0.007888
0.004554
0.000000
0.000000
0.009108
0.000000
0.000000
0.000000
0.013484
0.00000
0.00000
0.00000
Rowsell, S.
Pauptit, R.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
126.779
126.779
74.161
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
S
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
N
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
C
N
232
N
C
N
233
N
S
N
234
N
C
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
Y
252
N
C
Y
253
N
C
Y
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
O
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
R
C
N
306
N
O
N
307
N
C
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
N
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
N
356
N
O
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
N
374
N
C
N
375
N
C
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
Y
246
N
doub
Y
247
N
sing
Y
248
N
sing
N
249
N
sing
Y
250
N
doub
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
Y
315
N
doub
Y
316
N
sing
Y
317
N
sing
N
318
N
sing
Y
319
N
doub
Y
320
N
sing
Y
321
N
sing
N
322
N
sing
Y
323
N
sing
Y
324
N
doub
N
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
Y
343
N
doub
Y
344
N
sing
Y
345
N
sing
N
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
UK
Biochem.J.
BIJOAK
0043
0264-6021
359
427
10.1042/0264-6021:3590427
11583591
Study of the Interaction of the Medium Chain Mu2 Subunit of the Clathrin-Associated Adapter Protein Complex 2 with Cytotoxic T-Lymphocyte Antigen 4 and Cd28
2001
US
Science
SCIEAS
0038
0036-8075
282
1327
10.1126/SCIENCE.282.5392.1327
9812899
A Structural Explanation for the Recognition of Tyrosine-Based Endocytotic Signals
1998
10.2210/pdb1h6e/pdb
pdb_00001h6e
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
MIRROR
CCD
1999-04-26
ADSC CCD
YES
SINGLE WAVELENGTH
M
x-ray
1
0.87
1.0
PX9.6
SRS
0.87
SYNCHROTRON
SRS BEAMLINE PX9.6
THE FIRST 16 RESIDUES OF THE POLYMER MAKE UP A 6HIS-CMYC-TAG (HHHHHHEQKLISEEDL)
33014.516
CLATHRIN COAT ASSEMBLY PROTEIN AP50
INTERNALIZATION SIGNAL BINDING DOMAIN
1
man
polymer
11-MER INTERNALISATION SIGNAL MOTIF FROM CTLA-4 (HOMO SAPIENS), TTGVYVKMPPT
1194.419
CYTOTOXIC T-LYMPHOCYTE PROTEIN 4
1
syn
polymer
CLATHRIN COAT ASSOCIATED PROTEIN AP50, PLASMA MEMBRANE ADAPTOR AP-2 50 KDA PROTEIN, HA2 50 KDA SUBUNIT, CLATHRIN ASSEMBLY PROTEIN COMPLEX 2 MEDIUM CHAIN, AP-2 MU 2 CHAIN, AP50
