0.020182 0.000000 0.000000 0.000000 0.006700 0.000000 0.000000 0.000000 0.013201 0.00000 0.00000 0.00000 Krapp, S. Mimura, Y. Jefferis, R. Huber, R. Sondermann, P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 49.550 149.250 75.750 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C6 H12 O6 180.156 beta-D-mannopyranose beta-D-mannose; D-mannose; mannose D-saccharide, beta linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C6 H12 O5 164.156 alpha-L-fucopyranose alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose L-saccharide, alpha linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 R C N 75 S C N 76 S C N 77 S C N 78 R C N 79 N C N 80 N O N 81 N O N 82 N O N 83 N O N 84 N O N 85 N O N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N N N 99 R C N 100 N C N 101 N O N 102 N C N 103 N S N 104 N O N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 R C N 113 S C N 114 R C N 115 S C N 116 S C N 117 N C N 118 N O N 119 N O N 120 N O N 121 N O N 122 N O N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N N N 136 S C N 137 N C N 138 N O N 139 N C N 140 N C N 141 N C N 142 N O N 143 N N N 144 N O N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N N N 156 S C N 157 N C N 158 N O N 159 N C N 160 N C N 161 N C N 162 N O N 163 N O N 164 N O N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N N N 175 N C N 176 N C N 177 N O N 178 N O N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N N N 185 S C N 186 N C N 187 N O N 188 N C Y 189 N C Y 190 N N Y 191 N C Y 192 N C Y 193 N N N 194 N O N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N O N 206 N H N 207 N H N 208 N N N 209 S C N 210 N C N 211 N O N 212 S C N 213 N C N 214 N C N 215 N C N 216 N O N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N C N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N N N 253 S C N 254 N C N 255 N O N 256 N C N 257 N C N 258 N C N 259 N C N 260 N N N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N N N 278 S C N 279 N C N 280 N O N 281 N C N 282 N C N 283 N S N 284 N C N 285 N O N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 R C N 298 R C N 299 R C N 300 S C N 301 R C N 302 N C N 303 N C N 304 N C N 305 N N N 306 N O N 307 N O N 308 N O N 309 N O N 310 N O N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N N N 328 S C N 329 N C N 330 N O N 331 N C Y 332 N C Y 333 N C Y 334 N C Y 335 N C Y 336 N C Y 337 N C N 338 N O N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N N N 351 S C N 352 N C N 353 N O N 354 N C N 355 N C N 356 N C N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N N N 368 S C N 369 N C N 370 N O N 371 N C N 372 N O N 373 N O