0.011003
0.006353
0.000000
0.000000
0.012706
0.000000
0.000000
0.000000
0.019153
0.00000
0.00000
0.00000
Wah, D.A.
Fernandez-Tornero, C.
Calvete, J.J.
Romero, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
90.881
90.881
52.210
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H15 N O4 P 1
184.151
PHOSPHOCHOLINE
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Structure
STRUE6
2005
0969-2126
10
505
10.1016/S0969-2126(02)00751-7
11937055
Sperm Coating Mechanism from the 1.8 A Crystal Structure of Pdc-109-Phosphorylcholine Complex
2002
US
Proteins: Struct.,Funct., Genet.
PSFGEY
0867
0887-3585
28
454
10.1002/(SICI)1097-0134(199707)28:3<454::AID-PROT14>3.0.CO;2-G
9223190
Crystallization and Preliminary X-Ray Diffraction Analysis of Bovine Seminal Plasma Pdc-109, a Protein Composed of Two Fibronectin Type II Domains
1997
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
TOROIDAL MIRROR
IMAGE PLATE
2000-05-15
MARRESEARCH
SI(111)
MAD
M
x-ray
1
1.07466
1.0
1.07516
1.0
0.8856
1.0
1.05271
1.0
X31
EMBL/DESY, HAMBURG
1.07466,1.07516,0.8856, 1.05271
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE X31
12811.352
SEMINAL PLASMA PROTEIN PDC-109
RESIDUES 26-134
2
nat
polymer
184.151
PHOSPHOCHOLINE
4
syn
non-polymer
18.015
water
205
nat
water
no
no
DQDEGVSTEPTQDGPAELPEDEECVFPFVYRNRKHFDCTVHGSLFPWCSLDADYVGRWKYCAQRDYAKCVFPFIYGGKKY
ETCTKIGSMWMSWCSLSPNYDKDRAWKYC
DQDEGVSTEPTQDGPAELPEDEECVFPFVYRNRKHFDCTVHGSLFPWCSLDADYVGRWKYCAQRDYAKCVFPFIYGGKKY
ETCTKIGSMWMSWCSLSPNYDKDRAWKYC
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
BULL
sample
9913
BOS TAURUS
SPERM
1
2.43
49.1
MAD EXPERIMENT WAS UNDERTAKEN AT DESY-HAMBURG (X31). A NATIVE DATA SET WAS COLLECTED AT ELETTRA (BEAMLINE 5.2 R).
7.20
CRYSTALS WERE OBTAINED IN 30% ISOPROPANOL, 5% PEG 4000, 0.1 M HEPES, PH 7.2.
diffrn_source
repository
Initial release
Version format compliance
Version format compliance
Data collection
1
0
2002-04-12
1
1
2011-05-07
1
2
2011-07-13
1
3
2019-07-24
_diffrn_source.pdbx_synchrotron_site
PDBE
Y
PDBE
2001-02-14
REL
1
B
O
HOH
2017
5.87
1
B
O
HOH
2030
6.36
PC
PHOSPHOCHOLINE
HOH
water
THE SWS ENTRY INCLUDES A PEPTIDE SIGNAL OF 25 AA.