CYTOTOXIC T-LYMPHOCYTE-ASSOCIATED ANTIGEN 4, CTLA-4, CD152 ANTIGEN
no
no
HHHHHHEQKLISEEDLEGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGK
GTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVI
KSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPIS
MNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC
HHHHHHEQKLISEEDLEGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGK
GTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVI
KSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPIS
MNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC
A
polypeptide(L)
no
no
TTGVYVKMPPT
TTGVYVKMPPT
P
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
9606
HOMO SAPIENS
511693
ESCHERICHIA COLI
BL21
1
5.03
75
ISOMORPHOUS TO 1BXX
VAPOR DIFFUSION, HANGING DROP
7.00
HANGING DROPS CONTAINING A 1:1 MIXTURE OF COMPLEX SOLUTION 6MG/ML PROTEIN AND 1MM 11MER PEPTIDE SOLUTION IN 20MM HEPES PH7.5, 1MM DTT AND RESERVOIR BUFFER 1.4-2.4M SODIUM CHLORIDE, 0.1M MES PH6.2-7.0, 0.4M NA/K PHOSPHATE, 15% GLYCEROL, pH 7.00
atom_site
exptl_crystal_grow
pdbx_database_proc
pdbx_database_status
struct_biol
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
repository
Initial release
Data collection
Derived calculations
Refinement description
Source and taxonomy
Version format compliance
Atomic model
Data collection
Experimental preparation
Other
Data collection
Database references
Other
Refinement description
1
0
2001-11-28
1
1
2016-12-21
2
0
2019-05-29
2
1
2023-12-13
_exptl_crystal_grow.method
_pdbx_database_status.recvd_author_approval
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
MU2 ADAPTIN SUBUNIT (AP50) OF AP2 ADAPTOR (SECOND DOMAIN), COMPLEXED WITH EGFR INTERNALIZATION PEPTIDE FYRALM
MU2 ADAPTIN SUBUNIT (AP50) OF AP2 ADAPTOR (SECOND DOMAIN), COMPLEXED WITH TGN38 INTERNALIZATION PEPTIDE DYQRLN
MU2 ADAPTIN SUBUNIT (AP50) OF AP2 ADAPTOR (SECOND DOMAIN), COMPLEXED WITH P-SELECTIN INTERNALIZATION PEPTIDE SHLGTYGVFTNAA
MU2 ADAPTIN SUBUNIT (AP50) OF AP2 CLATHRIN ADAPTOR,COMPLEXED WITH EGFR INTERNALIZATION PEPTIDE FYRALM AT 2.5 ARESOLUTION
PDBE
Y
PDBE
2001-06-12
REL
REL
9606
HUMAN
HOMO SAPIENS
sample
1BXX
PDB ENTRY 1BXX
PDB
experimental model
n
1
148
A
n
2
149
A
n
3
150
A
n
4