N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N N N 382 S C N 383 N C N 384 N O N 385 R C N 386 N O N 387 N C N 388 N O N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N N N 399 S C N 400 N C N 401 N O N 402 N C Y 403 N C Y 404 N C Y 405 N C Y 406 N N Y 407 N C Y 408 N C Y 409 N C Y 410 N C Y 411 N C N 412 N O N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N N N 426 S C N 427 N C N 428 N O N 429 N C Y 430 N C Y 431 N C Y 432 N C Y 433 N C Y 434 N C Y 435 N C N 436 N O N 437 N O N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N N N 450 S C N 451 N C N 452 N O N 453 N C N 454 N C N 455 N C N 456 N O N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N doub N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N doub N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N doub N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N doub N 183 N sing N 184 N sing N 185 N sing N 186 N sing Y 187 N sing Y 188 N doub Y 189 N doub N 190 N sing Y 191 N sing N 192 N sing Y 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N doub N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N doub N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N doub N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N doub N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N doub N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N doub N 321 N sing N 322 N sing N 323 N sing N 324 N sing Y 325 N doub Y 326 N sing Y 327 N sing N 328 N sing Y 329 N doub N 330 N sing Y 331 N doub N 332 N sing Y 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N doub N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N doub N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N doub N 390 N sing N 391 N sing N 392 N sing N 393 N sing Y 394 N doub Y 395 N sing Y 396 N sing N 397 N sing Y 398 N doub Y 399 N sing Y 400 N sing N 401 N sing Y 402 N sing Y 403 N doub N 404 N sing Y 405 N doub N 406 N sing Y 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N doub N 418 N sing N 419 N sing N 420 N sing N 421 N sing Y 422 N doub Y 423 N sing Y 424 N sing N 425 N sing Y 426 N doub N 427 N sing Y 428 N doub N 429 N sing Y 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N doub N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 325 979 10.1016/S0022-2836(02)01250-0 12527303 Structural Analysis of Human Igg-Fc Glycoforms Reveals a Correlation between Glycosylation and Structural Integrity 2003 10.2210/pdb1h3w/pdb pdb_00001h3w NAG A 2 HAS WRONG CHIRALITY AT ATOM C1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 OS-MIRRORS IMAGE PLATE 2001-09-15 MARRESEARCH GRAPHITE SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 