0.007721 0.004457 0.000000 0.000000 0.008915 0.000000 0.000000 0.000000 0.009137 0.00000 0.00000 0.00000 Cusack, S. Yaremchuk, A. Kriklivyi, I. Tukalo, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 129.525 129.525 109.451 C11 H16 N5 O7 P 361.248 n 6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE RNA linking C10 H15 N2 O9 P 338.208 n 5-METHYLURIDINE 5'-MONOPHOSPHATE RNA linking C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C10 H16 N5 O13 P3 507.181 ADENOSINE-5'-TRIPHOSPHATE non-polymer C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C9 H13 N2 O9 P 324.181 n PSEUDOURIDINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H13 N O2 167.205 n 4-[(2S)-2-amino-3-hydroxypropyl]phenol tyrosinol, bound form of TYROSINAL L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Embo J. EMJODG 0897 0261-4189 21 3829 10.1093/EMBOJ/CDF373 12110594 Class I Tyrosyl-tRNA Synthetase Has a Class II Mode or tRNA Recognition 2002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 CCD 2001-02-15 ADSC CCD SINGLE WAVELENGTH M x-ray 1 0.9393 1.0 ID14-4 ESRF 0.9393 SYNCHROTRON ESRF BEAMLINE ID14-4 48786.203 TYROSYL-TRNA SYNTHETASE 6.1.1.1 1 man polymer 27709.508 WILD-TYPE TRNATYR(GUA) 1 syn polymer 507.181 ADENOSINE-5'-TRIPHOSPHATE 1 syn non-polymer 167.205 4-[(2S)-2-amino-3-hydroxypropyl]phenol 1 syn non-polymer 18.015 water 13 nat water TYROSINE--TRNA LIGASE no no MAGTGHTPEEALALLKRGAEEIVPEEELLAKLKEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQELGHKVVLIIGDFT GMIGDPSGRSKTRPPLTLEETRENAKTYVAQAGKILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKK RYEAGIPISLHELLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDNY IGLTEPPEAMFKKLMRVPDPLLPSYFRLLTDLEEEEIEALLKAGPVPAHRVLARLLTAAYALPQIPPRIDRAFYESLGYA WEAFGRDKEAGPEEVRRAEARYDEVAKGGIPEEIPEVTIPASELKEGRIWVARLFTLAGLTPSNAEARRLIQNRGLRLDG EVLTDPMLQVDLSRPRILQRGKDRFVRVRLSD MAGTGHTPEEALALLKRGAEEIVPEEELLAKLKEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQELGHKVVLIIGDFT GMIGDPSGRSKTRPPLTLEETRENAKTYVAQAGKILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKK RYEAGIPISLHELLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDNY IGLTEPPEAMFKKLMRVPDPLLPSYFRLLTDLEEEEIEALLKAGPVPAHRVLARLLTAAYALPQIPPRIDRAFYESLGYA WEAFGRDKEAGPEEVRRAEARYDEVAKGGIPEEIPEVTIPASELKEGRIWVARLFTLAGLTPSNAEARRLIQNRGLRLDG EVLTDPMLQVDLSRPRILQRGKDRFVRVRLSD A polypeptide(L) no yes GGGCAGGUUCCCGAGCGGCCAAAGGGGACGGUCUG(PSU)AAAACCGUUGGCGUAUGCCUUCGCUGG(5MU)(PSU)CG (1MA)AUCCAGCCCUGCCCACCA GGGCAGGUUCCCGAGCGGCCAAAGGGGACGGUCUGUAAAACCGUUGGCGUAUGCCUUCGCUGGUUCGAAUCCAGCCCUGC CCACCA B polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n HB27 sample 262724 THERMUS THERMOPHILUS 469008 ESCHERICHIA COLI BL21(DE3) PET29B PLASMID 1 3.63 65.8 7.00 DROP: 5MG/ML TYRRSTT+TRNA(TYR)WITH 5MM TYROSINOL, 10MM MGCL2, 10MM ATP, 50MM HEPES (PH7.0), 0.8M AMMONIUM SULPHATE. RESERVOIR: 1.5-1.6M AMMONIUM SULPHATE, 100MM HEPES (PH7.0)., pH 7.00 7.527 1 19 B 1 B 72 -0.348 B_G1:C72_B 1 -18.701 -0.057 0.015 -0.111 -17.846 1 19 B 2 B 71 3.089 B_G2:C71_B 2 -10.788 -0.037 -0.557 -0.041 -7.821 1 19 B 3 B 70 -0.644 B_G3:C70_B 3 -8.935 -0.050 -0.145 -0.198 -0.100 1 19 B 4 B 69 0.439 B_C4:G69_B 4 -14.580 0.153 -0.495 -0.190 3.462 1 20 B 5 B 68 -2.846 B_A5:U68_B 5 -12.257 -0.004 0.341 -0.080 1.426 1 19 B 6 B 67 -1.150 B_G6:C67_B 6 -8.905 -0.405 0.313 -0.254 -9.102 1 19 B 7 B 66 -2.681 B_G7:C66_B 7 -2.162 0.066 -0.318 -0.091 -8.310 1 19 B 49 B 65 1.553 B_G49:C65_B 8 -9.731 -0.315 -0.060 0.057 -4.958 1 19 B 50 B 64 3.990 B_C50:G64_B 9 -10.337 0.306 0.282 -0.032 3.766 1 20 B 51 B 63 5.668 B_U51:A63_B 10 -12.253 0.025 -0.005 -0.090 -4.650 1 19 B 52 B 62 1.850 B_G52:C62_B 11 -7.100 -0.136 -0.276 -0.132 -17.617 1 19 B 53 B 61 4.664 B_G53:C61_B 12 -15.781 -0.014 -0.260 -0.061 -10.407 4 24 B 54 B 58 -108.616 B_5MU54:1MA58_B 13 11.003 4.421 -0.172 -2.145 10.896 2 B 55 B 18 -127.327 B_PSU55:G18_B 14 -1.168 0.168 0.138 -5.692 5.594 1 19 E B 47 B 47 8.966 B_G47E:C47_B 15 26.655 -0.375 0.692 -0.114 5.188 1 19 F B 47 B 46 0.397 B_C47F:G46_B 16 8.911 0.058 -0.087 0.007 27.671 1 19 G B 47 B 45 2.871 B_C47G:G45_B 17 -13.831 0.087 -0.737 0.042 -8.849 4 24 H B 47 B B 20 -85.237 B_U47H:A20B_B 18 9.796 3.343 1.044 -1.635 -23.256 I B 47 B 21 -37.116 B_U47I:A21_B 19 -48.084 5.294 0.452 -3.297 3.048 2 22 B 48 B 15 -149.201 B_C48:G15_B 20 -17.597 -0.071 -0.368 -4.022 -25.352 1 19 B 19 B 56 -4.018 B_G19:C56_B 21 -16.775 -0.018 -0.310 -0.026 -12.260 4 24 B 8 B 14 -91.423 B_U8:A14_B 22 13.727 4.235 0.938 -2.494 -3.144 5 11 B 22 B 13 2.685 B_A22:G13_B 23 -1.214 -6.827 -0.612 -3.805 -1.900 1 19 B 23 B 12 0.455 B_G23:C12_B 24 -2.177 -0.388 0.046 -0.141 -6.608 1 19 B 24 B 11 0.876 B_G24:C11_B 25 5.115 -0.128 -0.298 -0.187 -11.262 1 19 B 25 B 10 -1.304 B_G25:C10_B 26 -10.603 -0.195 -0.480 -0.258 1.782 1 28 B 26 B 44 -1.664 B_G26:U44_B 27 -12.063 -2.709 0.042 -0.875 16.302 1 20 B 27 B 43 3.545 B_A27:U43_B 28 -19.432 0.013 0.600 -0.261 9.114 1 19 B 28 B 42 4.413 B_C28:G42_B 29 -17.861 0.403 -0.075 -0.127 6.643 1 19 B 29 B 41 3.590 B_G29:C41_B 30 -0.673 -0.220 0.498 -0.101 -27.932 1 19 B 30 B 40 10.788 B_G30:C40_B 31 -24.969 -0.367 -1.298 -0.148 -10.646 1 20 B 31 B 39 2.252 B_U31:A39_B 32 -11.082 0.009 -0.003 -0.158 -12.914 B 32 B 37 -45.495 B_C32:A37_B 33 22.684 5.897 -0.341 -1.623 2.522 27.237 B B 1 2 24.131 B B 72 71 3.780 11.045 -0.911 -2.284 BB_G1G2:C71C72_BB 1 0.926 -2.023 24.919 -7.638 2.168 2.521 35.710 B B 2 3 12.349 B B 71 70 2.853 7.505 -0.528 -1.527 BB_G2G3:C70C71_BB 2 -3.853 6.340 34.730 -3.395 0.396 2.872 32.438 B B 3 4 6.193 B B 70 69 3.034 3.433 0.204 -1.257 BB_G3C4:G69C70_BB 3 6.273 -11.317 31.661 -2.802 0.643 2.656 37.714 B B 4 5 14.207 B B 69 68 3.069 9.099 0.517 -1.390 BB_C4A5:U68G69_BB 4 -0.297 0.463 36.637 -3.197 -0.834 1.963 28.764 B B 5 6 22.025 B B 68 67 2.939 10.658 0.921 -2.383 BB_A5G6:C67U68_BB 5 3.801 -7.856 26.489 -6.665 -1.187 2.074 37.430 B B 6 7 29.300 B B 67 66 3.431 18.027 -0.072 -1.974 BB_G6G7:C66C67_BB 6 4.283 -6.961 32.666 -5.217 0.621 2.992 32.330 B B 7 49 4.598 B B 66 65 3.178 2.558 -0.014 -2.293 BB_G7G49:C65C66_BB 7 -0.741 1.332 32.223 -4.546 -0.099 3.341 36.256 B B 49 50 -4.096 B B 65 64 3.186 -2.546 -0.718 -1.889 BB_G49C50:G64C65_BB 8 -2.000 3.218 36.116 -2.679 0.873 2.724 32.416 B B 50 51 13.670 B B 64 63 3.032 7.544 0.298 -1.064 BB_C50U51:A63G64_BB 9 4.162 -7.542 31.279 -3.096 0.122 2.628 28.522 B B 51 52 20.967 B B 63 62 3.389 10.107 0.415 -1.633 BB_U51G52:C62A63_BB 10 1.835 -3.807 26.644 -5.510 -0.443 3.409 35.261 B B 52 53 9.376 B B 62 61 3.606 5.636 0.833 -1.524 BB_G52G53:C61C62_BB 11 5.330 -8.868 34.423 -3.423 -0.516 3.101 91.649 B B 53 54 0.817 B B 61 58 3.229 1.172 -3.209 -2.076 BB_G535MU54:1MA58C61_BB 12 3.890 -2.713 91.579 -1.469 2.310 3.324 33.640 B B 54 55 -0.073 B B 58 18 3.122 -0.042 1.188 -0.254 BB_5MU54PSU55:G181MA58_BB 13 9.057 -15.834 32.432 -0.432 -0.567 2.387 30.994 E F B B 47 47 18.425 B B 47 46 3.371 9.613 -0.574 -2.056 BB_G47EC47F:G46C47_BB 14 6.674 -12.793 28.750 -5.543 2.251 2.625 29.392 F G B B 47 47 2.285 B B 46 45 2.690 1.159 0.004 -1.528 BB_C47FC47G:G45G46_BB 15 1.686 -3.326 29.322 -3.215 0.287 4.192 76.130 G H B B 47 47 17.077 B B B 45 20 4.461 20.815 -3.484 -2.200 BB_C47GU47H:A20BG45_BB 16 -10.286 8.439 73.020 -2.624 2.411 1.668 26.089 H I B B 47 47 34.474 B B B 20 21 3.719 14.621 -2.262 -1.906 BB_U47HU47I:A21A20B_BB 17 3.809 -8.980 21.331 -7.855 5.957 1.751 49.640 I B B 47 48 13.991 B B 21 15 2.645 11.565 -4.286 0.500 BB_U47IC48:G15A21_BB 18 10.824 -13.094 47.198 0.007 5.656 2.565 48.597 B B 8 22 -4.975 B B 14 13 2.720 -4.054 1.053 -2.118 BB_U8A22:G13A14_BB 19 -11.786 14.464 47.065 -2.317 -2.024 3.302 60.583 B B 22 23 -0.087 B B 13 12 3.215 -0.088 -0.950 -0.990 BB_A22G23:C12G13_BB 20 -7.371 7.321 60.175 -0.977 0.584 3.306 32.395 B B 23 24 3.434 B B 12 11 3.371 1.912 -0.496 -1.573 BB_G23G24:C11C12_BB 21 -3.023 5.429 32.202 -3.164 0.343 2.946 35.327 B B 24 25 12.254 B B 11 10 3.380 7.379 0.239 -1.837 BB_G24G25:C10C11_BB 22 2.389 -3.966 34.491 -4.096 -0.048 2.703 48.456 B B 25 26 3.815 B B 10 44 3.084 3.121 2.900 0.134 BB_G25G26:U44C10_BB 23 -6.382 7.800 47.963 -0.052 -3.972 2.723 41.190 B B 26 27 3.536 B B 44 43 2.862 2.477 0.387 -0.743 BB_G26A27:U43U44_BB 24 -6.492 9.268 40.625 -1.286 -1.154 3.013 37.906 B B 27 28 8.973 B B 43 42 3.286 5.790 0.108 -1.508 BB_A27C28:G42U43_BB 25 5.204 -8.064 37.127 -3.042 0.483 2.100 31.690 B B 28 29 20.886 B B 42 41 2.997 11.077 -0.270 -2.038 BB_C28G29:C41G42_BB 26 -7.090 13.369 28.896 -5.400 -0.573 2.975 38.517 B B 29 30 26.698 B B 41 40 4.217 16.454 0.738 -1.744 BB_G29G30:C40C41_BB 27 16.793 -27.247 30.727 -5.164 1.453 2.479 33.998 B B 30 31 14.816 B B 40 39 2.786 8.450 -0.495 -1.011 BB_G30U31:A39C40_BB 28 -10.063 17.645 31.425 -2.861 -0.502 4.752 76.279 B B 31 32 13.326 B B 39 37 5.261 16.343 -0.304 -2.317 BB_U31C32:A37A39_BB 29 -8.392 6.843 74.363 -2.626 -0.140 chem_comp pdbx_database_status struct_conn repository Initial release Source and taxonomy Version format compliance Atomic model Derived calculations Non-polymer description Other Structure summary Data collection Structure summary Data collection Derived calculations Other 1 0 2002-10-27 1 1 2014-02-05 1 2 2015-08-19 1 3 2018-10-17 1 4 2019-10-30 _chem_comp.mon_nstd_flag _chem_comp.pdbx_synonyms _chem_comp.type _pdbx_database_status.status_code_sf TYROSYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH TYROSINOL PDBE Y PDBE 2002-08-28 REL REL ATP ADENOSINE-5'-TRIPHOSPHATE TYE 4-[(2S)-2-amino-3-hydroxypropyl]phenol HOH water 274 THERMUS THERMOPHILUS sample CATALYTIC ACTIVITY: ATP + L-TYROSINE + TRNA(TYR) = AMP + DIPHOSPHATE + L-TYROSYL-TRNA(TYR). ALTHOUGH THIS PROTEIN IS A CLASS I AMINOACYL-TRNA SYNTHETASE, IT DISPLAYS A CLASS II MODE OF TRNA RECOGNITION. ATP 1433 3 ATP ATP 1433 A TYE 1434 4 TYE TYE 1434 A HOH 2001 5 HOH HOH 2001 A HOH 2002 5 HOH HOH 2002 A HOH 2003 5 HOH HOH 2003 A HOH 2004 5 HOH HOH 2004 A HOH 2005 5 HOH HOH 2005 A HOH 2006 5 HOH HOH 2006 A HOH 2007 5 HOH HOH 2007 A HOH 2008 5 HOH HOH 2008 A HOH 2001 5 HOH HOH 2001 B HOH 2002 5 HOH HOH 2002 B HOH 2003 5 HOH HOH 2003 B HOH 2004 5 HOH HOH 2004 B HOH 2005 5 HOH HOH 2005 B n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A HIS 6 n 6 HIS 6 A THR 7 n 7 THR 7 A PRO 8 n 8 PRO 8 A GLU 9 n 9 GLU 9 A GLU 10 n 10 GLU 10 A ALA 11 n 11 ALA 11 A LEU 12 n 12 LEU 12 A ALA 13 n 13 ALA 13 A LEU 14 n 14 LEU 14 A LEU 15 n 15 LEU 15 A LYS 16 n 16 LYS 16 A ARG 17 n 17 ARG 17 A GLY 18 n 18 GLY 18 A ALA 19 n 19 ALA 19 A GLU 20 n 20 GLU 20 A GLU 21 n 21 GLU 21 A ILE 22 n 22 ILE 22 A VAL 23 n 23 VAL 23 A PRO 24 n 24 PRO 24 A GLU 25 n 25 GLU 25 A GLU 26 n 26 GLU 26 A GLU 27 n 27 GLU 27 A LEU 28 n 28 LEU 28 A LEU 29 n 29 LEU 29 A ALA 30 n 30 ALA 30 A LYS 31 n 31 LYS 31 A LEU 32 n 32 LEU 32 A LYS 33 n 33 LYS 33 A GLU 34 n 34 GLU 34 A GLY 35 n 35 GLY 35 A ARG 36 n 36 ARG 36 A PRO 37 n 37 PRO 37 A LEU 38 n 38 LEU 38 A THR 39 n 39 THR 39 A VAL 40 n 40 VAL 40 A LYS 41 n 41 LYS 41 A LEU 42 n 42 LEU 42 A GLY 43 n 43 GLY 43 A ALA 44 n 44 ALA 44 A ASP 45 n 45 ASP 45 A PRO 46 n 46 PRO 46 A THR 47 n 47 THR 47 A ARG 48 n 48 ARG 48 A PRO 49 n 49 PRO 49 A ASP 50 n 50 ASP 50 A LEU 51 n 51 LEU 51 A HIS 52 n 52 HIS 52 A LEU 53 n 53 LEU 53 A GLY 54 n 54 GLY 54 A HIS 55 n 55 HIS 55 A ALA 56 n 56 ALA 56 A VAL 57 n 57 VAL 57 A VAL 58 n 58 VAL 58 A LEU 59 n 59 LEU 59 A ARG 60 n 60 ARG 60 A LYS 61 n 61 LYS 61 A MET 62 n 62 MET 62 A ARG 63 n 63 ARG 63 A GLN 64 n 64 GLN 64 A PHE 65 n 65 PHE 65 A GLN 66 n 66 GLN 66 A GLU 67 n 67 GLU 67 A LEU 68 n 68 LEU 68 A GLY 69 n 69 GLY 69 A HIS 70 n 70 HIS 70 A LYS 71 n 71 LYS 71 A VAL 72 n 72 VAL 72 A VAL 73 n 73 VAL 73 A LEU 74 n 74 LEU 74 A ILE 75 n 75 ILE 75 A ILE 76 n 76 ILE 76 A GLY 77 n 77 GLY 77 A ASP 78 n 78 ASP 78 A PHE 79 n 79 PHE 79 A THR 80 n 80 THR 80 A GLY 81 n 81 GLY 81 A MET 82 n 82 MET 82 A ILE 83 n 83 ILE 83 A GLY 84 n 84 GLY 84 A ASP 85 n 85 ASP 85 A PRO 86 n 86 PRO 86 A SER 87 n 87 SER 87 A GLY 88 n 88 GLY 88 A ARG 89 n 89 ARG 89 A SER 90 n 90 SER 90 A LYS 91 n 91 LYS 91 A THR 92 n 92 THR 92 A ARG 93 n 93 ARG 93 A PRO 94 n 94 PRO 94 A PRO 95 n 95 PRO 95 A LEU 96 n 96 LEU 96 A THR 97 n 97 THR 97 A LEU 98 n 98 LEU 98 A GLU 99 n 99 GLU 99 A GLU 100 n 100 GLU 100 A THR 101 n 101 THR 101 A ARG 102 n 102 ARG 102 A GLU 103 n 103 GLU 103 A ASN 104 n 104 ASN 104 A ALA 105 n 105 ALA 105 A LYS 106 n 106 LYS 106 A THR 107 n 107 THR 107 A TYR 108 n 108 TYR 108 A VAL 109 n 109 VAL 109 A ALA 110 n 110 ALA 110 A GLN 111 n 111 GLN 111 A ALA 112 n 112 ALA 112 A GLY 113 n 113 GLY 113 A LYS 114 n 114 LYS 114 A ILE 115 n 115 ILE 115 A LEU 116 n 116 LEU 116 A ARG 117 n 117 ARG 117 A GLN 118 n 118 GLN 118 A GLU 119 n 119 GLU 119 A PRO 120 n 120 PRO 120 A HIS 121 n 121 HIS 121 A LEU 122 n 122 LEU 122 A PHE 123 n 123 PHE 123 A GLU 124 n 124 GLU 124 A LEU 125 n 125 LEU 125 A ARG 126 n 126 ARG 126 A TYR 127 n 127 TYR 127 A ASN 128 n 128 ASN 128 A SER 129 n 129 SER 129 A GLU 130 n 130 GLU 130 A TRP 131 n 131 TRP 131 A LEU 132 n 132 LEU 132 A GLU 133 n 133 GLU 133 A GLY 134 n 134 GLY 134 A LEU 135 n 135 LEU 135 A THR 136 n 136 THR 136 A PHE 137 n 137 PHE 137 A LYS 138 n 138 LYS 138 A GLU 139 n 139 GLU 139 A VAL 140 n 140 VAL 140 A VAL 141 n 141 VAL 141 A