151
A
n
5
152
A
n
6
153
A
n
7
154
A
n
8
155
A
n
9
156
A
n
10
157
A
n
11
158
A
n
12
159
A
n
13
160
A
n
14
161
A
n
15
162
A
n
16
163
A
n
17
164
A
n
18
165
A
ILE
166
n
19
ILE
166
A
LYS
167
n
20
LYS
167
A
TYR
168
n
21
TYR
168
A
ARG
169
n
22
ARG
169
A
ARG
170
n
23
ARG
170
A
ASN
171
n
24
ASN
171
A
GLU
172
n
25
GLU
172
A
LEU
173
n
26
LEU
173
A
PHE
174
n
27
PHE
174
A
LEU
175
n
28
LEU
175
A
ASP
176
n
29
ASP
176
A
VAL
177
n
30
VAL
177
A
LEU
178
n
31
LEU
178
A
GLU
179
n
32
GLU
179
A
SER
180
n
33
SER
180
A
VAL
181
n
34
VAL
181
A
ASN
182
n
35
ASN
182
A
LEU
183
n
36
LEU
183
A
LEU
184
n
37
LEU
184
A
MET
185
n
38
MET
185
A
SER
186
n
39
SER
186
A
PRO
187
n
40
PRO
187
A
GLN
188
n
41
GLN
188
A
GLY
189
n
42
GLY
189
A
GLN
190
n
43
GLN
190
A
VAL
191
n
44
VAL
191
A
LEU
192
n
45
LEU
192
A
SER
193
n
46
SER
193
A
ALA
194
n
47
ALA
194
A
HIS
195
n
48
HIS
195
A
VAL
196
n
49
VAL
196
A
SER
197
n
50
SER
197
A
GLY
198
n
51
GLY
198
A
ARG
199
n
52
ARG
199
A
VAL
200
n
53
VAL
200
A
VAL
201
n
54
VAL
201
A
MET
202
n
55
MET
202
A
LYS
203
n
56
LYS
203
A
SER
204
n
57
SER
204
A
TYR
205
n
58
TYR
205
A
LEU
206
n
59
LEU
206
A
SER
207
n
60
SER
207
A
GLY
208
n
61
GLY
208
A
MET
209
n
62
MET
209
A
PRO
210
n
63
PRO
210
A
GLU
211
n
64
GLU
211
A
CYS
212
n
65
CYS
212
A
LYS
213
n
66
LYS
213
A
PHE
214
n
67
PHE
214
A
GLY
215
n
68
GLY
215
A
MET
216
n
69
MET
216
A
ASN
217
n
70
ASN
217
A
ASP
218
n
71
ASP
218
A
n
72
219
A
n
73
220
A
n
74
221
A
n
75
222
A
n
76
223
A
n
77
224
A
n
78
225
A
n
79
226
A
n
80
227
A
n
81
228
A
n
82
229
A
n
83
230
A
n
84
231
A
n
85
232
A
n
86
233
A
n
87
234
A
n
88
235
A
n
89
236
A
n
90
237
A
n
91
238
A
n
92
239
A
n
93
240
A
n
94
241
A
n
95
242
A
n
96
243
A
n
97
244
A
n
98
245
A
n
99
246
A
n
100
247
A
n
101
248
A
n
102
249
A
n
103
250
A
n
104
251
A
n
105
252
A
n
106
253
A
n
107
254
A
n
108
255
A
n
109
256
A
n
110
257
A
n
111
258
A
n
112
259
A
n
113
260
A
n
114
261
A
SER
262
n
115
SER
262
A
ILE
263
n
116
ILE
263
A
SER
264
n
117
SER
264
A
PHE
265
n
118
PHE
265
A
ILE
266
n
119
ILE
266
A
PRO
267
n
120
PRO
267
A
PRO
268
n
121
PRO
268
A
ASP
269
n
122
ASP
269
A
GLY
270
n
123
GLY
270
A
GLU
271
n
124
GLU
271
A
PHE
272
n
125
PHE
272
A
GLU
273
n
126
GLU
273
A
LEU
274
n
127
LEU
274
A
MET
275
n
128
MET
275
A
ARG
276
n
129
ARG
276
A
TYR
277
n
130
TYR
277
A
ARG
278
n
131
ARG
278
A
THR
279
n
132
