1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Schweimer, K.
Hoffmann, S.
Wastl, J.
Maier, U.G.
Roesch, P.
Sticht, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
US
Protein Sci.
PRCIEI
0795
0961-8368
9
1474
1486
10.1110/ps.9.8.1474
10975569
Solution structure of a zinc substituted eukaryotic rubredoxin from the cryptomonad alga Guillardia theta.
2000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
6717.714
RUBREDOXIN
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
no
no
MEIDEGKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSPKNQFKSIKKVI
MEIDEGKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSPKNQFKSIKKVI
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
THE RBX-GENE IS ENCODED ON THE G.THETA NUCLEOMORPH (CHROMOSOME II)
55529
55529
NUCLEOMORPH
GUILLARDIA THETA
469008
ESCHERICHIA COLI
BL21(DE3)
PLASMID
PET28A
pdbx_nmr_representative
citation
citation_author
entity_src_gen
struct
repository
Initial release
Version format compliance
Version format compliance
Structure summary
Database references
Source and taxonomy
Structure summary
1
0
2002-01-29
1
1
2011-05-08
1
2
2011-07-13
1
3
2017-06-14
1
4
2018-01-17
_pdbx_nmr_representative.conformer_id
_citation.page_last
_citation.pdbx_database_id_DOI
_citation.title
_citation.year
_citation_author.name
_entity_src_gen.gene_src_strain
_struct.title
RUBREDOXIN FROM GUILLARDIA THETA
HELIX
DETERMINATION METHOD: AUTHOR PROVIDED.
SHEET
DETERMINATION METHOD: AUTHOR PROVIDED.
PDBE
Y
PDBE
2001-01-16
REL
ZN
ZINC ION
THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY ON 13C, 15N-LABELED, ZINC-SUBSTITUTED RUBREDOXIN
LEAST RESTRAINT VIOLATION, LOWEST ENERGY
120
29
1H-1H NOESY
1H-1H TOCSY 1H-15N HSQC
1H-13C CT-HS 15N-EDITED NOESY(3D)
13C-EDITED NOESY(3D) HNCO HNCA
HNCACB
CBCA(CO)NH HBHA (CO)NH
HNHA
HCCH-CO
6.4
pH
298
K
REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. THE IRON-ATOM PRESENT IN THE NATIVE RUBREDOXIN WAS REPLACE BY ZINC IN ORDER TO AVOID PARAMAGNETIC EFFECTS.
simulated annealing
1
BRUNGER
refinement
X-PLOR
structure solution
NMRVIEW
structure solution
NDEE
600
Bruker
DRX
600
Bruker
DRX
ZN
61
2
ZN
ZN
61
A
MET
1
n
1
MET
1
A
GLU
2
n
2
GLU
2
A
ILE
3
n
3
ILE
3
A
ASP
4
n
4
ASP
4
A
GLU
5
n
5
GLU
5
A
GLY
6
n
6
GLY
6
A
LYS
7
n
7
LYS
7
A
TYR
8
n
8
TYR
8
A
GLU
9
n
9
GLU
9
A
CYS
10
n
10
CYS
10
A
GLU
11
n
11
GLU
11
A
ALA
12
n
12
ALA
12
A
CYS
13
n
13
CYS
13
A
GLY
14
n
14
GLY
14
A
TYR
15
n
15
TYR
15
A
ILE
16
n
16
ILE
16
A
TYR
17
n
17
TYR
17
A
GLU