PC
1110
2
PC
PC
1110
A
PC
1111
2
PC
PC
1111
A
PC
1110
2
PC
PC
1110
B
PC
1111
2
PC
PC
1111
B
HOH
2001
3
HOH
HOH
2001
A
HOH
2002
3
HOH
HOH
2002
A
HOH
2003
3
HOH
HOH
2003
A
HOH
2004
3
HOH
HOH
2004
A
HOH
2005
3
HOH
HOH
2005
A
HOH
2006
3
HOH
HOH
2006
A
HOH
2007
3
HOH
HOH
2007
A
HOH
2008
3
HOH
HOH
2008
A
HOH
2009
3
HOH
HOH
2009
A
HOH
2010
3
HOH
HOH
2010
A
HOH
2011
3
HOH
HOH
2011
A
HOH
2012
3
HOH
HOH
2012
A
HOH
2013
3
HOH
HOH
2013
A
HOH
2014
3
HOH
HOH
2014
A
HOH
2015
3
HOH
HOH
2015
A
HOH
2016
3
HOH
HOH
2016
A
HOH
2017
3
HOH
HOH
2017
A
HOH
2018
3
HOH
HOH
2018
A
HOH
2019
3
HOH
HOH
2019
A
HOH
2020
3
HOH
HOH
2020
A
HOH
2021
3
HOH
HOH
2021
A
HOH
2022
3
HOH
HOH
2022
A
HOH
2023
3
HOH
HOH
2023
A
HOH
2024
3
HOH
HOH
2024
A
HOH
2025
3
HOH
HOH
2025
A
HOH
2026
3
HOH
HOH
2026
A
HOH
2027
3
HOH
HOH
2027
A
HOH
2028
3
HOH
HOH
2028
A
HOH
2029
3
HOH
HOH
2029
A
HOH
2030
3
HOH
HOH
2030
A
HOH
2031
3
HOH
HOH
2031
A
HOH
2032
3
HOH
HOH
2032
A
HOH
2033
3
HOH
HOH
2033
A
HOH
2034
3
HOH
HOH
2034
A
HOH
2035
3
HOH
HOH
2035
A
HOH
2036
3
HOH
HOH
2036
A
HOH
2037
3
HOH
HOH
2037
A
HOH
2038
3
HOH
HOH
2038
A
HOH
2039
3
HOH
HOH
2039
A
HOH
2040
3
HOH
HOH
2040
A
HOH
2041
3
HOH
HOH
2041
A
HOH
2042
3
HOH
HOH
2042
A
HOH
2043
3
HOH
HOH
2043
A
HOH
2044
3
HOH
HOH
2044
A
HOH
2045
3
HOH
HOH
2045
A
HOH
2046
3
HOH
HOH
2046
A
HOH
2047
3
HOH
HOH
2047
A
HOH
2048
3
HOH
HOH
2048
A
HOH
2049
3
HOH
HOH
2049
A
HOH
2050
3
HOH
HOH
2050
A
HOH
2051
3
HOH
HOH
2051
A
HOH
2052
3
HOH
HOH
2052
A
HOH
2053
3
HOH
HOH
2053
A
HOH
2054
3
HOH
HOH
2054
A
HOH
2055
3
HOH
HOH
2055
A
HOH
2056
3
HOH
HOH
2056
A
HOH
2057
3
HOH
HOH
2057
A
HOH
2058
3
HOH
HOH
2058
A
HOH
2059
3
HOH
HOH
2059
A
HOH
2060
3
HOH
HOH
2060
A
HOH
2061
3
HOH
HOH
2061
A
HOH
2062
3
HOH
HOH
2062
A
HOH
2063
3
HOH
HOH
2063
A
HOH
2064
3
HOH
HOH
2064
A
HOH
2065
3
HOH
HOH
2065
A
HOH
2066
3
HOH
HOH
2066
A
HOH
2067
3
HOH
HOH
2067
A
HOH
2068
3
HOH
HOH
2068
A
HOH
2069
3
HOH
HOH
2069
A
HOH
2070
3
HOH
HOH
2070
A
HOH
2071
3
HOH
HOH
2071
A
HOH
2072
3
HOH
HOH
2072
A
HOH
2073
3
HOH
HOH
2073
A
HOH
2074
3
HOH
HOH
2074
A
HOH
2075
3
HOH
HOH
2075
A
HOH
2076
3
HOH
HOH
2076
A
HOH
2077
3
HOH
HOH
2077
