0.011879 0.000000 0.000000 0.000000 0.009498 0.000000 0.000000 0.000000 0.021427 0.00000 0.00000 0.00000 Spyrida, A. Matzen, C. Lanio, T. Jeltsch, A. Simoncsits, A. Athanasiadis, A. Scheuring-Vanamee, E. Kokkinidis, M. Pingoud, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 84.180 105.280 46.670 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N C N 199 N N N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N S N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N MG N 237 N N N 238 S C N 239 N C N 240 N O N 241 N C Y 242 N C Y 243 N C Y 244 N C Y 245 N C Y 246 N C Y 247 N C N 248 N O N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N N N 261 S C N 262 N C N 263 N O N 264 N C N 265 N C N 266 N C N 267 N O N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N N N 278 S C N 279 N C N 280 N O N 281 N C N 282 N O N 283 N O N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 R C N 296 N O N 297 N C N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N N N 309 S C N 310 N C N 311 N O N 312 N C Y 313 N C Y 314 N C Y 315 N C Y 316 N N Y 317 N C Y 318 N C Y 319 N C Y 320 N C Y 321 N C N 322 N O N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N N N 336 S C N 337 N C N 338 N O N 339 N C Y 340 N C Y 341 N C Y 342 N C Y 343 N C Y 344 N C Y 345 N C N 346 N O N 347 N O N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N N N 360 S C N 361 N C N 362 N O N 363 N C N 364 N C N 365 N C N 366 N O N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing Y 235 N doub Y 236 N sing Y 237 N sing N 238 N sing Y 239 N doub N 240 N sing Y 241 N doub N 242 N sing Y 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing Y 304 N doub Y 305 N sing Y 306 N sing N 307 N sing Y 308 N doub Y 309 N sing Y 310 N sing N 311 N sing Y 312 N sing Y 313 N doub N 314 N sing Y 315 N doub N 316 N sing Y 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N doub N 328 N sing N 329 N sing N 330 N sing N 331 N sing Y 332 N doub Y 333 N sing Y 334 N sing N 335 N sing Y 336 N doub N 337 N sing Y 338 N doub N 339 N sing Y 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N doub N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 331 395 10.1016/S0022-2836(03)00692-2 12888347 Structural and Biochemical Characterization of a New Mg(2+) Binding Site Near Tyr94 in the Restriction Endonuclease PvuII. 