0.007721
0.004457
0.000000
0.000000
0.008915
0.000000
0.000000
0.000000
0.009137
0.00000
0.00000
0.00000
Cusack, S.
Yaremchuk, A.
Kriklivyi, I.
Tukalo, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
129.525
129.525
109.451
C11 H16 N5 O7 P
361.248
n
6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
RNA linking
C10 H15 N2 O9 P
338.208
n
5-METHYLURIDINE 5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H16 N5 O13 P3
507.181
ADENOSINE-5'-TRIPHOSPHATE
non-polymer
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C9 H13 N2 O9 P
324.181
n
PSEUDOURIDINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H13 N O2
167.205
n
4-[(2S)-2-amino-3-hydroxypropyl]phenol
tyrosinol, bound form of TYROSINAL
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Embo J.
EMJODG
0897
0261-4189
21
3829
10.1093/EMBOJ/CDF373
12110594
Class I Tyrosyl-tRNA Synthetase Has a Class II Mode or tRNA Recognition
2002
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
2001-02-15
ADSC CCD
SINGLE WAVELENGTH
M
x-ray
1
0.9393
1.0
ID14-4
ESRF
0.9393
SYNCHROTRON
ESRF BEAMLINE ID14-4
48786.203
TYROSYL-TRNA SYNTHETASE
6.1.1.1
1
man
polymer
27709.508
WILD-TYPE TRNATYR(GUA)
1
syn
polymer
507.181
ADENOSINE-5'-TRIPHOSPHATE
1
syn
non-polymer
167.205
4-[(2S)-2-amino-3-hydroxypropyl]phenol
1
syn
non-polymer
18.015
water
13
nat
water
TYROSINE--TRNA LIGASE
no
no
MAGTGHTPEEALALLKRGAEEIVPEEELLAKLKEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQELGHKVVLIIGDFT
GMIGDPSGRSKTRPPLTLEETRENAKTYVAQAGKILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKK
RYEAGIPISLHELLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDNY
IGLTEPPEAMFKKLMRVPDPLLPSYFRLLTDLEEEEIEALLKAGPVPAHRVLARLLTAAYALPQIPPRIDRAFYESLGYA
WEAFGRDKEAGPEEVRRAEARYDEVAKGGIPEEIPEVTIPASELKEGRIWVARLFTLAGLTPSNAEARRLIQNRGLRLDG
EVLTDPMLQVDLSRPRILQRGKDRFVRVRLSD
MAGTGHTPEEALALLKRGAEEIVPEEELLAKLKEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQELGHKVVLIIGDFT
GMIGDPSGRSKTRPPLTLEETRENAKTYVAQAGKILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKK
RYEAGIPISLHELLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDNY
IGLTEPPEAMFKKLMRVPDPLLPSYFRLLTDLEEEEIEALLKAGPVPAHRVLARLLTAAYALPQIPPRIDRAFYESLGYA
WEAFGRDKEAGPEEVRRAEARYDEVAKGGIPEEIPEVTIPASELKEGRIWVARLFTLAGLTPSNAEARRLIQNRGLRLDG
EVLTDPMLQVDLSRPRILQRGKDRFVRVRLSD
A
polypeptide(L)
no
yes
GGGCAGGUUCCCGAGCGGCCAAAGGGGACGGUCUG(PSU)AAAACCGUUGGCGUAUGCCUUCGCUGG(5MU)(PSU)CG
(1MA)AUCCAGCCCUGCCCACCA
GGGCAGGUUCCCGAGCGGCCAAAGGGGACGGUCUGUAAAACCGUUGGCGUAUGCCUUCGCUGGUUCGAAUCCAGCCCUGC
CCACCA
B
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HB27
sample
262724
THERMUS THERMOPHILUS
469008
ESCHERICHIA COLI
BL21(DE3)
PET29B
PLASMID
1
3.63
65.8
7.00
DROP: 5MG/ML TYRRSTT+TRNA(TYR)WITH 5MM TYROSINOL, 10MM MGCL2, 10MM ATP, 50MM HEPES (PH7.0), 0.8M AMMONIUM SULPHATE. RESERVOIR: 1.5-1.6M AMMONIUM SULPHATE, 100MM HEPES (PH7.0)., pH 7.00
7.527
1
19
B
1
B
72
-0.348
B_G1:C72_B
1
-18.701
-0.057
0.015
-0.111
-17.846
1
19
B
2
B
71
3.089
B_G2:C71_B
2
-10.788
-0.037
-0.557
-0.041
-7.821
1
19
B
3
B
70
-0.644
B_G3:C70_B
3
-8.935
-0.050
-0.145
-0.198
-0.100
1
19
B
4
B
69
0.439
B_C4:G69_B
4
-14.580
0.153
-0.495
-0.190
3.462
1
20
B
5
B
68
-2.846
B_A5:U68_B
5
-12.257
-0.004
0.341
-0.080
1.426
1
19
B
6
B
67
-1.150
B_G6:C67_B
6
-8.905
-0.405
0.313
-0.254
-9.102
1
19
B
7
B
66
-2.681
B_G7:C66_B
7
-2.162
0.066
-0.318
-0.091
-8.310
1
19
B
49
B
65
1.553
B_G49:C65_B
8
-9.731
-0.315
-0.060
0.057
-4.958
1
19
B
50
B
64
3.990
B_C50:G64_B
9
-10.337
0.306
0.282
-0.032
3.766
1
20
B
51
B
63
5.668
B_U51:A63_B
10
-12.253
0.025
-0.005
-0.090
-4.650
1
19
B
52
B
62
1.850
B_G52:C62_B
11
-7.100
-0.136
-0.276
-0.132
-17.617
1
19
B
53
B
61
4.664
B_G53:C61_B
12
-15.781
-0.014
-0.260
-0.061
-10.407
4
24
B
54
B
58
-108.616
B_5MU54:1MA58_B
13
11.003
4.421
-0.172
-2.145
10.896
2
B
55
B
18
-127.327
B_PSU55:G18_B
14
-1.168
0.168
0.138
-5.692
5.594
1
19
E
B
47
B
47
8.966
B_G47E:C47_B
15
26.655
-0.375
0.692
-0.114
5.188
1
19
F
B
47
B
46
0.397
B_C47F:G46_B
16
8.911
0.058
-0.087
0.007
27.671
1
19
G
B
47
B
45
2.871
B_C47G:G45_B
17
-13.831
0.087
-0.737
0.042
-8.849
4
24
H
B
47
B
B
20
-85.237
B_U47H:A20B_B
18
9.796
3.343
1.044
-1.635
-23.256
I
B
47
B
21
-37.116
B_U47I:A21_B
19
-48.084
5.294
0.452
-3.297
3.048
2
22
B
48
B
15
-149.201
B_C48:G15_B
20
-17.597
-0.071
-0.368
-4.022
-25.352
1
19
B
19
B
56
-4.018
B_G19:C56_B
21
-16.775
-0.018
-0.310
-0.026
-12.260
4
24
B
8
B
14
-91.423
B_U8:A14_B
22
13.727
4.235
0.938
-2.494
-3.144
5
11
B
22
B
13
2.685
B_A22:G13_B
23
-1.214
-6.827
-0.612
-3.805
-1.900
1
19
B
23
B
12
0.455
B_G23:C12_B
24
-2.177
-0.388
0.046
-0.141
-6.608
1
19
B
24
B
11
0.876
B_G24:C11_B
25
5.115
-0.128
-0.298
-0.187
-11.262
1
19
B
25
B
10
-1.304
B_G25:C10_B
26
-10.603
-0.195
-0.480
-0.258
1.782
1
28
B
26
B
44
-1.664
B_G26:U44_B
27
-12.063
-2.709
0.042
-0.875
16.302
1
20
B
27
B
43
3.545
B_A27:U43_B
28
-19.432