A
HOH
2078
3
HOH
HOH
2078
A
HOH
2079
3
HOH
HOH
2079
A
HOH
2080
3
HOH
HOH
2080
A
HOH
2081
3
HOH
HOH
2081
A
HOH
2082
3
HOH
HOH
2082
A
HOH
2083
3
HOH
HOH
2083
A
HOH
2084
3
HOH
HOH
2084
A
HOH
2085
3
HOH
HOH
2085
A
HOH
2086
3
HOH
HOH
2086
A
HOH
2087
3
HOH
HOH
2087
A
HOH
2088
3
HOH
HOH
2088
A
HOH
2089
3
HOH
HOH
2089
A
HOH
2090
3
HOH
HOH
2090
A
HOH
2091
3
HOH
HOH
2091
A
HOH
2092
3
HOH
HOH
2092
A
HOH
2093
3
HOH
HOH
2093
A
HOH
2094
3
HOH
HOH
2094
A
HOH
2095
3
HOH
HOH
2095
A
HOH
2096
3
HOH
HOH
2096
A
HOH
2097
3
HOH
HOH
2097
A
HOH
2098
3
HOH
HOH
2098
A
HOH
2099
3
HOH
HOH
2099
A
HOH
2100
3
HOH
HOH
2100
A
HOH
2001
3
HOH
HOH
2001
B
HOH
2002
3
HOH
HOH
2002
B
HOH
2003
3
HOH
HOH
2003
B
HOH
2004
3
HOH
HOH
2004
B
HOH
2005
3
HOH
HOH
2005
B
HOH
2006
3
HOH
HOH
2006
B
HOH
2007
3
HOH
HOH
2007
B
HOH
2008
3
HOH
HOH
2008
B
HOH
2009
3
HOH
HOH
2009
B
HOH
2010
3
HOH
HOH
2010
B
HOH
2011
3
HOH
HOH
2011
B
HOH
2012
3
HOH
HOH
2012
B
HOH
2013
3
HOH
HOH
2013
B
HOH
2014
3
HOH
HOH
2014
B
HOH
2015
3
HOH
HOH
2015
B
HOH
2016
3
HOH
HOH
2016
B
HOH
2017
3
HOH
HOH
2017
B
HOH
2018
3
HOH
HOH
2018
B
HOH
2019
3
HOH
HOH
2019
B
HOH
2020
3
HOH
HOH
2020
B
HOH
2021
3
HOH
HOH
2021
B
HOH
2022
3
HOH
HOH
2022
B
HOH
2023
3
HOH
HOH
2023
B
HOH
2024
3
HOH
HOH
2024
B
HOH
2025
3
HOH
HOH
2025
B
HOH
2026
3
HOH
HOH
2026
B
HOH
2027
3
HOH
HOH
2027
B
HOH
2028
3
HOH
HOH
2028
B
HOH
2029
3
HOH
HOH
2029
B
HOH
2030
3
HOH
HOH
2030
B
HOH
2031
3
HOH
HOH
2031
B
HOH
2032
3
HOH
HOH
2032
B
HOH
2033
3
HOH
HOH
2033
B
HOH
2034
3
HOH
HOH
2034
B
HOH
2035
3
HOH
HOH
2035
B
HOH
2036
3
HOH
HOH
2036
B
HOH
2037
3
HOH
HOH
2037
B
HOH
2038
3
HOH
HOH
2038
B
HOH
2039
3
HOH
HOH
2039
B
HOH
2040
3
HOH
HOH
2040
B
HOH
2041
3
HOH
HOH
2041
B
HOH
2042
3
HOH
HOH
2042
B
HOH
2043
3
HOH
HOH
2043
B
HOH
2044
3
HOH
HOH
2044
B
HOH
2045
3
HOH
HOH
2045
B
HOH
2046
3
HOH
HOH
2046
B
HOH
2047
3
HOH
HOH
2047
B
HOH
2048
3
HOH
HOH
2048
B
HOH
2049
3
HOH
HOH
2049
B
HOH
2050
3
HOH
HOH
2050
B
HOH
2051
3
HOH
HOH
2051
B
HOH
2052
3
HOH
HOH
2052
B
HOH
2053
3
HOH
HOH
2053
B
HOH
2054
3
HOH
HOH
2054
B
HOH
2055
3
HOH
HOH
2055
B
HOH
2056
3
HOH
HOH
2056
B
HOH
2057
3
HOH
HOH
2057
B
HOH