THR
279
A
THR
280
n
133
THR
280
A
LYS
281
n
134
LYS
281
A
ASP
282
n
135
ASP
282
A
ILE
283
n
136
ILE
283
A
ILE
284
n
137
ILE
284
A
LEU
285
n
138
LEU
285
A
PRO
286
n
139
PRO
286
A
PHE
287
n
140
PHE
287
A
ARG
288
n
141
ARG
288
A
VAL
289
n
142
VAL
289
A
ILE
290
n
143
ILE
290
A
PRO
291
n
144
PRO
291
A
LEU
292
n
145
LEU
292
A
VAL
293
n
146
VAL
293
A
ARG
294
n
147
ARG
294
A
GLU
295
n
148
GLU
295
A
VAL
296
n
149
VAL
296
A
GLY
297
n
150
GLY
297
A
ARG
298
n
151
ARG
298
A
THR
299
n
152
THR
299
A
LYS
300
n
153
LYS
300
A
LEU
301
n
154
LEU
301
A
GLU
302
n
155
GLU
302
A
VAL
303
n
156
VAL
303
A
LYS
304
n
157
LYS
304
A
VAL
305
n
158
VAL
305
A
VAL
306
n
159
VAL
306
A
ILE
307
n
160
ILE
307
A
LYS
308
n
161
LYS
308
A
SER
309
n
162
SER
309
A
ASN
310
n
163
ASN
310
A
PHE
311
n
164
PHE
311
A
LYS
312
n
165
LYS
312
A
PRO
313
n
166
PRO
313
A
SER
314
n
167
SER
314
A
LEU
315
n
168
LEU
315
A
LEU
316
n
169
LEU
316
A
ALA
317
n
170
ALA
317
A
GLN
318
n
171
GLN
318
A
LYS
319
n
172
LYS
319
A
ILE
320
n
173
ILE
320
A
GLU
321
n
174
GLU
321
A
VAL
322
n
175
VAL
322
A
ARG
323
n
176
ARG
323
A
ILE
324
n
177
ILE
324
A
PRO
325
n
178
PRO
325
A
THR
326
n
179
THR
326
A
PRO
327
n
180
PRO
327
A
LEU
328
n
181
LEU
328
A
ASN
329
n
182
ASN
329
A
THR
330
n
183
THR
330
A
SER
331
n
184
SER
331
A
GLY
332
n
185
GLY
332
A
VAL
333
n
186
VAL
333
A
GLN
334
n
187
GLN
334
A
VAL
335
n
188
VAL
335
A
ILE
336
n
189
ILE
336
A
CYS
337
n
190
CYS
337
A
MET
338
n
191
MET
338
A
LYS
339
n
192
LYS
339
A
GLY
340
n
193
GLY
340
A
LYS
341
n
194
LYS
341
A
ALA
342
n
195
ALA
342
A
LYS
343
n
196
LYS
343
A
TYR
344
n
197
TYR
344
A
LYS
345
n
198
LYS
345
A
ALA
346
n
199
ALA
346
A
SER
347
n
200
SER
347
A
GLU
348
n
201
GLU
348
A
ASN
349
n
202
ASN
349
A
ALA
350
n
203
ALA
350
A
ILE
351
n
204
ILE
351
A
VAL
352
n
205
VAL
352
A
TRP
353
n
206
TRP
353
A
LYS
354
n
207
LYS
354
A
ILE
355
n
208
ILE
355
A
LYS
356
n
209
LYS
356
A
ARG
357
n
210
ARG
357
A
MET
358
n
211
MET
358
A
ALA
359
n
212
ALA
359
A
GLY
360
n
213
GLY
360
A
MET
361
n
214
MET
361
A
LYS
362
n
215
LYS
362
A
GLU
363
n
216
GLU
363
A
SER
364
n
217
SER
364
A
GLN
365
n
218
GLN
365
A
ILE
366
n
219
ILE
366
A
SER
367
n
220
SER
367
A
ALA
368
n
221
ALA
368
A
GLU
369
n
222
GLU
369
A
ILE
370
n
223
ILE
370
A
GLU
371
n
224
GLU
371
A
LEU
372
n
225
LEU
372
A
LEU
373
n
226
LEU
373
A
PRO
374
n
227
PRO
374