0.013
0.600
-0.261
9.114
1
19
B
28
B
42
4.413
B_C28:G42_B
29
-17.861
0.403
-0.075
-0.127
6.643
1
19
B
29
B
41
3.590
B_G29:C41_B
30
-0.673
-0.220
0.498
-0.101
-27.932
1
19
B
30
B
40
10.788
B_G30:C40_B
31
-24.969
-0.367
-1.298
-0.148
-10.646
1
20
B
31
B
39
2.252
B_U31:A39_B
32
-11.082
0.009
-0.003
-0.158
-12.914
B
32
B
37
-45.495
B_C32:A37_B
33
22.684
5.897
-0.341
-1.623
2.522
27.237
B
B
1
2
24.131
B
B
72
71
3.780
11.045
-0.911
-2.284
BB_G1G2:C71C72_BB
1
0.926
-2.023
24.919
-7.638
2.168
2.521
35.710
B
B
2
3
12.349
B
B
71
70
2.853
7.505
-0.528
-1.527
BB_G2G3:C70C71_BB
2
-3.853
6.340
34.730
-3.395
0.396
2.872
32.438
B
B
3
4
6.193
B
B
70
69
3.034
3.433
0.204
-1.257
BB_G3C4:G69C70_BB
3
6.273
-11.317
31.661
-2.802
0.643
2.656
37.714
B
B
4
5
14.207
B
B
69
68
3.069
9.099
0.517
-1.390
BB_C4A5:U68G69_BB
4
-0.297
0.463
36.637
-3.197
-0.834
1.963
28.764
B
B
5
6
22.025
B
B
68
67
2.939
10.658
0.921
-2.383
BB_A5G6:C67U68_BB
5
3.801
-7.856
26.489
-6.665
-1.187
2.074
37.430
B
B
6
7
29.300
B
B
67
66
3.431
18.027
-0.072
-1.974
BB_G6G7:C66C67_BB
6
4.283
-6.961
32.666
-5.217
0.621
2.992
32.330
B
B
7
49
4.598
B
B
66
65
3.178
2.558
-0.014
-2.293
BB_G7G49:C65C66_BB
7
-0.741
1.332
32.223
-4.546
-0.099
3.341
36.256
B
B
49
50
-4.096
B
B
65
64
3.186
-2.546
-0.718
-1.889
BB_G49C50:G64C65_BB
8
-2.000
3.218
36.116
-2.679
0.873
2.724
32.416
B
B
50
51
13.670
B
B
64
63
3.032
7.544
0.298
-1.064
BB_C50U51:A63G64_BB
9
4.162
-7.542
31.279
-3.096
0.122
2.628
28.522
B
B
51
52
20.967
B
B
63
62
3.389
10.107
0.415
-1.633
BB_U51G52:C62A63_BB
10
1.835
-3.807
26.644
-5.510
-0.443
3.409
35.261
B
B
52
53
9.376
B
B
62
61
3.606
5.636
0.833
-1.524
BB_G52G53:C61C62_BB
11
5.330
-8.868
34.423
-3.423
-0.516
3.101
91.649
B
B
53
54
0.817
B
B
61
58
3.229
1.172
-3.209
-2.076
BB_G535MU54:1MA58C61_BB
12
3.890
-2.713
91.579
-1.469
2.310
3.324
33.640
B
B
54
55
-0.073
B
B
58
18
3.122
-0.042
1.188
-0.254
BB_5MU54PSU55:G181MA58_BB
13
9.057
-15.834
32.432
-0.432
-0.567
2.387
30.994
E
F
B
B
47
47
18.425
B
B
47
46
3.371
9.613
-0.574
-2.056
BB_G47EC47F:G46C47_BB
14
6.674
-12.793
28.750
-5.543
2.251
2.625
29.392
F
G
B
B
47
47
2.285
B
B
46
45
2.690
1.159
0.004
-1.528
BB_C47FC47G:G45G46_BB
15
1.686
-3.326
29.322
-3.215
0.287
4.192
76.130
G
H
B
B
47
47
17.077
B
B
B
45
20
4.461
20.815
-3.484
-2.200
BB_C47GU47H:A20BG45_BB
16
-10.286
8.439
73.020
-2.624
2.411
1.668
26.089
H
I
B
B
47
47
34.474
B
B
B
20
21
3.719
14.621
-2.262
-1.906
BB_U47HU47I:A21A20B_BB
17
3.809
-8.980
21.331
-7.855
5.957
1.751
49.640
I
B
B
47
48
13.991
B
B
21
15
2.645
11.565
-4.286
0.500
BB_U47IC48:G15A21_BB
18
10.824
-13.094
47.198
0.007
5.656
2.565
48.597
B
B
8
22
-4.975
B
B
14
13
2.720
-4.054
1.053
-2.118
BB_U8A22:G13A14_BB
19
-11.786
14.464
47.065
-2.317
-2.024
3.302
60.583
B
B
22
23
-0.087
B
B
13
12
3.215
-0.088
-0.950
-0.990
BB_A22G23:C12G13_BB
20
-7.371
7.321
60.175
-0.977
0.584
3.306
32.395
B
B
23
24
3.434
B
B
12
11
3.371
1.912
-0.496
-1.573
BB_G23G24:C11C12_BB
21
-3.023
5.429
32.202
-3.164
0.343
2.946
35.327
B
B
24
25
12.254
B
B
11
10
3.380
7.379
0.239
-1.837
BB_G24G25:C10C11_BB
22
2.389
-3.966
34.491
-4.096
-0.048
2.703
48.456
B
B
25
26
3.815
B
B
10
44
3.084
3.121
2.900
0.134
BB_G25G26:U44C10_BB
23
-6.382
7.800
47.963
-0.052
-3.972
2.723
41.190
B
B
26
27
3.536
B
B
44
43
2.862
2.477
0.387
-0.743
BB_G26A27:U43U44_BB
24
-6.492
9.268
40.625
-1.286
-1.154
3.013
37.906
B
B
27
28
8.973
B
B
43
42
3.286
5.790
0.108
-1.508
BB_A27C28:G42U43_BB
25
5.204
-8.064
37.127
-3.042
0.483
2.100
31.690
B
B
28
29
20.886
B
B
42
41
2.997
11.077
-0.270
-2.038
BB_C28G29:C41G42_BB
26
-7.090
13.369
28.896
-5.400
-0.573
2.975
38.517
B
B
29
30
26.698
B
B
41
40
4.217
16.454
0.738
-1.744
BB_G29G30:C40C41_BB
27
16.793
-27.247
30.727
-5.164
1.453
2.479
33.998
B
B
30
31
14.816
B
B
40
39
2.786
8.450
-0.495
-1.011
BB_G30U31:A39C40_BB
28
-10.063
17.645
31.425
-2.861
-0.502
4.752
76.279
B
B
31
32
13.326
B
B
39
37
5.261
16.343
-0.304
-2.317
BB_U31C32:A37A39_BB
29
-8.392
6.843
74.363
-2.626
-0.140
chem_comp
pdbx_database_status
struct_conn
repository
Initial release
Source and taxonomy
Version format compliance
Atomic model
Derived calculations
Non-polymer description
Other
Structure summary
Data collection
Structure summary
Data collection
Derived calculations
Other
1
0
2002-10-27
1
1
2014-02-05
1
2
2015-08-19
1
3
2018-10-17
1
4
2019-10-30
_chem_comp.mon_nstd_flag
_chem_comp.pdbx_synonyms
_chem_comp.type
_pdbx_database_status.status_code_sf
TYROSYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH TYROSINOL
PDBE
Y
PDBE
2002-08-28
REL
REL
ATP
ADENOSINE-5'-TRIPHOSPHATE
TYE
4-[(2S)-2-amino-3-hydroxypropyl]phenol
HOH
water
274
THERMUS THERMOPHILUS
sample
CATALYTIC ACTIVITY: ATP + L-TYROSINE + TRNA(TYR) = AMP +
DIPHOSPHATE + L-TYROSYL-TRNA(TYR).
ALTHOUGH THIS PROTEIN IS A CLASS I AMINOACYL-TRNA
SYNTHETASE, IT DISPLAYS A CLASS II MODE OF TRNA RECOGNITION.