2058
3
HOH
HOH
2058
B
HOH
2059
3
HOH
HOH
2059
B
HOH
2060
3
HOH
HOH
2060
B
HOH
2061
3
HOH
HOH
2061
B
HOH
2062
3
HOH
HOH
2062
B
HOH
2063
3
HOH
HOH
2063
B
HOH
2064
3
HOH
HOH
2064
B
HOH
2065
3
HOH
HOH
2065
B
HOH
2066
3
HOH
HOH
2066
B
HOH
2067
3
HOH
HOH
2067
B
HOH
2068
3
HOH
HOH
2068
B
HOH
2069
3
HOH
HOH
2069
B
HOH
2070
3
HOH
HOH
2070
B
HOH
2071
3
HOH
HOH
2071
B
HOH
2072
3
HOH
HOH
2072
B
HOH
2073
3
HOH
HOH
2073
B
HOH
2074
3
HOH
HOH
2074
B
HOH
2075
3
HOH
HOH
2075
B
HOH
2076
3
HOH
HOH
2076
B
HOH
2077
3
HOH
HOH
2077
B
HOH
2078
3
HOH
HOH
2078
B
HOH
2079
3
HOH
HOH
2079
B
HOH
2080
3
HOH
HOH
2080
B
HOH
2081
3
HOH
HOH
2081
B
HOH
2082
3
HOH
HOH
2082
B
HOH
2083
3
HOH
HOH
2083
B
HOH
2084
3
HOH
HOH
2084
B
HOH
2085
3
HOH
HOH
2085
B
HOH
2086
3
HOH
HOH
2086
B
HOH
2087
3
HOH
HOH
2087
B
HOH
2088
3
HOH
HOH
2088
B
HOH
2089
3
HOH
HOH
2089
B
HOH
2090
3
HOH
HOH
2090
B
HOH
2091
3
HOH
HOH
2091
B
HOH
2092
3
HOH
HOH
2092
B
HOH
2093
3
HOH
HOH
2093
B
HOH
2094
3
HOH
HOH
2094
B
HOH
2095
3
HOH
HOH
2095
B
HOH
2096
3
HOH
HOH
2096
B
HOH
2097
3
HOH
HOH
2097
B
HOH
2098
3
HOH
HOH
2098
B
HOH
2099
3
HOH
HOH
2099
B
HOH
2100
3
HOH
HOH
2100
B
HOH
2101
3
HOH
HOH
2101
B
HOH
2102
3
HOH
HOH
2102
B
HOH
2103
3
HOH
HOH
2103
B
HOH
2104
3
HOH
HOH
2104
B
HOH
2105
3
HOH
HOH
2105
B
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
n
11
11
A
n
12
12
A
n
13
13
A
n
14
14
A
n
15
15
A
n
16
16
A
n
17
17
A
n
18
18
A
n
19
19
A
n
20
20
A
n
21
21
A
GLU
22
n
22
GLU
22
A
GLU
23
n
23
GLU
23
A
CYS
24
n
24
CYS
24
A
VAL
25
n
25
VAL
25
A
PHE
26
n
26
PHE
26
A
PRO
27
n
27
PRO
27
A
PHE
28
n
28
PHE
28
A
VAL
29
n
29
VAL
29
A
TYR
30
n
30
TYR
30
A
ARG
31
n
31
ARG
31
A
ASN
32
n
32
ASN
32
A
ARG
33
n
33
ARG
33
A
LYS
34
n
34
LYS
34
A
HIS
35
n
35
HIS
35
A
PHE
36
n
36
PHE
36
A
ASP
37
n
37
ASP
37
A
CYS
38
n
38
CYS
38
A
THR
39
n
39
THR
39
A
VAL
40
n
40
VAL
40
A
HIS
41
n
41
HIS
41
A
GLY
42
n
42
GLY
42
A
SER
43
n
43
SER
43
A
LEU
44
n
44
LEU
44
A
PHE
45
n
45
PHE
45
A
PRO
46
n
46
PRO
46
A
TRP
47
n
47
TRP
47
A
CYS
48
n
48
CYS
48
A
SER
49
n
49
SER
49
A
LEU
50
n
50
LEU
50
A
ASP
51
n
51
ASP
51
A
ALA
52
n
52
ALA
52
A
ASP
53
n
53
ASP
53
A
TYR
54
n
54