2003 US Nat.Struct.Biol. NSBIEW 2024 1072-8368 1 469 10.1038/NSB0794-469 7664066 Crystal Structure of PvuII Endonuclease Reveals Extensive Structural Homologies to EcoRV 1994 10.2210/pdb1h56/pdb pdb_00001h56 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 293.0 1 IMAGE PLATE 1997-10-15 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 0.92 1.0 X11 EMBL/DESY, HAMBURG 0.92 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 18239.799 TYPE II RESTRICTION ENZYME PVUII 3.1.21.4 2 man polymer 24.305 MAGNESIUM ION 2 syn non-polymer 18.015 water 68 nat water ENDONUCLEASE PVUII, R.PVUII no no SHPDLNKLLELWPHIQEYQDLALKHGINDIFQDNGGKLLQVLLITGLTVLPGREGNDAVDNAGQEYELKSINIDLTKGFS THHHMNPVIIAKYRQVPWIFAIYRGIAIEAIYRLEPKDLEFYYDKWERKWYSDGHKDINNPKIPVKYVMEHGTKIY SHPDLNKLLELWPHIQEYQDLALKHGINDIFQDNGGKLLQVLLITGLTVLPGREGNDAVDNAGQEYELKSINIDLTKGFS THHHMNPVIIAKYRQVPWIFAIYRGIAIEAIYRLEPKDLEFYYDKWERKWYSDGHKDINNPKIPVKYVMEHGTKIY A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 585 PROTEUS VULGARIS 634468 ESCHERICHIA COLI HB101 PPUC18 PPVU1 1 2.83 56.61 5.00 pH 5.00 diffrn_source chem_comp_atom chem_comp_bond database_2 pdbx_database_status pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Database references Derived calculations Non-polymer description Other Source and taxonomy Version format compliance Data collection Data collection Database references Derived calculations Other Refinement description 1 0 2003-08-07 1 1 2015-04-15 1 2 2019-07-24 1 3 2023-12-13 _diffrn_source.pdbx_synchrotron_site _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_sf _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id HIGH RESOLUTION STRUCTURE OF THE PVUII ENDONCULEASE/COGNATE DNA COMPLEX AT PH 4.6 PVUII ENDONUCLEASE/COGNATE DNA COMPLEX ( GLUTARALDEHYDE-CROSSLINKED CRYSTAL) AT PH 7. 5 WITH TWO CALCIUM IONS ATEACH ACTIVE SITE CRYSTAL STRUCTURE OF THE PVUII ENDONUCLEASE WITH PR3+ ANDSO4 IONS BOUND IN THE ACTIVE SITE AT 2.05A. STRUCTURE OF THE Y94F MUTANT OF THE RESTRICTIONENDONUCLEASE PVUII PVUII ENDONUCLEASE COMPLEXED WITH COGNATE DEOXYRIBONUCLEIC ACID PVUII RESTRICTION ENDONUCLEASE PVUII ENDONUCLEASE COMPLEXED TO AN IODINATED COGNATE DEOXYRIBONUCLEIC ACID D34G MUTANT OF PVUII ENDONUCLEASE COMPLEXED WITH COGNATE DEOXYRIBONUCLEIC ACID SHOWS THAT