ATP
1433
3
ATP
ATP
1433
A
TYE
1434
4
TYE
TYE
1434
A
HOH
2001
5
HOH
HOH
2001
A
HOH
2002
5
HOH
HOH
2002
A
HOH
2003
5
HOH
HOH
2003
A
HOH
2004
5
HOH
HOH
2004
A
HOH
2005
5
HOH
HOH
2005
A
HOH
2006
5
HOH
HOH
2006
A
HOH
2007
5
HOH
HOH
2007
A
HOH
2008
5
HOH
HOH
2008
A
HOH
2001
5
HOH
HOH
2001
B
HOH
2002
5
HOH
HOH
2002
B
HOH
2003
5
HOH
HOH
2003
B
HOH
2004
5
HOH
HOH
2004
B
HOH
2005
5
HOH
HOH
2005
B
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
HIS
6
n
6
HIS
6
A
THR
7
n
7
THR
7
A
PRO
8
n
8
PRO
8
A
GLU
9
n
9
GLU
9
A
GLU
10
n
10
GLU
10
A
ALA
11
n
11
ALA
11
A
LEU
12
n
12
LEU
12
A
ALA
13
n
13
ALA
13
A
LEU
14
n
14
LEU
14
A
LEU
15
n
15
LEU
15
A
LYS
16
n
16
LYS
16
A
ARG
17
n
17
ARG
17
A
GLY
18
n
18
GLY
18
A
ALA
19
n
19
ALA
19
A
GLU
20
n
20
GLU
20
A
GLU
21
n
21
GLU
21
A
ILE
22
n
22
ILE
22
A
VAL
23
n
23
VAL
23
A
PRO
24
n
24
PRO
24
A
GLU
25
n
25
GLU
25
A
GLU
26
n
26
GLU
26
A
GLU
27
n
27
GLU
27
A
LEU
28
n
28
LEU
28
A
LEU
29
n
29
LEU
29
A
ALA
30
n
30
ALA
30
A
LYS
31
n
31
LYS
31
A
LEU
32
n
32
LEU
32
A
LYS
33
n
33
LYS
33
A
GLU
34
n
34
GLU
34
A
GLY
35
n
35
GLY
35
A
ARG
36
n
36
ARG
36
A
PRO
37
n
37
PRO
37
A
LEU
38
n
38
LEU
38
A
THR
39
n
39
THR
39
A
VAL
40
n
40
VAL
40
A
LYS
41
n
41
LYS
41
A
LEU
42
n
42
LEU
42
A
GLY
43
n
43
GLY
43
A
ALA
44
n
44
ALA
44
A
ASP
45
n
45
ASP
45
A
PRO
46
n
46
PRO
46
A
THR
47
n
47
THR
47
A
ARG
48
n
48
ARG
48
A
PRO
49
n
49
PRO
49
A
ASP
50
n
50
ASP
50
A
LEU
51
n
51
LEU
51
A
HIS
52
n
52
HIS
52
A
LEU
53
n
53
LEU
53
A
GLY
54
n
54
GLY
54
A
HIS
55
n
55
HIS
55
A
ALA
56
n
56
ALA
56
A
VAL
57
n
57
VAL
57
A
VAL
58
n
58
VAL
58
A
LEU
59
n
59
LEU
59
A
ARG
60
n
60
ARG
60
A
LYS
61
n
61
LYS
61
A
MET
62
n
62
MET
62
A
ARG
63
n
63
ARG
63
A
GLN
64
n
64
GLN
64
A
PHE
65
n
65
PHE
65
A
GLN
66
n
66
GLN
66
A
GLU
67
n
67
GLU
67
A
LEU
68
n
68
LEU
68
A
GLY
69
n
69
GLY
69
A
HIS
70
n
70
HIS
70
A
LYS
71
n
71
LYS
71
A
VAL
72
n
72
VAL
72
A
VAL
73
n
73
VAL
73
A
LEU
74
n
74
LEU
74
A
ILE
75
n
75
ILE
75
A
ILE
76
n
76
ILE
76
A
GLY
77
n
77
GLY
77
A
ASP
78
n
78
ASP
78
A
PHE
79
n
79
PHE
79
A
THR
80
n
80
THR
80
A
GLY
81
n
81
GLY
81
A
MET
82
n
82
MET
82
A
ILE
83
n
83
ILE
83
A
GLY
84
n
84
GLY
84
A
ASP
85
n
85
ASP
85
A
PRO
86
n
86
PRO
86
A
SER
87
n
87
SER
87
A
GLY
88
n
88
GLY
88
A
ARG
89
n
89
ARG
89
A
SER
90
n
90
SER
90
A
LYS
91
n
91
LYS
91
A
THR
92
n
92
THR
92
A
ARG
93
n
93
ARG
93
A
PRO
94
n
94
PRO
94
A
PRO
95
n
95
PRO
95
A
LEU
96
n
96
LEU
96
A
THR
97
n
97
THR
97
A
LEU
98
n
98
LEU
98
A
GLU
99
n
99
GLU
99
A
GLU
100
n
100
GLU
100
A
THR
101
n
101
THR
101
A
ARG
102
n
102
ARG
102
A
GLU
103
n
103
GLU
103
A
ASN
104
n
104
ASN
104
A
ALA
105
n
105
ALA
105
A
LYS
106
n
106
LYS
106
A
THR
107
n
107
THR
107
A
TYR
108
n
108
TYR
108
A
VAL
109
n
109
VAL
109
A
ALA
110
n
110
ALA
110
A
GLN
111
n
111
GLN
111
A
ALA
112
n
112
ALA
112
A
GLY
113
n
113
GLY
113
A
LYS
114
n
114
LYS
114
A
ILE
115
n
115
ILE
115
A
LEU
116
n
116
LEU
116
A
ARG
117
n
117
ARG
117
A
GLN
118
n
118
GLN
118
A
GLU
119
n
119
GLU
119
A
PRO
120
n
120
PRO
120
A
HIS
121
n
121
HIS
121
A
LEU
122
n
122
LEU
122
A
PHE
123
n
123
PHE
123
A
GLU
124
n
124
GLU
124
A
LEU
125
n
125
LEU
125
A
ARG
126
n
126
ARG
126
A
TYR
127
n
127
TYR
127
A
ASN
128
n
128
ASN
128
A
SER
129
n
129
SER
129
A
GLU
130
n
130
GLU
130
A
TRP
131
n
131
TRP
131
A
LEU
132
n
132
LEU
132
A
GLU
133
n
133
GLU
133
A
GLY
134
n
134
GLY
134
A
LEU
135
n
135
LEU
135
A
THR
136
n
136
THR
136
A
PHE
137
n
137
PHE
137
A
LYS
138
n
138
LYS
138
A
GLU
139
n
139
GLU
139
A
VAL
140
n
140
VAL
140
A
VAL
141
n
141
VAL
141
A
ARG
142
n
142
ARG
142
A
LEU
143
n
143
LEU
143
A
THR
144
n
144
THR
144
A
SER
145
n
145
SER
145
A
LEU
146
n
146
LEU
146
A
MET
147
n
147
MET
147
A
THR
148
n
148
THR
148
A
VAL
149
n
149
VAL
149
A
ALA
150
n
150
ALA
150
A
GLN
151
n
151
GLN
151
A
MET
152
n
152
MET
152
A
LEU
153
n
153
LEU
153
A
GLU
154
n
154
GLU
154
A
ARG
155
n
155
ARG
155
A
GLU
156
n
156
GLU
156
A
ASP
157
n
157
ASP
157
A
PHE
158
n
158
PHE
158
A
LYS
159
n
159
LYS
159
A
LYS
160
n
160
LYS
160
A
ARG
161
n
161
ARG
161
A
TYR
162
n
162
TYR
162
A
GLU
163
n
163
GLU
163
A
ALA
164
n
164
ALA
164
A
GLY
165
n
165
GLY
165
A
ILE
166
n
166
ILE
166
A
PRO
167
n
167
PRO
167
A
ILE
168
n
168
ILE
168
A
SER
169
n
169
SER
169
A
LEU
170
n
170
LEU
170
A
HIS
171
n
171
HIS
171
A
GLU
172
n
172
GLU
172
A
LEU
173
n
173
LEU
173
A
LEU
174
n