TYR
54
A
VAL
55
n
55
VAL
55
A
GLY
56
n
56
GLY
56
A
ARG
57
n
57
ARG
57
A
TRP
58
n
58
TRP
58
A
LYS
59
n
59
LYS
59
A
TYR
60
n
60
TYR
60
A
CYS
61
n
61
CYS
61
A
ALA
62
n
62
ALA
62
A
GLN
63
n
63
GLN
63
A
ARG
64
n
64
ARG
64
A
ASP
65
n
65
ASP
65
A
TYR
66
n
66
TYR
66
A
ALA
67
n
67
ALA
67
A
LYS
68
n
68
LYS
68
A
CYS
69
n
69
CYS
69
A
VAL
70
n
70
VAL
70
A
PHE
71
n
71
PHE
71
A
PRO
72
n
72
PRO
72
A
PHE
73
n
73
PHE
73
A
ILE
74
n
74
ILE
74
A
TYR
75
n
75
TYR
75
A
GLY
76
n
76
GLY
76
A
GLY
77
n
77
GLY
77
A
LYS
78
n
78
LYS
78
A
LYS
79
n
79
LYS
79
A
TYR
80
n
80
TYR
80
A
GLU
81
n
81
GLU
81
A
THR
82
n
82
THR
82
A
CYS
83
n
83
CYS
83
A
THR
84
n
84
THR
84
A
LYS
85
n
85
LYS
85
A
ILE
86
n
86
ILE
86
A
GLY
87
n
87
GLY
87
A
SER
88
n
88
SER
88
A
MET
89
n
89
MET
89
A
TRP
90
n
90
TRP
90
A
MET
91
n
91
MET
91
A
SER
92
n
92
SER
92
A
TRP
93
n
93
TRP
93
A
CYS
94
n
94
CYS
94
A
SER
95
n
95
SER
95
A
LEU
96
n
96
LEU
96
A
SER
97
n
97
SER
97
A
PRO
98
n
98
PRO
98
A
ASN
99
n
99
ASN
99
A
TYR
100
n
100
TYR
100
A
ASP
101
n
101
ASP
101
A
LYS
102
n
102
LYS
102
A
ASP
103
n
103
ASP
103
A
ARG
104
n
104
ARG
104
A
ALA
105
n
105
ALA
105
A
TRP
106
n
106
TRP
106
A
LYS
107
n
107
LYS
107
A
TYR
108
n
108
TYR
108
A
CYS
109
n
109
CYS
109
A
n
1
1
B
n
2
2
B
n
3
3
B
n
4
4
B
n
5
5
B
n
6
6
B
n
7
7
B
n
8
8
B
n
9
9
B
n
10
10
B
n
11
11
B
n
12
12
B
n
13
13
B
n
14
14
B
n
15
15
B
n
16
16
B
n
17
17
B
n
18
18
B
n
19
19
B
n
20
20
B
n
21
21
B
GLU
22
n
22
GLU
22
B
GLU
23
n
23
GLU
23
B
CYS
24
n
24
CYS
24
B
VAL
25
n
25
VAL
25
B
PHE
26
n
26
PHE
26
B
PRO
27
n
27
PRO
27
B
PHE
28
n
28
PHE
28
B
VAL
29
n
29
VAL
29
B
TYR
30
n
30
TYR
30
B
ARG
31
n
31
ARG
31
B
ASN
32
n
32
ASN
32
B
ARG
33
n
33
ARG
33
B
LYS
34
n
34
LYS
34
B
HIS
35
n
35
HIS
35
B
PHE
36
n
36
PHE
36
B
ASP
37
n
37
ASP
37
B
CYS
38
n
38
CYS
38
B
THR
39
n
39
THR
39
B
VAL
40
n
40
VAL
40
B
HIS
41
n
41
HIS
41
B
GLY
42
n
42
GLY
42
B
SER
43
n
43
SER
43
B
LEU
44
n
44
LEU
44
B
PHE
45
n
45
PHE
45
B
PRO
46
n
46
PRO
46
B
TRP
47
n
47
TRP
47
B
CYS
48
n
48
CYS
48
B
SER
49
n
49
SER
49
B
LEU
50
n
50
LEU
50
B
ASP
51
n
51
ASP
51
B
ALA
52
n
52
ALA
52
B
ASP
53
n
53
ASP
53
B
TYR
54
n
54
TYR
54
B
VAL
55
n
55