25126.541 IG GAMMA-1 CHAIN C REGION CH2, CH3, RESIDUES 225-447 1 nat polymer 1098.016 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-beta-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 18.015 water 3 nat water IGHG1 no no TCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVS VLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESN GQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK TCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVS VLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESN GQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK M polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n HUMAN sample 9606 HOMO SAPIENS 1 2.79 77 6.50 DIALYSIS AGAINST WATER, pH 6.50 atom_site chem_comp database_PDB_caveat entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_database_status pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen pdbx_unobs_or_zero_occ_atoms pdbx_validate_chiral struct_asym struct_conn struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_unobs_or_zero_occ_atoms repository Initial release Carbohydrate remediation repository Remediation Advisory Atomic model Derived calculations Non-polymer description Other Refinement description Structure summary Version format compliance Structure summary Advisory Atomic model Data collection Derived calculations Other Structure summary Advisory Data collection Database references Refinement description Structure summary 1 0 2003-01-23 1 1 2011-09-21 1 2 2017-03-29 2 0 2020-07-29 2 1 2023-12-13 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.name _chem_comp.type _database_PDB_caveat.text _pdbx_database_status.status_code_sf _pdbx_struct_assembly_gen.asym_id_list _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_seq_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession M NAG 1444 n A NAG 1 M NAG 1446 n A NAG 2 M BMA 1447 n A BMA 3 M BMA 1448 n A BMA 4 M NAG 1449 n A NAG 5 M FUC 1445 n A FUC 6 DManpb b-D-mannopyranose b-D-Manp Man LFucpa a-L-fucopyranose a-L-Fucp Fuc DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc CRYSTAL STRUCTURE OF THE HUMAN IGG1 FC-FRAGMENT,GLYCOFORM (M3N2F)2 CRYSTAL STRUCTURE OF THE HUMAN IGG1 FC-FRAGMENT, GLYCOFORM (G2F)2,SG P212121 CRYSTAL STRUCTURE OF THE HUMAN IGG1 FC-FRAGMENT,GLYCOFORM (MN2F)2 CRYSTAL STRUCTURE OF THE HUMAN IGG1 FC-FRAGMENT,GLYCOFORM (G0F)2 CRYSTAL STRUCTURE OF A HUMAN IGG1 FC FRAGMENT, HIGH SALT CONDITION IMMUNOGLOBULIN 48G7 GERMLINE FAB ANTIBODY COMPLEXED WITH HAPTEN 5-(PARA-NITROPHENYL PHOSPHONATE)-PENTANOIC ACID. AFFINITY MATURATION OF AN ESTEROLYTIC ANTIBODY UNLIGANDED MATURE OXY-COPE CATALYTIC ANTIBODY UNLIGANDED GERMLINE PRECURSOR OF