0.007103
0.000000
0.000000
0.000000
0.007103
0.000000
0.000000
0.000000
0.004220
0.00000
0.00000
0.00000
Yaremchuk, A.
Tukalo, M.
Cusack, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
140.780
140.780
236.970
C10 H15 N2 O9 P
338.208
n
5-METHYLURIDINE 5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C15 H21 N7 O7 S
443.435
'5'-O-(N-(L-PROLYL)-SULFAMOYL)ADENOSINE
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C9 H13 N2 O9 P
324.181
n
PSEUDOURIDINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
N
C
N
3
N
N
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
C
N
8
N
O
N
9
N
O
N
10
R
C
N
11
R
C
N
12
N
O
N
13
S
C
N
14
R
C
N
15
N
O
N
16
N
O
N
17
N
C
N
18
N
O
N
19
N
P
N
20
N
O
N
21
N
O
N
22
N
O
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
R
C
N
49
N
O
N
50
R
C
Y
51
N
N
Y
52
N
C
Y
53
N
N
Y
54
N
C
Y
55
N
C
N
56
N
N
Y
57
N
N
Y
58
N
C
Y
59
N
N
Y
60
N
C
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
N
N
76
S
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
N
N
96
N
C
N
97
N
N
N
98
N
N
N
99
N
O
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
N
N
116
S
C
N
117
N
C
N
118
N
O
N
119
N
C
N
120
N
C
N
121
N
O
N
122
N
N
N
123
N
O
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
N
N
133
S
C
N
134
N
C
N
135
N
O
N
136
N
C
N
137
N
C
N
138
N
O
N
139
N
O
N
140
N
O
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
O
N
149
N
P
N
150
N
O
N
151
N
O
N
152
N
O
N
153
N
C
N
154
R
C
N
155
N
O
N
156
S
C
N
157
N
O
N
158
R
C
N
159
N
O
N
160
R
C
N
161
N
N
N
162
N
C
N
163
N
O
N
164
N
N
N
165
N
C
N
166
N
N
N
167
N
C
N
168
N
C
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
R
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
S
N
189
N
O
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
O
N
198
N
P
N
199
N
O
N
200
N
O
N
201
N
O
N
202
N
C
N
203
R
C
N
204
N
O
N
205
S
C
N
206
N
O
N
207
R
C
N
208
N
O
N
209
R
C
Y
210
N
N
Y
211
N
C
Y
212
N
N
Y
213
N
C
N
214
N
C
N
215
N
O
N
216
N
N
N
217
N
C
N
218
N
N
N
219
N
N
Y
220
N
C
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
N
N
236
S
C
N
237
N
C
N
238
N
O
N
239
N
C
N
240
N
C
N
241
N
C
N
242
N
O
N
243
N
N
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
N
N
256
S
C
N
257
N
C
N
258
N
O
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
O
N
263
N
O
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
O
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
N
N
285
S
C
N
286
N
C
N
287
N
O
N
288
N
C
Y
289
N
C
Y
290
N
N
Y
291
N
C
Y
292
N
C
Y
293
N
N
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
O
N
306
N
H
N
307
N
H
N
308
N
N
N
309
S
C
N
310
N
C
N
311
N
O
N
312
S
C
N
313
N
C
N
314
N
C
N
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
N
N
331
S
C
N
332
N
C
N
333
N
O
N
334
N
C
N
335
N
C
N
336
N
C
N
337
N
C
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
N
357
N
C
N
358
N
C
N
359
N
C
N
360
N
N
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
N
382
N
C
N
383
N
S
N
384
N
C
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
C
N
398
N
C
N
399
N
C
N
400
N
O
N
401
N
N
N
402
N
C
N
403
S
C
N
404
N
N
N
405
N
S
N
406
N
O
N
407
N
O
N
408
N
O
N
409
N
C
N
410
R
C
N
411
N
O
N
412
R
C
Y
413
N
N
Y
414
N
C
Y
415
N
N
Y
416
N
C
Y
417
N
N
Y
418
N
C
N
419
N
N
Y
420
N
C
Y
421
N
N
Y
422
N
C
N
423
R
C
N
424
N
O
N
425
S
C
N
426
N
O
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
N
N
449
S
C
N
450
N
C
N
451
N
O
N
452
N
C
Y
453
N
C
Y
454
N
C
Y
455
N
C
Y
456
N
C
Y
457
N
C
Y
458
N
C
N
459
N
O
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
N
N
472
S
C
N
473
N
C
N
474
N
O
N
475
N
C
N
476
N
C
N
477
N
C
N
478
N
O
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
N
N
489
N
C
N
490
N
N
N
491
N
C
N
492
N
C
N
493
N
C
N
494
N
O
N
495
N
O
N
496
S
C
N
497
R
C
N
498
N
O
N
499
S
C
N
500
R
C
N
501
N
O
N
502
N
O
N
503
N
C
N
504
N
O
N
505
N
P
N
506
N
O
N
507
N
O
N
508
N
O
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
N
N
523
S
C
N
524
N
C
N
525
N
O
N
526
N
C
N
527
N
O
N
528
N
O
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
S
N
537
N
O
N
538
N
O
N
539
N
O
N
540
N
O
N
541
N
N
N
542
S
C
N
543
N
C
N
544
N
O
N
545
R
C
N
546
N
O
N
547
N
C
N
548
N
O
N
549
N
H
N
550
N
H
N
551
N
H
N
552
N
H
N
553
N
H
N
554
N
H
N
555
N
H
N
556
N
H
N
557
N
H
N
558
N
N
N
559
S
C
N
560
N
C
N
561
N
O
N
562
N
C
Y
563
N
C
Y
564
N
C
Y
565
N
C
Y
566
N
N
Y
567
N
C
Y
568
N
C
Y
569
N
C
Y
570
N
C
Y
571
N
C
N
572
N
O
N
573
N
H
N
574
N
H
N
575
N
H
N
576
N
H
N
577
N
H
N
578
N
H
N
579
N
H
N
580
N
H
N
581
N
H
N
582
N
H
N
583
N
H
N
584
N
H
N
585
N
N
N
586
S
C
N
587
N
C
N
588
N
O
N
589
N
C
Y
590
N
C
Y
591
N
C
Y
592
N
C
Y
593
N
C
Y
594
N
C
Y
595
N
C
N
596
N
O
N
597
N
O
N
598
N
H
N
599
N
H
N
600
N
H
N
601
N
H
N
602
N
H
N
603
N
H
N
604
N
H
N
605
N
H
N
606
N
H
N
607
N
H
N
608
N
H
N
609
N
O
N
610
N
P
N
611
N
O
N
612
N
O
N
613
N
O
N
614
N
C
N
615
R
C
N
616
N
O
N
617
S
C
N
618
N
O
N
619
R
C
N
620
N
O
N
621
R
C
N
622
N
N
N
623
N
C
N
624
N
O
N
625
N
N
N
626
N
C
N
627
N
O
N
628
N
C
N
629
N
C
N
630
N
H
N
631
N
H
N
632
N
H
N
633
N
H
N
634
N
H
N
635
N
H
N
636
N
H
N
637
N
H
N
638
N
H
N
639
N
H
N
640
N
H
N
641
N
H
N
642
N
H
N
643
N
N
N
644
S
C
N
645
N
C
N
646
N
O
N
647
N
C
N
648
N
C
N
649
N
C
N
650
N
O
N
651
N
H
N
652
N
H
N
653
N
H
N
654
N
H
N
655
N
H
N
656
N
H
N
657
N
H
N
658
N
H
N
659
N
H
N
660
N
H
N
661
N
H
N
662
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
doub
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
doub
N
10
N
sing
N
11
N
doub
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
doub
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
Y
63
N
sing
Y
64
N
sing
Y
65
N
doub
N
66
N
sing
Y
67
N
sing
Y
68
N
sing
Y
69
N
doub
N
70
N
sing
Y
71
N
doub
N
72
N
sing
N
73
N
sing
Y
74
N
sing
Y
75
N
doub
N
76
N
sing
Y
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
doub
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
doub
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
Y
220
N
sing
Y
221
N
sing
Y
222
N
doub
N
223
N
sing
Y
224
N
sing
N
225
N
sing
Y
226
N
doub
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
doub
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
doub
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
doub
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
Y
293
N
sing
Y
294
N
doub
Y
295
N
doub
N
296
N
sing
Y
297
N
sing
N
298
N
sing
Y
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
doub
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
doub
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
doub
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
doub
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
doub
N
409
N
doub
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
Y
422
N
sing
Y
423
N
sing
Y
424
N
doub
Y
425
N
sing
Y
426
N
sing
Y
427
N
doub
N
428
N
sing
Y
429
N
sing
N
430
N
sing
Y
431
N
doub
N
432
N
sing
N
433
N
sing
Y
434
N
sing
Y
435
N
doub
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
doub
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
Y
455
N
doub
Y
456
N
sing
Y
457
N
sing
N
458
N
sing
Y
459
N
doub
N
460
N
sing
Y
461
N
doub
N
462
N
sing
Y
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
doub
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
doub
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
doub
N
493
N
doub
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
doub
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
doub
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
doub
N
533
N
doub
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
doub
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
doub
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
sing
Y
563
N
doub
Y
564
N
sing
Y
565
N
sing
N
566
N
sing
Y
567
N
doub
Y
568
N
sing
Y
569
N
sing
N
570
N
sing
Y
571
N
sing
Y
572
N
doub
N
573
N
sing
Y
574
N
doub
N
575
N
sing
Y
576
N
sing
N
577
N
sing
N
578
N
sing
N
579
N
sing
N
580
N
sing
N
581
N
sing
N
582
N
sing
N
583
N
sing
N
584
N
sing
N
585
N
sing
N
586
N
doub
N
587
N
sing
N
588
N
sing
N
589
N
sing
N
590
N
sing
Y
591
N
doub
Y
592
N
sing
Y
593
N
sing
N
594
N
sing
Y
595
N
doub
N
596
N
sing
Y
597
N
doub
N
598
N
sing
Y
599
N
sing
N
600
N
sing
N
601
N
sing
N
602
N
sing
N
603
N
sing
N
604
N
sing
N
605
N
sing
N
606
N
doub
N
607
N
sing
N
608
N
sing
N
609
N
sing
N
610
N
sing
N
611
N
sing
N
612
N
sing
N
613
N
sing
N
614
N
sing
N
615
N
sing
N
616
N
sing
N
617
N
sing
N
618
N
sing
N
619
N
sing
N
620
N
sing
N
621
N
sing
N
622
N
sing
N
623
N
sing
N
624
N
sing
N
625
N
sing
N
626
N
sing
N
627
N
sing
N
628
N
sing
N
629
N
sing
N
630
N
doub
N
631
N
sing
N
632
N
sing
N
633
N
sing
N
634
N
doub
N
635
N
sing
N
636
N
doub
N
637
N
sing
N
638
N
sing
N
639
N
sing
N
640
N
sing
N
641
N
sing
N
642
N
sing
N
643
N
sing
N
644
N
sing
N
645
N
doub
N
646
N
sing
N
647
N
sing
N
648
N
sing
N
649
N
sing
N
650
N
sing
N
651
N
sing
N
652
N
sing
N
653
N
sing
N
654
N
sing
N
655
N
sing
N
656
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
309
989
10.1006/JMBI.2001.4712
11399074
A Succession of Substrate Induced Conformational Changes Ensures the Amino Acid Specificity of Thermus Thermophilus Prolyl-tRNA Synthetase: Comparison with Histidyl-tRNA Synthetase
2001
UK
Embo J.
EMJODG
0897
0261-4189
19
4745
10.1093/EMBOJ/19.17.4745
10970866
Crystal Structure of a Eukaryote/Archaeon-Like Prolyl-tRNA Synthetase and its Complex with tRNA (Pro)(Cgg)
2000
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
56
195
10.1107/S0907444999015498
10666603
Crystallisation and Preliminary X-Ray Diffraction Analysis of Thermus Thermophilus Prolyl-tRNA Synthetase
2000
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
56
197
10.1107/S0907444999015504
10666604
Improved Crystals of Thermus Thermophilus Prolyl-tRNA Synthetase Complexed with Cognate tRNA Obtained by Crystallisation from Precipitate
2000
UK
Structure
STRUE6
2005
0969-2126
6
101
10.1016/S0969-2126(98)00011-2
9493271
TRNA(Pro) Recognition by Thermus Thermophilus Prolyl-tRNA Synthetase
1997
10.2210/pdb1h4s/pdb
pdb_00001h4s
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
IMAGE PLATE
1998-04-15
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
0.99
1.0
ID2
ESRF
0.99
SYNCHROTRON
ESRF BEAMLINE ID2
EACH MONOMER CONTAINS 1 ZINC ATOM CO-ORDINATED TO CYS-427, CYS432, CYS-458, CYS-461
54562.965
PROLYL-TRNA SYNTHETASE
6.1.1.15
2
nat
polymer
NOTE INSERTION IN D-LOOP (NUCLEOTIDE 17A). NOT ALL BASE MODIFICATIONS DETERMINED. ONLY 5MU-54 AND PSU-55 USED IN STRUCTURE.