ARG 142 n 142 ARG 142 A LEU 143 n 143 LEU 143 A THR 144 n 144 THR 144 A SER 145 n 145 SER 145 A LEU 146 n 146 LEU 146 A MET 147 n 147 MET 147 A THR 148 n 148 THR 148 A VAL 149 n 149 VAL 149 A ALA 150 n 150 ALA 150 A GLN 151 n 151 GLN 151 A MET 152 n 152 MET 152 A LEU 153 n 153 LEU 153 A GLU 154 n 154 GLU 154 A ARG 155 n 155 ARG 155 A GLU 156 n 156 GLU 156 A ASP 157 n 157 ASP 157 A PHE 158 n 158 PHE 158 A LYS 159 n 159 LYS 159 A LYS 160 n 160 LYS 160 A ARG 161 n 161 ARG 161 A TYR 162 n 162 TYR 162 A GLU 163 n 163 GLU 163 A ALA 164 n 164 ALA 164 A GLY 165 n 165 GLY 165 A ILE 166 n 166 ILE 166 A PRO 167 n 167 PRO 167 A ILE 168 n 168 ILE 168 A SER 169 n 169 SER 169 A LEU 170 n 170 LEU 170 A HIS 171 n 171 HIS 171 A GLU 172 n 172 GLU 172 A LEU 173 n 173 LEU 173 A LEU 174 n 174 LEU 174 A TYR 175 n 175 TYR 175 A PRO 176 n 176 PRO 176 A PHE 177 n 177 PHE 177 A ALA 178 n 178 ALA 178 A GLN 179 n 179 GLN 179 A ALA 180 n 180 ALA 180 A TYR 181 n 181 TYR 181 A ASP 182 n 182 ASP 182 A SER 183 n 183 SER 183 A VAL 184 n 184 VAL 184 A ALA 185 n 185 ALA 185 A ILE 186 n 186 ILE 186 A ARG 187 n 187 ARG 187 A ALA 188 n 188 ALA 188 A ASP 189 n 189 ASP 189 A VAL 190 n 190 VAL 190 A GLU 191 n 191 GLU 191 A MET 192 n 192 MET 192 A GLY 193 n 193 GLY 193 A GLY 194 n 194 GLY 194 A THR 195 n 195 THR 195 A ASP 196 n 196 ASP 196 A GLN 197 n 197 GLN 197 A ARG 198 n 198 ARG 198 A PHE 199 n 199 PHE 199 A ASN 200 n 200 ASN 200 A LEU 201 n 201 LEU 201 A LEU 202 n 202 LEU 202 A VAL 203 n 203 VAL 203 A GLY 204 n 204 GLY 204 A ARG 205 n 205 ARG 205 A GLU 206 n 206 GLU 206 A VAL 207 n 207 VAL 207 A GLN 208 n 208 GLN 208 A ARG 209 n 209 ARG 209 A ALA 210 n 210 ALA 210 A TYR 211 n 211 TYR 211 A GLY 212 n 212 GLY 212 A GLN 213 n 213 GLN 213 A SER 214 n 214 SER 214 A PRO 215 n 215 PRO 215 A GLN 216 n 216 GLN 216 A VAL 217 n 217 VAL 217 A CYS 218 n 218 CYS 218 A PHE 219 n 219 PHE 219 A LEU 220 n 220 LEU 220 A MET 221 n 221 MET 221 A PRO 222 n 222 PRO 222 A LEU 223 n 223 LEU 223 A LEU 224 n 224 LEU 224 A VAL 225 n 225 VAL 225 A GLY 226 n 226 GLY 226 A LEU 227 n 227 LEU 227 A ASP 228 n 228 ASP 228 A GLY 229 n 229 GLY 229 A ARG 230 n 230 ARG 230 A GLU 231 n 231 GLU 231 A LYS 232 n 232 LYS 232 A MET 233 n 233 MET 233 A SER 234 n 234 SER 234 A LYS 235 n 235 LYS 235 A SER 236 n 236 SER 236 A LEU 237 n 237 LEU 237 A ASP 238 n 238 ASP 238 A ASN 239 n 239 ASN 239 A TYR 240 n 240 TYR 240 A ILE 241 n 241 ILE 241 A GLY 242 n 242 GLY 242 A LEU 243 n 243 LEU 243 A THR 244 n 244 THR 244 A GLU 245 n 245 GLU 245 A PRO 246 n 246 PRO 246 A PRO 247 n 247 PRO 247 A GLU 248 n 248 GLU 248 A ALA 249 n 249 ALA 249 A MET 250 n 250 MET 250 A PHE 251 n 251 PHE 251 A LYS 252 n 252 LYS 252 A LYS 253 n 253 LYS 253 A LEU 254 n 254 LEU 254 A MET 255 n 255 MET 255 A ARG 256 n 256 ARG 256 A VAL 257 n 257 VAL 257 A PRO 258 n 258 PRO 258 A ASP 259 n 259 ASP 259 A PRO 260 n 260 PRO 260 A LEU 261 n 261 LEU 261 A LEU 262 n 262 LEU 262 A PRO 263 n 263 PRO 263 A SER 264 n 264 SER 264 A TYR 265 n 265 TYR 265 A PHE 266 n 266 PHE 266 A ARG 267 n 267 ARG 267 A LEU 268 n 268 LEU 268 A LEU 269 n 269 LEU 269 A THR 270 n 270 THR 270 A ASP 271 n 271 ASP 271 A LEU 272 n 272 LEU 272 A GLU 273 n 273 GLU 273 A GLU 274 n 274 GLU 274 A GLU 275 n 275 GLU 275 A GLU 276 n 276 GLU 276 A ILE 277 n 277 ILE 277 A GLU 278 n 278 GLU 278 A ALA 279 n 279 ALA 279 A LEU 280 n 280 LEU 280 A LEU 281 n 281 LEU 281 A LYS 282 n 282 LYS 282 A ALA 283 n 283 ALA 283 A GLY 284 n 284 GLY 284 A PRO 285 n 285 PRO 285 A VAL 286 n 286 VAL 286 A PRO 287 n 287 PRO 287 A ALA 288 n 288 ALA 288 A HIS 289 n 289 HIS 289 A ARG 290 n 290 ARG 290 A VAL 291 n 291 VAL 291 A LEU 292 n 292 LEU 292 A ALA 293 n 293 ALA 293 A ARG 294 n 294 ARG 294 A LEU 295 n 295 LEU 295 A LEU 296 n 296 LEU 296 A THR 297 n 297 THR 297 A ALA 298 n 298 ALA 298 A ALA 299 n 299 ALA 299 A TYR 300 n 300 TYR 300 A ALA 301 n 301 ALA 301 A LEU 302 n 302 LEU 302 A PRO 303 n 303 PRO 303 A GLN 304 n 304 GLN 304 A ILE 305 n 305 ILE 305 A PRO 306 n 306 PRO 306 A PRO 307 n 307 PRO 307 A ARG 308 n 308 ARG 308 A ILE 309 n 309 ILE 309 A ASP 310 n 310 ASP 310 A ARG 311 n 311 ARG 311 A ALA 312 n 312 ALA 312 A PHE 313 n 313 PHE 313 A TYR 314 n 314 TYR 314 A GLU 315 n 315 GLU 315 A SER 316 n 316 SER 316 A LEU 317 n 317 LEU 317 A GLY 318 n 318 GLY 318 A TYR 319 n 319 TYR 319 A ALA 320 n 320 ALA 320 A TRP 321 n 321 TRP 321 A GLU 322 n 322 GLU 322 A ALA 323 n 323 