174
LEU
174
A
TYR
175
n
175
TYR
175
A
PRO
176
n
176
PRO
176
A
PHE
177
n
177
PHE
177
A
ALA
178
n
178
ALA
178
A
GLN
179
n
179
GLN
179
A
ALA
180
n
180
ALA
180
A
TYR
181
n
181
TYR
181
A
ASP
182
n
182
ASP
182
A
SER
183
n
183
SER
183
A
VAL
184
n
184
VAL
184
A
ALA
185
n
185
ALA
185
A
ILE
186
n
186
ILE
186
A
ARG
187
n
187
ARG
187
A
ALA
188
n
188
ALA
188
A
ASP
189
n
189
ASP
189
A
VAL
190
n
190
VAL
190
A
GLU
191
n
191
GLU
191
A
MET
192
n
192
MET
192
A
GLY
193
n
193
GLY
193
A
GLY
194
n
194
GLY
194
A
THR
195
n
195
THR
195
A
ASP
196
n
196
ASP
196
A
GLN
197
n
197
GLN
197
A
ARG
198
n
198
ARG
198
A
PHE
199
n
199
PHE
199
A
ASN
200
n
200
ASN
200
A
LEU
201
n
201
LEU
201
A
LEU
202
n
202
LEU
202
A
VAL
203
n
203
VAL
203
A
GLY
204
n
204
GLY
204
A
ARG
205
n
205
ARG
205
A
GLU
206
n
206
GLU
206
A
VAL
207
n
207
VAL
207
A
GLN
208
n
208
GLN
208
A
ARG
209
n
209
ARG
209
A
ALA
210
n
210
ALA
210
A
TYR
211
n
211
TYR
211
A
GLY
212
n
212
GLY
212
A
GLN
213
n
213
GLN
213
A
SER
214
n
214
SER
214
A
PRO
215
n
215
PRO
215
A
GLN
216
n
216
GLN
216
A
VAL
217
n
217
VAL
217
A
CYS
218
n
218
CYS
218
A
PHE
219
n
219
PHE
219
A
LEU
220
n
220
LEU
220
A
MET
221
n
221
MET
221
A
PRO
222
n
222
PRO
222
A
LEU
223
n
223
LEU
223
A
LEU
224
n
224
LEU
224
A
VAL
225
n
225
VAL
225
A
GLY
226
n
226
GLY
226
A
LEU
227
n
227
LEU
227
A
ASP
228
n
228
ASP
228
A
GLY
229
n
229
GLY
229
A
ARG
230
n
230
ARG
230
A
GLU
231
n
231
GLU
231
A
LYS
232
n
232
LYS
232
A
MET
233
n
233
MET
233
A
SER
234
n
234
SER
234
A
LYS
235
n
235
LYS
235
A
SER
236
n
236
SER
236
A
LEU
237
n
237
LEU
237
A
ASP
238
n
238
ASP
238
A
ASN
239
n
239
ASN
239
A
TYR
240
n
240
TYR
240
A
ILE
241
n
241
ILE
241
A
GLY
242
n
242
GLY
242
A
LEU
243
n
243
LEU
243
A
THR
244
n
244
THR
244
A
GLU
245
n
245
GLU
245
A
PRO
246
n
246
PRO
246
A
PRO
247
n
247
PRO
247
A
GLU
248
n
248
GLU
248
A
ALA
249
n
249
ALA
249
A
MET
250
n
250
MET
250
A
PHE
251
n
251
PHE
251
A
LYS
252
n
252
LYS
252
A
LYS
253
n
253
LYS
253
A
LEU
254
n
254
LEU
254
A
MET
255
n
255
MET
255
A
ARG
256
n
256
ARG
256
A
VAL
257
n
257
VAL
257
A
PRO
258
n
258
PRO
258
A
ASP
259
n
259
ASP
259
A
PRO
260
n
260
PRO
260
A
LEU
261
n
261
LEU
261
A
LEU
262
n
262
LEU
262
A
PRO
263
n
263
PRO
263
A
SER
264
n
264
SER
264
A
TYR
265
n
265
TYR
265
A
PHE
266
n
266
PHE
266
A
ARG
267
n
267
ARG
267
A
LEU
268
n
268
LEU
268
A
LEU
269
n
269
LEU
269
A
THR
270
n
270
THR
270
A
ASP
271
n
271
ASP
271
A
LEU
272
n
272
LEU
272
A
GLU
273
n
273
GLU
273
A
GLU
274
n
274
GLU
274
A
GLU
275
n
275
GLU
275
A
GLU
276
n
276
GLU
276
A
ILE
277
n
277
ILE
277
A
GLU
278
n
278
GLU
278
A
ALA
279
n
279
ALA
279
A
LEU
280
n
280
LEU
280
A
LEU
281
n
281
LEU
281
A
LYS
282
n
282
LYS
282
A
ALA
283
n
283
ALA
283
A
GLY
284
n
284
GLY
284
A
PRO
285
n
285
PRO
285
A
VAL
286
n
286
VAL
286
A
PRO
287
n
287
PRO
287
A
ALA
288
n
288
ALA
288
A
HIS
289
n
289
HIS
289
A
ARG
290
n
290
ARG
290
A
VAL
291
n
291
VAL
291
A
LEU
292
n
292
LEU
292
A
ALA
293
n
293
ALA
293
A
ARG
294
n
294
ARG
294
A
LEU
295
n
295
LEU
295
A
LEU
296
n
296
LEU
296
A
THR
297
n
297
THR
297
A
ALA
298
n
298
ALA
298
A
ALA
299
n
299
ALA
299
A
TYR
300
n
300
TYR
300
A
ALA
301
n
301
ALA
301
A
LEU
302
n
302
LEU
302
A
PRO
303
n
303
PRO
303
A
GLN
304
n
304
GLN
304
A
ILE
305
n
305
ILE
305
A
PRO
306
n
306
PRO
306
A
PRO
307
n
307
PRO
307
A
ARG
308
n
308
ARG
308
A
ILE
309
n
309
ILE
309
A
ASP
310
n
310
ASP
310
A
ARG
311
n
311
ARG
311
A
ALA
312
n
312
ALA
312
A
PHE
313
n
313
PHE
313
A
TYR
314
n
314
TYR
314
A
GLU
315
n
315
GLU
315
A
SER
316
n
316
SER
316
A
LEU
317
n
317
LEU
317
A
GLY
318
n
318
GLY
318
A
TYR
319
n
319
TYR
319
A
ALA
320
n
320
ALA
320
A
TRP
321
n
321
TRP
321
A
GLU
322
n
322
GLU
322
A
ALA
323
n
323
ALA
323
A
PHE
324
n
324
PHE
324
A
GLY
325
n
325
GLY
325
A
ARG
326
n
326
ARG
326
A
ASP
327
n
327
ASP
327
A
LYS
328
n
328
LYS
328
A
GLU
329
n
329
GLU
329
A
ALA
330
n
330
ALA
330
A
GLY
331
n
331
GLY
331
A
PRO
332
n
332
PRO
332
A
GLU
333
n
333
GLU
333
A
GLU
334
n
334
GLU
334
A
VAL
335
n
335
VAL
335
A
ARG
336
n
336
ARG
336
A
ARG
337
n
337
ARG
337
A
ALA
338
n
338
ALA
338
A
GLU
339
n
339
GLU
339
A
ALA
340
n
340
ALA
340
A
ARG
341
n
341
ARG
341
A
TYR
342
n
342
TYR
342
A
ASP
343
n
343
ASP
343
A
GLU
344
n
344
GLU
344
A
VAL
345
n
345
VAL
345
A
ALA
346
n
346
ALA
346
A
LYS
347
n
347
LYS
347
A
GLY
348
n
348
GLY
348
A