24927.875
TRNAPRO(CGG)
1
nat
polymer
65.409
ZINC ION
2
syn
non-polymer
443.435
'5'-O-(N-(L-PROLYL)-SULFAMOYL)ADENOSINE
2
syn
non-polymer
96.063
SULFATE ION
4
syn
non-polymer
18.015
water
32
nat
water
no
no
MAKEKGLTPQSQDFSEWYLEVIQKAELADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKE
AEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQE
GHTAHATREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEALMKDGKALQAGTSHYLGENFARAF
DIKFQDRDLQVKYVHTTSWGLSWRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGL
RVHLDDRDQHTPGYKFHEWELKGVPFRVELGPKDLEGGQAVLASRLGGKETLPLAALPEALPGKLDAFHEELYRRALAFR
EDHTRKVDTYEAFKEAVQEGFALAFHCGDKACERLIQEETTATTRCVPFEAEPEEGFCVRCGRPSAYGKRVVFAKAY
MAKEKGLTPQSQDFSEWYLEVIQKAELADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKE
AEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQE
GHTAHATREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEALMKDGKALQAGTSHYLGENFARAF
DIKFQDRDLQVKYVHTTSWGLSWRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGL
RVHLDDRDQHTPGYKFHEWELKGVPFRVELGPKDLEGGQAVLASRLGGKETLPLAALPEALPGKLDAFHEELYRRALAFR
EDHTRKVDTYEAFKEAVQEGFALAFHCGDKACERLIQEETTATTRCVPFEAEPEEGFCVRCGRPSAYGKRVVFAKAY
A,B
polypeptide(L)
no
yes
CGGGGAGUAGCGCAGCCCGGUAGCGCACCUCGUUCGGGACGAGGGGGGCGCUGG(5MU)(PSU)CAGAUCCAGUCUCCCC
GACCA
CGGGGAGUAGCGCAGCCCGGUAGCGCACCUCGUUCGGGACGAGGGGGGCGCUGGUUCAGAUCCAGUCUCCCCGACCA
T
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
PURIFICATION OF PROTEIN DESCRIBED IN REFERENCE 2
sample
274
THERMUS THERMOPHILUS
HB-8
PURIFICATION OF TRNAPRO DESCRIBED IN REFERENCE 3
sample
274
THERMUS THERMOPHILUS
HB-8
1
4.38
72
7.90
SEE REFERENCE 3, pH 7.90
-12.439
1
19
T
4
T
69
-2.084
T_G4:C69_T
1
-7.028
-0.146
-0.819
-0.174
-7.381
1
19
T
5
T
68
-4.189
T_G5:C68_T
2
-8.377
-0.303
-0.021
-0.221
-3.601
1
20
T
6
T
67
6.346
T_A6:U67_T
3
-0.543
-0.178
0.324
-0.287
3.107
1
19
T
7
T
66
1.772
T_G7:C66_T
4
3.703
-0.111
0.453
-0.034
2.902
1
28
T
49
T
65
-1.576
T_G49:U65_T
5
-9.780
-1.879
-0.174
-0.383
-3.644
1
19
T
50
T
64
2.447
T_C50:G64_T
6
-10.647
0.073
0.570
-0.090
8.388
1
20
T
51
T
63
2.735
T_U51:A63_T
7
-13.150
0.117
-0.125
-0.285
-2.525
1
19
T
52
T
62
-10.424
T_G52:C62_T
8
-11.558
-1.223
-0.016
-0.835
-10.147
1
19
T
53
T
61
-0.142
T_G53:C61_T
9
-11.785
-0.092
0.153
-0.374
-4.419
4
T
54
T
58
-97.230
T_5MU54:G58_T
10
8.491
3.816
0.565
-2.109
10.953
2
T
55
T
18
-100.807
T_PSU55:G18_T
11
8.576
0.435
0.370
-5.600
-16.749
1
20
T
38
T
32
5.587
T_A38:U32_T
12
-13.664
0.038
-0.223
-0.225
-6.065
1
19
T
39
T
31
3.136
T_C39:G31_T
13
-7.749
0.318
0.076
-0.223
-0.746
1
19
T
40
T
30
2.125
T_G40:C30_T
14
-1.430
-0.231
-0.051
-0.212
15.709
1
20
T
41
T
29
-2.361
T_A41:U29_T
15
-6.240
0.261
0.536
-0.163
-3.229
1
19
T
42
T
28
4.575
T_G42:C28_T
16
-17.428
-0.295
0.100
-0.116
-25.428
1
19
T
43
T
27
0.161
T_G43:C27_T
17
-26.531
-0.419
0.021
-0.171
-40.579
1
8
T
44
T
26
-18.233
T_G44:A26_T
18
-20.633
-0.097
0.189
1.680
-2.503
1
19
T
10
T
25
7.057
T_G10:C25_T
19
-1.794
-0.750
-0.313
-0.256
0.635
1
19
T
11
T
24
0.601
T_C11:G24_T
20
-6.199
0.005
-0.194
-0.513
-6.285
1
19
T
12
T
23
2.530
T_G12:C23_T
21
-11.829
-0.449
-0.167
-0.279
-2.639
1
19
T
13
T
22
0.778
T_C13:G22_T
22
-8.485
0.214
0.295
-0.220
2.541
4
24
T
14
T
8
-94.737
T_A14:U8_T
23
12.303
-3.792
0.333
-1.992
4.174
2
22
T
15
T
48
157.163
T_G15:C48_T
24
4.335
0.185
0.157
3.982
-27.312
1
19
T
19
T
56
0.935
T_G19:C56_T
25
-25.254
0.217
0.015
-0.194
2.690
27.882
T
T
4
5
13.653
T
T
69
68
3.202
6.491
0.087
-1.623
TT_G4G5:C68C69_TT
1
-4.552
9.574
26.753
-4.794
-1.181
2.720
30.919
T
T
5
6
7.487
T
T
68
67
3.013
3.980
1.402
-1.574
TT_G5A6:U67C68_TT
2
-1.525
2.870
30.631
-3.631
-2.890
2.077
32.496
T
T
6
7
17.966
T
T
67
66
2.851
9.902
-0.301
-2.169
TT_A6G7:C66U67_TT
3
-0.049
0.090
30.990
-5.215
0.532
2.656
27.161
T
T
7
49
10.529
T
T
66
65
3.182
4.901
-0.057
-2.443
TT_G7G49:U65C66_TT
4
4.014
-8.624
26.425
-6.318
1.036
3.236
44.768
T
T
49
50
1.743
T
T
65
64
3.326
1.324
0.206
-1.380
TT_G49C50:G64U65_TT
5
-5.684
7.482
44.406
-1.933
-0.792
2.577
28.380
T
T
50
51
4.350
T
T
64
63
2.803
2.127
-0.662
-1.892
TT_C50U51:A63G64_TT
6
2.879
-5.888
28.158
-4.264
1.897
2.526
22.337
T
T
51
52
21.451
T
T
63
62
3.584
8.090
0.043
-2.144
TT_U51G52:C62A63_TT
7
-3.453
9.156
20.552
-8.477
-1.367
3.182
40.228
T
T
52
53
7.273
T
T
62
61
3.384
4.990
1.191
-1.797
TT_G52G53:C61C62_TT
8
1.310
-1.910
39.909
-3.182
-1.582
3.270
88.253
T
T
53
54
0.254
T
T
61
58
3.263
0.354
-2.753
-2.090
TT_G535MU54:G58C61_TT
9
-0.545
0.391
88.251
-1.508
1.966
3.794
47.240
T
T
54
55
-4.864
T
T
58
18
3.300
-3.852
1.831
-1.967
TT_5MU54PSU55:G18G58_TT
10
12.458
-15.728
45.504
-2.107
-1.160
3.285
32.687
T
T
38
39
-2.770
T
T
32
31
3.181
-1.557
-0.700
-1.459
TT_A38C39:G31U32_TT
11
-2.216
3.942
32.578
-2.325
0.865
2.334
27.739
T
T
39
40
25.422
T
T
31
30
3.110
11.811
-0.380
-1.193
TT_C39G40:C30G31_TT
12
-0.812
1.747
25.130
-4.981
0.622
2.781
32.899
T
T
40
41
2.886
T
T
30
29
2.854
1.631
0.009
-1.111
TT_G40A41:U29C30_TT
13
-3.542
6.268
32.673
-2.202
-0.539
2.988
30.641
T
T
41
42
17.680
T
T
29
28
3.646
9.144
0.966
-2.100
TT_A41G42:C28U29_TT
14
6.092
-11.778
28.647
-5.869
-0.565
2.424
36.792
T
T
42
43
26.037
T
T
28
27
3.598
15.815
1.101
-2.349
TT_G42G43:C27C28_TT
15
7.356
-12.111
32.521
-5.836
-0.762
2.898
40.467
T
T
43
44
11.459
T
T
27
26
3.294
7.880
-1.277
-1.782
TT_G43G44:A26C27_TT
16
0.158
-0.230
39.724
-3.420
1.863
1.617
66.186
T
T
44
10
4.637
T
T
26
25
2.768
5.002
-3.294
-2.880
TT_G44G10:C25A26_TT
17
19.174
-17.775
63.474
-2.776
3.547
2.908
37.353
T
T
10
11
8.404
T
T
25
24
3.112
5.362
-0.697
-1.486
TT_G10C11:G24C25_TT
18
-2.046
3.207
36.925
-2.976
0.839
2.830
34.470
T
T
11
12
17.976
T
T
24
23
3.371
10.473
0.519
-1.439
TT_C11G12:C23G24_TT
19
3.707
-6.363
32.682
-4.014
-0.315
2.973
29.579
T
T
12
13
6.921
T
T
23
22
3.134
3.522
1.214
-1.929
TT_G12C13:G22C23_TT
20
2.376
-4.670
29.280
-4.479
-1.905
3.143
61.635
T
T
13
14
-4.024
T
T
22
8
3.201
-4.119
-1.330
-0.345
TT_C13A14:U8G22_TT
21
3.490
-3.410
61.421
-0.150
1.457
3.200
-66.739
T
T
14
15
-4.938
T
T
8
48
3.056
5.425
1.822
-3.571
TT_A14G15:C48U8_TT
22
4.147
3.775
-66.429
3.042
1.813
atom_site
chem_comp
chem_comp_atom
chem_comp_bond
database_2
entity
pdbx_database_status
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_conn_angle
pdbx_unobs_or_zero_occ_atoms
struct_conn
struct_conn_type
struct_site
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Advisory
Atomic model
Data collection
Database references
Derived calculations
Non-polymer description
Other
Structure summary
Refinement description
1
0
2001-06-18
1
1
2011-05-08
1
2
2011-07-13
2
0
2023-08-16
2
1
2023-12-13
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.type_symbol
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.id
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.type
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_entity.formula_weight
_entity.pdbx_description
_pdbx_database_status.status_code_sf
_pdbx_entity_nonpoly.comp_id
_pdbx_entity_nonpoly.name
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
PROLYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH TRNAPRO(CGG), ATP AND PROLINOL
PROLYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH L-PROLINE
PROLYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS
PDBE
Y
PDBE
2001-05-14
REL
REL
ZN
ZINC ION
P5A
'5'-O-(N-(L-PROLYL)-SULFAMOYL)ADENOSINE
SO4
SULFATE ION
HOH
water
1HC7
PDB ENTRY 1HC7 (LIGAND FREE PROLYL-TRNA SYNTHETASE)
PDB
experimental model
ZN
490
3
ZN
ZN
490
A
PSD
1478
4
P5A
P5A
1478
A
SO4
1480
5
SO4
SO4
1480
A
SO4
1481
5
SO4
SO4
1481
A
ZN
490
3
ZN
ZN
490
B
PSD
1478
4
P5A
P5A
1478
B
SO4
1480
5
SO4
SO4
1480
B
SO4
1481
5
SO4