A
THR
375
n
228
THR
375
A
n
229
376
A
n
230
377
A
n
231
378
A
n
232
379
A
n
233
380
A
n
234
381
A
n
235
382
A
n
236
383
A
PRO
384
n
237
PRO
384
A
PRO
385
n
238
PRO
385
A
ILE
386
n
239
ILE
386
A
SER
387
n
240
SER
387
A
MET
388
n
241
MET
388
A
ASN
389
n
242
ASN
389
A
PHE
390
n
243
PHE
390
A
GLU
391
n
244
GLU
391
A
VAL
392
n
245
VAL
392
A
PRO
393
n
246
PRO
393
A
PHE
394
n
247
PHE
394
A
ALA
395
n
248
ALA
395
A
PRO
396
n
249
PRO
396
A
SER
397
n
250
SER
397
A
GLY
398
n
251
GLY
398
A
LEU
399
n
252
LEU
399
A
LYS
400
n
253
LYS
400
A
VAL
401
n
254
VAL
401
A
ARG
402
n
255
ARG
402
A
TYR
403
n
256
TYR
403
A
LEU
404
n
257
LEU
404
A
LYS
405
n
258
LYS
405
A
VAL
406
n
259
VAL
406
A
PHE
407
n
260
PHE
407
A
GLU
408
n
261
GLU
408
A
PRO
409
n
262
PRO
409
A
LYS
410
n
263
LYS
410
A
LEU
411
n
264
LEU
411
A
ASN
412
n
265
ASN
412
A
TYR
413
n
266
TYR
413
A
SER
414
n
267
SER
414
A
ASP
415
n
268
ASP
415
A
HIS
416
n
269
HIS
416
A
ASP
417
n
270
ASP
417
A
VAL
418
n
271
VAL
418
A
ILE
419
n
272
ILE
419
A
LYS
420
n
273
LYS
420
A
TRP
421
n
274
TRP
421
A
VAL
422
n
275
VAL
422
A
ARG
423
n
276
ARG
423
A
TYR
424
n
277
TYR
424
A
ILE
425
n
278
ILE
425
A
GLY
426
n
279
GLY
426
A
ARG
427
n
280
ARG
427
A
SER
428
n
281
SER
428
A
GLY
429
n
282
GLY
429
A
ILE
430
n
283
ILE
430
A
TYR
431
n
284
TYR
431
A
GLU
432
n
285
GLU
432
A
THR
433
n
286
THR
433
A
ARG
434
n
287
ARG
434
A
CYS
435
n
288
CYS
435
A
THR
197
n
1
THR
197
P
THR
198
n
2
THR
198
P
GLY
199
n
3
GLY
199
P
VAL
200
n
4
VAL
200
P
TYR
201
n
5
TYR
201
P
VAL
202
n
6
VAL
202
P
LYS
203
n
7
LYS
203
P
MET
204
n
8
MET
204
P
PRO
205
n
9
PRO
205
P
PRO
206
n
10
PRO
206
P
n
11
207
P
author_and_software_defined_assembly
PQS
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
HIS
195
A
N
HIS
48
A
O
ASN
182
A
O
ASN
35
A
N
LEU
173
A
N
LEU
26
A
O
ILE
419
A
O
ILE
272
A
N
HIS
195
A
N
HIS
48
A
O
ASN
182
A
O
ASN
35
A
N
LEU
178
A
N
LEU
31
A
O
ARG
199
A
O
ARG
52
A
N
MET
202
A
N
MET
55
A
O
PHE
272
A
O
PHE
125
A
N
PHE
265
A
N
PHE
118
A
O
CYS
212
A
O
CYS
65
A
N
LYS
213
A
N
LYS
66
A
O
LYS
405
A
O
LYS
258
A
N
ARG
294
A
N
ARG
147
A
O
GLU
302
A
O
GLU
155
A
N
ILE
307
A
N
ILE
160
A
O
SER
364
A
O
SER
217
A
N
GLU
371
A
N
GLU
224
A
O
GLY
332
A
O
GLY
185
1
A
CG
ARG
298
A
CG
ARG
151
1
Y
1
A
CD
ARG
298
A
CD
ARG
151
1
Y
1
A
NE
ARG
298
A
NE
ARG
151
1
Y
1
A
CZ
ARG
298
A
CZ
ARG