AN OXY-COPE CATALYTIC ANTIBODY CONFORMATION EFFECTS IN BIOLOGICAL CATALYSIS INTRODUCED BY OXY-COPE ANTIBODY MATURATION FC FRAGMENT OF HUMAN IGG1 IN COMPLEX WITH AN ENGINEERED 13 RESIDUE PEPTIDE DCAWHLGELVWCT-NH2 CRYSTAL STRUCTURE OF SOLUBLE HUMAN IGG1 FC FRAGMENT-FC-GAMMA RECEPTOR III COMPLEX FC FRAGMENT (IGG1 CLASS) CRYSTAL STRUCTURE OF THE INTACT HUMAN IGG B12 WITH BROADAND POTENT ACTIVITY AGAINST PRIMARY HIV-1 ISOLATES: ATEMPLATE FOR HIV VACCINE DESIGN ANTIBODY GNC92H2 BOUND TO LIGAND CRYSTAL STRUCTURE OF A HUMAN FCG RECEPTOR IN COMPLEX WITHAN FC FRAGMENT OF IGG1 ( ORTHORHOMBIC) CRYSTAL STRUCTURE OF A HUMAN FCG RECEPTOR IN COMPLEX WITHAN FC FRAGMENT OF IGG1 ( HEXAGONAL) IMMUNOGLOBULIN 48G7 GERMLINE FAB - AFFINITY MATURATION OF AN ESTEROLYTIC ANTIBODY SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED. PDBE Y PDBE 2002-09-19 REL REL oligosaccharide DGlcpNAcb1-2DManpb1-6DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1- 2 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/3,6,5/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1221m-1a_1-5]/1-1-2-2-1-3/a4-b1_a6-f1_b4-c1_c6-d1_d2-e1 2 PDB2Glycan 1.1.0 WURCS []{[(4+1)][b-D-GlcpNAc]{[(4+1)][a-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(6+1)][b-D-Manp]{[(2+1)][b-D-GlcpNAc]{}}}}[(6+1)][a-L-Fucp]{}}} 2 PDB-CARE LINUCS C1 O4 NAG NAG 2 1 2 O1 HO4 sing C1 O4 BMA NAG 3 2 2 O1 HO4 sing C1 O6 BMA BMA 4 3 2 O1 HO6 sing C1 O2 NAG BMA 5 4 2 O1 HO2 sing C1 O6 FUC NAG 6 1 2 O1 HO6 sing n n n n n n HOH water THE PRIMARY SEQUENCE FOR THIS ENTRY IS VERY SIMILAR TO SWISSPROT ENTRY P01857 (GC1_HUMAN) WITH 96% SEQUENCE IDENTITY. 1FC1 PDB ENTRY 1FC1 PDB experimental model HOH 2001 3 HOH HOH 2001 M HOH 2002 3 HOH HOH 2002 M HOH 2003 3 HOH HOH 2003 M n 1 225 M n 2 226 M n 3 227 M n 4 228 M n 5 229 M n 6 230 M n 7 231 M n 8 232 M n 9 233 M n 10 234 M n 11 235 M n 12 236 M n 13 237 M PRO 238 n 14 PRO 238 M SER 239 n 15 SER 239 M VAL 240 n 16 VAL 240 M PHE 241 n 17 PHE 241 M LEU 242 n 18 LEU 242 M PHE 243 n 19 PHE 243 M PRO 244 n 20 PRO 244 M PRO 245 n 21 PRO 245 M LYS 246 n 22 LYS 246 M PRO 247 n 23 PRO 247 M LYS 248 n 24 LYS 248 M ASP 249 n 25 ASP 249 M THR 250 n 26 THR 250 M LEU 251 n 27 LEU 251 M MET 252 n 28 MET 252 M ILE 253 n 29 ILE 253 M SER 254 n 30 SER 254 M ARG 255 n 31 ARG 255 M THR 256 n 32 THR 256 M PRO 257 n 33 PRO 257 M GLU 258 n 34 GLU 258 M VAL 259 n 35 VAL 259 M THR 260 n 36 THR 260 M CYS 261 n 37 CYS 261 M VAL 262 n 38 VAL 262 M VAL 263 n 39 VAL 263 M VAL 264 n 40 VAL 264 M ASP 265 n 41 ASP 265 M VAL 266 n 42 VAL 266 M SER 267 n 43 SER 267 M HIS 268 n 44 HIS 268 M GLU 269 n 45 GLU 269 M ASP 270 n 46 ASP 270 M PRO 271 n 47 PRO 271 M GLN 272 