VAL
55
B
GLY
56
n
56
GLY
56
B
ARG
57
n
57
ARG
57
B
TRP
58
n
58
TRP
58
B
LYS
59
n
59
LYS
59
B
TYR
60
n
60
TYR
60
B
CYS
61
n
61
CYS
61
B
ALA
62
n
62
ALA
62
B
GLN
63
n
63
GLN
63
B
ARG
64
n
64
ARG
64
B
ASP
65
n
65
ASP
65
B
TYR
66
n
66
TYR
66
B
ALA
67
n
67
ALA
67
B
LYS
68
n
68
LYS
68
B
CYS
69
n
69
CYS
69
B
VAL
70
n
70
VAL
70
B
PHE
71
n
71
PHE
71
B
PRO
72
n
72
PRO
72
B
PHE
73
n
73
PHE
73
B
ILE
74
n
74
ILE
74
B
TYR
75
n
75
TYR
75
B
GLY
76
n
76
GLY
76
B
GLY
77
n
77
GLY
77
B
LYS
78
n
78
LYS
78
B
LYS
79
n
79
LYS
79
B
TYR
80
n
80
TYR
80
B
GLU
81
n
81
GLU
81
B
THR
82
n
82
THR
82
B
CYS
83
n
83
CYS
83
B
THR
84
n
84
THR
84
B
LYS
85
n
85
LYS
85
B
ILE
86
n
86
ILE
86
B
GLY
87
n
87
GLY
87
B
SER
88
n
88
SER
88
B
MET
89
n
89
MET
89
B
TRP
90
n
90
TRP
90
B
MET
91
n
91
MET
91
B
SER
92
n
92
SER
92
B
TRP
93
n
93
TRP
93
B
CYS
94
n
94
CYS
94
B
SER
95
n
95
SER
95
B
LEU
96
n
96
LEU
96
B
SER
97
n
97
SER
97
B
PRO
98
n
98
PRO
98
B
ASN
99
n
99
ASN
99
B
TYR
100
n
100
TYR
100
B
ASP
101
n
101
ASP
101
B
LYS
102
n
102
LYS
102
B
ASP
103
n
103
ASP
103
B
ARG
104
n
104
ARG
104
B
ALA
105
n
105
ALA
105
B
TRP
106
n
106
TRP
106
B
LYS
107
n
107
LYS
107
B
TYR
108
n
108
TYR
108
B
CYS
109
n
109
CYS
109
B
author_and_software_defined_assembly
PQS
4
tetrameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
30
A
N
TYR
30
A
O
ARG
33
A
O
ARG
33
A
N
CYS
48
A
N
CYS
48
A
O
LYS
59
A
O
LYS
59
A
N
TYR
75
A
N
TYR
75
A
O
LYS
78
A
O
LYS
78
A
N
CYS
94
A
N
CYS
94
A
O
LYS
107
A
O
LYS
107
B
N
TYR
30
B
N
TYR
30
B
O
ARG
33
B
O
ARG
33
B
N
CYS
48
B
N
CYS
48
B
O
LYS
59
B
O
LYS
59
B
N
TYR
75
B
N
TYR
75
B
O
LYS
78
B
O
LYS
78
B
N
CYS
94
B
N
CYS
94
B
O
LYS
107
B
O
LYS
107
1
A
ASP
1
A
ASP
1
1
Y
1
A
GLN
2
A
GLN
2
1
Y
1
A
ASP
3
A
ASP
3
1
Y
1
A
GLU
4
A
GLU
4
1
Y
1
A
GLY
5
A
GLY
5
1
Y
1
A
VAL
6
A
VAL
6
1
Y
1
A
SER
7
A
SER
7
1
Y
1
A
THR
8
A
THR
8
1
Y
1
A
GLU
9
A
GLU
9
1
Y
1
A
PRO
10
A
PRO
10
1
Y
1
A
THR
11
A
THR
11
1
Y
1
A
GLN
12
A
GLN
12
1
Y
1
A
ASP
13
A
ASP
13
1
Y
1
A
GLY
14
A
GLY
14
1
Y
1
A
PRO
15
A
PRO
15
1
Y
1
A
ALA
16
A
ALA
16
1
Y
1
A
GLU
17
A
GLU
17
1
Y
1
A
LEU
18
A
LEU
18
1
Y
1
A
PRO
19
A
PRO
19
1
Y
1
A
GLU
20
A
GLU
20
1
Y
1
