0.011788
0.000000
0.000000
0.000000
0.007768
0.000000
0.000000
0.000000
0.019708
0.00000
0.00000
0.00000
Royant, A.
Nollert, P.
Edman, K.
Neutze, R.
Landau, E.M.
Pebay-Peyroula, E.
Navarro, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
84.830
128.740
50.740
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C20 H28 O
284.436
RETINAL
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CL
N
75
N
N
N
76
S
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
C
N
81
N
C
N
82
N
O
N
83
N
N
N
84
N
O
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
C
N
102
N
O
N
103
N
O
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
N
N
115
N
C
N
116
N
C
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
N
N
125
S
C
N
126
N
C
N
127
N
O
N
128
N
C
Y
129
N
C
Y
130
N
N
Y
131
N
C
Y
132
N
C
Y
133
N
N
N
134
N
O
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
N
N
149
S
C
N
150
N
C
N
151
N
O
N
152
S
C
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
O
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
N
N
171
S
C
N
172
N
C
N
173
N
O
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
C
N
178
N
O
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
N
N
193
S
C
N
194
N
C
N
195
N
O
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
C
N
200
N
N
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
N
222
N
C
N
223
N
S
N
224
N
C
N
225
N
O
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
Y
247
N
C
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
N
N
261
S
C
N
262
N
C
N
263
N
O
N
264
N
C
N
265
N
C
N
266
N
C
N
267
N
O
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
C
N
282
N
C
N
283
N
C
N
284
N
C
N
285
N
C
N
286
N
C
N
287
N
C
N
288
N
C
N
289
N
C
N
290
N
C
N
291
N
C
N
292
N
O
N
293
N
C
N
294
N
C
N
295
N
C
N
296
N
C
N
297
N
C
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
O
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
R
C
N
345
N
O
N
346
N
C
N
347
N
O
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
N
N
358
S
C
N
359
N
C
N
360
N
O
N
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
N
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
N
371
N
O
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
N
N
385
S
C
N
386
N
C
N
387
N
O
N
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
C
Y
394
N
C
N
395
N
O
N
396
N
O
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
