICTLSIPAQCVCDDIDDFCYEPCKSSHSDDD NNN SGHHEHSTDZPSZSSKPCCDHCSCTKSIPPQCRCTDLRLDSCHSACKSCICTLSIPAQCVCDDIDDFCYEPCKSSHSDDD NNN A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n LIMA BEAN sample 3884 SEED PHASEOLUS LUNATUS 1 6.02 79.5 PHASED USING IN-HOUSE SULFUR-SAD DATA 7.50 0.6 M K,NA-TARTRATE, 0.1 M HEPES PH 7.5 pdbx_database_proc pdbx_database_status refine diffrn_source repository Initial release Version format compliance Version format compliance Data collection Other Refinement description Data collection 1 0 2003-02-06 1 1 2011-05-08 1 2 2011-07-13 1 3 2019-05-22 1 4 2019-07-24 _pdbx_database_status.recvd_author_approval _refine.pdbx_ls_cross_valid_method _diffrn_source.pdbx_synchrotron_site PDBE Y PDBE 2002-08-21 REL HOH water BELONGS TO THE BOWMAN-BIRK SERINE PROTEASE INHIBITOR FAMILY. HOH 2001 2 HOH HOH 2001 A HOH 2002 2 HOH HOH 2002 A HOH 2003 2 HOH HOH 2003 A HOH 2004 2 HOH HOH 2004 A HOH 2005 2 HOH HOH 2005 A HOH 2006 2 HOH HOH 2006 A HOH 2007 2 HOH HOH 2007 A HOH 2008 2 HOH HOH 2008 A HOH 2009 2 HOH HOH 2009 A HOH 2010 2 HOH HOH 2010 A HOH 2011 2 HOH HOH 2011 A HOH 2012 2 HOH HOH 2012 A HOH 2013 2 HOH HOH 2013 A HOH 2014 2 HOH HOH 2014 A HOH 2015 2 HOH HOH 2015 A HOH 2016 2 HOH HOH 2016 A HOH 2017 2 HOH HOH 2017 A HOH 2018 2 HOH HOH 2018 A HOH 2019 2 HOH HOH 2019 A HOH 2020 2 HOH HOH 2020 A HOH 2021 2 HOH HOH 2021 A HOH 2022 2 HOH HOH 2022 A HOH 2023 2 HOH HOH 2023 A HOH 2024 2 HOH HOH 2024 A HOH 2025 2 HOH HOH 2025 A HOH 2026 2 HOH HOH 2026 A HOH 2027 2 HOH HOH 2027 A HOH 2028 2 HOH HOH 2028 A HOH 2029 2 HOH HOH 2029 A HOH 2030 2 HOH HOH 2030 A HOH 2031 2 HOH HOH 2031 A HOH 2032 2 HOH HOH 2032 A HOH 2033 2 HOH HOH 2033 A HOH 2034 2 HOH HOH 2034 A HOH 2035 2 HOH HOH 2035 A HOH 2036 2 HOH HOH 2036 A HOH 2037 2 HOH HOH 2037 A HOH 2038 2 HOH HOH 2038 A HOH 2039 2 HOH HOH 2039 A HOH 2040 2 HOH HOH 2040 A HOH 2041 2 HOH HOH 2041 A HOH 2042 2 HOH HOH 2042 A HOH 2043 2 HOH HOH 2043 A HOH 2044 2 HOH HOH 2044 A HOH 2045 2 HOH HOH 2045 A HOH 2046 2 HOH HOH 2046 A HOH 2047 2 HOH HOH 2047 A HOH 2048 2 HOH HOH 2048 A HOH 2049 2 HOH HOH 2049 A HOH 2050 2 HOH HOH 2050 A HOH 2051 2 HOH HOH 2051 A HOH 2052 2 HOH HOH 2052 A HOH 2053 2 HOH HOH 2053 A HOH 2054 2 HOH HOH 2054 A HOH 2055 2 HOH HOH 2055 A HOH 2056 2 HOH HOH 2056 A HOH 2057 2 HOH HOH 2057 A HOH 2058 2 HOH HOH 2058 A HOH 2059 2 HOH HOH 2059 