A
ASP
21
A
ASP
21
1
Y
1
B
ASP
1
B
ASP
1
1
Y
1
B
GLN
2
B
GLN
2
1
Y
1
B
ASP
3
B
ASP
3
1
Y
1
B
GLU
4
B
GLU
4
1
Y
1
B
GLY
5
B
GLY
5
1
Y
1
B
VAL
6
B
VAL
6
1
Y
1
B
SER
7
B
SER
7
1
Y
1
B
THR
8
B
THR
8
1
Y
1
B
GLU
9
B
GLU
9
1
Y
1
B
PRO
10
B
PRO
10
1
Y
1
B
THR
11
B
THR
11
1
Y
1
B
GLN
12
B
GLN
12
1
Y
1
B
ASP
13
B
ASP
13
1
Y
1
B
GLY
14
B
GLY
14
1
Y
1
B
PRO
15
B
PRO
15
1
Y
1
B
ALA
16
B
ALA
16
1
Y
1
B
GLU
17
B
GLU
17
1
Y
1
B
LEU
18
B
LEU
18
1
Y
1
B
PRO
19
B
PRO
19
1
Y
1
B
GLU
20
B
GLU
20
1
Y
1
B
ASP
21
B
ASP
21
1
Y
1
A
TRP
90
-132.26
-43.39
1
B
SER
88
-130.59
-54.09
1
B
TRP
90
-152.15
-52.88
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
PCH_PAR.TXT
PCH_TOP.TXT
21.3
2.64
0.54
0.00
2.64
0.00
-5.28
THE FIRST 21 RESIDUES (ASP 1-ASP 21) WERE NOT VISIBLE IN THE ELECTRON DENSITY MAPS AT 1.82 A RESOLUTION.
0.230
0.006
0.207
0.207
1.82
16.32
1537
22379
6.9
99.0
RANDOM
1454528.39
1
RESTRAINED
THROUGHOUT
0.0
MAD
FLAT MODEL
60.4559
0.503596
0.23
0.20
5.00
0.04
0.03
1.82
16.32
205
1737
44
0
1488
0.005
1.2
25.1
0.69
1.31
1.50
2.07
2.00
1.94
2.00
2.93
2.50
0.211
0.016
0.202
1.91
173
2859
6
5.7
79.4
10.8
1.820
30.000
1H8P
275885
0.04500
1
11.7000
5.300
99.0
0.12600
1.82
1.92
5.300
1
4.50
96.3
refinement
CNS
1.0
data reduction
MOSFLM
data scaling
SCALA
phasing
CNS
SEMINAL PLASMA PROTEIN PDC-109
Bull seminal plasma PDC-109 fibronectin type II module
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
THE PROTEIN IS ACTIVE AS HOMODIMER.
A
ALA
62
A
ALA
62
HELX_P
A
TYR
66
A
TYR
66
5
1
5
A
ASN
99
A
ASN
99
HELX_P
A
ARG
104
A
ARG
104
1
2
6
B
ALA
62
B
ALA
62
HELX_P
B
TYR
66
B
TYR
66
5
3
5
B
ASN
99
B
ASN
99
HELX_P
B
ARG
104
B
ARG
104
1
4
6
disulf
2.024
A
CYS
24
A
SG
CYS
24
1_555
A
CYS
48
A
SG
CYS
48
1_555
disulf
2.029
A
CYS
38
A
SG
CYS
38
1_555
A
CYS
61
A
SG
CYS
61
1_555
disulf
2.025
A
CYS
69
A
SG
CYS
69
1_555
A
CYS
94
A
SG
CYS
94
1_555
disulf
2.025
A
CYS
83
A
SG
CYS
83
1_555
A
CYS
109
A
SG
CYS
109
1_555
disulf
2.027
B
CYS
24
B
SG
CYS
24
1_555
B
CYS
48
B
SG
CYS
48
1_555
disulf
2.030
B
CYS
38
B
SG
CYS
38
1_555
B
CYS
61
B
SG
CYS
61
1_555
disulf
2.033
B
CYS
69
B
SG
CYS
69
1_555
B
CYS
94
