1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Schweimer, K. Hoffmann, S. Wastl, J. Maier, U.G. Roesch, P. Sticht, H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer US Protein Sci. PRCIEI 0795 0961-8368 9 1474 1486 10.1110/ps.9.8.1474 10975569 Solution structure of a zinc substituted eukaryotic rubredoxin from the cryptomonad alga Guillardia theta. 2000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 6717.714 RUBREDOXIN 1 man polymer 65.409 ZINC ION 1 syn non-polymer no no MEIDEGKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSPKNQFKSIKKVI MEIDEGKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSPKNQFKSIKKVI A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample THE RBX-GENE IS ENCODED ON THE G.THETA NUCLEOMORPH (CHROMOSOME II) 55529 55529 NUCLEOMORPH GUILLARDIA THETA 469008 ESCHERICHIA COLI BL21(DE3) PLASMID PET28A pdbx_nmr_representative citation citation_author entity_src_gen struct repository Initial release Version format compliance Version format compliance Structure summary Database references Source and taxonomy Structure summary 1 0 2002-01-29 1 1 2011-05-08 1 2 2011-07-13 1 3 2017-06-14 1 4 2018-01-17 _pdbx_nmr_representative.conformer_id _citation.page_last _citation.pdbx_database_id_DOI _citation.title _citation.year _citation_author.name _entity_src_gen.gene_src_strain _struct.title RUBREDOXIN FROM GUILLARDIA THETA HELIX DETERMINATION METHOD: AUTHOR PROVIDED. SHEET DETERMINATION METHOD: AUTHOR PROVIDED. PDBE Y PDBE 2001-01-16 REL ZN ZINC ION THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY ON 13C, 15N-LABELED, ZINC-SUBSTITUTED RUBREDOXIN LEAST RESTRAINT VIOLATION, LOWEST ENERGY 120 29 1H-1H NOESY 1H-1H TOCSY 1H-15N HSQC 1H-13C CT-HS 15N-EDITED NOESY(3D) 13C-EDITED NOESY(3D) HNCO HNCA HNCACB CBCA(CO)NH HBHA (CO)NH HNHA HCCH-CO 6.4 pH 298 K REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. THE IRON-ATOM PRESENT IN THE NATIVE RUBREDOXIN WAS REPLACE BY ZINC IN ORDER TO AVOID PARAMAGNETIC EFFECTS. simulated annealing 1 BRUNGER refinement X-PLOR structure solution NMRVIEW structure solution NDEE 600 Bruker DRX 600 Bruker DRX ZN 61 2 ZN ZN 61 A MET 1 n 1 MET 1 A GLU 2 n 2 GLU 2 A ILE 3 n 3 ILE 3 A ASP 4 n 4 ASP 4 A GLU 5 n 5 GLU 5 A GLY 6 n 6 GLY 6 A LYS 7 n 7 LYS 7 A TYR 8 n 8 TYR 8 A GLU 9 n 9 GLU 9 A CYS 10 n 10 CYS 10 A GLU 11 n 11 GLU 11 A ALA 12 n 12 ALA 12 A CYS 13 n 13 CYS 13 A GLY 14 n 14 GLY 14 A TYR 15 n 15 TYR 15 A ILE 16 n 16 ILE 16 A TYR 17 n 17 TYR 17 A