n 48 GLN 272 M VAL 273 n 49 VAL 273 M LYS 274 n 50 LYS 274 M PHE 275 n 51 PHE 275 M ASN 276 n 52 ASN 276 M TRP 277 n 53 TRP 277 M TYR 278 n 54 TYR 278 M VAL 279 n 55 VAL 279 M ASP 280 n 56 ASP 280 M GLY 281 n 57 GLY 281 M VAL 282 n 58 VAL 282 M GLN 283 n 59 GLN 283 M VAL 284 n 60 VAL 284 M HIS 285 n 61 HIS 285 M ASN 286 n 62 ASN 286 M ALA 287 n 63 ALA 287 M LYS 288 n 64 LYS 288 M THR 289 n 65 THR 289 M LYS 290 n 66 LYS 290 M PRO 291 n 67 PRO 291 M ARG 292 n 68 ARG 292 M GLU 293 n 69 GLU 293 M GLN 294 n 70 GLN 294 M GLN 295 n 71 GLN 295 M TYR 296 n 72 TYR 296 M ASN 297 n 73 ASN 297 M SER 298 n 74 SER 298 M THR 299 n 75 THR 299 M TYR 300 n 76 TYR 300 M ARG 301 n 77 ARG 301 M VAL 302 n 78 VAL 302 M VAL 303 n 79 VAL 303 M SER 304 n 80 SER 304 M VAL 305 n 81 VAL 305 M LEU 306 n 82 LEU 306 M THR 307 n 83 THR 307 M VAL 308 n 84 VAL 308 M LEU 309 n 85 LEU 309 M HIS 310 n 86 HIS 310 M GLN 311 n 87 GLN 311 M ASN 312 n 88 ASN 312 M TRP 313 n 89 TRP 313 M LEU 314 n 90 LEU 314 M ASP 315 n 91 ASP 315 M GLY 316 n 92 GLY 316 M LYS 317 n 93 LYS 317 M GLU 318 n 94 GLU 318 M TYR 319 n 95 TYR 319 M LYS 320 n 96 LYS 320 M CYS 321 n 97 CYS 321 M LYS 322 n 98 LYS 322 M VAL 323 n 99 VAL 323 M SER 324 n 100 SER 324 M ASN 325 n 101 ASN 325 M LYS 326 n 102 LYS 326 M ALA 327 n 103 ALA 327 M LEU 328 n 104 LEU 328 M PRO 329 n 105 PRO 329 M ALA 330 n 106 ALA 330 M PRO 331 n 107 PRO 331 M ILE 332 n 108 ILE 332 M GLU 333 n 109 GLU 333 M LYS 334 n 110 LYS 334 M THR 335 n 111 THR 335 M ILE 336 n 112 ILE 336 M SER 337 n 113 SER 337 M LYS 338 n 114 LYS 338 M ALA 339 n 115 ALA 339 M LYS 340 n 116 LYS 340 M GLY 341 n 117 GLY 341 M GLN 342 n 118 GLN 342 M PRO 343 n 119 PRO 343 M ARG 344 n 120 ARG 344 M GLU 345 n 121 GLU 345 M PRO 346 n 122 PRO 346 M GLN 347 n 123 GLN 347 M VAL 348 n 124 VAL 348 M TYR 349 n 125 TYR 349 M THR 350 n 126 THR 350 M LEU 351 n 127 LEU 351 M PRO 352 n 128 PRO 352 M PRO 353 n 129 PRO 353 M SER 354 n 130 SER 354 M ARG 355 n 131 ARG 355 M GLU 356 n 132 GLU 356 M GLU 357 n 133 GLU 357 M MET 358 n 134 MET 358 M THR 359 n 135 THR 359 M LYS 360 n 136 LYS 360 M ASN 361 n 137 ASN 361 M GLN 362 n 138 GLN 362 M VAL 363 n 139 VAL 363 M SER 364 n 140 SER 364 M LEU 365 n 141 LEU 365 M THR 366 n 142 THR 366 M CYS 367 n 143 CYS 367 M LEU 368 n 144 LEU 368 M VAL 369 n 145 VAL 369 M LYS 370 n 146 LYS 370 M GLY 371 n 147 GLY 371 M PHE 372 n 148 PHE 372 M TYR 373 n 149 TYR 373 M PRO 374 n 150 PRO 374 M SER 375 n 151 SER 375 M ASP 376 n 152 ASP 376 M ILE 377 n 153 ILE 377 M ALA 378 n 154 ALA 378 M VAL 379 n 155 VAL 379 M GLU 380 n 156 GLU 380 M TRP 381 n 157 TRP 381 M GLU 382 n 158 GLU 382 M SER 383 n 159 SER 383 M ASN 384 n 160 ASN 384 M GLY 