18
n
18
GLU
18
A
PRO
19
n
19
PRO
19
A
GLU
20
n
20
GLU
20
A
LYS
21
n
21
LYS
21
A
GLY
22
n
22
GLY
22
A
ASP
23
n
23
ASP
23
A
LYS
24
n
24
LYS
24
A
PHE
25
n
25
PHE
25
A
ALA
26
n
26
ALA
26
A
GLY
27
n
27
GLY
27
A
ILE
28
n
28
ILE
28
A
PRO
29
n
29
PRO
29
A
PRO
30
n
30
PRO
30
A
GLY
31
n
31
GLY
31
A
THR
32
n
32
THR
32
A
PRO
33
n
33
PRO
33
A
PHE
34
n
34
PHE
34
A
VAL
35
n
35
VAL
35
A
ASP
36
n
36
ASP
36
A
LEU
37
n
37
LEU
37
A
SER
38
n
38
SER
38
A
ASP
39
n
39
ASP
39
A
SER
40
n
40
SER
40
A
PHE
41
n
41
PHE
41
A
MET
42
n
42
MET
42
A
CYS
43
n
43
CYS
43
A
PRO
44
n
44
PRO
44
A
ALA
45
n
45
ALA
45
A
CYS
46
n
46
CYS
46
A
ARG
47
n
47
ARG
47
A
SER
48
n
48
SER
48
A
PRO
49
n
49
PRO
49
A
LYS
50
n
50
LYS
50
A
ASN
51
n
51
ASN
51
A
GLN
52
n
52
GLN
52
A
PHE
53
n
53
PHE
53
A
LYS
54
n
54
LYS
54
A
SER
55
n
55
SER
55
A
ILE
56
n
56
ILE
56
A
LYS
57
n
57
LYS
57
A
LYS
58
n
58
LYS
58
A
VAL
59
n
59
VAL
59
A
ILE
60
n
60
ILE
60
A
author_defined_assembly
1
monomeric
A
CYS
10
A
SG
CYS
10
1_555
A
ZN
61
B
ZN
ZN
1_555
A
CYS
43
A
SG
CYS
43
1_555
109.1
A
CYS
10
A
SG
CYS
10
1_555
A
ZN
61
B
ZN
ZN
1_555
A
CYS
46
A
SG
CYS
46
1_555
109.0
A
CYS
43
A
SG
CYS
43
1_555
A
ZN
61
B
ZN
ZN
1_555
A
CYS
46
A
SG
CYS
46
1_555
109.6
A
CYS
10
A
SG
CYS
10
1_555
A
ZN
61
B
ZN
ZN
1_555
A
CYS
13
A
SG
CYS
13
1_555
109.9
A
CYS
43
A
SG
CYS
43
1_555
A
ZN
61
B
ZN
ZN
1_555
A
CYS
13
A
SG
CYS
13
1_555
109.0
A
CYS
46
A
SG
CYS
46
1_555
A
ZN
61
B
ZN
ZN
1_555
A
CYS
13
A
SG
CYS
13
1_555
110.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
TYR
15
A
O
TYR
15
A
N
CYS
10
A
N
CYS
10
A
O
GLU
9
A
O
GLU
9
A
N
LYS
54
A
N
LYS
54
2
A
A
O
H
PRO
GLN
49
52
1.58
3
A
A
O
H
PRO
GLN
49
52
1.59
5
A
A
O
H
PRO
GLN
49
52
1.58
7
A
A
O
H
PRO
GLN
49
52
1.59
7
A
A
O
H
ASP
ALA
23
26
1.60
13
A
A
O
H
PRO
GLN
49
52
1.58
15
A
A
O
H
PRO
GLN
49
52
1.58
17
A
A
O
H
PRO
GLN
49
52
1.60
20
A
A
H
O
ILE
LYS
3
58
1.59
22
A
A
O
H
PRO
GLN
49
52
1.60
23
A
A
O
H
PRO
GLN
49
52
1.60
25
A
A
O
H
PRO
GLN
49
52
1.56
26
A
A
O
H
PRO
GLN
49
52
1.60
28
A
A
O
H
ASP
ALA
23
26
1.51
28
A
A
O
HG1
PRO
THR
29
32
1.59
29
A
A
O
H
PRO
GLN
49
52
1.59
1
A
ARG
47
0.276
SIDE CHAIN
2
A
ARG
47
0.118
SIDE CHAIN
3
A
ARG
47
0.296
SIDE CHAIN
4
A
ARG
47
0.308
SIDE CHAIN
5
A
ARG
47
0.289
SIDE CHAIN
6
A
ARG
47
0.179
SIDE CHAIN
7
A
ARG
47
0.232
SIDE CHAIN
8
A
ARG
47
0.166
SIDE CHAIN
9
A
ARG
47
0.176
SIDE CHAIN
10
A
ARG
47
0.172
SIDE CHAIN
11
A
ARG
47
0.220
SIDE CHAIN
12
A
ARG
47
0.298
SIDE CHAIN
13
A
ARG
47
0.318
SIDE CHAIN
14
A
ARG
47
0.312
SIDE CHAIN
15
A
ARG
47
0.246
SIDE CHAIN