ASP34 IS DIRECTLY INVOLVED IN DEOXYRIBONUCLEIC ACID RECOGNITION AND INDIRECTLY INVOLVED IN CATALYSIS PDBE Y PDBE 2001-05-20 REL REL MG MAGNESIUM ION HOH water 1PVU PDB ENTRY 1PVU PDB experimental model MG 1 2 MG MG 1 A MG 1 2 MG MG 1 B HOH 2001 3 HOH HOH 2001 A HOH 2002 3 HOH HOH 2002 A HOH 2003 3 HOH HOH 2003 A HOH 2004 3 HOH HOH 2004 A HOH 2005 3 HOH HOH 2005 A HOH 2006 3 HOH HOH 2006 A HOH 2007 3 HOH HOH 2007 A HOH 2008 3 HOH HOH 2008 A HOH 2009 3 HOH HOH 2009 A HOH 2010 3 HOH HOH 2010 A HOH 2011 3 HOH HOH 2011 A HOH 2012 3 HOH HOH 2012 A HOH 2013 3 HOH HOH 2013 A HOH 2014 3 HOH HOH 2014 A HOH 2015 3 HOH HOH 2015 A HOH 2016 3 HOH HOH 2016 A HOH 2017 3 HOH HOH 2017 A HOH 2018 3 HOH HOH 2018 A HOH 2019 3 HOH HOH 2019 A HOH 2020 3 HOH HOH 2020 A HOH 2021 3 HOH HOH 2021 A HOH 2022 3 HOH HOH 2022 A HOH 2023 3 HOH HOH 2023 A HOH 2024 3 HOH HOH 2024 A HOH 2025 3 HOH HOH 2025 A HOH 2026 3 HOH HOH 2026 A HOH 2027 3 HOH HOH 2027 A HOH 2028 3 HOH HOH 2028 A HOH 2029 3 HOH HOH 2029 A HOH 2030 3 HOH HOH 2030 A HOH 2031 3 HOH HOH 2031 A HOH 2032 3 HOH HOH 2032 A HOH 2033 3 HOH HOH 2033 A HOH 2034 3 HOH HOH 2034 A HOH 2035 3 HOH HOH 2035 A HOH 2036 3 HOH HOH 2036 A HOH 2037 3 HOH HOH 2037 A HOH 2038 3 HOH HOH 2038 A HOH 2039 3 HOH HOH 2039 A HOH 2040 3 HOH HOH 2040 A HOH 2041 3 HOH HOH 2041 A HOH 2001 3 HOH HOH 2001 B HOH 2002 3 HOH HOH 2002 B HOH 2003 3 HOH HOH 2003 B HOH 2004 3 HOH HOH 2004 B HOH 2005 3 HOH HOH 2005 B HOH 2006 3 HOH HOH 2006 B HOH 2007 3 HOH HOH 2007 B HOH 2008 3 HOH HOH 2008 B HOH 2009 3 HOH HOH 2009 B HOH 2010 3 HOH HOH 2010 B HOH 2011 3 HOH HOH 2011 B HOH 2012 3 HOH HOH 2012 B HOH 2013 3 HOH HOH 2013 B HOH 2014 3 HOH HOH 2014 B HOH 2015 3 HOH HOH 2015 B HOH 2016 3 HOH HOH 2016 B HOH 2017 3 HOH HOH 2017 B HOH 2018 3 HOH HOH 2018 B HOH 2019 3 HOH HOH 2019 B HOH 2020 3 HOH HOH 2020 B HOH 2021 3 HOH HOH 2021 B HOH 2022 3 HOH HOH 2022 B HOH 2023 3 HOH HOH 2023 B HOH 2024 3 HOH HOH 2024 B HOH 2025 3 HOH HOH 2025 B HOH 2026 3 HOH HOH 2026 B HOH 2027 3 HOH HOH 2027 B SER 2 n 1 SER 2 A HIS 3 n 2 HIS 3 A PRO 4 n 3 PRO 4 A ASP 5 n 4 ASP 5 A LEU 6 n 5 LEU 6 A ASN 7 n 6 ASN 7 A LYS 8 n 7 LYS 8 A LEU 9 n 8 LEU 9 A LEU 10 n 9 LEU 10 A GLU 11 n 10 GLU 11 A LEU 12 n 11 LEU 12 A TRP 13 n 12 TRP 13 A PRO 14 n 13 PRO 14 A HIS 15 n 14 HIS 15 A ILE 16 n 15 ILE 16 A GLN 17 