GLU 18 n 18 GLU 18 A PRO 19 n 19 PRO 19 A GLU 20 n 20 GLU 20 A LYS 21 n 21 LYS 21 A GLY 22 n 22 GLY 22 A ASP 23 n 23 ASP 23 A LYS 24 n 24 LYS 24 A PHE 25 n 25 PHE 25 A ALA 26 n 26 ALA 26 A GLY 27 n 27 GLY 27 A ILE 28 n 28 ILE 28 A PRO 29 n 29 PRO 29 A PRO 30 n 30 PRO 30 A GLY 31 n 31 GLY 31 A THR 32 n 32 THR 32 A PRO 33 n 33 PRO 33 A PHE 34 n 34 PHE 34 A VAL 35 n 35 VAL 35 A ASP 36 n 36 ASP 36 A LEU 37 n 37 LEU 37 A SER 38 n 38 SER 38 A ASP 39 n 39 ASP 39 A SER 40 n 40 SER 40 A PHE 41 n 41 PHE 41 A MET 42 n 42 MET 42 A CYS 43 n 43 CYS 43 A PRO 44 n 44 PRO 44 A ALA 45 n 45 ALA 45 A CYS 46 n 46 CYS 46 A ARG 47 n 47 ARG 47 A SER 48 n 48 SER 48 A PRO 49 n 49 PRO 49 A LYS 50 n 50 LYS 50 A ASN 51 n 51 ASN 51 A GLN 52 n 52 GLN 52 A PHE 53 n 53 PHE 53 A LYS 54 n 54 LYS 54 A SER 55 n 55 SER 55 A ILE 56 n 56 ILE 56 A LYS 57 n 57 LYS 57 A LYS 58 n 58 LYS 58 A VAL 59 n 59 VAL 59 A ILE 60 n 60 ILE 60 A author_defined_assembly 1 monomeric A CYS 10 A SG CYS 10 1_555 A ZN 61 B ZN ZN 1_555 A CYS 43 A SG CYS 43 1_555 109.1 A CYS 10 A SG CYS 10 1_555 A ZN 61 B ZN ZN 1_555 A CYS 46 A SG CYS 46 1_555 109.0 A CYS 43 A SG CYS 43 1_555 A ZN 61 B ZN ZN 1_555 A CYS 46 A SG CYS 46 1_555 109.6 A CYS 10 A SG CYS 10 1_555 A ZN 61 B ZN ZN 1_555 A CYS 13 A SG CYS 13 1_555 109.9 A CYS 43 A SG CYS 43 1_555 A ZN 61 B ZN ZN 1_555 A CYS 13 A SG CYS 13 1_555 109.0 A CYS 46 A SG CYS 46 1_555 A ZN 61 B ZN ZN 1_555 A CYS 13 A SG CYS 13 1_555 110.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O TYR 15 A O TYR 15 A N CYS 10 A N CYS 10 A O GLU 9 A O GLU 9 A N LYS 54 A N LYS 54 2 A A O H PRO GLN 49 52 1.58 3 A A O H PRO GLN 49 52 1.59 5 A A O H PRO GLN 49 52 1.58 7 A A O H PRO GLN 49 52 1.59 7 A A O H ASP ALA 23 26 1.60 13 A A O H PRO GLN 49 52 1.58 15 A A O H PRO GLN 49 52 1.58 17 A A O H PRO GLN 49 52 1.60 20 A A H O ILE LYS 3 58 1.59 22 A A O H PRO GLN 49 52 1.60 23 A A O H PRO GLN 49 52 1.60 25 A A O H PRO GLN 49 52 1.56 26 A A O H PRO GLN 49 52 1.60 28 A A O H ASP ALA 23 26 1.51 28 A A O HG1 PRO THR 29 32 1.59 29 A A O H PRO GLN 49 52 1.59 1 A ARG 47 0.276 SIDE CHAIN 2 A ARG 47 0.118 SIDE CHAIN 3 A ARG 47 0.296 SIDE CHAIN 4 A ARG 47 0.308 SIDE CHAIN 5 A ARG 47 0.289 SIDE CHAIN 6 A ARG 47 0.179 SIDE CHAIN 7 A ARG 47 0.232 SIDE CHAIN 8 A ARG 47 0.166 SIDE CHAIN 9 A ARG 47 0.176 SIDE CHAIN 10 A ARG 47 0.172 SIDE CHAIN 11 A ARG 47 0.220 SIDE CHAIN 12 A ARG 47 0.298 SIDE CHAIN 13 A ARG 47 0.318 SIDE CHAIN 14 A ARG 47 0.312 SIDE CHAIN 15 A ARG 47 0.246 SIDE CHAIN 