N
N
409
S
C
N
410
N
C
N
411
N
O
N
412
N
C
N
413
N
C
N
414
N
C
N
415
N
O
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
E
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
E
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
E
doub
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
E
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
doub
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
doub
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
Y
353
N
doub
Y
354
N
sing
Y
355
N
sing
N
356
N
sing
Y
357
N
doub
Y
358
N
sing
Y
359
N
sing
N
360
N
sing
Y
361
N
sing
Y
362
N
doub
N
363
N
sing
Y
364
N
doub
N
365
N
sing
Y
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
doub
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
Y
381
N
doub
Y
382
N
sing
Y
383
N
sing
N
384
N
sing
Y
385
N
doub
N
386
N
sing
Y
387
N
doub
N
388
N
sing
Y
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
doub
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
98
10131
10.1073/PNAS.181203898
11504917
X-Ray Structure of Sensory Rhodopsin II at 2.1 A Resolution
2001
10.2210/pdb1h68/pdb
pdb_00001h68
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
2000-10-15
SINGLE WAVELENGTH
M
x-ray
1
0.933
1.0
ID14-2
ESRF
0.933
SYNCHROTRON
ESRF BEAMLINE ID14-2
25368.814
SENSORY RHODOPSIN II
1
man
polymer
284.436
RETINAL
1
syn
non-polymer
35.453
CHLORIDE ION
1
syn
non-polymer
18.015
water
28
nat
water
SRII
no
no
MVGLTTLFWLGAIGMLVGTLAFAWAGRDAGSGERRYYVTLVGISGIAAVAYVVMALGVGWVPVAERTVFAPRYIDWILTT
PLIVYFLGLLAGLDSREFGIVITLNTVVMLAGFAGAMVPGIERYALFGMGAVAFLGLVYYLVGPMTESASQRSSGIKSLY
VRLRNLTVILWAIYPFIWLLGPPGVALLTPTVDVALIVYLDLVTKVGFGFIALDAAATLRAEHGESLAGVDTDAPAVAD
MVGLTTLFWLGAIGMLVGTLAFAWAGRDAGSGERRYYVTLVGISGIAAVAYVVMALGVGWVPVAERTVFAPRYIDWILTT
PLIVYFLGLLAGLDSREFGIVITLNTVVMLAGFAGAMVPGIERYALFGMGAVAFLGLVYYLVGPMTESASQRSSGIKSLY
VRLRNLTVILWAIYPFIWLLGPPGVALLTPTVDVALIVYLDLVTKVGFGFIALDAAATLRAEHGESLAGVDTDAPAVAD
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
NATRONOBACTERIUM PHARAONIS
sample
2257
NATRONOMONAS PHARAONIS
562
ESCHERICHIA COLI
2
2.73
54.95
SIDE CHAINS, LOOPS AND THE RETINAL WERE OMITTED IN THE STARTING MODEL FOR MOLECULAR REPLACEMENT
4.60
pH 4.60
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2001-08-28
1
1
2011-05-08
1
2
2011-07-13
1
3
2023-12-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