n 16 GLN 17 A GLU 18 n 17 GLU 18 A TYR 19 n 18 TYR 19 A GLN 20 n 19 GLN 20 A ASP 21 n 20 ASP 21 A LEU 22 n 21 LEU 22 A ALA 23 n 22 ALA 23 A LEU 24 n 23 LEU 24 A LYS 25 n 24 LYS 25 A HIS 26 n 25 HIS 26 A GLY 27 n 26 GLY 27 A ILE 28 n 27 ILE 28 A ASN 29 n 28 ASN 29 A ASP 30 n 29 ASP 30 A ILE 31 n 30 ILE 31 A PHE 32 n 31 PHE 32 A GLN 33 n 32 GLN 33 A ASP 34 n 33 ASP 34 A ASN 35 n 34 ASN 35 A GLY 36 n 35 GLY 36 A GLY 37 n 36 GLY 37 A LYS 38 n 37 LYS 38 A LEU 39 n 38 LEU 39 A LEU 40 n 39 LEU 40 A GLN 41 n 40 GLN 41 A VAL 42 n 41 VAL 42 A LEU 43 n 42 LEU 43 A LEU 44 n 43 LEU 44 A ILE 45 n 44 ILE 45 A THR 46 n 45 THR 46 A GLY 47 n 46 GLY 47 A LEU 48 n 47 LEU 48 A THR 49 n 48 THR 49 A VAL 50 n 49 VAL 50 A LEU 51 n 50 LEU 51 A PRO 52 n 51 PRO 52 A GLY 53 n 52 GLY 53 A ARG 54 n 53 ARG 54 A GLU 55 n 54 GLU 55 A GLY 56 n 55 GLY 56 A ASN 57 n 56 ASN 57 A ASP 58 n 57 ASP 58 A ALA 59 n 58 ALA 59 A VAL 60 n 59 VAL 60 A ASP 61 n 60 ASP 61 A ASN 62 n 61 ASN 62 A ALA 63 n 62 ALA 63 A GLY 64 n 63 GLY 64 A GLN 65 n 64 GLN 65 A GLU 66 n 65 GLU 66 A TYR 67 n 66 TYR 67 A GLU 68 n 67 GLU 68 A LEU 69 n 68 LEU 69 A LYS 70 n 69 LYS 70 A SER 71 n 70 SER 71 A ILE 72 n 71 ILE 72 A ASN 73 n 72 ASN 73 A ILE 74 n 73 ILE 74 A ASP 75 n 74 ASP 75 A LEU 76 n 75 LEU 76 A THR 77 n 76 THR 77 A LYS 78 n 77 LYS 78 A GLY 79 n 78 GLY 79 A PHE 80 n 79 PHE 80 A SER 81 n 80 SER 81 A THR 82 n 81 THR 82 A HIS 83 n 82 HIS 83 A HIS 84 n 83 HIS 84 A HIS 85 n 84 HIS 85 A MET 86 n 85 MET 86 A ASN 87 n 86 ASN 87 A PRO 88 n 87 PRO 88 A VAL 89 n 88 VAL 89 A ILE 90 n 89 ILE 90 A ILE 91 n 90 ILE 91 A ALA 92 n 91 ALA 92 A LYS 93 n 92 LYS 93 A TYR 94 n 93 TYR 94 A ARG 95 n 94 ARG 95 A GLN 96 n 95 GLN 96 A VAL 97 n 96 VAL 97 A PRO 98 n 97 PRO 98 A TRP 99 n 98 TRP 99 A ILE 100 n 99 ILE 100 A PHE 101 n 100 PHE 101 A ALA 102 n 101 ALA 102 A ILE 103 n 102 ILE 103 A TYR 104 n 103 TYR 104 A ARG 105 n 104 ARG 105 A GLY 106 n 105 GLY 106 A ILE 107 n 106 ILE 107 A ALA 108 n 107 ALA 108 A ILE 109 n 108 ILE 109 A GLU 110 n 109 GLU 110 A ALA 111 n 110 ALA 111 A ILE 112 n 111 ILE 112 A TYR 113 n 112 TYR 113 A ARG 114 n 113 ARG 114 A LEU 115 n 114 LEU 115 A GLU 116 n 115 GLU 116 A PRO 117 n 116 PRO 117 A LYS 118 n 117 LYS 118 A ASP 119 n 118 ASP 119 A LEU 120 n 119 LEU 120 A GLU 121 n 120 GLU 121 A PHE 122 n 121 PHE 122 A TYR 123 n 