385 n 161 GLY 385 M GLN 386 n 162 GLN 386 M PRO 387 n 163 PRO 387 M GLU 388 n 164 GLU 388 M ASN 389 n 165 ASN 389 M ASN 390 n 166 ASN 390 M TYR 391 n 167 TYR 391 M LYS 392 n 168 LYS 392 M THR 393 n 169 THR 393 M THR 394 n 170 THR 394 M PRO 395 n 171 PRO 395 M PRO 396 n 172 PRO 396 M VAL 397 n 173 VAL 397 M LEU 398 n 174 LEU 398 M ASP 399 n 175 ASP 399 M SER 400 n 176 SER 400 M ASP 401 n 177 ASP 401 M GLY 402 n 178 GLY 402 M SER 403 n 179 SER 403 M PHE 404 n 180 PHE 404 M PHE 405 n 181 PHE 405 M LEU 406 n 182 LEU 406 M TYR 407 n 183 TYR 407 M SER 408 n 184 SER 408 M LYS 409 n 185 LYS 409 M LEU 410 n 186 LEU 410 M THR 411 n 187 THR 411 M VAL 412 n 188 VAL 412 M ASP 413 n 189 ASP 413 M LYS 414 n 190 LYS 414 M SER 415 n 191 SER 415 M ARG 416 n 192 ARG 416 M TRP 417 n 193 TRP 417 M GLN 418 n 194 GLN 418 M GLN 419 n 195 GLN 419 M GLY 420 n 196 GLY 420 M ASN 421 n 197 ASN 421 M VAL 422 n 198 VAL 422 M PHE 423 n 199 PHE 423 M SER 424 n 200 SER 424 M CYS 425 n 201 CYS 425 M SER 426 n 202 SER 426 M VAL 427 n 203 VAL 427 M MET 428 n 204 MET 428 M HIS 429 n 205 HIS 429 M GLU 430 n 206 GLU 430 M ALA 431 n 207 ALA 431 M LEU 432 n 208 LEU 432 M HIS 433 n 209 HIS 433 M ASN 434 n 210 ASN 434 M HIS 435 n 211 HIS 435 M TYR 436 n 212 TYR 436 M THR 437 n 213 THR 437 M GLN 438 n 214 GLN 438 M LYS 439 n 215 LYS 439 M SER 440 n 216 SER 440 M LEU 441 n 217 LEU 441 M SER 442 n 218 SER 442 M LEU 443 n 219 LEU 443 M n 220 444 M n 221 445 M n 222 446 M n 223 447 M author_and_software_defined_assembly PQS 2 dimeric M ASN 297 GLYCOSYLATION SITE A ASN 73 ASN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_555 -x,y,-z+1/2 crystal symmetry operation 0.0000000000 0.0000000000 37.8750000000 M N PHE 243 A N PHE 19 M O THR 260 A O THR 36 M N VAL 266 A N VAL 42 M O TYR 300 A O TYR 76 M N VAL 305 A N VAL 81 M O LYS 290 A O LYS 66 M N VAL 282 A N VAL 58 M O VAL 279 A O VAL 55 M N TYR 278 A N TYR 54 M O LYS 320 A O LYS 96 M N VAL 323 A N VAL 99 M O ILE 332 A O ILE 108 M N LEU 351 A N LEU 127 M O THR 366 A O THR 142 M N GLY 371 A N GLY 147 M O PHE 404 A O PHE 180 M N LYS 409 A N LYS 185 M O LYS 392 A O LYS 168 M N LEU 351 A N LEU 127 M O THR 366 A O THR 142 M N GLY 371 A N GLY 147 M O PHE 404 A O PHE 180 M N PHE 405 A N PHE 181 M O VAL 397 A O VAL 173 M N GLU 382 A N GLU 158 M O SER 424 A O SER 200 M N VAL 427 A N VAL 203 M O THR 437 A O THR 213 1 M CB LYS 246 A CB LYS 22 1 Y 1 M CG LYS 246 A CG LYS 22 1 Y 1 M CD LYS 246 A CD LYS 22 1 Y 1 M CE LYS 246 A CE LYS 22 1 Y 1 M NZ LYS 246 A NZ LYS 22 1 Y 1 M CD1 ILE 253 A CD1 ILE 29 1 Y 1 M CB SER 254 A CB SER 30 1 Y 1 M OG SER 254 A OG SER 30 1 Y 1 M CG ASN 286 A CG ASN 62 1 Y 1 M OD1 ASN 286 A OD1 ASN 