SO4
1481
B
HOH
2001
6
HOH
HOH
2001
A
HOH
2002
6
HOH
HOH
2002
A
HOH
2003
6
HOH
HOH
2003
A
HOH
2004
6
HOH
HOH
2004
A
HOH
2005
6
HOH
HOH
2005
A
HOH
2006
6
HOH
HOH
2006
A
HOH
2007
6
HOH
HOH
2007
A
HOH
2008
6
HOH
HOH
2008
A
HOH
2009
6
HOH
HOH
2009
A
HOH
2010
6
HOH
HOH
2010
A
HOH
2011
6
HOH
HOH
2011
A
HOH
2012
6
HOH
HOH
2012
A
HOH
2013
6
HOH
HOH
2013
A
HOH
2014
6
HOH
HOH
2014
A
HOH
2015
6
HOH
HOH
2015
A
HOH
2016
6
HOH
HOH
2016
A
HOH
2017
6
HOH
HOH
2017
A
HOH
2018
6
HOH
HOH
2018
A
HOH
2019
6
HOH
HOH
2019
A
HOH
2020
6
HOH
HOH
2020
A
HOH
2021
6
HOH
HOH
2021
A
HOH
2022
6
HOH
HOH
2022
A
HOH
2023
6
HOH
HOH
2023
A
HOH
2001
6
HOH
HOH
2001
B
HOH
2002
6
HOH
HOH
2002
B
HOH
2003
6
HOH
HOH
2003
B
HOH
2004
6
HOH
HOH
2004
B
HOH
2005
6
HOH
HOH
2005
B
HOH
2006
6
HOH
HOH
2006
B
HOH
2007
6
HOH
HOH
2007
B
HOH
2001
6
HOH
HOH
2001
T
HOH
2002
6
HOH
HOH
2002
T
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
LYS
5
n
5
LYS
5
A
GLY
6
n
6
GLY
6
A
LEU
7
n
7
LEU
7
A
THR
8
n
8
THR
8
A
PRO
9
n
9
PRO
9
A
GLN
10
n
10
GLN
10
A
SER
11
n
11
SER
11
A
GLN
12
n
12
GLN
12
A
ASP
13
n
13
ASP
13
A
PHE
14
n
14
PHE
14
A
SER
15
n
15
SER
15
A
GLU
16
n
16
GLU
16
A
TRP
17
n
17
TRP
17
A
TYR
18
n
18
TYR
18
A
LEU
19
n
19
LEU
19
A
GLU
20
n
20
GLU
20
A
VAL
21
n
21
VAL
21
A
ILE
22
n
22
ILE
22
A
GLN
23
n
23
GLN
23
A
LYS
24
n
24
LYS
24
A
ALA
25
n
25
ALA
25
A
GLU
26
n
26
GLU
26
A
LEU
27
n
27
LEU
27
A
ALA
28
n
28
ALA
28
A
ASP
29
n
29
ASP
29
A
TYR
30
n
30
TYR
30
A
GLY
31
n
31
GLY
31
A
PRO
32
n
32
PRO
32
A
VAL
33
n
33
VAL
33
A
ARG
34
n
34
ARG
34
A
GLY
35
n
35
GLY
35
A
THR
36
n
36
THR
36
A
ILE
37
n
37
ILE
37
A
VAL
38
n
38
VAL
38
A
VAL
39
n
39
VAL
39
A
ARG
40
n
40
ARG
40
A
PRO
41
n
41
PRO
41
A
TYR
42
n
42
TYR
42
A
GLY
43
n
43
GLY
43
A
TYR
44
n
44
TYR
44
A
ALA
45
n
45
ALA
45
A
ILE
46
n
46
ILE
46
A
TRP
47
n
47
TRP
47
A
GLU
48
n
48
GLU
48
A
ASN
49
n
49
ASN
49
A
ILE
50
n
50
ILE
50
A
GLN
51
n
51
GLN
51
A
GLN
52
n
52
GLN
52
A
VAL
53
n
53
VAL
53
A
LEU
54
n
54
LEU
54
A
ASP
55
n
55
ASP
55
A
ARG
56
n
56
ARG
56
A
MET
57
n
57
MET
57
A
PHE
58
n
58
PHE
58
A
LYS
59
n
59
LYS
59
A
GLU
60
n
60
GLU
60
A
THR
61
n
61
THR
61
A
GLY
62
n
62
GLY
62
A
HIS
63
n
63
HIS
63
A
GLN
64
n
64
GLN
64
A
ASN
65
n
65
ASN
65
A
ALA
66
n
66
ALA
66
A
TYR
67
n
67
TYR
67
A
PHE
68
n
68
PHE
68
A
PRO
69
n
69
PRO
69
A
LEU
70
n
70
LEU
70
A
PHE
71
n
71
PHE
71
A
ILE
72
n
72
ILE
72
A
PRO
73
n
73
PRO
73
A
MET
74
n
74
MET
74
A
SER
75
n
75
SER
75
A
PHE
76
n
76
PHE
76
A
LEU
77
n
77
LEU
77
A
ARG
78
n
78
ARG
78
A
LYS
79
n
79
LYS
79
A
GLU
80
n
80
GLU
80
A
ALA
81
n
81
ALA
81
A
GLU
82
n
82
GLU
82
A
HIS
83
n
83
HIS
83
A
VAL
84
n
84
VAL
84
A
GLU
85
n
85
GLU
85
A
GLY
86
n
86
GLY
86
A
PHE
87
n
87
PHE
87
A
SER
88
n
88
SER
88
A
PRO
89
n
89
PRO
89
A
GLU
90
n
90
GLU
90
A
LEU
91
n
91
LEU
91
A
ALA
92
n
92
ALA
92
A
VAL
93
n
93
VAL
93
A
VAL
94
n
94
VAL
94
A
THR
95
n
95
THR
95
A
HIS
96
n
96
HIS
96
A
ALA
97
n
97
ALA
97
A
GLY
98
n
98
GLY
98
A
GLY
99
n
99
GLY
99
A
GLU
100
n
100
GLU
100
A
GLU
101
n
101
GLU
101
A
LEU
102
n
102
LEU
102
A
GLU
103
n
103
GLU
103
A
GLU
104
n
104
GLU
104
A
PRO
105
n
105
PRO
105
A
LEU
106
n
106
LEU
106
A
ALA
107
n
107
ALA
107
A
VAL
108
n
108
VAL
108
A
ARG
109
n
109
ARG
109
A
PRO
110
n
110
PRO
110
A
THR
111
n
111
THR
111
A
SER
112
n
112
SER
112
A
GLU
113
n
113
GLU
113
A
THR
114
n
114
THR
114
A
VAL
115
n
115
VAL
115
A
ILE
116
n
116
ILE
116
A
GLY
117
n
117
GLY
117
A
TYR
118
n
118
TYR
118
A
MET
119
n
119
MET
119
A
TRP
120
n
120
TRP
120
A
SER
121
n
121
SER
121
A
LYS
122
n
122
LYS
122
A
TRP
123
n
123
TRP
123
A
ILE
124
n
124
ILE
124
A
ARG
125
n
125
ARG
125
A
SER
126
n
126
SER
126
A
TRP
127
n
127
TRP
127
A
ARG
128
n
128
ARG
128
A
ASP
129
n
129
ASP
129
A
LEU
130
n
130
LEU
130
A
PRO
131
n
131
PRO
131
A
GLN
132
n
132
GLN
132
A
LEU
133
n
133
LEU
133
A
LEU
134
n
134
LEU
134
A
ASN
135
n
135
ASN
135
A
GLN
136
n
136
GLN
136
A
TRP
137
n
137
TRP
137
A
GLY
138
n
138
GLY
138
A
ASN
139
n
139
ASN
139
A
VAL
140
n
140
VAL
140
A
VAL
141
n
141
VAL
141
A
ARG
142
n
142
ARG
142
A
TRP
143
n
143
TRP
143
A
GLU
144
n
144
GLU
144
A
MET
145
n
145
MET
145
A
ARG
146
n
146
ARG
146
A
THR
147
n
147
THR
147
A
ARG
148
n
148
ARG
148
A
PRO
149
n
149
PRO
149
A
PHE
150
n
150
PHE
150
A
LEU
151
n
151
LEU
151
A
ARG
152
n
152
ARG
152
A
THR
153
n
153
THR
153
A
SER
154
n
154
SER
154
A
GLU
155
n
155
GLU
155
A
PHE
156
n
156
PHE
156
A
LEU
157
n
157
LEU
157
A
TRP
158
n
158
TRP
158
A
GLN
159
n
159
GLN
159
A
GLU
160
n
160
GLU
160
A
GLY
161
n
161
GLY
161
A
HIS
162
n
162
HIS
162
A
THR
163
n
163
THR
163
A
ALA
164
n
164
ALA
164
A
HIS
165
n
165
HIS
165
A
ALA
166
n
166
ALA
166
A
THR
167
n
167
THR
167
A
ARG
168
n
168
ARG
168
A
GLU
169
n
169
GLU
169
A
GLU
170
n
170
GLU
170
A
ALA
171
n
171
ALA
171
A
GLU
172
n
172
GLU
172
A
GLU
173
n
173
GLU
173
A
GLU
174
n
174
GLU
174
A
VAL
175
n
175
VAL
175
A
ARG
176
n
176
ARG
176
A
ARG
177
n
177
ARG
177
A
MET
178
n
178
MET
178
A
LEU
179
n
179
LEU
179
A
SER
180
n
180
SER
180
A
ILE
181
n
181
ILE
181
A
TYR
182
n
182
TYR
182
A
ALA
183
n
183
ALA
183
A
ARG
184
n
184
ARG
184
A
LEU
185
n
185
LEU
185
A
ALA
186
n
186
ALA
186
A
ARG
187
n
187
ARG
187
A
GLU
188
n
188
GLU
188
A
TYR
189
n
189
TYR
189
A
ALA
190
n
190
ALA
190
A
ALA
191
n
191
ALA
191
A
ILE
192
n
192
ILE
192
A
PRO
193
n
193
PRO
193
A
VAL
194
n
194
VAL
194
A
ILE
195
n
195
ILE
195
A
GLU
196
n
196
GLU
196
A
GLY
197
n
197
GLY
197
A
LEU
198
n
198
LEU
198
A
LYS
199
n
199
LYS
199
A
THR
200
n
200
THR
200
A
GLU
201
n
201
GLU
201
A
LYS
202
n
202
LYS
202
A
GLU
203
n
203
GLU
203
A
LYS
204
n
204
LYS
204
A
PHE
205
n
205
PHE
205
A
ALA
206
n
206
ALA
206
A
GLY
207
n
207
GLY
207
A
ALA
208
n
208
ALA
208
A
VAL
209
n
209
VAL
209
A
TYR
210
n
210
TYR
210
A
THR
211
n
211
THR
211
A
THR
212
n
212
THR
212
A
THR
213
n
213
THR
213
A
ILE
214
n
214
ILE
214
A
GLU
215
n
215
GLU
215
A
ALA
216
n
216
ALA
216
A
LEU
217
n
217
LEU
217
A
MET
218
n
218
MET
218
A
LYS
219
n
219
LYS
219
A
ASP
220
n
220
ASP
220
A
GLY
221
n
221
GLY
221
A
LYS
222
n
222
LYS
222
A
ALA
223
n
223
ALA
223
A
LEU
224
n
224
LEU
224
A
GLN
225
n
225
GLN
225
A
ALA
226
n
226
ALA
226
A
GLY
227
n
227
GLY
227
A
THR
228
n
228
THR
228
A
SER
229
n
229
SER
229
A
HIS
230
n
230
HIS
230
A
TYR
231
n
231
TYR
231
A
LEU
232
n
232
LEU
232
A
GLY
233
n
233
GLY
233
A
GLU
234
n
234
GLU
234
A
ASN
235
n
235
ASN
235
A
PHE
236
n
236
PHE
236
A
ALA
237
n
237
ALA
237
A
ARG
238
n
238
ARG
238
A
ALA
239
n
239
ALA
239
A
PHE
240
n
240
PHE
240
A
ASP
241
n
241
ASP
241
A
ILE
242
n
242
ILE
242
A
LYS
243
n
243
LYS
243
A
PHE
244
n
244
PHE
244
A
GLN
245
n
245
GLN
245
A
ASP
246
n
246
ASP
246
A
ARG
247
n
247
ARG
247
A
ASP
248
n
248
ASP
248
A
LEU
249
n
249
LEU
249
A
GLN
250
n
250
GLN
250
A
VAL
251
n
251
VAL
251
A
LYS
252
n
252
LYS
252
A
TYR
253
n
253
TYR
253
A
VAL
254
n
254
VAL
254
A
HIS
255
n
255
HIS
255
A
THR
256
n
256
THR
256
A
THR
257
n
257
THR
257
A
SER
258
n
258
SER
258
A
TRP
259
n
259
TRP
259
A
GLY
260
n
260
GLY
260
A
LEU
261
n
261
LEU
261
A
SER
262
n
262
SER
262
A
TRP
263
n
263
TRP
263
A
ARG
264
n
264
ARG
264
A
PHE
265
n
265
PHE
265
A
ILE
266
n
266
ILE
266
A
GLY
267
n
267
GLY
267
A
ALA
268
n
268
ALA
268
A
ILE
269
n
269
ILE
269
A
ILE
270
n
270
ILE
270
A
MET
271
n
271
MET
271
A
THR
272
n
272
THR
272
A
HIS
273
n
273
HIS
273
A
GLY
274
n
274
GLY
274
A
ASP
275
n
275
ASP
275
A
ASP
276
n
276
ASP
276
A
ARG
277
n
277
ARG
277
A
GLY
278
n
278
GLY
278
A
LEU
279
n
279
LEU
279
A
VAL
280
n
280
VAL
280
A
LEU
281
n
281
LEU
281
A
PRO
282
n
282
PRO
282
A
PRO
283
n
283
PRO
283
A
ARG
284
n
284
ARG
284
A
LEU
285
n
285
LEU
285
A
ALA
286
n
286
ALA
286
A
PRO
287
n
287
PRO
287
A
ILE
288
n
288
ILE
288
A
GLN
289
n
289
GLN
289
A
VAL
290
n
290
VAL
290
A
VAL
291
n
291
VAL
291
A
ILE
292
n
292
ILE
292
A
VAL
293
n
293
VAL
293
A
PRO
294
n
294
PRO