122 TYR 123 A TYR 124 n 123 TYR 124 A ASP 125 n 124 ASP 125 A LYS 126 n 125 LYS 126 A TRP 127 n 126 TRP 127 A GLU 128 n 127 GLU 128 A ARG 129 n 128 ARG 129 A LYS 130 n 129 LYS 130 A TRP 131 n 130 TRP 131 A TYR 132 n 131 TYR 132 A SER 133 n 132 SER 133 A ASP 134 n 133 ASP 134 A GLY 135 n 134 GLY 135 A HIS 136 n 135 HIS 136 A LYS 137 n 136 LYS 137 A ASP 138 n 137 ASP 138 A ILE 139 n 138 ILE 139 A ASN 140 n 139 ASN 140 A ASN 141 n 140 ASN 141 A PRO 142 n 141 PRO 142 A LYS 143 n 142 LYS 143 A ILE 144 n 143 ILE 144 A PRO 145 n 144 PRO 145 A VAL 146 n 145 VAL 146 A LYS 147 n 146 LYS 147 A TYR 148 n 147 TYR 148 A VAL 149 n 148 VAL 149 A MET 150 n 149 MET 150 A GLU 151 n 150 GLU 151 A HIS 152 n 151 HIS 152 A GLY 153 n 152 GLY 153 A THR 154 n 153 THR 154 A LYS 155 n 154 LYS 155 A ILE 156 n 155 ILE 156 A TYR 157 n 156 TYR 157 A SER 2 n 1 SER 2 B HIS 3 n 2 HIS 3 B PRO 4 n 3 PRO 4 B ASP 5 n 4 ASP 5 B LEU 6 n 5 LEU 6 B ASN 7 n 6 ASN 7 B LYS 8 n 7 LYS 8 B LEU 9 n 8 LEU 9 B LEU 10 n 9 LEU 10 B GLU 11 n 10 GLU 11 B LEU 12 n 11 LEU 12 B TRP 13 n 12 TRP 13 B PRO 14 n 13 PRO 14 B HIS 15 n 14 HIS 15 B ILE 16 n 15 ILE 16 B GLN 17 n 16 GLN 17 B GLU 18 n 17 GLU 18 B TYR 19 n 18 TYR 19 B GLN 20 n 19 GLN 20 B ASP 21 n 20 ASP 21 B LEU 22 n 21 LEU 22 B ALA 23 n 22 ALA 23 B LEU 24 n 23 LEU 24 B LYS 25 n 24 LYS 25 B HIS 26 n 25 HIS 26 B GLY 27 n 26 GLY 27 B ILE 28 n 27 ILE 28 B ASN 29 n 28 ASN 29 B ASP 30 n 29 ASP 30 B ILE 31 n 30 ILE 31 B PHE 32 n 31 PHE 32 B GLN 33 n 32 GLN 33 B ASP 34 n 33 ASP 34 B ASN 35 n 34 ASN 35 B GLY 36 n 35 GLY 36 B GLY 37 n 36 GLY 37 B LYS 38 n 37 LYS 38 B LEU 39 n 38 LEU 39 B LEU 40 n 39 LEU 40 B GLN 41 n 40 GLN 41 B VAL 42 n 41 VAL 42 B LEU 43 n 42 LEU 43 B LEU 44 n 43 LEU 44 B ILE 45 n 44 ILE 45 B THR 46 n 45 THR 46 B GLY 47 n 46 GLY 47 B LEU 48 n 47 LEU 48 B THR 49 n 48 THR 49 B VAL 50 n 49 VAL 50 B LEU 51 n 50 LEU 51 B PRO 52 n 51 PRO 52 B GLY 53 n 52 GLY 53 B ARG 54 n 53 ARG 54 B GLU 55 n 54 GLU 55 B GLY 56 n 55 GLY 56 B ASN 57 n 56 ASN 57 B ASP 58 n 57 ASP 58 B ALA 59 n 58 ALA 59 B VAL 60 n 59 VAL 60 B ASP 61 n 60 ASP 61 B ASN 62 n 61 ASN 62 B ALA 63 n 62 ALA 63 B GLY 64 n 63 GLY 64 B GLN 65 n 64 GLN 65 B GLU 66 n 65 GLU 66 B TYR 67 n 66 TYR 67 B GLU 68 n 67 GLU 68 B LEU 69 n 68 LEU 69 B LYS 70 n 69 LYS 70 B SER 71 n 70 SER 71 B ILE 72 n 71 ILE 72 B ASN 