16
A
ARG
47
0.080
SIDE CHAIN
17
A
ARG
47
0.215
SIDE CHAIN
18
A
ARG
47
0.265
SIDE CHAIN
19
A
ARG
47
0.188
SIDE CHAIN
20
A
ARG
47
0.169
SIDE CHAIN
21
A
ARG
47
0.176
SIDE CHAIN
22
A
ARG
47
0.231
SIDE CHAIN
23
A
ARG
47
0.223
SIDE CHAIN
24
A
ARG
47
0.187
SIDE CHAIN
25
A
ARG
47
0.264
SIDE CHAIN
26
A
ARG
47
0.204
SIDE CHAIN
27
A
ARG
47
0.317
SIDE CHAIN
28
A
ARG
47
0.306
SIDE CHAIN
29
A
ARG
47
0.220
SIDE CHAIN
1
A
GLU
2
179.70
89.86
1
A
GLU
5
179.80
-141.67
1
A
TYR
15
-49.25
173.40
1
A
ASP
23
-85.16
49.96
1
A
ALA
26
-90.10
-65.96
1
A
LYS
57
-106.74
65.88
2
A
GLU
5
-178.11
64.74
2
A
ALA
26
-90.50
-65.88
2
A
VAL
59
-115.03
55.24
3
A
GLU
2
-110.98
71.79
3
A
GLU
5
-176.49
-144.17
3
A
ALA
26
-93.67
-64.30
3
A
LYS
57
-102.97
63.16
4
A
GLU
5
-164.85
52.91
4
A
ASP
23
-85.15
49.56
4
A
ALA
26
-93.79
-61.92
4
A
SER
38
-41.40
151.40
4
A
ALA
45
-99.24
-67.44
5
A
GLU
2
-48.01
153.31
5
A
ASP
4
-92.45
-149.57
5
A
GLU
5
175.42
-23.08
5
A
TYR
15
-52.46
174.34
5
A
LYS
57
58.87
94.66
6
A
GLU
5
-173.15
60.83
6
A
ALA
26
-90.54
-68.52
6
A
ALA
45
-98.42
-64.90
6
A
LYS
57
-107.42
65.26
7
A
GLU
2
-175.41
97.01
7
A
GLU
5
175.28
70.95
7
A
LYS
57
38.44
73.10
7
A
VAL
59
179.90
130.38
8
A
GLU
5
175.60
30.89
8
A
ALA
45
-98.88
-65.74
8
A
ILE
56
-130.47
-44.92
8
A
LYS
57
41.85
71.42
8
A
VAL
59
-177.04
59.89
9
A
GLU
5
178.82
29.22
9
A
ASP
23
-85.12
49.81
9
A
ALA
26
-93.55
-62.68
9
A
ALA
45
-99.23
-67.95
9
A
LYS
57
-105.87
65.61
10
A
GLU
2
177.03
115.43
10
A
GLU
5
-174.82
61.95
10
A
ALA
26
-92.25
-65.40
10
A
SER
38
-42.02
155.43
10
A
ALA
45
-98.99
-65.29
10
A
ILE
56
-151.34
86.56
11
A
GLU
5
-173.91
61.87
11
A
TYR
15
-49.53
172.39
11
A
ALA
26
-90.56
-67.47
11
A
SER
38
-41.68
151.64
11
A
ALA
45
-99.50
-67.52
11
A
ILE
56
-141.30
59.95
11
A
VAL
59
-163.90
56.00
12
A
GLU
2
-168.25
81.76
12
A
GLU
5
176.74
69.25
12
A
ALA
26
-93.98
-64.63
12
A
ALA
45
-98.35
-64.26
12
A
LYS
57
37.59
78.67
13
A
GLU
2
-170.23
112.15
13
A
ILE
3
177.86
171.60
13
A
GLU
5
169.96
-71.37
13
A
ALA
45
-97.98
-63.67
13
A
ILE
56
-139.61
-37.37
13
A
LYS
57
40.73
83.54
14
A
GLU
2
-163.49
69.20
14
A
GLU
5
-119.05
-88.57
14
A
TYR
15
-50.64
173.07
14
A
ALA
26
-94.30
-62.38
14
A
ALA
45
-97.57
-62.74
14
A
LYS
57
52.40
93.26
15
A
ASP
4
-170.68
142.88
15
A
GLU
5
-171.82
-153.71
15
A
TYR
15
-49.96
172.32
15
A
ALA
26
-92.27
-64.34
15
A
ALA
45
-98.36
-64.86
15
A
ILE
56
-101.45
-107.35
15
A
LYS
57
70.26
94.54
16
A
GLU
5
169.70
77.44
16
A
ALA
26
-91.58
-66.25
16
A
ILE
56
-158.20
-45.62
16
A
LYS
57
40.49
80.38
16
A