62 1 Y 1 M ND2 ASN 286 A ND2 ASN 62 1 Y 1 M CB LYS 288 A CB LYS 64 1 Y 1 M CG LYS 288 A CG LYS 64 1 Y 1 M CD LYS 288 A CD LYS 64 1 Y 1 M CE LYS 288 A CE LYS 64 1 Y 1 M NZ LYS 288 A NZ LYS 64 1 Y 1 M CG LYS 290 A CG LYS 66 1 Y 1 M CD LYS 290 A CD LYS 66 1 Y 1 M CE LYS 290 A CE LYS 66 1 Y 1 M NZ LYS 290 A NZ LYS 66 1 Y 1 M CD ARG 292 A CD ARG 68 1 Y 1 M NE ARG 292 A NE ARG 68 1 Y 1 M CZ ARG 292 A CZ ARG 68 1 Y 1 M NH1 ARG 292 A NH1 ARG 68 1 Y 1 M NH2 ARG 292 A NH2 ARG 68 1 Y 1 M CG GLN 295 A CG GLN 71 1 Y 1 M CD GLN 295 A CD GLN 71 1 Y 1 M OE1 GLN 295 A OE1 GLN 71 1 Y 1 M NE2 GLN 295 A NE2 GLN 71 1 Y 1 M CE1 TYR 296 A CE1 TYR 72 1 Y 1 M CE2 TYR 296 A CE2 TYR 72 1 Y 1 M CZ TYR 296 A CZ TYR 72 1 Y 1 M OH TYR 296 A OH TYR 72 1 Y 1 M CG GLN 311 A CG GLN 87 1 Y 1 M CD GLN 311 A CD GLN 87 1 Y 1 M OE1 GLN 311 A OE1 GLN 87 1 Y 1 M NE2 GLN 311 A NE2 GLN 87 1 Y 1 M NZ LYS 317 A NZ LYS 93 0 Y 1 M CD LYS 322 A CD LYS 98 1 Y 1 M CE LYS 322 A CE LYS 98 1 Y 1 M NZ LYS 322 A NZ LYS 98 1 Y 1 M CB SER 324 A CB SER 100 1 Y 1 M OG SER 324 A OG SER 100 1 Y 1 M NZ LYS 326 A NZ LYS 102 1 Y 1 M CB ALA 330 A CB ALA 106 1 Y 1 M NZ LYS 334 A NZ LYS 110 1 Y 1 M CE LYS 340 A CE LYS 116 1 Y 1 M NZ LYS 340 A NZ LYS 116 1 Y 1 M CB GLN 342 A CB GLN 118 1 Y 1 M CG GLN 342 A CG GLN 118 1 Y 1 M CD GLN 342 A CD GLN 118 1 Y 1 M OE1 GLN 342 A OE1 GLN 118 1 Y 1 M NE2 GLN 342 A NE2 GLN 118 1 Y 1 M CD ARG 355 A CD ARG 131 1 Y 1 M NE ARG 355 A NE ARG 131 1 Y 1 M CZ ARG 355 A CZ ARG 131 1 Y 1 M NH1 ARG 355 A NH1 ARG 131 1 Y 1 M NH2 ARG 355 A NH2 ARG 131 1 Y 1 M CD LYS 360 A CD LYS 136 1 Y 1 M CE LYS 360 A CE LYS 136 1 Y 1 M NZ LYS 360 A NZ LYS 136 1 Y 1 M OG SER 383 A OG SER 159 1 Y 1 M OD1 ASN 384 A OD1 ASN 160 1 Y 1 M ND2 ASN 384 A ND2 ASN 160 1 Y 1 M CG GLN 386 A CG GLN 162 1 Y 1 M CD GLN 386 A CD GLN 162 1 Y 1 M OE1 GLN 386 A OE1 GLN 162 1 Y 1 M NE2 GLN 386 A NE2 GLN 162 1 Y 1 M CE LYS 414 A CE LYS 190 1 Y 1 M NZ LYS 414 A NZ LYS 190 1 Y 1 M OG SER 440 A OG SER 216 1 Y 1 M CD1 LEU 443 A CD1 LEU 219 1 Y 1 M THR 225 A THR 1 1 Y 1 M CYS 226 A CYS 2 1 Y 1 M PRO 227 A PRO 3 1 Y 1 M PRO 228 A PRO 4 1 Y 1 M CYS 229 A CYS 5 1 Y 1 M PRO 230 A PRO 6 1 Y 1 M ALA 231 A ALA 7 1 Y 1 M PRO 232 A PRO 8 1 Y 1 M GLU 233 A GLU 9 1 Y 1 M LEU 234 A LEU 10 1 Y 1 M LEU 235 A LEU 11 1 Y 1 M GLY 236 A GLY 12 1 Y 1 M GLY 237 A GLY 13 1 Y 1 M SER 444 A SER 220 1 Y 1 M PRO 445 A PRO 221 1 Y 1 M GLY 446 A GLY 222 1 Y 1 M LYS 447 A LYS 223 1 Y 1 A C1 NAG 2 WRONG HAND 1 M M O N VAL ASN 284 286 2.17 1 10.12 1.50 119.30 129.42 M M M C N CA LYS PRO PRO 290 291 291 Y 1 -15.55 2.10 128.40 112.85 M M M C N CD LYS PRO PRO 290 291 291 Y 1 -16.84 2.70 111.00 94.16 M M M N CA C SER SER SER 