ALA 323 A PHE 324 n 324 PHE 324 A GLY 325 n 325 GLY 325 A ARG 326 n 326 ARG 326 A ASP 327 n 327 ASP 327 A LYS 328 n 328 LYS 328 A GLU 329 n 329 GLU 329 A ALA 330 n 330 ALA 330 A GLY 331 n 331 GLY 331 A PRO 332 n 332 PRO 332 A GLU 333 n 333 GLU 333 A GLU 334 n 334 GLU 334 A VAL 335 n 335 VAL 335 A ARG 336 n 336 ARG 336 A ARG 337 n 337 ARG 337 A ALA 338 n 338 ALA 338 A GLU 339 n 339 GLU 339 A ALA 340 n 340 ALA 340 A ARG 341 n 341 ARG 341 A TYR 342 n 342 TYR 342 A ASP 343 n 343 ASP 343 A GLU 344 n 344 GLU 344 A VAL 345 n 345 VAL 345 A ALA 346 n 346 ALA 346 A LYS 347 n 347 LYS 347 A GLY 348 n 348 GLY 348 A GLY 349 n 349 GLY 349 A ILE 350 n 350 ILE 350 A PRO 351 n 351 PRO 351 A GLU 352 n 352 GLU 352 A GLU 353 n 353 GLU 353 A ILE 354 n 354 ILE 354 A PRO 355 n 355 PRO 355 A GLU 356 n 356 GLU 356 A VAL 357 n 357 VAL 357 A THR 358 n 358 THR 358 A ILE 359 n 359 ILE 359 A PRO 360 n 360 PRO 360 A ALA 361 n 361 ALA 361 A SER 362 n 362 SER 362 A GLU 363 n 363 GLU 363 A LEU 364 n 364 LEU 364 A LYS 365 n 365 LYS 365 A GLU 366 n 366 GLU 366 A GLY 367 n 367 GLY 367 A ARG 368 n 368 ARG 368 A ILE 369 n 369 ILE 369 A TRP 370 n 370 TRP 370 A VAL 371 n 371 VAL 371 A ALA 372 n 372 ALA 372 A ARG 373 n 373 ARG 373 A LEU 374 n 374 LEU 374 A PHE 375 n 375 PHE 375 A THR 376 n 376 THR 376 A LEU 377 n 377 LEU 377 A ALA 378 n 378 ALA 378 A GLY 379 n 379 GLY 379 A LEU 380 n 380 LEU 380 A THR 381 n 381 THR 381 A PRO 382 n 382 PRO 382 A SER 383 n 383 SER 383 A ASN 384 n 384 ASN 384 A ALA 385 n 385 ALA 385 A GLU 386 n 386 GLU 386 A ALA 387 n 387 ALA 387 A ARG 388 n 388 ARG 388 A ARG 389 n 389 ARG 389 A LEU 390 n 390 LEU 390 A ILE 391 n 391 ILE 391 A GLN 392 n 392 GLN 392 A ASN 393 n 393 ASN 393 A ARG 394 n 394 ARG 394 A GLY 395 n 395 GLY 395 A LEU 396 n 396 LEU 396 A ARG 397 n 397 ARG 397 A LEU 398 n 398 LEU 398 A ASP 399 n 399 ASP 399 A GLY 400 n 400 GLY 400 A GLU 401 n 401 GLU 401 A VAL 402 n 402 VAL 402 A LEU 403 n 403 LEU 403 A THR 404 n 404 THR 404 A ASP 405 n 405 ASP 405 A PRO 406 n 406 PRO 406 A MET 407 n 407 MET 407 A LEU 408 n 408 LEU 408 A GLN 409 n 409 GLN 409 A VAL 410 n 410 VAL 410 A ASP 411 n 411 ASP 411 A LEU 412 n 412 LEU 412 A SER 413 n 413 SER 413 A ARG 414 n 414 ARG 414 A PRO 415 n 415 PRO 415 A ARG 416 n 416 ARG 416 A ILE 417 n 417 ILE 417 A LEU 418 n 418 LEU 418 A GLN 419 n 419 GLN 419 A ARG 420 n 420 ARG 420 A GLY 421 n 421 GLY 421 A LYS 422 n 422 LYS 422 A ASP 423 n 423 ASP 423 A ARG 424 n 424 ARG 424 A PHE 425 n 425 PHE 425 A VAL 426 n 426 VAL 426 A ARG 427 n 427 ARG 427 A VAL 428 n 428 VAL 428 A ARG 429 n 429 ARG 429 A LEU 430 n 430 LEU 430 A SER 431 n 431 SER 431 A ASP 432 n 432 ASP 432 A G 1 n 1 G 1 B G 2 n 2 G 2 B G 3 n 3 G 3 B C 4 n 4 C 4 B A 5 n 5 A 5 B G 6 n 6 G 6 B G 7 n 7 G 7 B U 8 n 8 U 8 B U 9 n 9 U 9 B C 10 n 10 C 10 B C 11 n 11 C 11 B C 12 n 12 C 12 B G 13 n 13 G 13 B A 14 n 14 A 14 B G 15 n 15 G 15 B C 16 n 16 C 16 B G 18 n 17 G 18 B G 19 n 18 G 19 B C 20 n 19 C 20 B C 20 n 20 A C 20 B A 20 n 21 B A 20 B A 21 n 22 A 21 B A 22 n 23 A 22 B G 23 n 24 G 23 B G 24 n 25 G 24 B G 25 n 26 G 25 B G 26 n 27 G 26 B A 27 n 28 A 27 B C 28 n 29 C 28 B G 29 n 30 G 29 B G 30 n 31 G 30 B U 31 n 32 U 31 B C 32 n 33 C 32 B U 33 n 34 U 33 B G 34 n 35 G 34 B PSU 35 n 36 PSU 35 B A 36 n 37 A 36 B A 37 n 38 A 37 B A 38 n 39 A 38 B A 39 n 40 A 39 B C 40 n 41 C 40 B C 41 n 42 C 41 B G 42 n 43 G 42 B U 43 n 44 U 43 B U 44 n 45 U 44 B G 45 n 46 G 45 B G 46 n 47 G 46 B C 47 n 48 C 47 B G 47 n 49 A G 47 B U 47 n 50 B U 47 B A 47 n 51 C A 47 B U 47 n 52 D U 47 B G 47 n 53 E G 47 B C 47 n 54 F C 47 B C 47 n 55 G C 47 B U 47 n 56 H U 47 B U 47 n 57 I U 47 B C 48 n 58 C 48 B G 49 n 59 G 49 B C 50 n 60 C 50 B U 51 n 61 U 51 B G 52 n 62 G 52 B G 53 n 63 G 53 B 5MU 54 n 64 5MU 54 B PSU 55 n 65 PSU 55 B C 56 n 66 C 56 B G 57 n 67 G 57 B 1MA 58 n 68 1MA 58 B A 59 n 69 A 59 B U 60 n 70 U 60 B C 61 n 71 C 61 B C 62 n 72 C 62 B A 63 n 73 A 63 B G 64 n 74 G 64 B C 65 n 75 C 65 B C 66 n 76 C 66 B C 67 n 77 C 67 B U 68 n 78 U 68 B G 69 n 79 G 69 B C 70 n 80 C 70 B C 71 n 81 C 71 B C 72 n 82 C 72 B A 73 n 83 A 73 B C 74 n 84 C 74 B n 85 75 B n 86 76 B author_and_software_defined_assembly PISA 4 tetrameric 14440 -110.8 55830 B PSU 35 PSEUDOURIDINE-5'-MONOPHOSPHATE B PSU 36 U B 5MU 54 5-METHYLURIDINE 5'-MONOPHOSPHATE B 5MU 64 U B PSU 55 PSEUDOURIDINE-5'-MONOPHOSPHATE B PSU 65 U B 1MA 58 B 1MA 68 A 