VAL
59
-153.36
55.22
17
A
GLU
5
-179.47
-27.60
17
A
ALA
26
-91.97
-66.13
17
A
ALA
45
-97.60
-61.95
17
A
LYS
57
49.32
89.43
18
A
ILE
3
63.36
167.93
18
A
ALA
26
-92.80
-65.75
18
A
SER
38
-42.21
159.68
18
A
ALA
45
-99.04
-65.81
18
A
LYS
57
63.96
97.63
19
A
GLU
2
61.35
123.06
19
A
ASP
4
-135.26
-153.78
19
A
GLU
5
-178.21
58.93
19
A
LYS
57
50.97
92.86
20
A
GLU
2
57.07
177.01
20
A
GLU
5
178.70
-26.82
20
A
ALA
26
-90.99
-65.83
20
A
ALA
45
-98.64
-65.02
20
A
LYS
57
61.26
95.55
21
A
GLU
2
57.94
109.40
21
A
ALA
26
-93.07
-63.75
21
A
ALA
45
-98.34
-64.31
21
A
LYS
57
66.99
98.39
22
A
GLU
5
-174.23
60.02
22
A
ALA
26
-95.38
-61.99
22
A
PRO
44
-82.80
36.18
22
A
ALA
45
-151.92
-50.31
22
A
LYS
57
-91.80
58.52
22
A
LYS
58
-116.40
63.76
23
A
ILE
3
171.29
171.97
23
A
GLU
5
-117.50
-88.68
23
A
ALA
26
-95.11
-63.50
23
A
SER
38
-43.01
164.83
23
A
ALA
45
-98.69
-65.16
23
A
LYS
57
55.15
94.53
24
A
ASP
4
-116.09
-167.68
24
A
GLU
5
175.26
-25.36
24
A
ALA
26
-91.97
-65.30
24
A
SER
38
-41.34
152.74
24
A
LYS
57
60.15
95.28
25
A
GLU
2
174.67
104.29
25
A
ASP
4
165.68
-20.51
25
A
ALA
26
-95.08
-62.15
25
A
PRO
44
-81.73
34.81
25
A
ALA
45
-150.81
-48.72
25
A
ILE
56
-153.57
89.30
25
A
LYS
57
-113.66
64.18
26
A
GLU
2
46.28
87.44
26
A
GLU
5
-145.39
38.30
26
A
PRO
44
-82.76
36.39
26
A
ALA
45
-151.83
-49.36
26
A
LYS
57
58.84
97.05
26
A
LYS
58
-62.42
74.41
27
A
GLU
2
51.52
88.45
27
A
ASP
4
-150.92
11.48
27
A
LYS
57
-106.31
68.62
28
A
GLU
2
54.40
-176.88
28
A
TYR
15
-50.43
171.65
28
A
LYS
57
52.18
87.32
29
A
GLU
2
-100.47
79.96
29
A
GLU
5
-179.03
36.58
29
A
LYS
7
8.51
108.00
29
A
TYR
15
-48.39
173.29
29
A
ALA
26
-97.09
-60.11
29
A
SER
38
-42.06
155.64
29
A
ALA
45
-97.82
-62.57
RUBREDOXIN
Rubredoxin from Guillardia Theta
1
N
N
2
N
N
A
PRO
33
A
PRO
33
HELX_P
A
LEU
37
A
LEU
37
5
1
5
metalc
2.352
A
ZN
61
B
ZN
ZN
1_555
A
CYS
10
A
SG
CYS
10
1_555
metalc
2.351
A
ZN
61
B
ZN
ZN
1_555
A
CYS
43
A
SG
CYS
43
1_555
metalc
2.352
A
ZN
61
B
ZN
ZN
1_555
A
CYS
46
A
SG
CYS
46
1_555
metalc
2.353
A
ZN
61
B
ZN
ZN
1_555
A
CYS
13
A
SG
CYS
13
1_555
ELECTRON TRANSPORT
ELECTRON TRANSPORT, RUBREDOXIN, GUILLARDIA THETA, ZINC- SUBSTITUTION, DIPOLAR COUPLINGS
Q9XG40
UNP
1
Q9XG40
57
116
1H7V
1
60
Q9XG40
A
1
1
60
3
anti-parallel
anti-parallel
A
TYR
15
A
TYR
15
A
TYR
17
A
TYR
17
A
TYR
8
A
TYR
8
A
CYS
10
A
CYS
10
A
PHE
53
A
PHE
53
A
SER
55
A
SER
55
BINDING SITE FOR RESIDUE ZN A 61
Software
4
A
CYS
10
A
CYS
10
4
1_555
A
CYS
13
A
CYS
13
4
1_555
A
CYS
43
A
CYS
43
4
1_555
A
CYS
46
A
CYS
46
4
1_555
1
P 1