298 298 298 N 1 M ASP 265 63.60 64.44 1 M SER 267 -24.69 116.55 1 M ASP 280 73.13 -22.23 1 M HIS 285 -2.87 -59.44 1 M ASN 286 -69.90 -72.87 1 M ALA 287 19.95 39.69 1 M ARG 292 176.95 125.26 1 M GLN 294 -160.31 112.10 1 M TYR 296 -124.38 -135.11 1 M ASN 297 -11.03 -59.25 1 M SER 298 162.07 17.71 1 M PRO 329 -50.34 -83.66 1 M ASP 376 -40.00 104.80 1 M ASN 384 -178.64 -119.28 1 M TYR 391 -171.45 134.92 1 M LYS 414 -37.95 -25.73 1 M GLU 430 -43.57 -70.97 1 M ALA 431 -63.53 23.72 1 M HIS 435 58.80 19.05 0.32 0.279 0.279 2.85 50 6390 5.0 97.5 RANDOM 1 THROUGHOUT 0.0 MOLECULAR REPLACEMENT PDB ENTRY 1FC1 2.85 50 3 1661 74 0 1584 0.008 1.4 2.820 50.000 1H3W 6718 2.000 0.08200 1 2.000 97.5 0.53000 1 81.8 refinement CNS 1.0 data reduction DENZO data scaling SCALEPACK phasing AMoRE Structural analysis of human IgG-Fc glycoforms reveals a correlation between glycosylation and structural integrity 1 N N 2 N N 3 N N M LYS 246 A LYS 22 HELX_P M LEU 251 A LEU 27 1 1 6 M LEU 309 A LEU 85 HELX_P M ASP 315 A ASP 91 1 2 7 M LYS 414 A LYS 190 HELX_P M GLY 420 A GLY 196 1 3 7 disulf 2.031 M CYS 261 A SG CYS 37 1_555 M CYS 321 A SG CYS 97 1_555 disulf 2.037 M CYS 367 A SG CYS 143 1_555 M CYS 425 A SG CYS 201 1_555 covale 1.459 one N-Glycosylation M ASN 297 A ND2 ASN 73 1_555 A NAG 1 B C1 NAG 1_555 covale 1.389 both A NAG 1 B O4 NAG 1_555 A NAG 2 B C1 NAG 1_555 covale 1.396 both A NAG 1 B O6 NAG 1_555 A FUC 6 B C1 FUC 1_555 covale 1.391 both A NAG 2 B O4 NAG 1_555 A BMA 3 B C1 BMA 1_555 covale 1.405 both A BMA 3 B O6 BMA 1_555 A BMA 4 B C1 BMA 1_555 covale 1.390 both A BMA 4 B O2 BMA 1_555 A NAG 5 B C1 NAG 1_555 IMMUNE SYSTEM IMMUNOGLOBULIN/FC-FRAGMENT, FC-FRAGMENT, GLYCOSYLATION, FCGR, ANTIBODY, EFFECTOR FUNCTIONS, IMMUNE SYSTEM M TYR 373 A TYR 149 1 M PRO 374 A PRO 150 -0.13 1H3W PDB 1 1H3W 225 447 1H3W 225 447 1H3W M 1 1 223 4 4 4 4 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel M SER 239 A SER 15 M PHE 243 A PHE 19 M GLU 258 A GLU 34 M VAL 266 A VAL 42 M TYR 300 A TYR 76 M THR 307 A THR 83 M LYS 290 A LYS 66 M ARG 292 A ARG 68 M VAL 282 A VAL 58 M GLN 283 A GLN 59 M LYS 274 A LYS 50 M VAL 279 A VAL 55 M TYR 319 A TYR 95 M SER 324 A SER 100 M ILE 332 A ILE 108 M ILE 336 A ILE 112 M GLN 347 A GLN 123 M LEU 351 A LEU 127 M GLN 362 A GLN 138 M PHE 372 A PHE 148 M PHE 404 A PHE 180 M ASP 413 A ASP 189 M TYR 391 A TYR 167 M THR 393 A THR 169 M GLN 347 A GLN 123 M LEU 351 A LEU 127 M GLN 362 A GLN 138 M PHE 372 A PHE 148 M PHE 404 A PHE 180 M ASP 413 A ASP 189 M VAL 397 A VAL 173 M LEU 398 A LEU 174 M ILE 377 A ILE 153 M GLU 382 A GLU 158 M VAL 422 A VAL 198 M HIS 429 A HIS 205 M THR 437 A THR 213 M SER 442 A SER 218 20 C 2 2 21