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_646 y+1,x-1,-z+1 crystal symmetry operation 194.2875000000 -112.1719404252 109.4510000000 A N VAL 23 A N VAL 23 A O CYS 218 A O CYS 218 A N PHE 219 A N PHE 219 A O GLU 191 A O GLU 191 A N VAL 190 A N VAL 190 A O THR 39 A O THR 39 A N VAL 40 A N VAL 40 A O LYS 71 A O LYS 71 A N LEU 74 A N LEU 74 A O GLU 124 A O GLU 124 A N VAL 357 A N VAL 357 A O ARG 427 A O ARG 427 A N VAL 428 A N VAL 428 A O ARG 416 A O ARG 416 A N GLN 419 A N GLN 419 A O ARG 397 A O ARG 397 A N LEU 398 A N LEU 398 A O GLU 401 A O GLU 401 A N ILE 369 A N ILE 369 A O VAL 410 A O VAL 410 1 B N1 C 16 B N1 C 16 1 Y 1 B C2 C 16 B C2 C 16 1 Y 1 B O2 C 16 B O2 C 16 1 Y 1 B N3 C 16 B N3 C 16 1 Y 1 B C4 C 16 B C4 C 16 1 Y 1 B N4 C 16 B N4 C 16 1 Y 1 B C5 C 16 B C5 C 16 1 Y 1 B C6 C 16 B C6 C 16 1 Y D 1 B N1 U 47 B N1 U 52 1 Y D 1 B C2 U 47 B C2 U 52 1 Y D 1 B O2 U 47 B O2 U 52 1 Y D 1 B N3 U 47 B N3 U 52 1 Y D 1 B C4 U 47 B C4 U 52 1 Y D 1 B O4 U 47 B O4 U 52 1 Y D 1 B C5 U 47 B C5 U 52 1 Y D 1 B C6 U 47 B C6 U 52 1 Y 1 B C5' C 74 B C5' C 84 1 Y 1 B C4' C 74 B C4' C 84 1 Y 1 B O4' C 74 B O4' C 84 1 Y 1 B C3' C 74 B C3' C 84 1 Y 1 B O3' C 74 B O3' C 84 1 Y 1 B C2' C 74 B C2' C 84 1 Y 1 B O2' C 74 B O2' C 84 1 Y 1 B C1' C 74 B C1' C 84 1 Y 1 B N1 C 74 B N1 C 84 1 Y 1 B C2 C 74 B C2 C 84 1 Y 1 B O2 C 74 B O2 C 84 1 Y 1 B N3 C 74 B N3 C 84 1 Y 1 B C4 C 74 B C4 C 84 1 Y 1 B N4 C 74 B N4 C 84 1 Y 1 B C5 C 74 B C5 C 84 1 Y 1 B C6 C 74 B C6 C 84 1 Y 1 A MET 1 A MET 1 1 Y 1 A ALA 2 A ALA 2 1 Y 1 A GLY 3 A GLY 3 1 Y 1 A THR 4 A THR 4 1 Y 1 A GLY 5 A GLY 5 1 Y 1 B C 75 B C 85 1 Y 1 B A 76 B A 86 1 Y 1 A TYR 300 0.063 SIDE CHAIN 1 B B P OP3 G G 1 1 -0.089 0.012 1.607 1.518 N 1 A PRO 8 -43.43 -72.03 1 A GLU 9 -37.32 -39.89 1 A GLU 20 -60.44 -71.26 1 A PRO 46 -64.31 63.98 1 A ASP 50 67.98 138.11 1 A ARG 89 -38.95 137.32 1 A PRO 120 -31.78 -31.77 1 A ALA 164 -65.20 0.27 1 A PRO 167 -38.45 133.09 1 A ARG 187 39.65 53.94 1 A ARG 230 -102.76 -68.32 1 A ASN 239 -152.99 23.09 1 A PRO 260 -55.10 -4.01 1 A PRO 285 -60.71 -70.83 1 A GLU 333 -67.79 23.11 1 A GLU 334 -134.46 -34.55 1 A GLU 352 -53.84 -71.75 1 A ALA 361 -39.75 -38.43 1 A ARG 368 -119.26 -161.31 1 A THR 404 -150.28 -7.61 1 A PRO 415 -46.04 157.61 1 A ASP 423 -140.37 55.35 PROTEIN_REP.PARAM PROTEIN.TOP DNA-RNA.PARAM DNA-RNA.TOP WATER_REP.PARAM WATER.TOP ION.PARAM ION.TOP 77.3 10.06 22.22 0.00 10.06 0.00 -20.13 BASES OF TRNA NUCLEOTIDES 16,20,474, 74 OMITTED: NOT VISIBLE IN ELECTRON DENSITY. UNIDENTIFIED MODIFIED BASES IN THE TRNA(E.G ADE-37 IN CHAIN B) HAVE NOT BEEN MODELED. 0.269 0.008 0.219 0.219 2.90 22.99 1149 22644 5.1 94.9 RANDOM 1216869.71 0.000000 1 RESTRAINED THROUGHOUT 0.0 MOLECULAR REPLACEMENT T. THERMOPHILUS TYROSYL-TRNA SYNTHETASE PREVIOUSLY DETERMINED BY SIRAS BY SAME AUTHORS FLAT MODEL 46.8415 0.337167 0.47 0.38 5.00 0.71 0.63 2.90 22.99 13 5221 43 1762 3403 0.007 1.3 26.9 1.26 1.21 1.50 2.09 2.00 5.35 3.00 8.15 4.00 0.391 0.031 0.367 3.08 155 2774 6 5.3 74.7 115.5 2.900 23.000 1H3E 22669 0.07500 1 5.9000 3.400 94.9 0.50900 2.90 2.98 1.500 1 1.80 63.8 refinement CNS 1.0 data reduction MOSFLM data scaling SCALA phasing MOLREP TYROSYL-TRNA SYNTHETASE (E.C.6.1.1.1) Tyrosyl-tRNA synthetase from Thermus thermophilus complexed with wild-type tRNAtyr(GUA) and with ATP and tyrosinol 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N THE TETRAMER IS ACTUALLY A DIMER OF CHAIN A, EACH ASSOCIATED WITH A MOLECULE OF CHAIN B GIVING RISE TO A TETRAMERIC STATE A THR 7 A THR 7 HELX_P A ARG 17 A ARG 17 1 1 11 A PRO 24 A PRO 24 HELX_P A GLU 34 A GLU 34 1 2 11 A HIS 52 A HIS 52 HELX_P A GLU 67 A GLU 67 1 3 16 A PHE 79 A PHE 79 HELX_P A GLY 84 A GLY 84 1 4 6 A THR 97 A THR 97 HELX_P A GLY 113 A GLY 113 1 5 17 A ASN 128 A ASN 128 HELX_P A GLU 133 A GLU 133 1 6 6 A THR 136 A THR 136 HELX_P A THR 144 A THR 144 1 7 9 A SER 145 A SER 145 HELX_P A MET 147 A MET 147 5 8 3 A THR 148 A THR 148 HELX_P A LEU 153 A LEU 153 1 9 6 A ARG 155 A ARG 155 HELX_P A ALA 164 A ALA 164 1 10 10 A SER 169 A SER 169 HELX_P A LEU 173 A LEU 173 5 11 5 A LEU 174 A LEU 174 HELX_P A ILE 186 A ILE 186 1 12 13 A GLN 197 A GLN 197 HELX_P A TYR 211 A TYR 211 1 13 15 A PRO 246 A PRO 246 HELX_P A MET 255 A MET 255 1 14 10 A PRO 258 A PRO 258 HELX_P A PRO 260 A PRO 260 5 15 3 A LEU 261 A LEU 261 HELX_P A THR 270 A THR 270 1 16 10 A GLU 273 A GLU 273 HELX_P A GLY 284 A GLY 284 1 17 