73 n 72 ASN 73 B ILE 74 n 73 ILE 74 B ASP 75 n 74 ASP 75 B LEU 76 n 75 LEU 76 B THR 77 n 76 THR 77 B LYS 78 n 77 LYS 78 B GLY 79 n 78 GLY 79 B PHE 80 n 79 PHE 80 B SER 81 n 80 SER 81 B THR 82 n 81 THR 82 B HIS 83 n 82 HIS 83 B HIS 84 n 83 HIS 84 B HIS 85 n 84 HIS 85 B MET 86 n 85 MET 86 B ASN 87 n 86 ASN 87 B PRO 88 n 87 PRO 88 B VAL 89 n 88 VAL 89 B ILE 90 n 89 ILE 90 B ILE 91 n 90 ILE 91 B ALA 92 n 91 ALA 92 B LYS 93 n 92 LYS 93 B TYR 94 n 93 TYR 94 B ARG 95 n 94 ARG 95 B GLN 96 n 95 GLN 96 B VAL 97 n 96 VAL 97 B PRO 98 n 97 PRO 98 B TRP 99 n 98 TRP 99 B ILE 100 n 99 ILE 100 B PHE 101 n 100 PHE 101 B ALA 102 n 101 ALA 102 B ILE 103 n 102 ILE 103 B TYR 104 n 103 TYR 104 B ARG 105 n 104 ARG 105 B GLY 106 n 105 GLY 106 B ILE 107 n 106 ILE 107 B ALA 108 n 107 ALA 108 B ILE 109 n 108 ILE 109 B GLU 110 n 109 GLU 110 B ALA 111 n 110 ALA 111 B ILE 112 n 111 ILE 112 B TYR 113 n 112 TYR 113 B ARG 114 n 113 ARG 114 B LEU 115 n 114 LEU 115 B GLU 116 n 115 GLU 116 B PRO 117 n 116 PRO 117 B LYS 118 n 117 LYS 118 B ASP 119 n 118 ASP 119 B LEU 120 n 119 LEU 120 B GLU 121 n 120 GLU 121 B PHE 122 n 121 PHE 122 B TYR 123 n 122 TYR 123 B TYR 124 n 123 TYR 124 B ASP 125 n 124 ASP 125 B LYS 126 n 125 LYS 126 B TRP 127 n 126 TRP 127 B GLU 128 n 127 GLU 128 B ARG 129 n 128 ARG 129 B LYS 130 n 129 LYS 130 B TRP 131 n 130 TRP 131 B TYR 132 n 131 TYR 132 B SER 133 n 132 SER 133 B ASP 134 n 133 ASP 134 B GLY 135 n 134 GLY 135 B HIS 136 n 135 HIS 136 B LYS 137 n 136 LYS 137 B ASP 138 n 137 ASP 138 B ILE 139 n 138 ILE 139 B ASN 140 n 139 ASN 140 B ASN 141 n 140 ASN 141 B PRO 142 n 141 PRO 142 B LYS 143 n 142 LYS 143 B ILE 144 n 143 ILE 144 B PRO 145 n 144 PRO 145 B VAL 146 n 145 VAL 146 B LYS 147 n 146 LYS 147 B TYR 148 n 147 TYR 148 B VAL 149 n 148 VAL 149 B MET 150 n 149 MET 150 B GLU 151 n 150 GLU 151 B HIS 152 n 151 HIS 152 B GLY 153 n 152 GLY 153 B THR 154 n 153 THR 154 B LYS 155 n 154 LYS 155 B ILE 156 n 155 ILE 156 B TYR 157 n 156 TYR 157 B author_and_software_defined_assembly PQS 2 dimeric A ASP 58 A OD2 ASP 57 1_555 A MG 1 C MG MG 1_555 A GLU 68 A OE1 GLU 67 1_555 88.8 A ASP 58 A OD2 ASP 57 1_555 A MG 1 C MG MG 1_555 A GLU 68 A OE2 GLU 67 1_555 72.4 A GLU 68 A OE1 GLU 67 1_555 A MG 1 C MG MG 1_555 A GLU 68 A OE2 GLU 67 1_555 50.1 A ASP 58 A OD2 ASP 57 1_555 A MG 1 C MG MG 1_555 