294
A
ILE
295
n
295
ILE
295
A
TYR
296
n
296
TYR
296
A
LYS
297
n
297
LYS
297
A
ASP
298
n
298
ASP
298
A
GLU
299
n
299
GLU
299
A
SER
300
n
300
SER
300
A
ARG
301
n
301
ARG
301
A
GLU
302
n
302
GLU
302
A
ARG
303
n
303
ARG
303
A
VAL
304
n
304
VAL
304
A
LEU
305
n
305
LEU
305
A
GLU
306
n
306
GLU
306
A
ALA
307
n
307
ALA
307
A
ALA
308
n
308
ALA
308
A
GLN
309
n
309
GLN
309
A
GLY
310
n
310
GLY
310
A
LEU
311
n
311
LEU
311
A
ARG
312
n
312
ARG
312
A
GLN
313
n
313
GLN
313
A
ALA
314
n
314
ALA
314
A
LEU
315
n
315
LEU
315
A
LEU
316
n
316
LEU
316
A
ALA
317
n
317
ALA
317
A
GLN
318
n
318
GLN
318
A
GLY
319
n
319
GLY
319
A
LEU
320
n
320
LEU
320
A
ARG
321
n
321
ARG
321
A
VAL
322
n
322
VAL
322
A
HIS
323
n
323
HIS
323
A
LEU
324
n
324
LEU
324
A
ASP
325
n
325
ASP
325
A
ASP
326
n
326
ASP
326
A
ARG
327
n
327
ARG
327
A
ASP
328
n
328
ASP
328
A
GLN
329
n
329
GLN
329
A
HIS
330
n
330
HIS
330
A
THR
331
n
331
THR
331
A
PRO
332
n
332
PRO
332
A
GLY
333
n
333
GLY
333
A
TYR
334
n
334
TYR
334
A
LYS
335
n
335
LYS
335
A
PHE
336
n
336
PHE
336
A
HIS
337
n
337
HIS
337
A
GLU
338
n
338
GLU
338
A
TRP
339
n
339
TRP
339
A
GLU
340
n
340
GLU
340
A
LEU
341
n
341
LEU
341
A
LYS
342
n
342
LYS
342
A
GLY
343
n
343
GLY
343
A
VAL
344
n
344
VAL
344
A
PRO
345
n
345
PRO
345
A
PHE
346
n
346
PHE
346
A
ARG
347
n
347
ARG
347
A
VAL
348
n
348
VAL
348
A
GLU
349
n
349
GLU
349
A
LEU
350
n
350
LEU
350
A
GLY
351
n
351
GLY
351
A
PRO
352
n
352
PRO
352
A
LYS
353
n
353
LYS
353
A
ASP
354
n
354
ASP
354
A
LEU
355
n
355
LEU
355
A
GLU
356
n
356
GLU
356
A
GLY
357
n
357
GLY
357
A
GLY
358
n
358
GLY
358
A
GLN
359
n
359
GLN
359
A
ALA
360
n
360
ALA
360
A
VAL
361
n
361
VAL
361
A
LEU
362
n
362
LEU
362
A
ALA
363
n
363
ALA
363
A
SER
364
n
364
SER
364
A
ARG
365
n
365
ARG
365
A
LEU
366
n
366
LEU
366
A
GLY
367
n
367
GLY
367
A
GLY
368
n
368
GLY
368
A
LYS
369
n
369
LYS
369
A
GLU
370
n
370
GLU
370
A
THR
371
n
371
THR
371
A
LEU
372
n
372
LEU
372
A
PRO
373
n
373
PRO
373
A
LEU
374
n
374
LEU
374
A
ALA
375
n
375
ALA
375
A
ALA
376
n
376
ALA
376
A
LEU
377
n
377
LEU
377
A
PRO
378
n
378
PRO
378
A
GLU
379
n
379
GLU
379
A
ALA
380
n
380
ALA
380
A
LEU
381
n
381
LEU
381
A
PRO
382
n
382
PRO
382
A
GLY
383
n
383
GLY
383
A
LYS
384
n
384
LYS
384
A
LEU
385
n
385
LEU
385
A
ASP
386
n
386
ASP
386
A
ALA
387
n
387
ALA
387
A
PHE
388
n
388
PHE
388
A
HIS
389
n
389
HIS
389
A
GLU
390
n
390
GLU
390
A
GLU
391
n
391
GLU
391
A
LEU
392
n
392
LEU
392
A
TYR
393
n
393
TYR
393
A
ARG
394
n
394
ARG
394
A
ARG
395
n
395
ARG
395
A
ALA
396
n
396
ALA
396
A
LEU
397
n
397
LEU
397
A
ALA
398
n
398
ALA
398
A
PHE
399
n
399
PHE
399
A
ARG
400
n
400
ARG
400
A
GLU
401
n
401
GLU
401
A
ASP
402
n
402
ASP
402
A
HIS
403
n
403
HIS
403
A
THR
404
n
404
THR
404
A
ARG
405
n
405
ARG
405
A
LYS
406
n
406
LYS
406
A
VAL
407
n
407
VAL
407
A
ASP
408
n
408
ASP
408
A
THR
409
n
409
THR
409
A
TYR
410
n
410
TYR
410
A
GLU
411
n
411
GLU
411
A
ALA
412
n
412
ALA
412
A
PHE
413
n
413
PHE
413
A
LYS
414
n
414
LYS
414
A
GLU
415
n
415
GLU
415
A
ALA
416
n
416
ALA
416
A
VAL
417
n
417
VAL
417
A
GLN
418
n
418
GLN
418
A
GLU
419
n
419
GLU
419
A
GLY
420
n
420
GLY
420
A
PHE
421
n
421
PHE
421
A
ALA
422
n
422
ALA
422
A
LEU
423
n
423
LEU
423
A
ALA
424
n
424
ALA
424
A
PHE
425
n
425
PHE
425
A
HIS
426
n
426
HIS
426
A
CYS
427
n
427
CYS
427
A
GLY
428
n
428
GLY
428
A
ASP
429
n
429
ASP
429
A
LYS
430
n
430
LYS
430
A
ALA
431
n
431
ALA
431
A
CYS
432
n
432
CYS
432
A
GLU
433
n
433
GLU
433
A
ARG
434
n
434
ARG
434
A
LEU
435
n
435
LEU
435
A
ILE
436
n
436
ILE
436
A
GLN
437
n
437
GLN
437
A
GLU
438
n
438
GLU
438
A
GLU
439
n
439
GLU
439
A
THR
440
n
440
THR
440
A
THR
441
n
441
THR
441
A
ALA
442
n
442
ALA
442
A
THR
443
n
443
THR
443
A
THR
444
n
444
THR
444
A
ARG
445
n
445
ARG
445
A
CYS
446
n
446
CYS
446
A
VAL
447
n
447
VAL
447
A
PRO
448
n
448
PRO
448
A
PHE
449
n
449
PHE
449
A
GLU
450
n
450
GLU
450
A
ALA
451
n
451
ALA
451
A
GLU
452
n
452
GLU
452
A
PRO
453
n
453
PRO
453
A
GLU
454
n
454
GLU
454
A
GLU
455
n
455
GLU
455
A
GLY
456
n
456
GLY
456
A
PHE
457
n
457
PHE
457
A
CYS
458
n
458
CYS
458
A
VAL
459
n
459
VAL
459
A
ARG
460
n
460
ARG
460
A
CYS
461
n
461
CYS
461
A
GLY
462
n
462
GLY
462
A
ARG
463
n
463
ARG
463
A
PRO
464
n
464
PRO
464
A
SER
465
n
465
SER
465
A
ALA
466
n
466
ALA
466
A
TYR
467
n
467
TYR
467
A
GLY
468
n
468
GLY
468
A
LYS
469
n
469
LYS
469
A
ARG
470
n
470
ARG
470
A
VAL
471
n
471
VAL
471
A
VAL
472
n
472
VAL
472
A
PHE
473
n
473
PHE
473
A
ALA
474
n
474
ALA
474
A
LYS
475
n
475
LYS
475
A
ALA
476
n
476
ALA
476
A
TYR
477
n
477
TYR
477
A
n
1
1
B
n
2
2
B
n
3
3
B
n
4
4
B
LYS
5
n
5
LYS
5
B
GLY
6
n
6
GLY
6
B
LEU
7
n
7
LEU
7
B
THR
8
n
8
THR
8
B
PRO
9
n
9
PRO
9
B
GLN
10
n
10
GLN
10
B
SER
11
n
11
SER
11
B
GLN
12
n
12
GLN
12
B
ASP
13
n
13
ASP
13
B
PHE
14
n
14
PHE
14
B
SER
15
n
15
SER
15
B
GLU
16
n
16
GLU
16
B
TRP
17
n
17
TRP
17
B
TYR
18
n
18
TYR
18
B
LEU
19
n
19
LEU
19
B
GLU
20
n
20
GLU
20
B
VAL
21
n
21
VAL
21
B
ILE
22
n
22
ILE
22
B
GLN
23
n
23
GLN
23
B
LYS
24
n
24
LYS
24
B
ALA
25
n
25
ALA
25
B
GLU
26
n
26
GLU
26
B
LEU
27
n
27
LEU
27
B
ALA
28
n
28
ALA
28
B
ASP
29
n
29
ASP
29
B
TYR
30
n
30
TYR
30
B
GLY
31
n
31
GLY
31
B
PRO
32
n
32
PRO
32
B
VAL
33
n
33
VAL
33
B
ARG
34
n
34
ARG
34
B
GLY
35
n
35
GLY
35
B
THR
36
n
36
THR
36
B
ILE
37
n
37
ILE
37
B
VAL
38
n
38
VAL
38
B
VAL
39
n
39
VAL
39
B
ARG
40
n
40
ARG
40
B
PRO
41
n
41
PRO
41
B
TYR
42
n
42
TYR
42
B
GLY
43
n
43
GLY
43
B
TYR
44
n
44
TYR
44
B
ALA
45
n
45
ALA
45
B
ILE
46
n
46
ILE
46
B
TRP
47
n
47
TRP
47
B
GLU
48
n
48
GLU
48
B
ASN
49
n
49
ASN
49
B
ILE
50
n
50
ILE
50
B
GLN
51
n
51
GLN
51
B
GLN
52
n
52
GLN
52
B
VAL
53
n
53
VAL
53
B
LEU
54
n
54
LEU
54
B
ASP
55
n
55
ASP
55
B
ARG
56
n
56
ARG
56
B
MET
57
n
57
MET
57
B
PHE
58
n
58
PHE
58
B
LYS
59
n
59
LYS
59
B
GLU
60
n
60
GLU
60
B
THR
61
n
61
THR
61
B
GLY
62
n
62
GLY
62
B
HIS
63
n
63
HIS
63
B
GLN
64
n
64
GLN
64
B
ASN
65
n
65
ASN
65
B
ALA
66
n
66
ALA
66
B
TYR
67
n
67
TYR
67
B
PHE
68
n
68
PHE
68
B
PRO
69
n
69
PRO
69
B
LEU
70
n
70
LEU
70
B
PHE
71
n
71
PHE
71
B
ILE
72
n
72
ILE
72
B
PRO
73
n
73
PRO
73
B
MET
74
n
74
MET
74
B
SER
75
n
75
SER
75
B
PHE
76
n
76
PHE
76
B
LEU
77
n
77
LEU
77
B
ARG
78
n
78
ARG
78
B
LYS
79
n
79
LYS
79
B
GLU
80
n
80
GLU
80
B
ALA
81
n
81
ALA
81
B
GLU
82
n
82
GLU
82
B
HIS
83
n
83
HIS
83
B
VAL
84
n
84
VAL
84
B
GLU
85
n
85
GLU
85
B
GLY
86
n
86
GLY
86
B
PHE
87
n
87
PHE
87
B
SER
88
n
88
SER
88
B
PRO
89
n
89
PRO
89
B
GLU
90
n
90
GLU
90
B
LEU
91
n
91
LEU
91
B
ALA
92
n
92
ALA
92
B
VAL
93
n
93
VAL
93
B
VAL
94
n
94
VAL
94
B
THR
95
n
95
THR
95
B
HIS
96
n
96
HIS
96
B
ALA
97
n
97
ALA
97
B
GLY
98
n
98
GLY
98
B
GLY
99
n
99
GLY
99
B
GLU
100
n
100
GLU
100
B
GLU
101
n
101
GLU
101
B
LEU
102
n
102
LEU
102
B
GLU
103
n
103
GLU
103
B
GLU
104
n
104
GLU
104
B
PRO
105
n
105
PRO
105
B
LEU
106
n
106
LEU
106
B
ALA
107
n
107
ALA
107
B
VAL
108
n
108
VAL
108
B
ARG
109
n
109
ARG
109
B
PRO
110
n
110
PRO
110
B
THR
111
n
111
THR
111
B
SER
112
n
112
SER
112
B
GLU
113
n
113
GLU
113
B
THR
114
n
114
THR
114
B
VAL
115
n
115
VAL
115
B
ILE
116
n
116
ILE
116
B
GLY
117
n
117
GLY
117
B
TYR
118
n
118
TYR
118
B
MET
119
n
119
MET
119
B
TRP
120
n
120
TRP
120
B
SER
121
n
121
SER
121
B
LYS
122
n
122
LYS
122
B
TRP
123
n
123
TRP
123
B
ILE
124
n
124
ILE
124
B
ARG
125
n
125
ARG
125
B
SER
126
n
126
SER
126
B
TRP
127
n
127
TRP
127
B
ARG
128
n
128
ARG
128
B
ASP
129
n
129
ASP
129
B
LEU
130
n
130
LEU
130
B
PRO
131
n
131
PRO
131
B
GLN
132
n
132
GLN
132
B
LEU
133
n
133
LEU
133
B
LEU
134
n
134
LEU
134
B
ASN
135
n
135
ASN
135
B
GLN
136
n
136
GLN
136
B
TRP
137
n
137
TRP
137
B
GLY
138
n
138
GLY
138
B
ASN
139
n
139
ASN
139
B
VAL
140
n
140
VAL
140
B
VAL
141
n
141
VAL
141
B
ARG
142
n
142
ARG
142
B
TRP
143
n
143
TRP
143
B
GLU
144
n
144
GLU
144
B
MET
145
n
145
MET
145
B
ARG
146
n
146
ARG
146
B
THR
147
n
147
THR