PDBE
Y
PDBE
2001-06-08
REL
REL
RET
RETINAL
CL
CHLORIDE ION
HOH
water
1QHJ
PDB
experimental model
RET
300
2
RET
RET
300
A
CL
500
3
CL
CL
500
A
HOH
2001
4
HOH
HOH
2001
A
HOH
2002
4
HOH
HOH
2002
A
HOH
2003
4
HOH
HOH
2003
A
HOH
2004
4
HOH
HOH
2004
A
HOH
2005
4
HOH
HOH
2005
A
HOH
2006
4
HOH
HOH
2006
A
HOH
2007
4
HOH
HOH
2007
A
HOH
2008
4
HOH
HOH
2008
A
HOH
2009
4
HOH
HOH
2009
A
HOH
2010
4
HOH
HOH
2010
A
HOH
2011
4
HOH
HOH
2011
A
HOH
2012
4
HOH
HOH
2012
A
HOH
2013
4
HOH
HOH
2013
A
HOH
2014
4
HOH
HOH
2014
A
HOH
2015
4
HOH
HOH
2015
A
HOH
2016
4
HOH
HOH
2016
A
HOH
2017
4
HOH
HOH
2017
A
HOH
2018
4
HOH
HOH
2018
A
HOH
2019
4
HOH
HOH
2019
A
HOH
2020
4
HOH
HOH
2020
A
HOH
2021
4
HOH
HOH
2021
A
HOH
2022
4
HOH
HOH
2022
A
HOH
2023
4
HOH
HOH
2023
A
HOH
2024
4
HOH
HOH
2024
A
HOH
2025
4
HOH
HOH
2025
A
HOH
2026
4
HOH
HOH
2026
A
HOH
2027
4
HOH
HOH
2027
A
HOH
2028
4
HOH
HOH
2028
A
n
1
1
A
VAL
2
n
2
VAL
2
A
GLY
3
n
3
GLY
3
A
LEU
4
n
4
LEU
4
A
THR
5
n
5
THR
5
A
THR
6
n
6
THR
6
A
LEU
7
n
7
LEU
7
A
PHE
8
n
8
PHE
8
A
TRP
9
n
9
TRP
9
A
LEU
10
n
10
LEU
10
A
GLY
11
n
11
GLY
11
A
ALA
12
n
12
ALA
12
A
ILE
13
n
13
ILE
13
A
GLY
14
n
14
GLY
14
A
MET
15
n
15
MET
15
A
LEU
16
n
16
LEU
16
A
VAL
17
n
17
VAL
17
A
GLY
18
n
18
GLY
18
A
THR
19
n
19
THR
19
A
LEU
20
n
20
LEU
20
A
ALA
21
n
21
ALA
21
A
PHE
22
n
22
PHE
22
A
ALA
23
n
23
ALA
23
A
TRP
24
n
24
TRP
24
A
ALA
25
n
25
ALA
25
A
GLY
26
n
26
GLY
26
A
ARG
27
n
27
ARG
27
A
ASP
28
n
28
ASP
28
A
ALA
29
n
29
ALA
29
A
GLY
30
n
30
GLY
30
A
SER
31
n
31
SER
31
A
GLY
32
n
32
GLY
32
A
GLU
33
n
33
GLU
33
A
ARG
34
n
34
ARG
34
A
ARG
35
n
35
ARG
35
A
TYR
36
n
36
TYR
36
A
TYR
37
n
37
TYR
37
A
VAL
38
n
38
VAL
38
A
THR
39
n
39
THR
39
A
LEU
40
n
40
LEU
40
A
VAL
41
n
41
VAL
41
A
GLY
42
n
42
GLY
42
A
ILE
43
n
43
ILE
43
A
SER
44
n
44
SER
44
A
GLY
45
n
45
GLY
45
A
ILE
46
n
46
ILE
46
A
ALA
47
n
47
ALA
47
A
ALA
48
n
48
ALA
48
A
VAL
49
n
49
VAL
49
A
ALA
50
n
50
ALA
50
A
TYR
51
n
51
TYR
51
A
VAL
52
n
52
VAL
52
A
VAL
53
n
53
VAL
53
A
MET
54
n
54
MET
54
A
ALA
55
n
55
ALA
55
A
LEU
56
n
56
LEU
56
A
GLY
57
n
57
GLY
57
A
VAL
58
n
58
VAL
58
A
GLY
59
n
59
GLY
59
A
TRP
60
n
60
TRP
60
A
VAL
61
n
61
VAL
61
A
PRO
62
n
62
PRO
62
A
VAL
63
n
63
VAL
63
A
ALA
64
n
64
ALA
64
A
GLU
65
n
65
GLU
65
A
ARG
66
n
66
ARG
66
A
THR
67
n
67
THR
67
A
VAL
68
n
68
VAL
68
A
PHE
69
n
69
PHE
69
A
ALA
70
n
70
ALA
70
A
PRO
71
n
71
PRO
71
A
ARG
72
n
72
ARG