A HOH 2014 E O HOH 1_555 147.6 A GLU 68 A OE1 GLU 67 1_555 A MG 1 C MG MG 1_555 A HOH 2014 E O HOH 1_555 74.5 A GLU 68 A OE2 GLU 67 1_555 A MG 1 C MG MG 1_555 A HOH 2014 E O HOH 1_555 113.4 A ASP 58 A OD2 ASP 57 1_555 A MG 1 C MG MG 1_555 A HOH 2016 E O HOH 1_555 62.6 A GLU 68 A OE1 GLU 67 1_555 A MG 1 C MG MG 1_555 A HOH 2016 E O HOH 1_555 127.0 A GLU 68 A OE2 GLU 67 1_555 A MG 1 C MG MG 1_555 A HOH 2016 E O HOH 1_555 134.9 A HOH 2014 E O HOH 1_555 A MG 1 C MG MG 1_555 A HOH 2016 E O HOH 1_555 105.7 B THR 82 B O THR 81 1_555 B MG 1 D MG MG 1_555 B TYR 94 B OH TYR 93 1_555 84.6 B THR 82 B O THR 81 1_555 B MG 1 D MG MG 1_555 B HOH 2013 F O HOH 1_555 92.9 B TYR 94 B OH TYR 93 1_555 B MG 1 D MG MG 1_555 B HOH 2013 F O HOH 1_555 125.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N THR 49 A N THR 48 A O VAL 60 A O VAL 59 A N LYS 70 A N LYS 69 A O ILE 100 A O ILE 99 A N ARG 105 A N ARG 104 A O ALA 108 A O ALA 107 A N ARG 114 A N ARG 113 A O THR 154 A O THR 153 A N PHE 80 A N PHE 79 A O ILE 144 A O ILE 143 B N THR 49 B N THR 48 B O VAL 60 B O VAL 59 B N ALA 59 B N ALA 58 B O TYR 67 B O TYR 66 B N LYS 70 B N LYS 69 B O ILE 100 B O ILE 99 B N ARG 105 B N ARG 104 B O ALA 108 B O ALA 107 B N ARG 114 B N ARG 113 B O THR 154 B O THR 153 B N PHE 80 B N PHE 79 B O ILE 144 B O ILE 143 1 A GLN 33 -99.39 -101.00 1 A PRO 52 -62.90 -100.58 1 A ARG 54 -99.54 -100.47 1 A ASP 58 -82.90 -98.66 1 A THR 82 -132.54 -48.48 1 A HIS 83 174.68 117.52 1 A TRP 131 -39.04 -28.99 1 B PHE 32 -97.28 30.49 1 B ASP 34 30.54 49.86 1 B PRO 52 -47.94 176.73 1 B ARG 54 -82.14 -153.29 1 B ASN 57 -40.07 154.98 1 B ASP 61 -108.60 -164.31 1 B LEU 76 -91.42 -87.73 1 B THR 82 -132.73 -79.30 1 B SER 133 -53.61 -4.82 1 B ASN 141 35.70 63.12 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM WATER.TOP ION.PARAM 0.009 0.15 0.15 3.0 8.0 808 8104 10.5 92.3 RANDOM 1 THROUGHOUT 0.0 FOURIER SYNTHESIS PDB ENTRY 1PVU 0.42 0.24 5.00 0.54 0.35 3.0 8.0 68 2654 2 0 2584 0.007 1.3 22.0 0.79 7.47 1.50 11.76 2.00 9.89 2.00 14.39 2.50 0.359 0.029 0.217 3.18 148 1101 6 11.8 93.2 3.000 8.000 1H56 8104 0.13000 1 1.800 92.3 refinement CNS 1.0 data reduction DENZO data scaling SCALEPACK phasing CNS Structural and biochemical characterization of a new magnesium ion binding site near Tyr94 in the restriction endonuclease