A HOH 2060 2 HOH HOH 2060 A HOH 2061 2 HOH HOH 2061 A HOH 2062 2 HOH HOH 2062 A HOH 2063 2 HOH HOH 2063 A HOH 2064 2 HOH HOH 2064 A HOH 2065 2 HOH HOH 2065 A HOH 2066 2 HOH HOH 2066 A HOH 2067 2 HOH HOH 2067 A HOH 2068 2 HOH HOH 2068 A HOH 2069 2 HOH HOH 2069 A HOH 2070 2 HOH HOH 2070 A HOH 2071 2 HOH HOH 2071 A HOH 2072 2 HOH HOH 2072 A HOH 2073 2 HOH HOH 2073 A HOH 2074 2 HOH HOH 2074 A HOH 2075 2 HOH HOH 2075 A HOH 2076 2 HOH HOH 2076 A HOH 2077 2 HOH HOH 2077 A HOH 2078 2 HOH HOH 2078 A n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A n 7 7 A n 8 8 A n 9 9 A n 10 10 A n 11 11 A n 12 12 A n 13 13 A n 14 14 A n 15 15 A LYS 16 n 16 LYS 16 A PRO 17 n 17 PRO 17 A CYS 18 n 18 CYS 18 A CYS 19 n 19 CYS 19 A ASP 20 n 20 ASP 20 A HIS 21 n 21 HIS 21 A CYS 22 n 22 CYS 22 A SER 23 n 23 SER 23 A CYS 24 n 24 CYS 24 A THR 25 n 25 THR 25 A LYS 26 n 26 LYS 26 A SER 27 n 27 SER 27 A ILE 28 n 28 ILE 28 A PRO 29 n 29 PRO 29 A PRO 30 n 30 PRO 30 A GLN 31 n 31 GLN 31 A CYS 32 n 32 CYS 32 A ARG 33 n 33 ARG 33 A CYS 34 n 34 CYS 34 A THR 35 n 35 THR 35 A ASP 36 n 36 ASP 36 A LEU 37 n 37 LEU 37 A ARG 38 n 38 ARG 38 A LEU 39 n 39 LEU 39 A ASP 40 n 40 ASP 40 A SER 41 n 41 SER 41 A CYS 42 n 42 CYS 42 A HIS 43 n 43 HIS 43 A SER 44 n 44 SER 44 A ALA 45 n 45 ALA 45 A CYS 46 n 46 CYS 46 A LYS 47 n 47 LYS 47 A SER 48 n 48 SER 48 A CYS 49 n 49 CYS 49 A ILE 50 n 50 ILE 50 A CYS 51 n 51 CYS 51 A THR 52 n 52 THR 52 A LEU 53 n 53 LEU 53 A SER 54 n 54 SER 54 A ILE 55 n 55 ILE 55 A PRO 56 n 56 PRO 56 A ALA 57 n 57 ALA 57 A GLN 58 n 58 GLN 58 A CYS 59 n 59 CYS 59 A VAL 60 n 60 VAL 60 A CYS 61 n 61 CYS 61 A ASP 62 n 62 ASP 62 A ASP 63 n 63 ASP 63 A ILE 64 n 64 ILE 64 A ASP 65 n 65 ASP 65 A ASP 66 n 66 ASP 66 A PHE 67 n 67 PHE 67 A CYS 68 n 68 CYS 68 A TYR 69 n 69 TYR 69 A GLU 70 n 70 GLU 70 A PRO 71 n 71 PRO 71 A CYS 72 n 72 CYS 72 A n 73 73 A n 74 74 A n 75 75 A n 76 76 A n 77 77 A n 78 78 A n 79 79 A n 80 80 A n 81 81 A n 82 82 A n 83 83 A 0.2302 0.2529 0.2306 0.2534 0.2497 0.2753 555 676 5.0 5.0 1982 author_and_software_defined_assembly PQS 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 15_555 -x+1/2,y,-z crystal symmetry operation 54.5785000000 0.0000000000 0.0000000000 A N SER 23 A N SER 23 A O ARG 33 A O ARG 33 A N ARG 38 A N ARG 38 A O CYS 59 A O CYS 59 A N VAL 60 A N VAL 60 A O ILE 50 A O ILE 50 1 A HOH 2002 B HOH 1 