GLY
349
n
349
GLY
349
A
ILE
350
n
350
ILE
350
A
PRO
351
n
351
PRO
351
A
GLU
352
n
352
GLU
352
A
GLU
353
n
353
GLU
353
A
ILE
354
n
354
ILE
354
A
PRO
355
n
355
PRO
355
A
GLU
356
n
356
GLU
356
A
VAL
357
n
357
VAL
357
A
THR
358
n
358
THR
358
A
ILE
359
n
359
ILE
359
A
PRO
360
n
360
PRO
360
A
ALA
361
n
361
ALA
361
A
SER
362
n
362
SER
362
A
GLU
363
n
363
GLU
363
A
LEU
364
n
364
LEU
364
A
LYS
365
n
365
LYS
365
A
GLU
366
n
366
GLU
366
A
GLY
367
n
367
GLY
367
A
ARG
368
n
368
ARG
368
A
ILE
369
n
369
ILE
369
A
TRP
370
n
370
TRP
370
A
VAL
371
n
371
VAL
371
A
ALA
372
n
372
ALA
372
A
ARG
373
n
373
ARG
373
A
LEU
374
n
374
LEU
374
A
PHE
375
n
375
PHE
375
A
THR
376
n
376
THR
376
A
LEU
377
n
377
LEU
377
A
ALA
378
n
378
ALA
378
A
GLY
379
n
379
GLY
379
A
LEU
380
n
380
LEU
380
A
THR
381
n
381
THR
381
A
PRO
382
n
382
PRO
382
A
SER
383
n
383
SER
383
A
ASN
384
n
384
ASN
384
A
ALA
385
n
385
ALA
385
A
GLU
386
n
386
GLU
386
A
ALA
387
n
387
ALA
387
A
ARG
388
n
388
ARG
388
A
ARG
389
n
389
ARG
389
A
LEU
390
n
390
LEU
390
A
ILE
391
n
391
ILE
391
A
GLN
392
n
392
GLN
392
A
ASN
393
n
393
ASN
393
A
ARG
394
n
394
ARG
394
A
GLY
395
n
395
GLY
395
A
LEU
396
n
396
LEU
396
A
ARG
397
n
397
ARG
397
A
LEU
398
n
398
LEU
398
A
ASP
399
n
399
ASP
399
A
GLY
400
n
400
GLY
400
A
GLU
401
n
401
GLU
401
A
VAL
402
n
402
VAL
402
A
LEU
403
n
403
LEU
403
A
THR
404
n
404
THR
404
A
ASP
405
n
405
ASP
405
A
PRO
406
n
406
PRO
406
A
MET
407
n
407
MET
407
A
LEU
408
n
408
LEU
408
A
GLN
409
n
409
GLN
409
A
VAL
410
n
410
VAL
410
A
ASP
411
n
411
ASP
411
A
LEU
412
n
412
LEU
412
A
SER
413
n
413
SER
413
A
ARG
414
n
414
ARG
414
A
PRO
415
n
415
PRO
415
A
ARG
416
n
416
ARG
416
A
ILE
417
n
417
ILE
417
A
LEU
418
n
418
LEU
418
A
GLN
419
n
419
GLN
419
A
ARG
420
n
420
ARG
420
A
GLY
421
n
421
GLY
421
A
LYS
422
n
422
LYS
422
A
ASP
423
n
423
ASP
423
A
ARG
424
n
424
ARG
424
A
PHE
425
n
425
PHE
425
A
VAL
426
n
426
VAL
426
A
ARG
427
n
427
ARG
427
A
VAL
428
n
428
VAL
428
A
ARG
429
n
429
ARG
429
A
LEU
430
n
430
LEU
430
A
SER
431
n
431
SER
431
A
ASP
432
n
432
ASP
432
A
G
1
n
1
G
1
B
G
2
n
2
G
2
B
G
3
n
3
G
3
B
C
4
n
4
C
4
B
A
5
n
5
A
5
B
G
6
n
6
G
6
B
G
7
n
7
G
7
B
U
8
n
8
U
8
B
U
9
n
9
U
9
B
C
10
n
10
C
10
B
C
11
n
11
C
11
B
C
12
n
12
C
12
B
G
13
n
13
G
13
B
A
14
n
14
A
14
B
G
15
n
15
G
15
B
C
16
n
16
C
16
B
G
18
n
17
G
18
B
G
19
n
18
G
19
B
C
20
n
19
C
20
B
C
20
n
20
A
C
20
B
A
20
n
21
B
A
20
B
A
21
n
22
A
21
B
A
22
n
23
A
22
B
G
23
n
24
G
23
B
G
24
n
25
G
24
B
G
25
n
26
G
25
B
G
26
n
27
G
26
B
A
27
n
28
A
27
B
C
28
n
29
C
28
B
G
29
n
30
G
29
B
G
30
n
31
G
30
B
U
31
n
32
U
31
B
C
32
n
33
C
32
B
U
33
n
34
U
33
B
G
34
n
35
G
34
B
PSU
35
n
36
PSU
35
B
A
36
n
37
A
36
B
A
37
n
38
A
37
B
A
38
n
39
A
38
B
A
39
n
40
A
39
B
C
40
n
41
C
40
B
C
41
n
42
C
41
B
G
42
n
43
G
42
B
U
43
n
44
U
43
B
U
44
n
45
U
44
B
G
45
n
46
G
45
B
G
46
n
47
G
46
B
C
47
n
48
C
47
B
G
47
n
49
A
G
47
B
U
47
n
50
B
U
47
B
A
47
n
51
C
A
47
B
U
47
n
52
D
U
47
B
G
47
n
53
E
G
47
B
C
47
n
54
F
C
47
B
C
47
n
55
G
C
47
B
U
47
n
56
H
U
47
B
U
47
n
57
I
U
47
B
C
48
n
58
C
48
B
G
49
n
59
G
49
B
C
50
n
60
C
50
B
U
51
n
61
U
51
B
G
52
n
62
G
52
B
G
53
n
63
G
53
B
5MU
54
n
64
5MU
54
B
PSU
55
n
65
PSU
55
B
C
56
n
66
C
56
B
G
57
n
67
G
57
B
1MA
58
n
68
1MA
58
B
A
59
n
69
A
59
B
U
60
n
70
U
60
B
C
61
n
71
C
61
B
C
62
n
72
C
62
B
A
63
n
73
A
63
B
G
64
n
74
G
64
B
C
65
n
75
C
65
B
C
66
n
76
C
66
B
C
67
n
77
C
67
B
U
68
n
78
U
68
B
G
69
n
79
G
69
B
C
70
n
80
C
70
B
C
71
n
81
C
71
B
C
72
n
82
C
72
B
A
73
n
83
A
73
B
C
74
n
84
C
74
B
n
85
75
B
n
86
76
B
author_and_software_defined_assembly
PISA
4
tetrameric
14440
-110.8
55830
B
PSU
35
PSEUDOURIDINE-5'-MONOPHOSPHATE
B
PSU
36
U
B
5MU
54
5-METHYLURIDINE 5'-MONOPHOSPHATE
B
5MU
64
U
B
PSU
55
PSEUDOURIDINE-5'-MONOPHOSPHATE
B
PSU
65
U
B
1MA
58
B
1MA
68
A
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_646
y+1,x-1,-z+1
crystal symmetry operation
194.2875000000
-112.1719404252
109.4510000000
A
N
VAL
23
A
N
VAL
23
A
O
CYS
218
A
O
CYS
218
A
N
PHE
219
A
N
PHE
219
A
O
GLU
191
A
O
GLU
191
A
N
VAL
190
A
N
VAL
190
A
O
THR
39
A
O
THR
39
A
N
VAL
40
A
N
VAL
40
A
O
LYS
71
A
O
LYS
71
A
N
LEU
74
A
N
LEU
74
A
O
GLU
124
A
O
GLU
124
A
N
VAL
357
A
N
VAL
357
A
O
ARG
427
A
O
ARG
427
A
N
VAL
428
A
N
VAL
428
A
O
ARG
416
A
O
ARG