12 A GLY 284 A GLY 284 HELX_P A TYR 300 A TYR 300 1 18 17 A ASP 310 A ASP 310 HELX_P A LEU 317 A LEU 317 1 19 8 A ALA 320 A ALA 320 HELX_P A PHE 324 A PHE 324 5 20 5 A GLU 334 A GLU 334 HELX_P A GLY 348 A GLY 348 1 21 15 A PRO 360 A PRO 360 HELX_P A LEU 364 A LEU 364 5 22 5 A VAL 371 A VAL 371 HELX_P A ALA 378 A ALA 378 1 23 8 A SER 383 A SER 383 HELX_P A ASN 393 A ASN 393 1 24 11 covale 1.599 both B G 34 B O3' G 35 1_555 B PSU 35 B P PSU 36 1_555 covale 1.605 both B PSU 35 B O3' PSU 36 1_555 B A 36 B P A 37 1_555 covale 1.608 both B G 53 B O3' G 63 1_555 B 5MU 54 B P 5MU 64 1_555 covale 1.608 both B 5MU 54 B O3' 5MU 64 1_555 B PSU 55 B P PSU 65 1_555 covale 1.610 both B PSU 55 B O3' PSU 65 1_555 B C 56 B P C 66 1_555 covale 1.603 both B G 57 B O3' G 67 1_555 B 1MA 58 B P 1MA 68 1_555 covale 1.605 both B 1MA 58 B O3' 1MA 68 1_555 B A 59 B P A 69 1_555 hydrog WATSON-CRICK B G 1 B N1 G 1 1_555 B C 72 B N3 C 82 1_555 hydrog WATSON-CRICK B G 1 B N2 G 1 1_555 B C 72 B O2 C 82 1_555 hydrog WATSON-CRICK B G 1 B O6 G 1 1_555 B C 72 B N4 C 82 1_555 hydrog WATSON-CRICK B G 2 B N1 G 2 1_555 B C 71 B N3 C 81 1_555 hydrog WATSON-CRICK B G 2 B N2 G 2 1_555 B C 71 B O2 C 81 1_555 hydrog WATSON-CRICK B G 2 B O6 G 2 1_555 B C 71 B N4 C 81 1_555 hydrog WATSON-CRICK B G 3 B N1 G 3 1_555 B C 70 B N3 C 80 1_555 hydrog WATSON-CRICK B G 3 B N2 G 3 1_555 B C 70 B O2 C 80 1_555 hydrog WATSON-CRICK B G 3 B O6 G 3 1_555 B C 70 B N4 C 80 1_555 hydrog WATSON-CRICK B C 4 B N3 C 4 1_555 B G 69 B N1 G 79 1_555 hydrog WATSON-CRICK B C 4 B N4 C 4 1_555 B G 69 B O6 G 79 1_555 hydrog WATSON-CRICK B C 4 B O2 C 4 1_555 B G 69 B N2 G 79 1_555 hydrog WATSON-CRICK B A 5 B N1 A 5 1_555 B U 68 B N3 U 78 1_555 hydrog WATSON-CRICK B A 5 B N6 A 5 1_555 B U 68 B O4 U 78 1_555 hydrog WATSON-CRICK B G 6 B N1 G 6 1_555 B C 67 B N3 C 77 1_555 hydrog WATSON-CRICK B G 6 B N2 G 6 1_555 B C 67 B O2 C 77 1_555 hydrog WATSON-CRICK B G 6 B O6 G 6 1_555 B C 67 B N4 C 77 1_555 hydrog WATSON-CRICK B G 7 B N1 G 7 1_555 B C 66 B N3 C 76 1_555 hydrog WATSON-CRICK B G 7 B N2 G 7 1_555 B C 66 B O2 C 76 1_555 hydrog WATSON-CRICK B G 7 B O6 G 7 1_555 B C 66 B N4 C 76 1_555 hydrog REVERSED HOOGSTEEN B U 8 B N3 U 8 1_555 B A 14 B N7 A 14 1_555 hydrog REVERSED HOOGSTEEN B U 8 B O2 U 8 1_555 B A 14 B N6 A 14 1_555 hydrog U-G MISPAIR B U 9 B O4 U 9 1_555 B G 13 B N2 G 13 1_555 hydrog WATSON-CRICK B C 10 B N3 C 10 1_555 B G 25 B N1 G 26 1_555 hydrog WATSON-CRICK B C 10 B N4 C 10 1_555 B G 25 B O6 G 26 1_555 hydrog WATSON-CRICK B C 10 B O2 C 10 1_555 B G 25 B N2 G 26 1_555 hydrog WATSON-CRICK B C 11 B N3 C 11 1_555 B G 24 B N1 G 25 1_555 hydrog WATSON-CRICK B C 11 B N4 C 11 1_555 B G 24 B O6 G 25 1_555 hydrog WATSON-CRICK B C 11 B O2 C 11 1_555 B G 24 B N2 G 25 1_555 hydrog WATSON-CRICK B C 12 B N3 C 12 1_555 B G 23 B N1 G 24 1_555 hydrog WATSON-CRICK B C 12 B N4 C 12 1_555 B G 23 B O6 G 24 1_555 hydrog WATSON-CRICK B C 12 B O2 C 12 1_555 B G 23 B N2 G 24 1_555 hydrog TYPE_11_PAIR B G 13 B N2 G 13 1_555 B A 22 B N7 A 23 1_555 hydrog TYPE_11_PAIR B G 13 B N3 G 13 1_555 B A 22 B N6 A 23 1_555 hydrog A-A MISPAIR B A 14 B N6 A 14 1_555 B A 21 B N3 A 22 1_555 hydrog G-C PAIR A B G 15 B N2 G 15 1_555 B C 20 B N3 C 20 1_555 hydrog REVERSED WATSON-CRICK B G 15 B N1 G 15 1_555 B C 48 B O2 C 58 1_555 hydrog REVERSED WATSON-CRICK B G 15 B N2 G 15 1_555 B C 48 B N3 C 58 1_555 hydrog G-PSU MISPAIR B G 18 B N2 G 17 1_555 B PSU 55 B O4 PSU 65 1_555 hydrog WATSON-CRICK B G 19 B N1 G 18 1_555 B C 56 B N3 C 66 1_555 hydrog WATSON-CRICK B G 19 B N2 G 18 1_555 B C 56 B O2 C 66 1_555 hydrog WATSON-CRICK B G 19 B O6 G 18 1_555 B C 56 B N4 C 66 1_555 hydrog REVERSED HOOGSTEEN B H B A 20 B N6 A 21 1_555 B U 47 B O2 U 56 1_555 hydrog REVERSED HOOGSTEEN B H B A 20 B N7 A 21 1_555 B U 47 B N3 U 56 1_555 hydrog C-C MISPAIR A B C 20 B O2 C 20 1_555 B C 48 B N4 C 58 1_555 hydrog A-U PAIR I B A 21 B N6 A 22 1_555 B U 47 B O2 U 57 1_555 hydrog TYPE_28_PAIR B G 26 B N1 G 27 1_555 B U 44 B O2 U 45 1_555 hydrog TYPE_28_PAIR B G 26 B O6 G 27 1_555 B U 44 B N3 U 45 1_555 hydrog WATSON-CRICK B A 27 B N1 A 28 1_555 B U 43 B N3 U 44 1_555 hydrog WATSON-CRICK B A 27 B N6 A 28 1_555 B U 43 B O4 U 44 1_555 hydrog WATSON-CRICK B C 28 B N3 C 29 1_555 B G 42 B N1 G 43 1_555 hydrog WATSON-CRICK B C 28 B N4 C 29 1_555 B G 42 B O6 G 43 1_555 hydrog WATSON-CRICK B C 28 B O2 C 29 1_555 B G 42 B N2 