A HOH 2015 B HOH 1 A SER 1 A SER 1 1 Y 1 A GLY 2 A GLY 2 1 Y 1 A HIS 3 A HIS 3 1 Y 1 A HIS 4 A HIS 4 1 Y 1 A GLU 5 A GLU 5 1 Y 1 A HIS 6 A HIS 6 1 Y 1 A SER 7 A SER 7 1 Y 1 A THR 8 A THR 8 1 Y 1 A ASP 9 A ASP 9 1 Y 1 A GLX 10 A GLX 10 1 Y 1 A PRO 11 A PRO 11 1 Y 1 A SER 12 A SER 12 1 Y 1 A GLX 13 A GLX 13 1 Y 1 A SER 14 A SER 14 1 Y 1 A SER 15 A SER 15 1 Y 1 A LYS 73 A LYS 73 1 Y 1 A SER 74 A SER 74 1 Y 1 A SER 75 A SER 75 1 Y 1 A HIS 76 A HIS 76 1 Y 1 A SER 77 A SER 77 1 Y 1 A ASP 78 A ASP 78 1 Y 1 A ASP 79 A ASP 79 1 Y 1 A ASP 80 A ASP 80 1 Y 1 A ASN 81 A ASN 81 1 Y 1 A ASN 82 A ASN 82 1 Y 1 A ASN 83 A ASN 83 1 Y 1 11.47 1.90 123.30 134.77 A A A OD1 CG OD2 ASP ASP ASP 62 62 62 N 1 -6.76 0.90 118.30 111.54 A A A CB CG OD1 ASP ASP ASP 62 62 62 N 1 A ASP 40 73.74 -39.53 THE FIRST 15 AND THE LAST 11 RESIDUES ARE NOT VISIBLE 0.2753 0.2529 0.2534 2.04 10.00 2007 676 13638 1747 5.0 98.7 RANDOM 1 FREE R-VALUE 0.0 OTHER ENGH AND HUBER MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228 0 500.83 2.04 10.00 78 502 0 0 424 0.009 0.030 0.0315 0.047 0.063 0.01 0.097 2.040 77.190 1H34 13776 0.05670 1 12.4300 6.330 98.5 0.29750 2.04 2.15 3.580 1 3.08 96.1 data reduction DENZO data scaling SCALEPACK phasing SHELXD phasing SHELXE refinement SHELXL-97 BOWMAN-BIRK TYPE PROTEINASE INHIBITOR Crystal structure of lima bean trypsin inhibitor 1 N N 2 N N disulf 2.030 A CYS 18 A SG CYS 18 1_555 A CYS 72 A SG CYS 72 1_555 disulf 2.105 A CYS 19 A SG CYS 19 1_555 A CYS 34 A SG CYS 34 1_555 disulf 2.033 A CYS 22 A SG CYS 22 1_555 A CYS 68 A SG CYS 68 1_555 disulf 2.023 A CYS 24 A SG CYS 24 1_555 A CYS 32 A SG CYS 32 1_555 disulf 2.065 A CYS 42 A SG CYS 42 1_555 A CYS 49 A SG CYS 49 1_555 disulf 2.090 A CYS 46 A SG CYS 46 1_555 A CYS 61 A SG CYS 61 1_555 disulf 2.046 A CYS 51 A SG CYS 51 1_555 A CYS 59 A SG CYS 59 1_555 INHIBITOR INHIBITOR, BOWMAN-BIRK-TYPE PROTEINASE INHIBITOR, SERINE PROTEASE INHIBITOR A ILE 28 A ILE 28 1 A PRO 29 A PRO 29 -2.61 A ILE 55 A ILE 55 1 A PRO 56 A PRO 56 -0.94 IBB_PHALU UNP 1 P01056 1 83 1H34 1 83 P01056 A 1 1 83 1 ALA conflict SER 23 1H34 A P01056 UNP 23 23 2 3 anti-parallel anti-parallel anti-parallel A CYS 22 A CYS 22 A CYS 24 A CYS 24 A CYS 32 A CYS 32 A CYS 34 A CYS 34 A LEU 37 A LEU 37 A LEU 39 A LEU 39 A GLN 58 A GLN 58 A CYS 61 A CYS 61 A CYS 49 A CYS 49 A CYS 51 A CYS 51 199 I 21 3