416
A
N
GLN
419
A
N
GLN
419
A
O
ARG
397
A
O
ARG
397
A
N
LEU
398
A
N
LEU
398
A
O
GLU
401
A
O
GLU
401
A
N
ILE
369
A
N
ILE
369
A
O
VAL
410
A
O
VAL
410
1
B
N1
C
16
B
N1
C
16
1
Y
1
B
C2
C
16
B
C2
C
16
1
Y
1
B
O2
C
16
B
O2
C
16
1
Y
1
B
N3
C
16
B
N3
C
16
1
Y
1
B
C4
C
16
B
C4
C
16
1
Y
1
B
N4
C
16
B
N4
C
16
1
Y
1
B
C5
C
16
B
C5
C
16
1
Y
1
B
C6
C
16
B
C6
C
16
1
Y
D
1
B
N1
U
47
B
N1
U
52
1
Y
D
1
B
C2
U
47
B
C2
U
52
1
Y
D
1
B
O2
U
47
B
O2
U
52
1
Y
D
1
B
N3
U
47
B
N3
U
52
1
Y
D
1
B
C4
U
47
B
C4
U
52
1
Y
D
1
B
O4
U
47
B
O4
U
52
1
Y
D
1
B
C5
U
47
B
C5
U
52
1
Y
D
1
B
C6
U
47
B
C6
U
52
1
Y
1
B
C5'
C
74
B
C5'
C
84
1
Y
1
B
C4'
C
74
B
C4'
C
84
1
Y
1
B
O4'
C
74
B
O4'
C
84
1
Y
1
B
C3'
C
74
B
C3'
C
84
1
Y
1
B
O3'
C
74
B
O3'
C
84
1
Y
1
B
C2'
C
74
B
C2'
C
84
1
Y
1
B
O2'
C
74
B
O2'
C
84
1
Y
1
B
C1'
C
74
B
C1'
C
84
1
Y
1
B
N1
C
74
B
N1
C
84
1
Y
1
B
C2
C
74
B
C2
C
84
1
Y
1
B
O2
C
74
B
O2
C
84
1
Y
1
B
N3
C
74
B
N3
C
84
1
Y
1
B
C4
C
74
B
C4
C
84
1
Y
1
B
N4
C
74
B
N4
C
84
1
Y
1
B
C5
C
74
B
C5
C
84
1
Y
1
B
C6
C
74
B
C6
C
84
1
Y
1
A
MET
1
A
MET
1
1
Y
1
A
ALA
2
A
ALA
2
1
Y
1
A
GLY
3
A
GLY
3
1
Y
1
A
THR
4
A
THR
4
1
Y
1
A
GLY
5
A
GLY
5
1
Y
1
B
C
75
B
C
85
1
Y
1
B
A
76
B
A
86
1
Y
1
A
TYR
300
0.063
SIDE CHAIN
1
B
B
P
OP3
G
G
1
1
-0.089
0.012
1.607
1.518
N
1
A
PRO
8
-43.43
-72.03
1
A
GLU
9
-37.32
-39.89
1
A
GLU
20
-60.44
-71.26
1
A
PRO
46
-64.31
63.98
1
A
ASP
50
67.98
138.11
1
A
ARG
89
-38.95
137.32
1
A
PRO
120
-31.78
-31.77
1
A
ALA
164
-65.20
0.27
1
A
PRO
167
-38.45
133.09
1
A
ARG
187
39.65
53.94
1
A
ARG
230
-102.76
-68.32
1
A
ASN
239
-152.99
23.09
1
A
PRO
260
-55.10
-4.01
1
A
PRO
285
-60.71
-70.83
1
A
GLU
333
-67.79
23.11
1
A
GLU
334
-134.46
-34.55
1
A
GLU
352
-53.84
-71.75
1
A
ALA
361
-39.75
-38.43
1
A
ARG
368
-119.26
-161.31
1
A
THR
404
-150.28
-7.61
1
A
PRO
415
-46.04
157.61
1
A
ASP
423
-140.37
55.35
PROTEIN_REP.PARAM
PROTEIN.TOP
DNA-RNA.PARAM
DNA-RNA.TOP
WATER_REP.PARAM
WATER.TOP
ION.PARAM
ION.TOP
77.3
10.06
22.22
0.00
10.06
0.00
-20.13
BASES OF TRNA NUCLEOTIDES 16,20,474, 74 OMITTED: NOT VISIBLE IN ELECTRON DENSITY. UNIDENTIFIED MODIFIED BASES IN THE TRNA(E.G ADE-37 IN CHAIN B) HAVE NOT BEEN MODELED.
0.269
0.008
0.219
0.219
2.90
22.99
1149
22644
5.1
94.9
RANDOM
1216869.71
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
T. THERMOPHILUS TYROSYL-TRNA SYNTHETASE PREVIOUSLY DETERMINED BY SIRAS BY SAME AUTHORS
FLAT MODEL
46.8415
0.337167
0.47
0.38
5.00
0.71
0.63
2.90
22.99
13
5221
43
1762
3403
0.007
1.3
26.9
1.26
1.21
1.50
2.09
2.00
5.35
3.00
8.15
4.00
0.391
0.031
0.367
3.08
155
2774
6
5.3
74.7
115.5
2.900
23.000
1H3E
22669
0.07500
1
5.9000
3.400
94.9
0.50900
2.90
2.98
1.500
1
1.80
63.8
refinement
CNS
1.0
data reduction
MOSFLM
data scaling
SCALA
phasing
MOLREP
TYROSYL-TRNA SYNTHETASE (E.C.6.1.1.1)
Tyrosyl-tRNA synthetase from Thermus thermophilus complexed with wild-type tRNAtyr(GUA) and with ATP and tyrosinol
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
THE TETRAMER IS ACTUALLY A DIMER OF CHAIN A,
EACH ASSOCIATED WITH A MOLECULE OF CHAIN B GIVING RISE
TO A TETRAMERIC STATE
A
THR
7
A
THR
7
HELX_P
A
ARG
17
A
ARG
17
1
1
11
A
PRO
24
A
PRO
24
HELX_P
A
GLU
34
A
GLU
34
1
2
11
A
HIS
52
A
HIS
52
HELX_P
A
GLU
67
A
GLU
67
1
3
16
A
PHE
79
A
PHE
79
HELX_P
A
GLY
84
A
GLY
84
1
4
6
A
THR
97
A
THR
97
HELX_P
A
GLY
113
A
GLY
113
1
5
17
A
ASN
128
A
ASN
128
HELX_P
A
GLU
133
A
GLU
133
1
6
6
A
THR
136
A
THR
136
HELX_P
A
THR
144
A
THR
144
1
7
9
A
SER
145
A
SER
145
HELX_P
A
MET
147
A
MET
147
5
8
3
A
THR
148
A
THR
148
HELX_P
A
LEU
153
A
LEU
153
1
9
6
A
ARG
155
A
ARG
155
HELX_P
A
ALA
164
A
ALA
164
1
10
10
A
SER
169
A
SER
169
HELX_P
A
LEU
173
A
LEU
173
5
11
5
A
LEU
174
A
LEU
174
HELX_P
A
ILE
186
A
ILE
186
1
12
13
A
GLN
197
A
GLN
197
HELX_P
A
TYR
211
A
TYR
211
1
13
15
A
PRO
246
A
PRO
246
HELX_P
A
MET
255
A
MET
255
1
14
10
A
PRO
258
A
PRO
258
HELX_P
A
PRO
260
A
PRO
260
5
15
3
A
LEU
261
A
LEU
261
HELX_P
A
THR
270
A
THR
270
1
16
10
A
GLU
273
A
GLU
273
HELX_P
A
GLY
284
A
GLY
284
1
17
12
A
GLY
284
A
GLY
284
HELX_P
A
TYR
300
A
TYR
300
1
18
17
A
ASP
310
A
ASP
310
HELX_P
A
LEU
317
A
LEU
317
1
19
8
A
ALA
320
A
ALA
320
HELX_P
A
PHE
324
A
PHE
324
5
20
5
A
GLU
334
A
GLU
334
HELX_P
A
GLY
348
A
GLY
348
1
21
15
A
PRO
360
A
PRO
360
HELX_P
A
LEU
364
A
LEU
364
5
22
5
A
VAL
371
A
VAL