72
A
TYR
73
n
73
TYR
73
A
ILE
74
n
74
ILE
74
A
ASP
75
n
75
ASP
75
A
TRP
76
n
76
TRP
76
A
ILE
77
n
77
ILE
77
A
LEU
78
n
78
LEU
78
A
THR
79
n
79
THR
79
A
THR
80
n
80
THR
80
A
PRO
81
n
81
PRO
81
A
LEU
82
n
82
LEU
82
A
ILE
83
n
83
ILE
83
A
VAL
84
n
84
VAL
84
A
TYR
85
n
85
TYR
85
A
PHE
86
n
86
PHE
86
A
LEU
87
n
87
LEU
87
A
GLY
88
n
88
GLY
88
A
LEU
89
n
89
LEU
89
A
LEU
90
n
90
LEU
90
A
ALA
91
n
91
ALA
91
A
GLY
92
n
92
GLY
92
A
LEU
93
n
93
LEU
93
A
ASP
94
n
94
ASP
94
A
SER
95
n
95
SER
95
A
ARG
96
n
96
ARG
96
A
GLU
97
n
97
GLU
97
A
PHE
98
n
98
PHE
98
A
GLY
99
n
99
GLY
99
A
ILE
100
n
100
ILE
100
A
VAL
101
n
101
VAL
101
A
ILE
102
n
102
ILE
102
A
THR
103
n
103
THR
103
A
LEU
104
n
104
LEU
104
A
ASN
105
n
105
ASN
105
A
THR
106
n
106
THR
106
A
VAL
107
n
107
VAL
107
A
VAL
108
n
108
VAL
108
A
MET
109
n
109
MET
109
A
LEU
110
n
110
LEU
110
A
ALA
111
n
111
ALA
111
A
GLY
112
n
112
GLY
112
A
PHE
113
n
113
PHE
113
A
ALA
114
n
114
ALA
114
A
GLY
115
n
115
GLY
115
A
ALA
116
n
116
ALA
116
A
MET
117
n
117
MET
117
A
VAL
118
n
118
VAL
118
A
PRO
119
n
119
PRO
119
A
GLY
120
n
120
GLY
120
A
ILE
121
n
121
ILE
121
A
GLU
122
n
122
GLU
122
A
ARG
123
n
123
ARG
123
A
TYR
124
n
124
TYR
124
A
ALA
125
n
125
ALA
125
A
LEU
126
n
126
LEU
126
A
PHE
127
n
127
PHE
127
A
GLY
128
n
128
GLY
128
A
MET
129
n
129
MET
129
A
GLY
130
n
130
GLY
130
A
ALA
131
n
131
ALA
131
A
VAL
132
n
132
VAL
132
A
ALA
133
n
133
ALA
133
A
PHE
134
n
134
PHE
134
A
LEU
135
n
135
LEU
135
A
GLY
136
n
136
GLY
136
A
LEU
137
n
137
LEU
137
A
VAL
138
n
138
VAL
138
A
TYR
139
n
139
TYR
139
A
TYR
140
n
140
TYR
140
A
LEU
141
n
141
LEU
141
A
VAL
142
n
142
VAL
142
A
GLY
143
n
143
GLY
143
A
PRO
144
n
144
PRO
144
A
MET
145
n
145
MET
145
A
THR
146
n
146
THR
146
A
GLU
147
n
147
GLU
147
A
SER
148
n
148
SER
148
A
ALA
149
n
149
ALA
149
A
SER
150
n
150
SER
150
A
GLN
151
n
151
GLN
151
A
ARG
152
n
152
ARG
152
A
SER
153
n
153
SER
153
A
SER
154
n
154
SER
154
A
GLY
155
n
155
GLY
155
A
ILE
156
n
156
ILE
156
A
LYS
157
n
157
LYS
157
A
SER
158
n
158
SER
158
A
LEU
159
n
159
LEU
159
A
TYR
160
n
160
TYR
160
A
VAL
161
n
161
VAL
161
A
ARG
162
n
162
ARG
162
A
LEU
163
n
163
LEU
163
A
ARG
164
n
164
ARG
164
A
ASN
165
n
165
ASN
165
A
LEU
166
n
166
LEU
166
A
THR
167
n
167
THR
167
A
VAL
168
n
168
VAL
168
A
ILE
169
n
169
ILE
169
A
LEU
170
n
170
LEU
170
A
TRP
171
n
171
TRP
171
A
ALA
172
n
172
ALA
172
A
ILE
173
n
173
ILE