16 A ARG 47 0.080 SIDE CHAIN 17 A ARG 47 0.215 SIDE CHAIN 18 A ARG 47 0.265 SIDE CHAIN 19 A ARG 47 0.188 SIDE CHAIN 20 A ARG 47 0.169 SIDE CHAIN 21 A ARG 47 0.176 SIDE CHAIN 22 A ARG 47 0.231 SIDE CHAIN 23 A ARG 47 0.223 SIDE CHAIN 24 A ARG 47 0.187 SIDE CHAIN 25 A ARG 47 0.264 SIDE CHAIN 26 A ARG 47 0.204 SIDE CHAIN 27 A ARG 47 0.317 SIDE CHAIN 28 A ARG 47 0.306 SIDE CHAIN 29 A ARG 47 0.220 SIDE CHAIN 1 A GLU 2 179.70 89.86 1 A GLU 5 179.80 -141.67 1 A TYR 15 -49.25 173.40 1 A ASP 23 -85.16 49.96 1 A ALA 26 -90.10 -65.96 1 A LYS 57 -106.74 65.88 2 A GLU 5 -178.11 64.74 2 A ALA 26 -90.50 -65.88 2 A VAL 59 -115.03 55.24 3 A GLU 2 -110.98 71.79 3 A GLU 5 -176.49 -144.17 3 A ALA 26 -93.67 -64.30 3 A LYS 57 -102.97 63.16 4 A GLU 5 -164.85 52.91 4 A ASP 23 -85.15 49.56 4 A ALA 26 -93.79 -61.92 4 A SER 38 -41.40 151.40 4 A ALA 45 -99.24 -67.44 5 A GLU 2 -48.01 153.31 5 A ASP 4 -92.45 -149.57 5 A GLU 5 175.42 -23.08 5 A TYR 15 -52.46 174.34 5 A LYS 57 58.87 94.66 6 A GLU 5 -173.15 60.83 6 A ALA 26 -90.54 -68.52 6 A ALA 45 -98.42 -64.90 6 A LYS 57 -107.42 65.26 7 A GLU 2 -175.41 97.01 7 A GLU 5 175.28 70.95 7 A LYS 57 38.44 73.10 7 A VAL 59 179.90 130.38 8 A GLU 5 175.60 30.89 8 A ALA 45 -98.88 -65.74 8 A ILE 56 -130.47 -44.92 8 A LYS 57 41.85 71.42 8 A VAL 59 -177.04 59.89 9 A GLU 5 178.82 29.22 9 A ASP 23 -85.12 49.81 9 A ALA 26 -93.55 -62.68 9 A ALA 45 -99.23 -67.95 9 A LYS 57 -105.87 65.61 10 A GLU 2 177.03 115.43 10 A GLU 5 -174.82 61.95 10 A ALA 26 -92.25 -65.40 10 A SER 38 -42.02 155.43 10 A ALA 45 -98.99 -65.29 10 A ILE 56 -151.34 86.56 11 A GLU 5 -173.91 61.87 11 A TYR 15 -49.53 172.39 11 A ALA 26 -90.56 -67.47 11 A SER 38 -41.68 151.64 11 A ALA 45 -99.50 -67.52 11 A ILE 56 -141.30 59.95 11 A VAL 59 -163.90 56.00 12 A GLU 2 -168.25 81.76 12 A GLU 5 176.74 69.25 12 A ALA 26 -93.98 -64.63 12 A ALA 45 -98.35 -64.26 12 A LYS 57 37.59 78.67 13 A GLU 2 -170.23 112.15 13 A ILE 3 177.86 171.60 13 A GLU 5 169.96 -71.37 13 A ALA 45 -97.98 -63.67 13 A ILE 56 -139.61 -37.37 13 A LYS 57 40.73 83.54 14 A GLU 2 -163.49 69.20 14 A GLU 5 -119.05 -88.57 14 A TYR 15 -50.64 173.07 14 A ALA 26 -94.30 -62.38 14 A ALA 45 -97.57 -62.74 14 A LYS 57 52.40 93.26 15 A ASP 4 -170.68 142.88 15 A GLU 5 -171.82 -153.71 15 A TYR 15 -49.96 172.32 15 A ALA 26 -92.27 -64.34 15 A ALA 45 -98.36 -64.86 15 A ILE 56 -101.45 -107.35 15 A LYS 57 70.26 94.54 16 A GLU 5 169.70 77.44 16 A ALA 26 -91.58 -66.25 16 A ILE 56 -158.20 -45.62 16 A LYS 57 40.49 80.38 16 A