PvuII 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N A HIS 3 A HIS 2 HELX_P A HIS 26 A HIS 25 1 1 24 A ASN 35 A ASN 34 HELX_P A GLY 47 A GLY 46 1 2 13 A ASN 87 A ASN 86 HELX_P A ARG 95 A ARG 94 1 3 9 A GLU 116 A GLU 115 HELX_P A ASP 119 A ASP 118 5 4 4 A LEU 120 A LEU 119 HELX_P A ASP 134 A ASP 133 1 5 15 A VAL 146 A VAL 145 HELX_P A GLY 153 A GLY 152 1 6 8 B HIS 3 B HIS 2 HELX_P B HIS 26 B HIS 25 1 7 24 B ASN 35 B ASN 34 HELX_P B GLY 47 B GLY 46 1 8 13 B ASN 87 B ASN 86 HELX_P B GLN 96 B GLN 95 1 9 10 B GLU 116 B GLU 115 HELX_P B ASP 134 B ASP 133 1 10 19 B VAL 146 B VAL 145 HELX_P B GLY 153 B GLY 152 1 11 8 metalc 2.989 A MG 1 C MG MG 1_555 A ASP 58 A OD2 ASP 57 1_555 metalc 2.405 A MG 1 C MG MG 1_555 A GLU 68 A OE1 GLU 67 1_555 metalc 2.721 A MG 1 C MG MG 1_555 A GLU 68 A OE2 GLU 67 1_555 metalc 1.926 A MG 1 C MG MG 1_555 A HOH 2014 E O HOH 1_555 metalc 2.664 A MG 1 C MG MG 1_555 A HOH 2016 E O HOH 1_555 metalc 2.657 B MG 1 D MG MG 1_555 B THR 82 B O THR 81 1_555 metalc 2.349 B MG 1 D MG MG 1_555 B TYR 94 B OH TYR 93 1_555 metalc 2.835 B MG 1 D MG MG 1_555 B HOH 2013 F O HOH 1_555 ENDONUCLEASE ENDONUCLEASE, TYPE II RESTRICTION ENDONUCLEASE, HYDROLASE, NUCLEASE T2P2_PROVU UNP 1 P23657 2 157 1H56 2 157 P23657 A 1 1 156 2 157 1H56 2 157 P23657 B 1 1 156 2 4 2 6 2 anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel A THR 49 A THR 48 A VAL 50 A VAL 49 A ALA 59 A ALA 58 A VAL 60 A VAL 59 A GLU 68 A GLU 67 A ASN 73 A ASN 72 A TRP 99 A TRP 98 A ARG 105 A ARG 104 A ALA 108 A ALA 107 A LEU 115 A LEU 114 A THR 154 A THR 153 A TYR 157 A TYR 156 A GLY 79 A GLY 78 A PHE 80 A PHE 79 A ILE 144 A ILE 143 A PRO 145 A PRO 144 B THR 49 B THR 48 B VAL 50 B VAL 49 B ALA 59 B ALA 58 B VAL 60 B VAL 59 B GLU 66 B GLU 65 B ASN 73 B ASN 72 B TRP 99 B TRP 98 B ARG 105 B ARG 104 B ALA 108 B ALA 107 B LEU 115 B LEU 114 B THR 154 B THR 153 B TYR 157 B TYR 156 B GLY 79 B GLY 78 B PHE 80 B PHE 79 B ILE 144 B ILE 143 B PRO 145 B PRO 144 BINDING SITE FOR RESIDUE MG A 1 A MG 1 Software 5 BINDING SITE FOR RESIDUE MG B 1 B MG 1 Software 4 A ASP 58 A ASP 57 5 1_555 A GLU 68 A GLU 67 5 1_555 A LYS 70 A LYS 69 5 1_555 A HOH 2014 E HOH 5 1_555 A HOH 2016 E HOH 5 1_555 B THR 82 B THR 81 4 1_555 B HIS 83 B HIS 82 4 1_555 B TYR 94 B TYR 93 4 1_555 B HOH 2013 F HOH 4 1_555 18 P 21 21 2