147
B
ARG
148
n
148
ARG
148
B
PRO
149
n
149
PRO
149
B
PHE
150
n
150
PHE
150
B
LEU
151
n
151
LEU
151
B
ARG
152
n
152
ARG
152
B
THR
153
n
153
THR
153
B
SER
154
n
154
SER
154
B
GLU
155
n
155
GLU
155
B
PHE
156
n
156
PHE
156
B
LEU
157
n
157
LEU
157
B
TRP
158
n
158
TRP
158
B
GLN
159
n
159
GLN
159
B
GLU
160
n
160
GLU
160
B
GLY
161
n
161
GLY
161
B
HIS
162
n
162
HIS
162
B
THR
163
n
163
THR
163
B
ALA
164
n
164
ALA
164
B
HIS
165
n
165
HIS
165
B
ALA
166
n
166
ALA
166
B
THR
167
n
167
THR
167
B
ARG
168
n
168
ARG
168
B
GLU
169
n
169
GLU
169
B
GLU
170
n
170
GLU
170
B
ALA
171
n
171
ALA
171
B
GLU
172
n
172
GLU
172
B
GLU
173
n
173
GLU
173
B
GLU
174
n
174
GLU
174
B
VAL
175
n
175
VAL
175
B
ARG
176
n
176
ARG
176
B
ARG
177
n
177
ARG
177
B
MET
178
n
178
MET
178
B
LEU
179
n
179
LEU
179
B
SER
180
n
180
SER
180
B
ILE
181
n
181
ILE
181
B
TYR
182
n
182
TYR
182
B
ALA
183
n
183
ALA
183
B
ARG
184
n
184
ARG
184
B
LEU
185
n
185
LEU
185
B
ALA
186
n
186
ALA
186
B
ARG
187
n
187
ARG
187
B
GLU
188
n
188
GLU
188
B
TYR
189
n
189
TYR
189
B
ALA
190
n
190
ALA
190
B
ALA
191
n
191
ALA
191
B
ILE
192
n
192
ILE
192
B
PRO
193
n
193
PRO
193
B
VAL
194
n
194
VAL
194
B
ILE
195
n
195
ILE
195
B
GLU
196
n
196
GLU
196
B
GLY
197
n
197
GLY
197
B
LEU
198
n
198
LEU
198
B
LYS
199
n
199
LYS
199
B
THR
200
n
200
THR
200
B
GLU
201
n
201
GLU
201
B
LYS
202
n
202
LYS
202
B
GLU
203
n
203
GLU
203
B
LYS
204
n
204
LYS
204
B
PHE
205
n
205
PHE
205
B
ALA
206
n
206
ALA
206
B
GLY
207
n
207
GLY
207
B
ALA
208
n
208
ALA
208
B
VAL
209
n
209
VAL
209
B
TYR
210
n
210
TYR
210
B
THR
211
n
211
THR
211
B
THR
212
n
212
THR
212
B
THR
213
n
213
THR
213
B
ILE
214
n
214
ILE
214
B
GLU
215
n
215
GLU
215
B
ALA
216
n
216
ALA
216
B
LEU
217
n
217
LEU
217
B
MET
218
n
218
MET
218
B
LYS
219
n
219
LYS
219
B
ASP
220
n
220
ASP
220
B
GLY
221
n
221
GLY
221
B
LYS
222
n
222
LYS
222
B
ALA
223
n
223
ALA
223
B
LEU
224
n
224
LEU
224
B
GLN
225
n
225
GLN
225
B
ALA
226
n
226
ALA
226
B
GLY
227
n
227
GLY
227
B
THR
228
n
228
THR
228
B
SER
229
n
229
SER
229
B
HIS
230
n
230
HIS
230
B
TYR
231
n
231
TYR
231
B
LEU
232
n
232
LEU
232
B
GLY
233
n
233
GLY
233
B
GLU
234
n
234
GLU
234
B
ASN
235
n
235
ASN
235
B
PHE
236
n
236
PHE
236
B
ALA
237
n
237
ALA
237
B
ARG
238
n
238
ARG
238
B
ALA
239
n
239
ALA
239
B
PHE
240
n
240
PHE
240
B
ASP
241
n
241
ASP
241
B
ILE
242
n
242
ILE
242
B
LYS
243
n
243
LYS
243
B
PHE
244
n
244
PHE
244
B
GLN
245
n
245
GLN
245
B
ASP
246
n
246
ASP
246
B
ARG
247
n
247
ARG
247
B
ASP
248
n
248
ASP
248
B
LEU
249
n
249
LEU
249
B
GLN
250
n
250
GLN
250
B
VAL
251
n
251
VAL
251
B
LYS
252
n
252
LYS
252
B
TYR
253
n
253
TYR
253
B
VAL
254
n
254
VAL
254
B
HIS
255
n
255
HIS
255
B
THR
256
n
256
THR
256
B
THR
257
n
257
THR
257
B
SER
258
n
258
SER
258
B
TRP
259
n
259
TRP
259
B
GLY
260
n
260
GLY
260
B
LEU
261
n
261
LEU
261
B
SER
262
n
262
SER
262
B
TRP
263
n
263
TRP
263
B
ARG
264
n
264
ARG
264
B
PHE
265
n
265
PHE
265
B
ILE
266
n
266
ILE
266
B
GLY
267
n
267
GLY
267
B
ALA
268
n
268
ALA
268
B
ILE
269
n
269
ILE
269
B
ILE
270
n
270
ILE
270
B
MET
271
n
271
MET
271
B
THR
272
n
272
THR
272
B
HIS
273
n
273
HIS
273
B
GLY
274
n
274
GLY
274
B
ASP
275
n
275
ASP
275
B
ASP
276
n
276
ASP
276
B
ARG
277
n
277
ARG
277
B
GLY
278
n
278
GLY
278
B
LEU
279
n
279
LEU
279
B
VAL
280
n
280
VAL
280
B
LEU
281
n
281
LEU
281
B
PRO
282
n
282
PRO
282
B
PRO
283
n
283
PRO
283
B
ARG
284
n
284
ARG
284
B
LEU
285
n
285
LEU
285
B
ALA
286
n
286
ALA
286
B
PRO
287
n
287
PRO
287
B
ILE
288
n
288
ILE
288
B
GLN
289
n
289
GLN
289
B
VAL
290
n
290
VAL
290
B
VAL
291
n
291
VAL
291
B
ILE
292
n
292
ILE
292
B
VAL
293
n
293
VAL
293
B
PRO
294
n
294
PRO
294
B
ILE
295
n
295
ILE
295
B
TYR
296
n
296
TYR
296
B
LYS
297
n
297
LYS
297
B
ASP
298
n
298
ASP
298
B
GLU
299
n
299
GLU
299
B
SER
300
n
300
SER
300
B
ARG
301
n
301
ARG
301
B
GLU
302
n
302
GLU
302
B
ARG
303
n
303
ARG
303
B
VAL
304
n
304
VAL
304
B
LEU
305
n
305
LEU
305
B
GLU
306
n
306
GLU
306
B
ALA
307
n
307
ALA
307
B
ALA
308
n
308
ALA
308
B
GLN
309
n
309
GLN
309
B
GLY
310
n
310
GLY
310
B
LEU
311
n
311
LEU
311
B
ARG
312
n
312
ARG
312
B
GLN
313
n
313
GLN
313
B
ALA
314
n
314
ALA
314
B
LEU
315
n
315
LEU
315
B
LEU
316
n
316
LEU
316
B
ALA
317
n
317
ALA
317
B
GLN
318
n
318
GLN
318
B
GLY
319
n
319
GLY
319
B
LEU
320
n
320
LEU
320
B
ARG
321
n
321
ARG
321
B
VAL
322
n
322
VAL
322
B
HIS
323
n
323
HIS
323
B
LEU
324
n
324
LEU
324
B
ASP
325
n
325
ASP
325
B
ASP
326
n
326
ASP
326
B
ARG
327
n
327
ARG
327
B
ASP
328
n
328
ASP
328
B
GLN
329
n
329
GLN
329
B
HIS
330
n
330
HIS
330
B
THR
331
n
331
THR
331
B
PRO
332
n
332
PRO
332
B
GLY
333
n
333
GLY
333
B
TYR
334
n
334
TYR
334
B
LYS
335
n
335
LYS
335
B
PHE
336
n
336
PHE
336
B
HIS
337
n
337
HIS
337
B
GLU
338
n
338
GLU
338
B
TRP
339
n
339
TRP
339
B
GLU
340
n
340
GLU
340
B
LEU
341
n
341
LEU
341
B
LYS
342
n
342
LYS
342
B
GLY
343
n
343
GLY
343
B
VAL
344
n
344
VAL
344
B
PRO
345
n
345
PRO
345
B
PHE
346
n
346
PHE
346
B
ARG
347
n
347
ARG
347
B
VAL
348
n
348
VAL
348
B
GLU
349
n
349
GLU
349
B
LEU
350
n
350
LEU
350
B
GLY
351
n
351
GLY
351
B
PRO
352
n
352
PRO
352
B
LYS
353
n
353
LYS
353
B
ASP
354
n
354
ASP
354
B
LEU
355
n
355
LEU
355
B
GLU
356
n
356
GLU
356
B
GLY
357
n
357
GLY
357
B
GLY
358
n
358
GLY
358
B
GLN
359
n
359
GLN
359
B
ALA
360
n
360
ALA
360
B
VAL
361
n
361
VAL
361
B
LEU
362
n
362
LEU
362
B
ALA
363
n
363
ALA
363
B
SER
364
n
364
SER
364
B
ARG
365
n
365
ARG
365
B
LEU
366
n
366
LEU
366
B
GLY
367
n
367
GLY
367
B
GLY
368
n
368
GLY
368
B
LYS
369
n
369
LYS
369
B
GLU
370
n
370
GLU
370
B
THR
371
n
371
THR
371
B
LEU
372
n
372
LEU
372
B
PRO
373
n
373
PRO
373
B
LEU
374
n
374
LEU
374
B
ALA
375
n
375
ALA
375
B
ALA
376
n
376
ALA
376
B
LEU
377
n
377
LEU
377
B
PRO
378
n
378
PRO
378
B
GLU
379
n
379
GLU
379
B
ALA
380
n
380
ALA
380
B
LEU
381
n
381
LEU
381
B
PRO
382
n
382
PRO
382
B
GLY
383
n
383
GLY
383
B
LYS
384
n
384
LYS
384
B
LEU
385
n
385
LEU
385
B
ASP
386
n
386
ASP
386
B
ALA
387
n
387
ALA
387
B
PHE
388
n
388
PHE
388
B
HIS
389
n
389
HIS
389
B
GLU
390
n
390
GLU
390
B
GLU
391
n
391
GLU
391
B
LEU
392
n
392
LEU
392
B
TYR
393
n
393
TYR
393
B
ARG
394
n
394
ARG
394
B
ARG
395
n
395
ARG
395
B
ALA
396
n
396
ALA
396
B
LEU
397
n
397
LEU
397
B
ALA
398
n
398
ALA
398
B
PHE
399
n
399
PHE
399
B
ARG
400
n
400
ARG
400
B
GLU
401
n
401
GLU
401
B
ASP
402
n
402
ASP
402
B
HIS
403
n
403
HIS
403
B
THR
404
n
404
THR
404
B
ARG
405
n
405
ARG
405
B
LYS
406
n
406
LYS
406
B
VAL
407
n
407
VAL
407
B
ASP
408
n
408
ASP
408
B
THR
409
n
409
THR
409
B
TYR
410
n
410
TYR
410
B
GLU
411
n
411
GLU
411
B
ALA
412
n
412
ALA
412
B
PHE
413
n
413
PHE
413
B
LYS
414
n
414
LYS
414
B
GLU
415
n
415
GLU
415
B
ALA
416
n
416
ALA
416
B
VAL
417
n
417
VAL
417
B
GLN
418
n
418
GLN
418
B
GLU
419
n
419
GLU
419
B
GLY
420
n
420
GLY
420
B
PHE
421
n
421
PHE
421
B
ALA
422
n
422
ALA
422
B
LEU
423
n
423
LEU
423
B
ALA
424
n
424
ALA
424
B
PHE
425
n
425
PHE
425
B
HIS
426
n
426
HIS
426
B
CYS
427
n
427
CYS
427
B
GLY
428
n
428
GLY
428
B
ASP
429
n
429
ASP
429
B
LYS
430
n
430
LYS
430
B
ALA
431
n
431
ALA
431
B
CYS
432
n
432
CYS
432
B
GLU
433
n
433
GLU
433
B
ARG
434
n
434
ARG
434
B
LEU
435
n
435
LEU
435
B
ILE
436
n
436
ILE
436
B
GLN
437
n
437
GLN
437
B
GLU
438
n
438
GLU
438
B
GLU
439
n
439
GLU
439
B
THR
440
n
440
THR
440
B
THR
441
n
441
THR
441
B
ALA
442
n
442
ALA
442
B
THR
443
n
443
THR
443
B
THR
444
n
444
THR
444
B
ARG
445
n
445
ARG
445
B
CYS
446
n
446
CYS
446
B
VAL
447
n
447
VAL
447
B
PRO
448
n
448
PRO
448
B
PHE
449
n
449
PHE
449
B
GLU
450
n
450
GLU
450
B
ALA
451
n
451
ALA
451
B
GLU
452
n
452
GLU
452
B
PRO
453
n
453
PRO
453
B
GLU
454
n
454
GLU
454
B
GLU
455
n
455
GLU
455
B
GLY
456
n
456
GLY
456
B
PHE
457
n
457
PHE
457
B
CYS
458
n
458
CYS
458
B
VAL
459
n
459
VAL
459
B
ARG
460
n
460
ARG
460
B
CYS
461
n
461
CYS
461
B
GLY
462
n