VAL 59 -153.36 55.22 17 A GLU 5 -179.47 -27.60 17 A ALA 26 -91.97 -66.13 17 A ALA 45 -97.60 -61.95 17 A LYS 57 49.32 89.43 18 A ILE 3 63.36 167.93 18 A ALA 26 -92.80 -65.75 18 A SER 38 -42.21 159.68 18 A ALA 45 -99.04 -65.81 18 A LYS 57 63.96 97.63 19 A GLU 2 61.35 123.06 19 A ASP 4 -135.26 -153.78 19 A GLU 5 -178.21 58.93 19 A LYS 57 50.97 92.86 20 A GLU 2 57.07 177.01 20 A GLU 5 178.70 -26.82 20 A ALA 26 -90.99 -65.83 20 A ALA 45 -98.64 -65.02 20 A LYS 57 61.26 95.55 21 A GLU 2 57.94 109.40 21 A ALA 26 -93.07 -63.75 21 A ALA 45 -98.34 -64.31 21 A LYS 57 66.99 98.39 22 A GLU 5 -174.23 60.02 22 A ALA 26 -95.38 -61.99 22 A PRO 44 -82.80 36.18 22 A ALA 45 -151.92 -50.31 22 A LYS 57 -91.80 58.52 22 A LYS 58 -116.40 63.76 23 A ILE 3 171.29 171.97 23 A GLU 5 -117.50 -88.68 23 A ALA 26 -95.11 -63.50 23 A SER 38 -43.01 164.83 23 A ALA 45 -98.69 -65.16 23 A LYS 57 55.15 94.53 24 A ASP 4 -116.09 -167.68 24 A GLU 5 175.26 -25.36 24 A ALA 26 -91.97 -65.30 24 A SER 38 -41.34 152.74 24 A LYS 57 60.15 95.28 25 A GLU 2 174.67 104.29 25 A ASP 4 165.68 -20.51 25 A ALA 26 -95.08 -62.15 25 A PRO 44 -81.73 34.81 25 A ALA 45 -150.81 -48.72 25 A ILE 56 -153.57 89.30 25 A LYS 57 -113.66 64.18 26 A GLU 2 46.28 87.44 26 A GLU 5 -145.39 38.30 26 A PRO 44 -82.76 36.39 26 A ALA 45 -151.83 -49.36 26 A LYS 57 58.84 97.05 26 A LYS 58 -62.42 74.41 27 A GLU 2 51.52 88.45 27 A ASP 4 -150.92 11.48 27 A LYS 57 -106.31 68.62 28 A GLU 2 54.40 -176.88 28 A TYR 15 -50.43 171.65 28 A LYS 57 52.18 87.32 29 A GLU 2 -100.47 79.96 29 A GLU 5 -179.03 36.58 29 A LYS 7 8.51 108.00 29 A TYR 15 -48.39 173.29 29 A ALA 26 -97.09 -60.11 29 A SER 38 -42.06 155.64 29 A ALA 45 -97.82 -62.57 RUBREDOXIN Rubredoxin from Guillardia Theta 1 N N 2 N N A PRO 33 A PRO 33 HELX_P A LEU 37 A LEU 37 5 1 5 metalc 2.352 A ZN 61 B ZN ZN 1_555 A CYS 10 A SG CYS 10 1_555 metalc 2.351 A ZN 61 B ZN ZN 1_555 A CYS 43 A SG CYS 43 1_555 metalc 2.352 A ZN 61 B ZN ZN 1_555 A CYS 46 A SG CYS 46 1_555 metalc 2.353 A ZN 61 B ZN ZN 1_555 A CYS 13 A SG CYS 13 1_555 ELECTRON TRANSPORT ELECTRON TRANSPORT, RUBREDOXIN, GUILLARDIA THETA, ZINC- SUBSTITUTION, DIPOLAR COUPLINGS Q9XG40 UNP 1 Q9XG40 57 116 1H7V 1 60 Q9XG40 A 1 1 60 3 anti-parallel anti-parallel A TYR 15 A TYR 15 A TYR 17 A TYR 17 A TYR 8 A TYR 8 A CYS 10 A CYS 10 A PHE 53 A PHE 53 A SER 55 A SER 55 BINDING SITE FOR RESIDUE ZN A 61 Software 4 A CYS 10 A CYS 10 4 1_555 A CYS 13 A CYS 13 4 1_555 A CYS 43 A CYS 43 4 1_555 A CYS 46 A CYS 46 4 1_555 1 P 1