173
A
TYR
174
n
174
TYR
174
A
PRO
175
n
175
PRO
175
A
PHE
176
n
176
PHE
176
A
ILE
177
n
177
ILE
177
A
TRP
178
n
178
TRP
178
A
LEU
179
n
179
LEU
179
A
LEU
180
n
180
LEU
180
A
GLY
181
n
181
GLY
181
A
PRO
182
n
182
PRO
182
A
PRO
183
n
183
PRO
183
A
GLY
184
n
184
GLY
184
A
VAL
185
n
185
VAL
185
A
ALA
186
n
186
ALA
186
A
LEU
187
n
187
LEU
187
A
LEU
188
n
188
LEU
188
A
THR
189
n
189
THR
189
A
PRO
190
n
190
PRO
190
A
THR
191
n
191
THR
191
A
VAL
192
n
192
VAL
192
A
ASP
193
n
193
ASP
193
A
VAL
194
n
194
VAL
194
A
ALA
195
n
195
ALA
195
A
LEU
196
n
196
LEU
196
A
ILE
197
n
197
ILE
197
A
VAL
198
n
198
VAL
198
A
TYR
199
n
199
TYR
199
A
LEU
200
n
200
LEU
200
A
ASP
201
n
201
ASP
201
A
LEU
202
n
202
LEU
202
A
VAL
203
n
203
VAL
203
A
THR
204
n
204
THR
204
A
LYS
205
n
205
LYS
205
A
VAL
206
n
206
VAL
206
A
GLY
207
n
207
GLY
207
A
PHE
208
n
208
PHE
208
A
GLY
209
n
209
GLY
209
A
PHE
210
n
210
PHE
210
A
ILE
211
n
211
ILE
211
A
ALA
212
n
212
ALA
212
A
LEU
213
n
213
LEU
213
A
ASP
214
n
214
ASP
214
A
ALA
215
n
215
ALA
215
A
ALA
216
n
216
ALA
216
A
ALA
217
n
217
ALA
217
A
THR
218
n
218
THR
218
A
LEU
219
n
219
LEU
219
A
n
220
220
A
n
221
221
A
n
222
222
A
n
223
223
A
n
224
224
A
n
225
225
A
n
226
226
A
n
227
227
A
n
228
228
A
n
229
229
A
n
230
230
A
n
231
231
A
n
232
232
A
n
233
233
A
n
234
234
A
n
235
235
A
n
236
236
A
n
237
237
A
n
238
238
A
n
239
239
A
author_and_software_defined_assembly
PQS
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
63
A
N
VAL
63
A
O
ARG
66
A
O
ARG
66
1
A
CG
ASP
28
A
CG
ASP
28
1
Y
1
A
OD1
ASP
28
A
OD1
ASP
28
1
Y
1
A
OD2
ASP
28
A
OD2
ASP
28
1
Y
1
A
OG
SER
31
A
OG
SER
31
1
Y
1
A
CG
GLU
33
A
CG
GLU
33
1
Y
1
A
CD
GLU
33
A
CD
GLU
33
1
Y
1
A
OE1
GLU
33
A
OE1
GLU
33
1
Y
1
A
OE2
GLU
33
A
OE2
GLU
33
1
Y
1
A
CG
ARG
35
A
CG
ARG
35
1
Y
1
A
CD
ARG
35
A
CD
ARG
35
1
Y
1
A
NE
ARG
35
A
NE
ARG
35
1
Y
1
A
CZ
ARG
35
A
CZ
ARG
35
1
Y
1
A
NH1
ARG
35
A
NH1
ARG
35
1
Y
1
A
NH2
ARG
35
A
NH2
ARG
35
1
Y
1
A
CG
GLU
97
A
CG
GLU
97
1
Y
1
A
CD
GLU
97
A
CD
GLU
97
1
Y
1
A
OE1
GLU
97
A
OE1
GLU
97
1
Y
1
A
OE2
GLU
97
A
OE2
GLU
97
1
Y
1
A
CG
LEU
219
A
CG
LEU
219
1
Y
1
A
CD1
LEU
219
A
CD1
LEU
219
1
Y
1
A
CD2
LEU
219
A
CD2
LEU
219
1
Y
1
A
MET
1
A
MET
1
1
Y
1
A
ARG
220
A
ARG
220
1
Y
1
A
ALA
221
A
ALA
221
1
Y
1
A
GLU
222
A
GLU
222
1
Y
1
A
HIS
223
A
HIS
223
1
Y
1
A
GLY
224
A
GLY
224
1
Y
1
A
GLU
225
A
GLU
225
1
Y
1
A
SER
226
A
SER
226
1