151
1
Y
1
A
NH1
ARG
298
A
NH1
ARG
151
1
Y
1
A
NH2
ARG
298
A
NH2
ARG
151
1
Y
1
A
CB
HIS
416
A
CB
HIS
269
1
Y
1
A
CG
HIS
416
A
CG
HIS
269
1
Y
1
A
ND1
HIS
416
A
ND1
HIS
269
1
Y
1
A
CD2
HIS
416
A
CD2
HIS
269
1
Y
1
A
CE1
HIS
416
A
CE1
HIS
269
1
Y
1
A
NE2
HIS
416
A
NE2
HIS
269
1
Y
1
A
HIS
148
A
HIS
1
1
Y
1
A
HIS
149
A
HIS
2
1
Y
1
A
HIS
150
A
HIS
3
1
Y
1
A
HIS
151
A
HIS
4
1
Y
1
A
HIS
152
A
HIS
5
1
Y
1
A
HIS
153
A
HIS
6
1
Y
1
A
GLU
154
A
GLU
7
1
Y
1
A
GLN
155
A
GLN
8
1
Y
1
A
LYS
156
A
LYS
9
1
Y
1
A
LEU
157
A
LEU
10
1
Y
1
A
ILE
158
A
ILE
11
1
Y
1
A
SER
159
A
SER
12
1
Y
1
A
GLU
160
A
GLU
13
1
Y
1
A
GLU
161
A
GLU
14
1
Y
1
A
ASP
162
A
ASP
15
1
Y
1
A
LEU
163
A
LEU
16
1
Y
1
A
GLU
164
A
GLU
17
1
Y
1
A
GLY
165
A
GLY
18
1
Y
1
A
LYS
219
A
LYS
72
1
Y
1
A
ILE
220
A
ILE
73
1
Y
1
A
VAL
221
A
VAL
74
1
Y
1
A
ILE
222
A
ILE
75
1
Y
1
A
GLU
223
A
GLU
76
1
Y
1
A
LYS
224
A
LYS
77
1
Y
1
A
GLN
225
A
GLN
78
1
Y
1
A
GLY
226
A
GLY
79
1
Y
1
A
LYS
227
A
LYS
80
1
Y
1
A
GLY
228
A
GLY
81
1
Y
1
A
THR
229
A
THR
82
1
Y
1
A
ALA
230
A
ALA
83
1
Y
1
A
ASP
231
A
ASP
84
1
Y
1
A
GLU
232
A
GLU
85
1
Y
1
A
THR
233
A
THR
86
1
Y
1
A
SER
234
A
SER
87
1
Y
1
A
LYS
235
A
LYS
88
1
Y
1
A
SER
236
A
SER
89
1
Y
1
A
GLY
237
A
GLY
90
1
Y
1
A
LYS
238
A
LYS
91
1
Y
1
A
GLN
239
A
GLN
92
1
Y
1
A
SER
240
A
SER
93
1
Y
1
A
ILE
241
A
ILE
94
1
Y
1
A
ALA
242
A
ALA
95
1
Y
1
A
ILE
243
A
ILE
96
1
Y
1
A
ASP
244
A
ASP
97
1
Y
1
A
ASP
245
A
ASP
98
1
Y
1
A
CYS
246
A
CYS
99
1
Y
1
A
THR
247
A
THR
100
1
Y
1
A
PHE
248
A
PHE
101
1
Y
1
A
HIS
249
A
HIS
102
1
Y
1
A
GLN
250
A
GLN
103
1
Y
1
A
CYS
251
A
CYS
104
1
Y
1
A
VAL
252
A
VAL
105
1
Y
1
A
ARG
253
A
ARG
106
1
Y
1
A
LEU
254
A
LEU
107
1
Y
1
A
SER
255
A
SER
108
1
Y
1
A
LYS
256
A
LYS
109
1
Y
1
A
PHE
257
A
PHE
110
1
Y
1
A
ASP
258
A
ASP
111
1
Y
1
A
SER
259
A
SER
112
1
Y
1
A
GLU
260
A
GLU
113
1
Y
1
A
ARG
261
A
ARG
114
1
Y
1
A
ASN
376
A
ASN
229
1
Y
1
A
ASP
377
A
ASP
230
1
Y
1
A
LYS
378
A
LYS
231
1
Y
1
A
LYS
379
A
LYS
232
1
Y
1
A
LYS
380
A
LYS
233
1
Y
1
A
TRP
381
A
TRP
234
1
Y
1
A
ALA
382
A
ALA
235
1
Y
1
A
ARG
383
A
ARG
236
1
Y
1
P
THR
207
B
THR
11
1
Y
1
10.99
1.50
119.30
130.29
A
A
A
C
N
CA
ILE
PRO
PRO
266
267
267
Y
1
A
LYS
167
-163.53
118.82
1
A
LEU
184
-163.01
95.84
1
A
LEU
192
-37.28
-32.39
1
A
HIS
195
176.61
171.03
1
A
TYR
205
-151.81
79.22
1
A
MET
216
170.96
-165.98
1
A
ASN
217
-111.65