371
HELX_P
A
ALA
378
A
ALA
378
1
23
8
A
SER
383
A
SER
383
HELX_P
A
ASN
393
A
ASN
393
1
24
11
covale
1.599
both
B
G
34
B
O3'
G
35
1_555
B
PSU
35
B
P
PSU
36
1_555
covale
1.605
both
B
PSU
35
B
O3'
PSU
36
1_555
B
A
36
B
P
A
37
1_555
covale
1.608
both
B
G
53
B
O3'
G
63
1_555
B
5MU
54
B
P
5MU
64
1_555
covale
1.608
both
B
5MU
54
B
O3'
5MU
64
1_555
B
PSU
55
B
P
PSU
65
1_555
covale
1.610
both
B
PSU
55
B
O3'
PSU
65
1_555
B
C
56
B
P
C
66
1_555
covale
1.603
both
B
G
57
B
O3'
G
67
1_555
B
1MA
58
B
P
1MA
68
1_555
covale
1.605
both
B
1MA
58
B
O3'
1MA
68
1_555
B
A
59
B
P
A
69
1_555
hydrog
WATSON-CRICK
B
G
1
B
N1
G
1
1_555
B
C
72
B
N3
C
82
1_555
hydrog
WATSON-CRICK
B
G
1
B
N2
G
1
1_555
B
C
72
B
O2
C
82
1_555
hydrog
WATSON-CRICK
B
G
1
B
O6
G
1
1_555
B
C
72
B
N4
C
82
1_555
hydrog
WATSON-CRICK
B
G
2
B
N1
G
2
1_555
B
C
71
B
N3
C
81
1_555
hydrog
WATSON-CRICK
B
G
2
B
N2
G
2
1_555
B
C
71
B
O2
C
81
1_555
hydrog
WATSON-CRICK
B
G
2
B
O6
G
2
1_555
B
C
71
B
N4
C
81
1_555
hydrog
WATSON-CRICK
B
G
3
B
N1
G
3
1_555
B
C
70
B
N3
C
80
1_555
hydrog
WATSON-CRICK
B
G
3
B
N2
G
3
1_555
B
C
70
B
O2
C
80
1_555
hydrog
WATSON-CRICK
B
G
3
B
O6
G
3
1_555
B
C
70
B
N4
C
80
1_555
hydrog
WATSON-CRICK
B
C
4
B
N3
C
4
1_555
B
G
69
B
N1
G
79
1_555
hydrog
WATSON-CRICK
B
C
4
B
N4
C
4
1_555
B
G
69
B
O6
G
79
1_555
hydrog
WATSON-CRICK
B
C
4
B
O2
C
4
1_555
B
G
69
B
N2
G
79
1_555
hydrog
WATSON-CRICK
B
A
5
B
N1
A
5
1_555
B
U
68
B
N3
U
78
1_555
hydrog
WATSON-CRICK
B
A
5
B
N6
A
5
1_555
B
U
68
B
O4
U
78
1_555
hydrog
WATSON-CRICK
B
G
6
B
N1
G
6
1_555
B
C
67
B
N3
C
77
1_555
hydrog
WATSON-CRICK
B
G
6
B
N2
G
6
1_555
B
C
67
B
O2
C
77
1_555
hydrog
WATSON-CRICK
B
G
6
B
O6
G
6
1_555
B
C
67
B
N4
C
77
1_555
hydrog
WATSON-CRICK
B
G
7
B
N1
G
7
1_555
B
C
66
B
N3
C
76
1_555
hydrog
WATSON-CRICK
B
G
7
B
N2
G
7
1_555
B
C
66
B
O2
C
76
1_555
hydrog
WATSON-CRICK
B
G
7
B
O6
G
7
1_555
B
C
66
B
N4
C
76
1_555
hydrog
REVERSED HOOGSTEEN
B
U
8
B
N3
U
8
1_555
B
A
14
B
N7
A
14
1_555
hydrog
REVERSED HOOGSTEEN
B
U
8
B
O2
U
8
1_555
B
A
14
B
N6
A
14
1_555
hydrog
U-G MISPAIR
B
U
9
B
O4
U
9
1_555
B
G
13
B
N2
G
13
1_555
hydrog
WATSON-CRICK
B
C
10
B
N3
C
10
1_555
B
G
25
B
N1
G
26
1_555
hydrog
WATSON-CRICK
B
C
10
B
N4
C
10
1_555
B
G
25
B
O6
G
26
1_555
hydrog
WATSON-CRICK
B
C
10
B
O2
C
10
1_555
B
G
25
B
N2
G
26
1_555
hydrog
WATSON-CRICK
B
C
11
B
N3
C
11
1_555
B
G
24
B
N1
G
25
1_555
hydrog
WATSON-CRICK
B
C
11
B
N4
C
11
1_555
B
G
24
B
O6
G
25
1_555
hydrog
WATSON-CRICK
B
C
11
B
O2
C
11
1_555
B
G
24
B
N2
G
25
1_555
hydrog
WATSON-CRICK
B
C
12
B
N3
C
12
1_555
B
G
23
B
N1
G
24
1_555
hydrog
WATSON-CRICK
B
C
12
B
N4
C
12
1_555
B
G
23
B
O6
G
24
1_555
hydrog
WATSON-CRICK
B
C
12
B
O2
C
12
1_555
B
G
23
B
N2
G
24
1_555
hydrog
TYPE_11_PAIR
B
G
13
B
N2
G
13
1_555
B
A
22
B
N7
A
23
1_555
hydrog
TYPE_11_PAIR
B
G
13
B
N3
G
13
1_555
B
A
22
B
N6
A
23
1_555
hydrog
A-A MISPAIR
B
A
14
B
N6
A
14
1_555
B
A
21
B
N3
A
22
1_555
hydrog
G-C PAIR
A
B
G
15
B
N2
G
15
1_555
B
C
20
B
N3
C
20
1_555
hydrog
REVERSED WATSON-CRICK
B
G
15
B
N1
G
15
1_555
B
C
48
B
O2
C
58
1_555
hydrog
REVERSED WATSON-CRICK
B
G
15
B
N2
G
15
1_555
B
C
48
B
N3
C
58
1_555
hydrog
G-PSU MISPAIR
B
G
18
B
N2
G
17
1_555
B
PSU
55
B
O4
PSU
65
1_555
hydrog
WATSON-CRICK
B
G
19
B
N1
G
18
1_555
B
C
56
B
N3
C
66
1_555
hydrog
WATSON-CRICK
B
G
19
B
N2
G
18
1_555
B
C
56
B
O2
C
66
1_555
hydrog
WATSON-CRICK
B
G
19
B
O6
G
18
1_555
B
C
56
B
N4
C
66
1_555
hydrog
REVERSED HOOGSTEEN
B
H
B
A
20
B
N6
A
21
1_555
B
U
47
B
O2
U
56
1_555
hydrog
REVERSED HOOGSTEEN
B
H
B
A
20
B
N7
A
21
1_555
B
U
47
B
N3
U
56
1_555
hydrog
C-C MISPAIR
A
B
C
20
B
O2
C
20
1_555
B
C
48
B
N4
C
58
1_555
hydrog
A-U PAIR
I
B
A
21
B
N6
A
22
1_555
B
U
47
B
O2
U
57
1_555
hydrog
TYPE_28_PAIR
B
G
26
B
N1
G
27
1_555
B
U
44
B
O2
U
45
1_555
hydrog
TYPE_28_PAIR
B
G
26
B
O6
G
27
1_555
B
U
44
B
N3
U
45
1_555
hydrog
WATSON-CRICK
B
A
27
B
N1
A
28
1_555
B
U
43
B
N3
U
44
1_555
hydrog
WATSON-CRICK
B
A
27
B
N6
A
28
1_555
B
U
43
B
O4
U
44
1_555
hydrog
WATSON-CRICK
B
C
28
B
N3
C
29
1_555
B
G
42
B
N1
G
43
1_555
hydrog
WATSON-CRICK
B
C
28
B
N4
C
29
1_555
B
G
42
B
O6
G
43
1_555
hydrog
WATSON-CRICK
B
C
28
B
O2
C
29
1_555
B
G
42
B
N2
G
43
1_555
hydrog
WATSON-CRICK
B
G
29
B
N1
G
30
1_555
B
C
41
B
N3
C
42
1_555
hydrog
WATSON-CRICK
B
G
29
B
N2
G
30
1_555
B
C
41