Y
1
A
LEU
227
A
LEU
227
1
Y
1
A
ALA
228
A
ALA
228
1
Y
1
A
GLY
229
A
GLY
229
1
Y
1
A
VAL
230
A
VAL
230
1
Y
1
A
ASP
231
A
ASP
231
1
Y
1
A
THR
232
A
THR
232
1
Y
1
A
ASP
233
A
ASP
233
1
Y
1
A
ALA
234
A
ALA
234
1
Y
1
A
PRO
235
A
PRO
235
1
Y
1
A
ALA
236
A
ALA
236
1
Y
1
A
VAL
237
A
VAL
237
1
Y
1
A
ALA
238
A
ALA
238
1
Y
1
A
ASP
239
A
ASP
239
1
Y
1
21.01
2.80
113.90
134.91
A
A
A
CB
CG1
CD1
ILE
ILE
ILE
177
177
177
B
B
B
N
1
A
ASP
28
-79.66
-71.92
1
A
ALA
29
50.67
100.32
1
A
SER
31
-168.56
-3.13
1
A
ALA
64
53.28
-126.13
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
RETFIN-LO.PAR
RETFIN.TOP
ION.PARAM
ION.TOP
37.5
7.55
0.00
0.00
3.40
0.00
-10.95
0.256
0.009
0.237
0.237
2.1
39.9
891
15956
5.6
95.8
RANDOM
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
1QHJ
FALT MODEL
113.25
0.48
0.28
0.25
5.00
0.23
0.19
2.1
39.9
28
1674
21
0
1625
0.006
1.0
17.5
0.74
1.27
1.50
1.93
2.00
5.60
2.00
6.86
2.50
0.295
0.028
0.273
2.23
109
2059
6
5.0
80.1
22.7
2.100
39.900
1H68
15956
0.07200
1
8.4000
6.300
96.1
0.42500
2.10
2.21
1.800
1
4.40
80.1
refinement
CNS
1.0
data reduction
DENZO
data scaling
CCP4
phasing
AMoRE
sensory rhodopsin II
1
N
N
2
N
N
3
N
N
4
N
N
A
GLY
3
A
GLY
3
HELX_P
A
GLY
26
A
GLY
26
1
1
24
A
GLU
33
A
GLU
33
HELX_P
A
LEU
56
A
LEU
56
1
2
24
A
ALA
70
A
ALA
70
HELX_P
A
GLY
92
A
GLY
92
1
3
23
A
ASP
94
A
ASP
94
HELX_P
A
VAL
118
A
VAL
118
1
4
25
A
GLU
122
A
GLU
122
HELX_P
A
SER
150
A
SER
150
1
5
29
A
SER
153
A
SER
153
HELX_P
A
GLY
181
A
GLY
181
1
7
29
A
THR
189
A
THR
189
HELX_P
A
LEU
219
A
LEU
219
1
8
31
covale
1.261
one
A
LYS
205
A
NZ
LYS
205
1_555
A
RET
300
B
C15
RET
1_555
RECEPTOR
RECEPTOR, ARCHAEAL RHODOPSIN, PHOTORECEPTOR, PHOTOTAXIS
BACT_NATPH
UNP
1
P42196
1
239
1H68
1
239
P42196
A
1
1
239
2
anti-parallel
A
TRP
60
A
TRP
60
A
VAL
63
A
VAL
63
A
ARG
66
A
ARG
66
A
PHE
69
A
PHE
69
BINDING SITE FOR RESIDUE CL A 500
A
CL
500
Software
4
BINDING SITE FOR RESIDUE RET A 300
A
RET
300
Software
11
A
PHE
69
A
PHE
69
4
1_555
A
ARG
72
A
ARG
72
4
1_555
A
TYR
73
A
TYR
73
4
1_555
A
HOH
2018
D
HOH
4
1_555
A
TRP
76
A
TRP
76
11
1_555
A
THR
80
A
THR
80
11
1_555
A
GLY
112
A
GLY
112
11
1_555
A
PHE
127
A
PHE
127
11
1_555
A
PHE
134
A
PHE
134
11
1_555
A
TRP
171
A
TRP
171
11
1_555
A
TYR
174
A
TYR
174
11
1_555
A
TRP
178
A
TRP
178
11
1_555
A
ASP
201
A
ASP
201
11
1_555
A
THR
204
A
THR
204
11
1_555
A
LYS
205
A
LYS
205
11
1_555
20
C 2 2 21