462
GLY
462
B
ARG
463
n
463
ARG
463
B
PRO
464
n
464
PRO
464
B
SER
465
n
465
SER
465
B
ALA
466
n
466
ALA
466
B
TYR
467
n
467
TYR
467
B
GLY
468
n
468
GLY
468
B
LYS
469
n
469
LYS
469
B
ARG
470
n
470
ARG
470
B
VAL
471
n
471
VAL
471
B
VAL
472
n
472
VAL
472
B
PHE
473
n
473
PHE
473
B
ALA
474
n
474
ALA
474
B
LYS
475
n
475
LYS
475
B
ALA
476
n
476
ALA
476
B
TYR
477
n
477
TYR
477
B
n
1
1
T
n
2
2
T
n
3
3
T
G
4
n
4
G
4
T
G
5
n
5
G
5
T
A
6
n
6
A
6
T
G
7
n
7
G
7
T
U
8
n
8
U
8
T
A
9
n
9
A
9
T
G
10
n
10
G
10
T
C
11
n
11
C
11
T
G
12
n
12
G
12
T
C
13
n
13
C
13
T
A
14
n
14
A
14
T
G
15
n
15
G
15
T
C
16
n
16
C
16
T
C
17
n
17
C
17
T
C
17
n
18
A
C
17
T
G
18
n
19
G
18
T
G
19
n
20
G
19
T
U
20
n
21
U
20
T
A
21
n
22
A
21
T
G
22
n
23
G
22
T
C
23
n
24
C
23
T
G
24
n
25
G
24
T
C
25
n
26
C
25
T
A
26
n
27
A
26
T
C
27
n
28
C
27
T
C
28
n
29
C
28
T
U
29
n
30
U
29
T
C
30
n
31
C
30
T
G
31
n
32
G
31
T
U
32
n
33
U
32
T
U
33
n
34
U
33
T
C
34
n
35
C
34
T
G
35
n
36
G
35
T
G
36
n
37
G
36
T
G
37
n
38
G
37
T
A
38
n
39
A
38
T
C
39
n
40
C
39
T
G
40
n
41
G
40
T
A
41
n
42
A
41
T
G
42
n
43
G
42
T
G
43
n
44
G
43
T
G
44
n
45
G
44
T
G
45
n
46
G
45
T
G
46
n
47
G
46
T
G
47
n
48
G
47
T
C
48
n
49
C
48
T
G
49
n
50
G
49
T
C
50
n
51
C
50
T
U
51
n
52
U
51
T
G
52
n
53
G
52
T
G
53
n
54
G
53
T
5MU
54
n
55
5MU
54
T
PSU
55
n
56
PSU
55
T
C
56
n
57
C
56
T
A
57
n
58
A
57
T
G
58
n
59
G
58
T
A
59
n
60
A
59
T
U
60
n
61
U
60
T
C
61
n
62
C
61
T
C
62
n
63
C
62
T
A
63
n
64
A
63
T
G
64
n
65
G
64
T
U
65
n
66
U
65
T
C
66
n
67
C
66
T
U
67
n
68
U
67
T
C
68
n
69
C
68
T
C
69
n
70
C
69
T
n
71
70
T
n
72
71
T
n
73
72
T
n
74
73
T
n
75
74
T
n
76
75
T
n
77
76
T
author_and_software_defined_assembly
PQS
3
trimeric
A
CYS
427
A
SG
CYS
427
1_555
A
ZN
490
D
ZN
ZN
1_555
A
CYS
432
A
SG
CYS
432
1_555
106.6
A
CYS
427
A
SG
CYS
427
1_555
A
ZN
490
D
ZN
ZN
1_555
A
CYS
458
A
SG
CYS
458
1_555
111.0
A
CYS
432
A
SG
CYS
432
1_555
A
ZN
490
D
ZN
ZN
1_555
A
CYS
458
A
SG
CYS
458
1_555
111.9
A
CYS
427
A
SG
CYS
427
1_555
A
ZN
490
D
ZN
ZN
1_555
A
CYS
461
A
SG
CYS
461
1_555
104.4
A
CYS
432
A
SG
CYS
432
1_555
A
ZN
490
D
ZN
ZN
1_555
A
CYS
461
A
SG
CYS
461
1_555
116.4
A
CYS
458
A
SG
CYS
458
1_555
A
ZN
490
D
ZN
ZN
1_555
A
CYS
461
A
SG
CYS
461
1_555
106.3
B
CYS
427
B
SG
CYS
427
1_555
B
ZN
490
H
ZN
ZN
1_555
B
CYS
432
B
SG
CYS
432
1_555
106.9
B
CYS
427
B
SG
CYS
427
1_555
B
ZN
490
H
ZN
ZN
1_555
B
CYS
458
B
SG
CYS
458
1_555
113.3
B
CYS
432
B
SG
CYS
432
1_555
B
ZN
490
H
ZN
ZN
1_555
B
CYS
458
B
SG
CYS
458
1_555
107.8
B
CYS
427
B
SG
CYS
427
1_555
B
ZN
490
H
ZN
ZN
1_555
B
CYS
461
B
SG
CYS
461
1_555
105.1
B
CYS
432
B
SG
CYS
432
1_555
B
ZN
490
H
ZN
ZN
1_555
B
CYS
461
B
SG
CYS
461
1_555
113.9
B
CYS
458
B
SG
CYS
458
1_555
B
ZN
490
H
ZN
ZN
1_555
B
CYS
461
B
SG
CYS
461
1_555
109.9
T
5MU
54
5-METHYLURIDINE 5'-MONOPHOSPHATE
C
5MU
55
U
T
PSU
55
PSEUDOURIDINE-5'-MONOPHOSPHATE
C
PSU
56
U
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ASP
29
A
N
ASP
29
A
O
VAL
38
A
O
VAL
38
A
N
GLN
64
A
N
GLN
64
A
O
LEU
133
A
O
LEU
133
A
N
VAL
140
A
N
VAL
140
A
O
PHE
156
A
O
PHE
156
A
N
HIS
165
A
N
HIS
165
A
O
HIS
255
A
O
HIS
255
A
N
GLY
260
A
N
GLY
260
A
O
THR
228
A
O
THR
228
A
N
TYR
231
A
N
TYR
231
A
O
TYR
210
A
O
TYR
210
A
N
GLU
215
A
N
GLU
215
A
O
ILE
195
A
O
ILE
195
A
N
LEU
198
A
N
LEU
198
A
O
VAL
447
A
O
VAL
447
A
N
ARG
445
A
N
ARG
445
A
O
VAL
472
A
O
VAL
472
A
N
PHE
473
A
N
PHE
473
A
O
ALA
422
A
O
ALA
422
A
N
LEU
423
A
N
LEU
423
A
O
ARG
405
A
O
ARG
405
A
N
ILE
72
A
N
ILE
72
A
O
ALA
107
A
O
ALA
107
A
N
VAL
108
A
N
VAL
108
A
O
ALA
92
A
O
ALA
92
A
N
THR
95
A
N
THR
95
B
O
VAL
93
B
O
VAL
93
B
N
ALA
97
B
N
ALA
97
B
O
GLU
100
B
O
GLU
100
B
N
ALA
107
B
N
ALA
107
B
O
ILE
72
B
O
ILE
72
A
N
PHE
244
A
N
PHE
244
A
O
LYS
252
A
O
LYS
252
A
N
HIS
323
A
N
HIS
323
A
O
VAL
290
A
O
VAL
290
A
N
VAL
291
A
N
VAL
291
A
O
PHE
346
A
O
PHE
346
A
N
GLU
349
A
N
GLU
349
A
O
VAL
361
A
O
VAL
361
A
N
LEU
362
A
N
LEU
362
A
O
GLU
370
A
O
GLU
370
B
N
ASP
29
B
N
ASP
29
B
O
VAL
38
B
O
VAL
38
B
N
GLN
64
B
N
GLN
64
B
O
LEU
133
B
O
LEU
133
B
N
VAL
140
B
N
VAL
140
B
O
PHE
156
B
O
PHE
156
B
N
HIS
165
B
N
HIS
165
B
O
HIS
255
B
O
HIS
255
B
N
GLY
260
B
N
GLY
260
B
O
THR
228
B
O
THR
228
B
N
TYR
231
B
N
TYR
231
B
O
TYR
210
B
O
TYR
210
B
N
GLU
215
B
N
GLU
215
B
O
ILE
195
B
O
ILE
195
B
N
LEU
198
B
N
LEU
198
B
O
VAL
447
B
O
VAL
447
B
N
ARG
445
B
N
ARG
445
B
O
VAL
472
B
O
VAL
472
B
N
PHE
473
B
N
PHE
473
B
O
ALA
422
B
O
ALA
422
B
N
PHE
244
B
N
PHE
244
B
O
LYS
252
B
O
LYS
252
B
N
HIS
323
B
N
HIS
323
B
O
VAL
290
B
O
VAL
290
B
N
VAL
291
B
N
VAL
291
B
O
PHE
346
B
O
PHE
346
B
N
GLU
349
B
N
GLU
349
B
O
VAL
361
B
O
VAL
361
B
N
LEU
362
B
N
LEU
362
B
O
GLU
370
B
O
GLU
370
1
A
CG
GLU
82
A
CG
GLU
82
0
Y
1
A
CD
GLU
82
A
CD
GLU
82
0
Y
1
A
OE1
GLU
82
A
OE1
GLU
82
0
Y
1
A
OE2
GLU
82
A
OE2
GLU
82
0
Y
1
A
CG
HIS
96
A
CG
HIS
96
0
Y
1
A
ND1
HIS
96
A
ND1
HIS
96
0
Y
1
A
CD2
HIS
96
A
CD2
HIS
96
0
Y
1
A
CE1
HIS
96
A
CE1
HIS
96
0
Y
1
A
NE2
HIS
96
A
NE2
HIS
96
0
Y
1
A
CG
GLU
100
A
CG
GLU
100
0
Y
1
A
CD
GLU
100
A
CD
GLU
100
0
Y
1
A
OE1
GLU
100
A
OE1
GLU
100
0
Y
1
A
OE2
GLU
100
A
OE2
GLU
100
0
Y
1
A
CG
GLU
103
A
CG
GLU
103
0
Y
1
A
CD
GLU
103
A
CD
GLU
103
0
Y
1
A
OE1
GLU
103
A
OE1
GLU
103
0
Y
1
A
OE2
GLU
103
A
OE2
GLU
103
0
Y
1
A
CG
MET
145
A
CG
MET
145
0
Y
1
A
SD
MET
145
A
SD
MET
145
0
Y
1
A
CE
MET
145
A
CE
MET
145
0
Y
1
A
NE
ARG
146
A
NE
ARG
146
0
Y
1
A
CZ
ARG
146
A
CZ
ARG
146
0
Y
1
A
NH1
ARG
146
A
NH1
ARG
146
0
Y
1
A
NH2
ARG
146
A
NH2
ARG
146
0
Y
1
A
CG
GLU
299
A
CG
GLU
299
0
Y
1
A
CD
GLU
299
A
CD
GLU
299
0
Y
1
A
OE1
GLU
299
A
OE1
GLU
299
0
Y
1
A
OE2
GLU
299
A
OE2
GLU
299
0
Y
1
A
CG
GLU
302
A
CG
GLU
302
0
Y
1
A
CD
GLU
302
A
CD
GLU
302
0
Y
1
A
OE1
GLU
302
A
OE1
GLU
302
0
Y
1
A
OE2
GLU
302
A
OE2
GLU
302
0
Y
1
A
NE
ARG
303
A
NE
ARG
303
0
Y
1
A
CZ
ARG
303
A
CZ
ARG
303
0
Y
1
A
NH1
ARG
303
A
NH1
ARG
303
0
Y
1
A
NH2
ARG
303
A
NH2
ARG
303
0
Y
1
A
CG
GLU
306
A
CG
GLU
306
0
Y
1
A
CD
GLU
306
A
CD
GLU
306
0
Y
1
A
OE1
GLU
306
A
OE1
GLU
306
0
Y
1
A
OE2
GLU
306
A
OE2
GLU
306
0
Y
1
A
CG
ASP
354
A
CG
ASP
354
0
Y
1
A
OD1
ASP
354
A
OD1
ASP
354
0
Y
1
A
OD2
ASP
354
A
OD2
ASP
354
0
Y
1
A
CG
LEU
355
A
CG
LEU
355
0
Y
1
A
CD1
LEU
355
A
CD1
LEU
355
0
Y
1
A
CD2
LEU
355
A
CD2
LEU
355
0
Y
1
A
CG
GLU
401
A
CG
GLU
401
0
Y
1
A
CD
GLU
401
A
CD
GLU
401
0
Y
1
A
OE1
GLU
401
A
OE1
GLU
401
0
Y
1
A
OE2
GLU
401
A
OE2
GLU
401
0
Y
1
A
CG
ARG
434
A
CG
ARG
434
0
Y
1
A
CD
ARG
434
A
CD
ARG
434
0
Y
1
A
NE
ARG
434
A
NE
ARG
434
0
Y
1
A
CZ
ARG
434
A
CZ
ARG
434
0
Y
1
A
NH1
ARG
434
A
NH1
ARG
434
0
Y
1
A
NH2
ARG
434
A
NH2
ARG
434
0
Y
1
A
CG
GLU
438
A
CG
GLU
438
0
Y
1
A
CD
GLU
438
A
CD
GLU
438
0
Y
1
A
OE1
GLU
438
A
OE1
GLU
438
0
Y
1
A
OE2
GLU
438
A
OE2
GLU
438
0
Y
1
A
CG
GLU
450
A
CG
GLU
450
0
Y
1
A
CD
GLU
450
A
CD
GLU
450
0
Y
1
A
OE1
GLU
450
A
OE1
GLU
450
0
Y
1
A
OE2
GLU
450
A
OE2
GLU
450
0
Y
1
A
CG
GLU
452
A
CG
GLU
452
0
Y
1
A
CD
GLU
452
A
CD
GLU
452
0
Y
1
A
OE1
GLU
452
A
OE1
GLU
452
0
Y
1
A
OE2
GLU
452
A
OE2
GLU
452
0
Y
1
A
NE
ARG
460
A
NE
ARG
460
0
Y
1
A
CZ
ARG
460
A
CZ
ARG
460
0
Y
1
A
NH1
ARG
460
A
NH1
ARG
460
0
Y
1
A
NH2
ARG
460
A
NH2
ARG
460
0
Y
1
B
CG
GLU
82
B
CG
GLU
82
0
Y
1
B
CD
GLU
82
B
CD
GLU
82
0
Y
1
B
OE1
GLU
82
B
OE1
GLU
82
0
Y
1
B
OE2
GLU
82
B
OE2
GLU
82
0
Y
1
B
CG
GLU
85
B
CG
GLU
85
0
Y
1
B
CD
GLU
85
B
CD
GLU
85
0
Y
1
B
OE1
GLU
85
B
OE1
GLU
85
0
Y
1
B
OE2
GLU
85
B
OE2
GLU
85
0
Y
1
B
CG
GLU
100
B
CG
GLU
100
0
Y
1
B
CD
GLU
100
B
CD
GLU
100
0
Y
1
B
OE1
GLU
100
B
OE1
GLU
100
0
Y
1
B
OE2
GLU
100
B
OE2
GLU
100
0
Y
1
B
CG
GLU
103
B
CG
GLU
103
0
Y
1
B
CD
GLU
103
B
CD
GLU
103
0
Y
1
B
OE1
GLU
103
B
OE1
GLU
103
0
Y
1
B
OE2
GLU
103
B
OE2
GLU
103
0
Y
1
B
CG
MET
145
B
CG
MET
145
0
Y
1
B
SD
MET
145
B
SD
MET
145
0
Y
1
B
CE
MET
145
B
CE
MET
145
0
Y
1
B
CG
ARG
146
B
CG
ARG
146
0
Y
1