G 43 1_555 hydrog WATSON-CRICK B G 29 B N1 G 30 1_555 B C 41 B N3 C 42 1_555 hydrog WATSON-CRICK B G 29 B N2 G 30 1_555 B C 41 B O2 C 42 1_555 hydrog WATSON-CRICK B G 29 B O6 G 30 1_555 B C 41 B N4 C 42 1_555 hydrog WATSON-CRICK B G 30 B N1 G 31 1_555 B C 40 B N3 C 41 1_555 hydrog WATSON-CRICK B G 30 B N2 G 31 1_555 B C 40 B O2 C 41 1_555 hydrog WATSON-CRICK B G 30 B O6 G 31 1_555 B C 40 B N4 C 41 1_555 hydrog WATSON-CRICK B U 31 B N3 U 32 1_555 B A 39 B N1 A 40 1_555 hydrog WATSON-CRICK B U 31 B O4 U 32 1_555 B A 39 B N6 A 40 1_555 hydrog C-A MISPAIR B C 32 B O2 C 33 1_555 B A 37 B N6 A 38 1_555 hydrog C-A MISPAIR B C 32 B O2 C 33 1_555 B A 38 B N6 A 39 1_555 hydrog WATSON-CRICK G B G 45 B N1 G 46 1_555 B C 47 B N3 C 55 1_555 hydrog WATSON-CRICK G B G 45 B N2 G 46 1_555 B C 47 B O2 C 55 1_555 hydrog WATSON-CRICK G B G 45 B O6 G 46 1_555 B C 47 B N4 C 55 1_555 hydrog WATSON-CRICK F B G 46 B N1 G 47 1_555 B C 47 B N3 C 54 1_555 hydrog WATSON-CRICK G B G 46 B N1 G 47 1_555 B C 47 B N3 C 55 1_555 hydrog WATSON-CRICK F B G 46 B N2 G 47 1_555 B C 47 B O2 C 54 1_555 hydrog WATSON-CRICK G B G 46 B N2 G 47 1_555 B C 47 B O2 C 55 1_555 hydrog WATSON-CRICK F B G 46 B O6 G 47 1_555 B C 47 B N4 C 54 1_555 hydrog WATSON-CRICK G B G 46 B O6 G 47 1_555 B C 47 B N4 C 55 1_555 hydrog WATSON-CRICK E B C 47 B N3 C 48 1_555 B G 47 B N1 G 53 1_555 hydrog WATSON-CRICK E B C 47 B N4 C 48 1_555 B G 47 B O6 G 53 1_555 hydrog WATSON-CRICK E B C 47 B O2 C 48 1_555 B G 47 B N2 G 53 1_555 hydrog WATSON-CRICK B G 49 B N1 G 59 1_555 B C 65 B N3 C 75 1_555 hydrog WATSON-CRICK B G 49 B N2 G 59 1_555 B C 65 B O2 C 75 1_555 hydrog WATSON-CRICK B G 49 B O6 G 59 1_555 B C 65 B N4 C 75 1_555 hydrog WATSON-CRICK B C 50 B N3 C 60 1_555 B G 64 B N1 G 74 1_555 hydrog WATSON-CRICK B C 50 B N4 C 60 1_555 B G 64 B O6 G 74 1_555 hydrog WATSON-CRICK B C 50 B O2 C 60 1_555 B G 64 B N2 G 74 1_555 hydrog WATSON-CRICK B U 51 B N3 U 61 1_555 B A 63 B N1 A 73 1_555 hydrog WATSON-CRICK B U 51 B O4 U 61 1_555 B A 63 B N6 A 73 1_555 hydrog WATSON-CRICK B G 52 B N1 G 62 1_555 B C 62 B N3 C 72 1_555 hydrog WATSON-CRICK B G 52 B N2 G 62 1_555 B C 62 B O2 C 72 1_555 hydrog WATSON-CRICK B G 52 B O6 G 62 1_555 B C 62 B N4 C 72 1_555 hydrog WATSON-CRICK B G 53 B N1 G 63 1_555 B C 61 B N3 C 71 1_555 hydrog WATSON-CRICK B G 53 B N2 G 63 1_555 B C 61 B O2 C 71 1_555 hydrog WATSON-CRICK B G 53 B O6 G 63 1_555 B C 61 B N4 C 71 1_555 hydrog REVERSED HOOGSTEEN B 5MU 54 B N3 5MU 64 1_555 B 1MA 58 B N7 1MA 68 1_555 hydrog REVERSED HOOGSTEEN B 5MU 54 B O2 5MU 64 1_555 B 1MA 58 B N6 1MA 68 1_555 LIGASE LIGASE, CLASS I AMINOACYL-TRNA SYNTHETASE: ATP + L-TYROSINE + TRNA(TYR) -> AMP + PPI + L-TYROSYL-TRNA(TYR) A VAL 23 A VAL 23 1 A PRO 24 A PRO 24 -1.25 SYY_THETH UNP 1 P83453 1H3E PDB 2 1H3E 1 432 1H3E 1 432 P83453 A 1 1 432 1 76 1H3E 1 76 1H3E B 2 1 86 6 5 2 anti-parallel parallel parallel parallel parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLU 21 A GLU 21 A VAL 23 A VAL 23 A VAL 217 A VAL 217 A MET 221 A MET 221 A VAL 190 A VAL 190 A GLY 194 A GLY 194 A THR 39 A THR 39 A ALA 44 A ALA 44 A LYS 71 A LYS 71 A ILE 76 A ILE 76 A PHE 123 A PHE 123 A TYR 127 A TYR 127 A GLU 356 A GLU 356 A ILE 359 A ILE 359 A ARG 424 A ARG 424 A LEU 430 A LEU 430 A ARG 416 A ARG 416 A ARG 420 A ARG 420 A LEU 396 A LEU 396 A LEU 398 A LEU 398 A GLU 401 A GLU 401 A VAL 402 A VAL 402 A ILE 369 A ILE 369 A TRP 370 A TRP 370 A GLN 409 A GLN 409 A VAL 410 A VAL 410 BINDING SITE FOR RESIDUE ATP A 1433 Software 19 BINDING SITE FOR RESIDUE TYE A 1434 Software 10 A GLY 43 A GLY 43 19 1_555 A ALA 44 A ALA 44 19 1_555 A ASP 45 A ASP 45 19 1_555 A HIS 52 A HIS 52 19 1_555 A GLY 54 A GLY 54 19 1_555 A HIS 55 A HIS 55 19 1_555 A VAL 58 A VAL 58 19 1_555 A ARG 93 A ARG 93 19 1_555 A GLY 193 A GLY 193 19 1_555 A GLY 194 A GLY 194 19 1_555 A GLN 197 A GLN 197 19 1_555 A PRO 222 A PRO 222 19 1_555 A LEU 223 A LEU 223 19 1_555 A LEU 224 A LEU 224 19 1_555 A LYS 232 A LYS 232 19 1_555 A MET 233 A MET 233 19 1_555 A SER 234 A SER 234 19 1_555 A LYS 235 A LYS 235 19 1_555 A TYE 1434 D TYE 19 1_555 A LYS 41 A LYS 41 10 1_555 A GLY 43 A GLY 43 10 1_555 A ASP 45 A ASP 45 10 1_555 A ASP 85 A ASP 85 10 1_555 A TYR 175 A TYR 175 10 1_555 A GLN 179 A GLN 179 10 1_555 A ASP 182 A ASP 182 10 1_555 A GLU 191 A GLU 191 10 1_555 A GLN 197 A GLN 197 10 1_555 A ATP 1433 C ATP 10 1_555 152 P 31 2 1