B
SG
CYS
94
1_555
disulf
2.027
B
CYS
83
B
SG
CYS
83
1_555
B
CYS
109
B
SG
CYS
109
1_555
PHOSPHORYLCHOLINE-BINDING PROTEIN
PHOSPHORYLCHOLINE-BINDING PROTEIN
A
PHE
26
A
PHE
26
1
A
PRO
27
A
PRO
27
-0.25
A
PHE
71
A
PHE
71
1
A
PRO
72
A
PRO
72
-0.18
B
PHE
26
B
PHE
26
1
B
PRO
27
B
PRO
27
-0.22
B
PHE
71
B
PHE
71
1
B
PRO
72
B
PRO
72
0.05
given
0.934640
-0.354690
-0.025290
0.355520
0.933540
0.045990
0.007300
-0.051980
0.998620
44.11178
-15.60781
9.35187
SFP1_BOVIN
UNP
1
P02784
26
134
1H8P
1
109
P02784
A
1
1
109
26
134
1H8P
1
109
P02784
B
1
1
109
2
2
2
2
2
2
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
PHE
28
A
PHE
28
A
TYR
30
A
TYR
30
A
ARG
33
A
ARG
33
A
HIS
35
A
HIS
35
A
TRP
47
A
TRP
47
A
SER
49
A
SER
49
A
TRP
58
A
TRP
58
A
TYR
60
A
TYR
60
A
PHE
73
A
PHE
73
A
TYR
75
A
TYR
75
A
LYS
78
A
LYS
78
A
TYR
80
A
TYR
80
A
TRP
93
A
TRP
93
A
SER
95
A
SER
95
A
TRP
106
A
TRP
106
A
TYR
108
A
TYR
108
B
PHE
28
B
PHE
28
B
TYR
30
B
TYR
30
B
ARG
33
B
ARG
33
B
HIS
35
B
HIS
35
B
TRP
47
B
TRP
47
B
SER
49
B
SER
49
B
TRP
58
B
TRP
58
B
TYR
60
B
TYR
60
B
PHE
73
B
PHE
73
B
TYR
75
B
TYR
75
B
LYS
78
B
LYS
78
B
TYR
80
B
TYR
80
B
TRP
93
B
TRP
93
B
SER
95
B
SER
95
B
TRP
106
B
TRP
106
B
TYR
108
B
TYR
108
BINDING SITE FOR RESIDUE PC A1110
Software
8
BINDING SITE FOR RESIDUE PC A1111
Software
7
BINDING SITE FOR RESIDUE PC B1110
Software
5
BINDING SITE FOR RESIDUE PC B1111
Software
7
A
GLY
87
A
GLY
87
8
1_555
A
SER
88
A
SER
88
8
1_555
A
MET
89
A
MET
89
8
1_555
A
TRP
93
A
TRP
93
8
1_555
A
TYR
100
A
TYR
100
8
1_555
A
TRP
106
A
TRP
106
8
1_555
A
TYR
108
A
TYR
108
8
1_555
A
HOH
2099
G
HOH
8
1_555
A
TYR
30
A
TYR
30
7
1_555
A
ARG
31
A
ARG
31
7
1_555
A
HIS
41
A
HIS
41
7
1_555
A
GLY
42
A
GLY
42
7
1_555
A
TYR
54
A
TYR
54
7
1_555
A
TRP
58
A
TRP
58
7
1_555
A
HOH
2100
G
HOH
7
1_555
B
TYR
30
B
TYR
30
5
1_555
B
GLY
42
B
GLY
42
5
1_555
B
TRP
47
B
TRP
47
5
1_555
B
TYR
54
B
TYR
54
5
1_555
B
LYS
78
B
LYS
78
5
1_555
B
ARG
33
B
ARG
33
7
1_555
B
TYR
75
B
TYR
75
7
1_555
B
GLY
87
B
GLY
87
7
1_555
B
TRP
93
B
TRP
93
7
1_555
B
TYR
100
B
TYR
100
7
1_555
B
TRP
106
B
TRP
106
7
1_555
B
HOH
2105
H
HOH
7
1_555
150
P 3 2 1