B
CD
ARG
146
B
CD
ARG
146
0
Y
1
B
NE
ARG
146
B
NE
ARG
146
0
Y
1
B
CZ
ARG
146
B
CZ
ARG
146
0
Y
1
B
NH1
ARG
146
B
NH1
ARG
146
0
Y
1
B
NH2
ARG
146
B
NH2
ARG
146
0
Y
1
B
CG
GLU
302
B
CG
GLU
302
0
Y
1
B
CD
GLU
302
B
CD
GLU
302
0
Y
1
B
OE1
GLU
302
B
OE1
GLU
302
0
Y
1
B
OE2
GLU
302
B
OE2
GLU
302
0
Y
1
B
CG
GLU
306
B
CG
GLU
306
0
Y
1
B
CD
GLU
306
B
CD
GLU
306
0
Y
1
B
OE1
GLU
306
B
OE1
GLU
306
0
Y
1
B
OE2
GLU
306
B
OE2
GLU
306
0
Y
1
B
CG
GLU
356
B
CG
GLU
356
0
Y
1
B
CD
GLU
356
B
CD
GLU
356
0
Y
1
B
OE1
GLU
356
B
OE1
GLU
356
0
Y
1
B
OE2
GLU
356
B
OE2
GLU
356
0
Y
1
B
CG
GLU
401
B
CG
GLU
401
0
Y
1
B
CD
GLU
401
B
CD
GLU
401
0
Y
1
B
OE1
GLU
401
B
OE1
GLU
401
0
Y
1
B
OE2
GLU
401
B
OE2
GLU
401
0
Y
1
B
CG
ARG
434
B
CG
ARG
434
0
Y
1
B
CD
ARG
434
B
CD
ARG
434
0
Y
1
B
NE
ARG
434
B
NE
ARG
434
0
Y
1
B
CZ
ARG
434
B
CZ
ARG
434
0
Y
1
B
NH1
ARG
434
B
NH1
ARG
434
0
Y
1
B
NH2
ARG
434
B
NH2
ARG
434
0
Y
1
B
CG
GLU
438
B
CG
GLU
438
0
Y
1
B
CD
GLU
438
B
CD
GLU
438
0
Y
1
B
OE1
GLU
438
B
OE1
GLU
438
0
Y
1
B
OE2
GLU
438
B
OE2
GLU
438
0
Y
1
B
CG
GLU
450
B
CG
GLU
450
0
Y
1
B
CD
GLU
450
B
CD
GLU
450
0
Y
1
B
OE1
GLU
450
B
OE1
GLU
450
0
Y
1
B
OE2
GLU
450
B
OE2
GLU
450
0
Y
1
B
CG
GLU
452
B
CG
GLU
452
0
Y
1
B
CD
GLU
452
B
CD
GLU
452
0
Y
1
B
OE1
GLU
452
B
OE1
GLU
452
0
Y
1
B
OE2
GLU
452
B
OE2
GLU
452
0
Y
1
B
NE
ARG
460
B
NE
ARG
460
0
Y
1
B
CZ
ARG
460
B
CZ
ARG
460
0
Y
1
B
NH1
ARG
460
B
NH1
ARG
460
0
Y
1
B
NH2
ARG
460
B
NH2
ARG
460
0
Y
1
B
S
P5A
1478
I
S
P5A
1
1
N
1
A
MET
1
A
MET
1
1
Y
1
A
ALA
2
A
ALA
2
1
Y
1
A
LYS
3
A
LYS
3
1
Y
1
A
GLU
4
A
GLU
4
1
Y
1
A
LYS
5
A
LYS
5
0
Y
1
B
MET
1
B
MET
1
1
Y
1
B
ALA
2
B
ALA
2
1
Y
1
B
LYS
3
B
LYS
3
1
Y
1
B
GLU
4
B
GLU
4
1
Y
1
B
LYS
5
B
LYS
5
0
Y
1
T
C
1
C
C
1
1
Y
1
T
G
2
C
G
2
1
Y
1
T
G
3
C
G
3
1
Y
1
T
C
70
C
C
71
1
Y
1
T
C
71
C
C
72
1
Y
1
T
G
72
C
G
73
1
Y
1
T
A
73
C
A
74
1
Y
1
T
C
74
C
C
75
1
Y
1
T
C
75
C
C
76
1
Y
1
T
A
76
C
A
77
1
Y
1
8.67
1.30
114.00
122.67
T
T
T
N9
C1'
C2'
G
G
G
19
19
19
N
1
10.16
1.30
114.00
124.16
T
T
T
N9
C1'
C2'
G
G
G
35
35
35
N
1
8.59
1.30
114.00
122.59
T
T
T
N9
C1'
C2'
G
G
G
37
37
37
N
1
A
ASP
13
-160.37
89.42
1
A
ALA
81
-45.68
-75.09
1
A
ARG
125
-140.51
-35.75
1
A
ARG
146
60.35
101.24
1
A
PHE
150
71.16
-52.50
1
A
LEU
249
64.34
-11.72
1
A
TYR
296
-169.89
-167.52
1
A
ARG
327
-5.23
97.61
1
A
THR
441
72.21
-10.73
1
A
ALA
451
-45.62
150.15
1
A
TYR
467
68.15
-20.59
1
A
ALA
474
174.71
160.17
1
B
LEU
7
-177.16
121.73
1
B
ASP
13
-160.91
89.99
1
B
ALA
81
-46.15
-74.75
1
B
ARG
125
-131.72
-48.86
1
B
ARG
146
59.36
101.85
1
B
PHE
150
71.70
-53.18
1
B
LEU
249
59.63
5.92
1
B
TRP
263
-69.30
0.30
1
B
ARG
327
-38.54
117.90
1
B
GLN
359
-125.52
-169.93
1
B
LEU
377
-27.98
-52.19
1
B
THR
441
77.11
-14.64
1
B
TYR
467
71.82
-15.35
1
B
ALA
474
173.88
160.27
PROTEIN_REP.PARAM
WATER_REP.PARAM
ION.PARAM
DNA_RNA_REP.PARAM
0.242
0.210
0.210
2.85
20
2797
54989
5.0
98.0
RANDOM
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1HC7 (LIGAND FREE PROLYL-TRNA SYNTHETASE)
FLAT MODEL
50
0.34
2.85
20
32
9192
81
1439
7640
0.0065
1.310
2.75
2.5
4.50
3.0
4.28
3.5
6.76
4.5
2.850
20.000
1H4S
221758
0.08400
1
4.000
98.2
0.29800
2.85
2.92
2.200
1
2.80
96.1
refinement
CNS
0.4
data reduction
MOSFLM
data scaling
SCALA
phasing
AMoRE
Prolyl-tRNA synthetase from Thermus thermophilus complexed with tRNApro(CGG) and a prolyl-adenylate analogue
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
3
N
N
4
N
N
5
N
N
5
N
N
6
N
N
6
N
N
6
N
N
HOMODIMERIC PROLYL-TRNA SYNTHETASE AND THE
RNA CHAIN
A
PRO
9
A
PRO
9
HELX_P
A
PHE
14
A
PHE
14
1
1
6
A
ASP
13
A
ASP
13
HELX_P
A
ALA
25
A
ALA
25
1
2
13
A
ARG
40
A
ARG
40
HELX_P
A
THR
61
A
THR
61
1
3
22
A
MET
74
A
MET
74
HELX_P
A
LYS
79
A
LYS
79
1
4
6
A
GLU
80
A
GLU
80
HELX_P
A
SER
88
A
SER
88
1
5
9
A
SER
112
A
SER
112
HELX_P
A
ILE
124
A
ILE
124
1
6
13
A
TRP
127
A
TRP
127
HELX_P
A
LEU
130
A
LEU
130
5
7
4
A
THR
167
A
THR
167
HELX_P
A
TYR
189
A
TYR
189
1
8
23
A
THR
200
A
THR
200
HELX_P
A
LYS
204
A
LYS
204
5
9
5
A
GLU
234
A
GLU
234
HELX_P
A
ASP
241
A
ASP
241
1
10
8
A
TRP
263
A
TRP
263
HELX_P
A
GLY
274
A
GLY
274
1
11
12
A
SER
300
A
SER
300
HELX_P
A
GLN
318
A
GLN
318
1
12
19
A
THR
331
A
THR
331
HELX_P
A
LEU
341
A
LEU
341
1
13
11
A
LYS
353
A
LYS
353
HELX_P
A
GLY
358
A
GLY
358
1
14
6
A
ALA
375
A
ALA
375
HELX_P
A
HIS
403
A
HIS
403
1
15
29
A
THR
409
A
THR
409
HELX_P
A
GLY
420
A
GLY
420
1
16
12
A
ASP
429
A
ASP
429
HELX_P
A
THR
441
A
THR
441
1
17
13
B
PRO
9
B
PRO
9
HELX_P
B
PHE
14
B
PHE
14
1
18
6
B
ASP
13
B
ASP
13
HELX_P
B
ALA
25
B
ALA
25
1
19
13
B
ARG
40
B
ARG
40
HELX_P
B
THR
61
B
THR
61
1
20
22
B
MET
74
B
MET
74
HELX_P
B
LYS
79
B
LYS
79
1
21
6
B
GLU
80
B
GLU
80
HELX_P
B
SER
88
B
SER
88
1
22
9
B
SER
112
B
SER
112
HELX_P
B
ILE
124
B
ILE
124
1
23
13
B
TRP
127
B
TRP
127
HELX_P
B
LEU
130
B
LEU
130
5
24
4
B
THR
167
B
THR
167
HELX_P
B
TYR
189
B
TYR
189
1
25
23
B
THR
200
B
THR
200
HELX_P
B
LYS
204
B
LYS
204
5
26
5
B
GLU
234
B
GLU
234
HELX_P
B
PHE
240
B
PHE
240
1
27
7
B
TRP
263
B
TRP
263
HELX_P
B
GLY
274
B
GLY
274
1
28
12
B
SER
300
B
SER
300
HELX_P
B
GLN
318
B
GLN
318
1
29
19
B
THR
331
B
THR
331
HELX_P
B
LYS
342
B
LYS
342
1
30
12
B
GLY
351
B
GLY
351
HELX_P
B
GLY
357
B
GLY
357
1
31
7
B
ALA
376
B
ALA
376
HELX_P
B
ASP
402
B
ASP
402
1
32
27
B
THR
409
B
THR
409
HELX_P
B
GLY
420
B
GLY
420
1
33
12
B
ASP
429
B
ASP
429
HELX_P
B
THR
441
B
THR
441
1
34
13
covale
1.596
both
T
G
53
C
O3'
G
54
1_555
T
5MU
54
C
P
5MU
55
1_555
covale
1.608
both
T
5MU
54
C
O3'
5MU
55
1_555
T
PSU
55
C
P
PSU
56
1_555
covale
1.610
both
T
PSU
55
C
O3'
PSU
56
1_555
T
C
56
C
P
C
57
1_555
metalc
2.361
A
CYS
427
A
SG
CYS
427
1_555
A
ZN
490
D
ZN
ZN
1_555
metalc
2.308
A
CYS
432
A
SG
CYS
432
1_555
A
ZN
490
D
ZN
ZN
1_555
metalc
2.336
A
CYS
458
A
SG
CYS
458
1_555
A
ZN
490
D
ZN
ZN
1_555
metalc
2.372
A
CYS
461
A
SG
CYS
461
1_555
A
ZN
490
D
ZN
ZN
1_555
metalc
2.331
B
CYS
427
B
SG
CYS
427
1_555
B
ZN
490
H
ZN
ZN
1_555
metalc
2.331
B
CYS
432
B
SG
CYS
432
1_555
B
ZN
490
H
ZN
ZN
1_555
metalc
2.345
B
CYS
458
B
SG
CYS
458
1_555
B
ZN
490
H
ZN
ZN
1_555
metalc
2.361
B
CYS
461
B
SG
CYS
461
1_555
B
ZN
490
H
ZN
ZN
1_555
hydrog
WATSON-CRICK
T
G
4
C
N1
G
4
1_555
T
C
69
C
N3
C
70
1_555
hydrog
WATSON-CRICK
T
G
4
C
N2
G
4
1_555
T
C
69
C
O2
C
70
1_555
hydrog
WATSON-CRICK
T
G
4
C
O6
G
4
1_555
T
C
69
C
N4
C
70
1_555
hydrog
WATSON-CRICK
T
G
5
C
N1
G
5
1_555
T
C
68
C
N3
C
69
1_555
hydrog
WATSON-CRICK
T
G
5
C
N2
G
5
1_555
T
C
68
C
O2
C
69
1_555
hydrog
WATSON-CRICK
T
G
5
C
O6
G
5
1_555
T
C
68
C
N4
C
69
1_555
hydrog
WATSON-CRICK
T
A
6
C
N1
A
6
1_555
T
U
67
C
N3
U
68
1_555
hydrog
WATSON-CRICK
T
A
6
C
N6
A
6
1_555
T
U
67
C
O4
U
68
1_555
hydrog
WATSON-CRICK
T
G
7
C
N1
G
7
1_555
T
C
66
C
N3
C
67
1_555
hydrog
WATSON-CRICK
T
G
7
C
N2
G
7
1_555
T
C
66
C
O2
C
67
1_555
hydrog
WATSON-CRICK
T
G
7
C
O6
G
7
1_555
T
C
66
C
N4
C
67
1_555
hydrog
REVERSED HOOGSTEEN
T
U
8
C
N3
U
8
1_555
T
A
14
C
N7
A
14
1_555
hydrog
REVERSED HOOGSTEEN
T
U
8
C
O2
U
8
1_555
T
A
14
C
N6
A
14
1_555
hydrog
A-C MISPAIR
T
A
9
C
N7
A
9
1_555
T
C
23
C
N4
C
24
1_555
hydrog
WATSON-CRICK
T
G
10
C
N1
G
10
1_555
T
C
25
C
N3
C
26
1_555
hydrog
WATSON-CRICK
T
G
10
C
N2
G
10
1_555
T
C
25
C
O2
C
26
1_555
hydrog
WATSON-CRICK
T
G
10
C
O6
G
10
1_555
T
C
25
C
N4
C
26
1_555
hydrog
G-G MISPAIR
T
G
10
C
O6
G
10
1_555
T
G
45
C
N2
G
46
1_555
hydrog
WATSON-CRICK
T
C
11
C
N3
C
11
1_555
T
G
24
C
N1
G
25
1_555
hydrog
WATSON-CRICK
T
C
11
C
N4
C
11
1_555
T
G
24
C
O6
G
25
1_555
hydrog
WATSON-CRICK
T
C
11
C
O2
C
11
1_555
T
G
24
C
N2
G
25
1_555
hydrog
WATSON-CRICK
T
G
12
C
N1
G
12
1_555
T
C
23
C
N3
C
24
1_555
hydrog
WATSON-CRICK
T
G
12
C
N2
G
12
1_555
T
C
23
C
O2
C
24
1_555
hydrog
WATSON-CRICK
T
G
12
C
O6
G
12
1_555
T
C
23
C
N4
C
24
1_555
hydrog
WATSON-CRICK
T
C
13
C
N3
C
13