B
O2
C
42
1_555
hydrog
WATSON-CRICK
B
G
29
B
O6
G
30
1_555
B
C
41
B
N4
C
42
1_555
hydrog
WATSON-CRICK
B
G
30
B
N1
G
31
1_555
B
C
40
B
N3
C
41
1_555
hydrog
WATSON-CRICK
B
G
30
B
N2
G
31
1_555
B
C
40
B
O2
C
41
1_555
hydrog
WATSON-CRICK
B
G
30
B
O6
G
31
1_555
B
C
40
B
N4
C
41
1_555
hydrog
WATSON-CRICK
B
U
31
B
N3
U
32
1_555
B
A
39
B
N1
A
40
1_555
hydrog
WATSON-CRICK
B
U
31
B
O4
U
32
1_555
B
A
39
B
N6
A
40
1_555
hydrog
C-A MISPAIR
B
C
32
B
O2
C
33
1_555
B
A
37
B
N6
A
38
1_555
hydrog
C-A MISPAIR
B
C
32
B
O2
C
33
1_555
B
A
38
B
N6
A
39
1_555
hydrog
WATSON-CRICK
G
B
G
45
B
N1
G
46
1_555
B
C
47
B
N3
C
55
1_555
hydrog
WATSON-CRICK
G
B
G
45
B
N2
G
46
1_555
B
C
47
B
O2
C
55
1_555
hydrog
WATSON-CRICK
G
B
G
45
B
O6
G
46
1_555
B
C
47
B
N4
C
55
1_555
hydrog
WATSON-CRICK
F
B
G
46
B
N1
G
47
1_555
B
C
47
B
N3
C
54
1_555
hydrog
WATSON-CRICK
G
B
G
46
B
N1
G
47
1_555
B
C
47
B
N3
C
55
1_555
hydrog
WATSON-CRICK
F
B
G
46
B
N2
G
47
1_555
B
C
47
B
O2
C
54
1_555
hydrog
WATSON-CRICK
G
B
G
46
B
N2
G
47
1_555
B
C
47
B
O2
C
55
1_555
hydrog
WATSON-CRICK
F
B
G
46
B
O6
G
47
1_555
B
C
47
B
N4
C
54
1_555
hydrog
WATSON-CRICK
G
B
G
46
B
O6
G
47
1_555
B
C
47
B
N4
C
55
1_555
hydrog
WATSON-CRICK
E
B
C
47
B
N3
C
48
1_555
B
G
47
B
N1
G
53
1_555
hydrog
WATSON-CRICK
E
B
C
47
B
N4
C
48
1_555
B
G
47
B
O6
G
53
1_555
hydrog
WATSON-CRICK
E
B
C
47
B
O2
C
48
1_555
B
G
47
B
N2
G
53
1_555
hydrog
WATSON-CRICK
B
G
49
B
N1
G
59
1_555
B
C
65
B
N3
C
75
1_555
hydrog
WATSON-CRICK
B
G
49
B
N2
G
59
1_555
B
C
65
B
O2
C
75
1_555
hydrog
WATSON-CRICK
B
G
49
B
O6
G
59
1_555
B
C
65
B
N4
C
75
1_555
hydrog
WATSON-CRICK
B
C
50
B
N3
C
60
1_555
B
G
64
B
N1
G
74
1_555
hydrog
WATSON-CRICK
B
C
50
B
N4
C
60
1_555
B
G
64
B
O6
G
74
1_555
hydrog
WATSON-CRICK
B
C
50
B
O2
C
60
1_555
B
G
64
B
N2
G
74
1_555
hydrog
WATSON-CRICK
B
U
51
B
N3
U
61
1_555
B
A
63
B
N1
A
73
1_555
hydrog
WATSON-CRICK
B
U
51
B
O4
U
61
1_555
B
A
63
B
N6
A
73
1_555
hydrog
WATSON-CRICK
B
G
52
B
N1
G
62
1_555
B
C
62
B
N3
C
72
1_555
hydrog
WATSON-CRICK
B
G
52
B
N2
G
62
1_555
B
C
62
B
O2
C
72
1_555
hydrog
WATSON-CRICK
B
G
52
B
O6
G
62
1_555
B
C
62
B
N4
C
72
1_555
hydrog
WATSON-CRICK
B
G
53
B
N1
G
63
1_555
B
C
61
B
N3
C
71
1_555
hydrog
WATSON-CRICK
B
G
53
B
N2
G
63
1_555
B
C
61
B
O2
C
71
1_555
hydrog
WATSON-CRICK
B
G
53
B
O6
G
63
1_555
B
C
61
B
N4
C
71
1_555
hydrog
REVERSED HOOGSTEEN
B
5MU
54
B
N3
5MU
64
1_555
B
1MA
58
B
N7
1MA
68
1_555
hydrog
REVERSED HOOGSTEEN
B
5MU
54
B
O2
5MU
64
1_555
B
1MA
58
B
N6
1MA
68
1_555
LIGASE
LIGASE, CLASS I AMINOACYL-TRNA SYNTHETASE: ATP + L-TYROSINE + TRNA(TYR) -> AMP + PPI + L-TYROSYL-TRNA(TYR)
A
VAL
23
A
VAL
23
1
A
PRO
24
A
PRO
24
-1.25
SYY_THETH
UNP
1
P83453
1H3E
PDB
2
1H3E
1
432
1H3E
1
432
P83453
A
1
1
432
1
76
1H3E
1
76
1H3E
B
2
1
86
6
5
2
anti-parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
21
A
GLU
21
A
VAL
23
A
VAL
23
A
VAL
217
A
VAL
217
A
MET
221
A
MET
221
A
VAL
190
A
VAL
190
A
GLY
194
A
GLY
194
A
THR
39
A
THR
39
A
ALA
44
A
ALA
44
A
LYS
71
A
LYS
71
A
ILE
76
A
ILE
76
A
PHE
123
A
PHE
123
A
TYR
127
A
TYR
127
A
GLU
356
A
GLU
356
A
ILE
359
A
ILE
359
A
ARG
424
A
ARG
424
A
LEU
430
A
LEU
430
A
ARG
416
A
ARG
416
A
ARG
420
A
ARG
420
A
LEU
396
A
LEU
396
A
LEU
398
A
LEU
398
A
GLU
401
A
GLU
401
A
VAL
402
A
VAL
402
A
ILE
369
A
ILE
369
A
TRP
370
A
TRP
370
A
GLN
409
A
GLN
409
A
VAL
410
A
VAL
410
BINDING SITE FOR RESIDUE ATP A 1433
Software
19
BINDING SITE FOR RESIDUE TYE A 1434
Software
10
A
GLY
43
A
GLY
43
19
1_555
A
ALA
44
A
ALA
44
19
1_555
A
ASP
45
A
ASP
45
19
1_555
A
HIS
52
A
HIS
52
19
1_555
A
GLY
54
A
GLY
54
19
1_555
A
HIS
55
A
HIS
55
19
1_555
A
VAL
58
A
VAL
58
19
1_555
A
ARG
93
A
ARG
93
19
1_555
A
GLY
193
A
GLY
193
19
1_555
A
GLY
194
A
GLY
194
19
1_555
A
GLN
197
A
GLN
197
19
1_555
A
PRO
222
A
PRO
222
19
1_555
A
LEU
223
A
LEU
223
19
1_555
A
LEU
224
A
LEU
224
19
1_555
A
LYS
232
A
LYS
232
19
1_555
A
MET
233
A
MET
233
19
1_555
A
SER
234
A
SER
234
19
1_555
A
LYS
235
A
LYS
235
19
1_555
A
TYE
1434
D
TYE
19
1_555
A
LYS
41
A
LYS
41
10
1_555
A
GLY
43
A
GLY
43
10
1_555
A
ASP
45
A
ASP
45
10
1_555
A
ASP
85
A
ASP
85
10
1_555
A
TYR
175
A
TYR
175
10
1_555
A
GLN
179
A
GLN
179
10
1_555
A
ASP
182
A
ASP
182
10
1_555
A
GLU
191
A
GLU
191
10
1_555
A
GLN
197
A
GLN
197
10
1_555
A
ATP
1433
C
ATP
10
1_555
152
P 31 2 1