-135.46
1
A
PHE
265
-179.05
-178.78
1
A
PRO
268
-66.03
63.88
1
A
ASP
269
-5.91
101.84
1
A
GLU
273
-64.96
99.90
1
A
LEU
274
-47.81
-83.11
1
A
MET
275
-117.90
-158.98
1
A
ARG
276
-172.10
97.30
1
A
ARG
278
-164.53
70.68
1
A
VAL
296
-146.35
-121.74
1
A
ARG
298
-159.02
8.61
1
A
ASN
310
-101.30
59.41
1
A
LYS
312
-27.91
114.76
1
A
PRO
313
-46.80
-19.38
1
A
ASN
329
-92.89
34.01
1
A
MET
338
-46.92
-18.22
1
A
LYS
341
-174.72
109.67
1
A
ASN
349
77.46
71.60
1
A
ILE
351
-103.84
72.46
1
A
LYS
356
-58.24
-70.14
1
A
SER
364
-166.42
115.35
1
A
LEU
372
-59.19
-175.51
1
A
PHE
390
178.33
149.85
1
A
ASN
412
-68.37
3.72
1
A
HIS
416
-71.40
32.33
1
A
TYR
431
-114.28
69.03
1
P
THR
198
-146.91
-26.05
1
P
PRO
205
-102.35
60.63
PROTEIN_REP.PARAM
PROTEIN.TOP
39.6
0.00
0.00
0.00
0.00
0.00
0.00
0.317
0.013
0.278
3.60
7.99
603
5400
11.2
74.4
RANDOM
1
GROUP
THROUGHOUT
0.0
FOURIER SYNTHESIS
PDB ENTRY 1BXX
FLAT MODEL
10
0.14399
0.47
0.46
5.00
1.21
1.44
3.60
7.99
0
1817
0
0
1817
0.008
1.4
25.7
1.09
0.566
0.067
0.626
3.80
72
619
6
10.4
57.9
0.0
3.600
48.200
1H6E
6681
0.13300
1
4.0000
2.200
83.2
0.35400
3.60
3.80
1.700
1
2.10
85.9
refinement
CNX
2000
data reduction
MOSFLM
data scaling
SCALA
phasing
CCP4
MU2 ADAPTIN SUBUNIT (AP50) OF AP2 ADAPTOR (SECOND DOMAIN), COMPLEXED WITH CTLA-4 INTERNALIZATION PEPTIDE TTGVYVKMPPT
1
N
N
2
N
N
A
SER
414
A
SER
267
HELX_P
A
VAL
418
A
VAL
271
5
1
5
ENDOCYTOSIS/EXOCYTOSIS
ENDOCYTOSIS/EXOCYTOSIS, ENDOCYTOSIS, ADAPTOR, PEPTIDE COMPLEX, PHOSPHORYLATION, ENDOCYTOSIS-EXOCYTOSIS complex
1H6E
PDB
1
1H6E
A2M1_HUMAN
UNP
1
P20172
CTL4_HUMAN
UNP
2
P16410
148
163
1H6E
148
163
1H6E
A
1
1
16
164
435
1H6E
164
435
P20172
A
2
17
288
197
207
1H6E
197
207
P16410
P
3
1
11
3
4
3
4
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
193
A
SER
46
A
VAL
196
A
VAL
49
A
GLU
172
A
GLU
25
A
MET
185
A
MET
38
A
ILE
419
A
ILE
272
A
THR
433
A
THR
286
A
SER
193
A
SER
46
A
VAL
196
A
VAL
49
A
GLU
172
A
GLU
25
A
MET
185
A
MET
38
A
ARG
199
A
ARG
52
A
TYR
205
A
TYR
58
A
GLU
271
A
GLU
124
A
MET
275
A
MET
128
A
SER
264
A
SER
117
A
PHE
265
A
PHE
118
A
CYS
212
A
CYS
65
A
PHE
214
A
PHE
67
A
LEU
404
A
LEU
257
A
LYS
405
A
LYS
258
A
ILE
290
A
ILE
143
A
ARG
294
A
ARG
147
A
LYS
300
A
LYS
153
A
LYS
308
A
LYS
161
A
GLU
363
A
GLU
216
A
GLU
371
A
GLU
224
A
GLY
332
A
GLY
185
A
ILE
336
A
ILE
189
172
P 64