1_555
T
G
22
C
N1
G
23
1_555
hydrog
WATSON-CRICK
T
C
13
C
N4
C
13
1_555
T
G
22
C
O6
G
23
1_555
hydrog
WATSON-CRICK
T
C
13
C
O2
C
13
1_555
T
G
22
C
N2
G
23
1_555
hydrog
A-A MISPAIR
T
A
14
C
N6
A
14
1_555
T
A
21
C
N3
A
22
1_555
hydrog
REVERSED WATSON-CRICK
T
G
15
C
N1
G
15
1_555
T
C
48
C
O2
C
49
1_555
hydrog
REVERSED WATSON-CRICK
T
G
15
C
N2
G
15
1_555
T
C
48
C
N3
C
49
1_555
hydrog
G-PSU MISPAIR
T
G
18
C
N1
G
19
1_555
T
PSU
55
C
O4
PSU
56
1_555
hydrog
WATSON-CRICK
T
G
19
C
N1
G
20
1_555
T
C
56
C
N3
C
57
1_555
hydrog
WATSON-CRICK
T
G
19
C
N2
G
20
1_555
T
C
56
C
O2
C
57
1_555
hydrog
WATSON-CRICK
T
G
19
C
O6
G
20
1_555
T
C
56
C
N4
C
57
1_555
hydrog
TYPE_7_PAIR
T
G
22
C
N7
G
23
1_555
T
G
46
C
N1
G
47
1_555
hydrog
TYPE_7_PAIR
T
G
22
C
O6
G
23
1_555
T
G
46
C
N2
G
47
1_555
hydrog
TYPE_8_PAIR
T
A
26
C
N1
A
27
1_555
T
G
44
C
N1
G
45
1_555
hydrog
TYPE_8_PAIR
T
A
26
C
N6
A
27
1_555
T
G
44
C
O6
G
45
1_555
hydrog
WATSON-CRICK
T
C
27
C
N3
C
28
1_555
T
G
43
C
N1
G
44
1_555
hydrog
WATSON-CRICK
T
C
27
C
N4
C
28
1_555
T
G
43
C
O6
G
44
1_555
hydrog
WATSON-CRICK
T
C
27
C
O2
C
28
1_555
T
G
43
C
N2
G
44
1_555
hydrog
WATSON-CRICK
T
C
28
C
N3
C
29
1_555
T
G
42
C
N1
G
43
1_555
hydrog
WATSON-CRICK
T
C
28
C
N4
C
29
1_555
T
G
42
C
O6
G
43
1_555
hydrog
WATSON-CRICK
T
C
28
C
O2
C
29
1_555
T
G
42
C
N2
G
43
1_555
hydrog
WATSON-CRICK
T
U
29
C
N3
U
30
1_555
T
A
41
C
N1
A
42
1_555
hydrog
WATSON-CRICK
T
U
29
C
O4
U
30
1_555
T
A
41
C
N6
A
42
1_555
hydrog
WATSON-CRICK
T
C
30
C
N3
C
31
1_555
T
G
40
C
N1
G
41
1_555
hydrog
WATSON-CRICK
T
C
30
C
N4
C
31
1_555
T
G
40
C
O6
G
41
1_555
hydrog
WATSON-CRICK
T
C
30
C
O2
C
31
1_555
T
G
40
C
N2
G
41
1_555
hydrog
WATSON-CRICK
T
G
31
C
N1
G
32
1_555
T
C
39
C
N3
C
40
1_555
hydrog
WATSON-CRICK
T
G
31
C
N2
G
32
1_555
T
C
39
C
O2
C
40
1_555
hydrog
WATSON-CRICK
T
G
31
C
O6
G
32
1_555
T
C
39
C
N4
C
40
1_555
hydrog
WATSON-CRICK
T
U
32
C
N3
U
33
1_555
T
A
38
C
N1
A
39
1_555
hydrog
WATSON-CRICK
T
U
32
C
O4
U
33
1_555
T
A
38
C
N6
A
39
1_555
hydrog
TYPE_28_PAIR
T
G
49
C
N1
G
50
1_555
T
U
65
C
O2
U
66
1_555
hydrog
TYPE_28_PAIR
T
G
49
C
O6
G
50
1_555
T
U
65
C
N3
U
66
1_555
hydrog
WATSON-CRICK
T
C
50
C
N3
C
51
1_555
T
G
64
C
N1
G
65
1_555
hydrog
WATSON-CRICK
T
C
50
C
N4
C
51
1_555
T
G
64
C
O6
G
65
1_555
hydrog
WATSON-CRICK
T
C
50
C
O2
C
51
1_555
T
G
64
C
N2
G
65
1_555
hydrog
WATSON-CRICK
T
U
51
C
N3
U
52
1_555
T
A
63
C
N1
A
64
1_555
hydrog
WATSON-CRICK
T
U
51
C
O4
U
52
1_555
T
A
63
C
N6
A
64
1_555
hydrog
WATSON-CRICK
T
G
52
C
N1
G
53
1_555
T
C
62
C
N3
C
63
1_555
hydrog
WATSON-CRICK
T
G
52
C
N2
G
53
1_555
T
C
62
C
O2
C
63
1_555
hydrog
WATSON-CRICK
T
G
52
C
O6
G
53
1_555
T
C
62
C
N4
C
63
1_555
hydrog
WATSON-CRICK
T
G
53
C
N1
G
54
1_555
T
C
61
C
N3
C
62
1_555
hydrog
WATSON-CRICK
T
G
53
C
N2
G
54
1_555
T
C
61
C
O2
C
62
1_555
hydrog
WATSON-CRICK
T
G
53
C
O6
G
54
1_555
T
C
61
C
N4
C
62
1_555
hydrog
5MU-G MISPAIR
T
5MU
54
C
N3
5MU
55
1_555
T
G
58
C
N7
G
59
1_555
AMINOACYL-TRNA SYNTHETASE
AMINOACYL-TRNA SYNTHETASE, ATP + L-PROLINE + TRNA(PRO) AMP + PPI + L-PROLYL-TRNA(PRO), CLASS II AMINOACYL-TRNA SYNTHETASE
A
LEU
130
A
LEU
130
1
A
PRO
131
A
PRO
131
0.08
B
LEU
130
B
LEU
130
1
B
PRO
131
B
PRO
131
-0.10
given
-0.336459
0.000265
-0.941698
-0.004070
-0.999991
0.001173
-0.941689
0.004228
0.336457
100.56740
217.80029
70.39110
1H4S
PDB
1
1H4S
1H4S
PDB
2
1H4S
1
477
1H4S
1
477
1H4S
A
1
1
477
1
477
1H4S
1
477
1H4S
B
1
1
477
1
76
1H4S
1
76
1H4S
T
2
1
77
2
11
6
2
2
5
2
10
2
5
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
A
ALA
28
A
ALA
28
A
TYR
30
A
TYR
30
A
ILE
37
A
ILE
37
A
VAL
39
A
VAL
39
A
GLN
64
A
GLN
64
A
ASN
65
A
ASN
65
A
GLN
132
A
GLN
132
A
VAL
141
A
VAL
141
A
GLU
155
A
GLU
155
A
HIS
165
A
HIS
165
A
HIS
255
A
HIS
255
A
SER
262
A
SER
262
A
ALA
223
A
ALA
223
A
GLY
233
A
GLY
233
A
TYR
210
A
TYR
210
A
LEU
217
A
LEU
217
A
ILE
195
A
ILE
195
A
LEU
198
A
LEU
198
A
THR
443
A
THR
443
A
PRO
448
A
PRO
448
A
VAL
471
A
VAL
471
A
ALA
474
A
ALA
474
A
PHE
421
A
PHE
421
A
ALA
424
A
ALA
424
A
THR
404
A
THR
404
A
LYS
406
A
LYS
406
A
PHE
71
A
PHE
71
A
PRO
73
A
PRO
73
A
GLU
100
A
GLU
100
A
VAL
108
A
VAL
108
A
ALA
92
A
ALA
92
A
ALA
97
A
ALA
97
B
ALA
92
B
ALA
92
B
ALA
97
B
ALA
97
B
GLU
100
B
GLU
100
B
VAL
108
B
VAL
108
B
PHE
71
B
PHE
71
B
PRO
73
B
PRO
73
A
LYS
243
A
LYS
243
A
GLN
245
A
GLN
245
A
VAL
251
A
VAL
251
A
TYR
253
A
TYR
253
A
LEU
279
A
LEU
279
A
VAL
280
A
VAL
280
A
LYS
342
A
LYS
342
A
GLY
343
A
GLY
343
A
VAL
322
A
VAL
322
A
LEU
324
A
LEU
324
A
VAL
290
A
VAL
290
A
PRO
294
A
PRO
294
A
PHE
346
A
PHE
346
A
LEU
350
A
LEU
350
A
GLN
359
A
GLN
359
A
SER
364
A
SER
364
A
LYS
369
A
LYS
369
A
PRO
373
A
PRO
373
B
ALA
28
B
ALA
28
B
TYR
30
B
TYR
30
B
ILE
37
B
ILE
37
B
VAL
39
B
VAL
39
B
GLN
64
B
GLN
64
B
ASN
65
B
ASN
65
B
GLN
132
B
GLN
132
B
VAL
141
B
VAL
141
B
GLU
155
B
GLU
155
B
HIS
165
B
HIS
165
B
HIS
255
B
HIS
255
B
SER
262
B
SER
262
B
ALA
223
B
ALA
223
B
GLY
233
B
GLY
233
B
TYR
210
B
TYR
210
B
LEU
217
B
LEU
217
B
ILE
195
B
ILE
195
B
LEU
198
B
LEU
198
B
THR
443
B
THR
443
B
PRO
448
B
PRO
448
B
VAL
471
B
VAL
471
B
ALA
474
B
ALA
474
B
ALA
422
B
ALA
422
B
ALA
424
B
ALA
424
B
LYS
243
B
LYS
243
B
GLN
245
B
GLN
245
B
VAL
251
B
VAL
251
B
TYR
253
B
TYR
253
B
VAL
322
B
VAL
322
B
LEU
324
B
LEU
324
B
VAL
290
B
VAL
290
B
PRO
294
B
PRO
294
B
PHE
346
B
PHE
346
B
LEU
350
B
LEU
350
B
GLN
359
B
GLN
359
B
SER
364
B
SER
364
B
LYS
369
B
LYS
369
B
PRO
373
B
PRO
373
BINDING SITE FOR RESIDUE ZN A 490
A
ZN
490
Software
4
BINDING SITE FOR RESIDUE SO4 A1480
Software
3
BINDING SITE FOR RESIDUE SO4 A1481
Software
3
BINDING SITE FOR RESIDUE ZN B 490
B
ZN
490
Software
4
BINDING SITE FOR RESIDUE SO4 B1480
Software
5
BINDING SITE FOR RESIDUE SO4 B1481
Software
3
BINDING SITE FOR RESIDUE PSD A1478
Software
22
BINDING SITE FOR RESIDUE PSD B1478
Software
21
A
CYS
427
A
CYS
427
4
1_555
A
CYS
432
A
CYS
432
4
1_555
A
CYS
458
A
CYS
458
4
1_555
A
CYS
461
A
CYS
461
4
1_555
A
LYS
199
A
LYS
199
3
1_555
A
GLN
225
A
GLN
225
3
1_555
A
ARG
445
A
ARG
445
3
1_555
A
ARG
312
A
ARG
312
3
1_555
A
HIS
323
A
HIS
323
3
1_555
A
LEU
324
A
LEU
324
3
1_555
B
CYS
427
B
CYS
427
4
1_555
B
CYS
432
B
CYS
432
4
1_555
B
CYS
458
B
CYS
458
4
1_555
B
CYS
461
B
CYS
461
4
1_555
B
LYS
199
B
LYS
199
5
1_555
B
GLN
225
B
GLN
225
5
1_555
B
ARG
264
B
ARG
264
5
1_555
B
ARG
445
B
ARG
445
5
1_555
B
TYR
477
B
TYR
477
5
1_555
B
ARG
312
B
ARG
312
3
1_555
B
HIS
323
B
HIS
323
3
1_555
B
LEU
324
B
LEU
324
3
1_555
A
THR
111
A
THR
111
22
1_555
A
GLU
113
A
GLU
113
22
1_555
A
ARG
142
A
ARG
142
22
1_555
A
GLU
144
A
GLU
144
22
1_555
A
PHE
150
A
PHE
150
22
1_555
A
LEU
151
A
LEU
151
22
1_555
A
ARG
152
A
ARG
152
22
1_555
A
THR
153
A
THR
153
22
1_555
A
PHE
156
A
PHE
156
22
1_555
A
TRP
158
A
TRP
158
22
1_555
A
GLU
160
A
GLU
160
22
1_555
A
PHE
205
A
PHE
205
22
1_555
A
GLN
225
A
GLN
225
22
1_555
A
GLY
227
A
GLY
227
22
1_555
A
THR
228
A
THR
228
22
1_555
A
HIS
230
A
HIS
230
22
1_555
A
SER
258
A
SER
258
22
1_555
A
TRP
259
A
TRP
259
22
1_555
A
GLY
260
A
GLY
260
22
1_555
A
SER
262
A
SER
262
22
1_555
A
ARG
264
A
ARG
264
22
1_555
A
HOH
2023
L
HOH
22
1_555
B
THR
111
B
THR
111
21
1_555
B
GLU
113
B
GLU
113
21
1_555
B
ARG
142
B
ARG
142
21
1_555
B
GLU
144
B
GLU
144
21
1_555
B
PHE
150
B
PHE
150
21
1_555
B
LEU
151
B
LEU
151
21
1_555
B
ARG
152
B
ARG
152
21
1_555
B
THR
153
B
THR
153
21
1_555
B
PHE
156
B
PHE
156
21
1_555
B
TRP
158
B
TRP
158
21
1_555
B
GLU
160
B
GLU
160
21
1_555
B
PHE
205
B
PHE
205
21
1_555
B
GLN
225
B
GLN
225
21
1_555
B
GLY
227
B
GLY
227
21
1_555
B
THR
228
B
THR
228
21
1_555
B
HIS
230
B
HIS
230
21
1_555
B
SER
258
B
SER
258
21
1_555
B
TRP
259
B
TRP
259
21
1_555
B
GLY
260
B
GLY
260
21
1_555
B
SER
262
B
SER
262
21
1_555
B
ARG
264
B
ARG
264
21
1_555
96
P 43 21 2