0.013454
0.000000
0.005766
0.000000
0.017395
0.000000
0.000000
0.000000
0.017847
0.00000
0.00000
0.00000
Swaminathan, G.J.
Weaver, A.J.
Loegering, D.A.
Checkel, J.L.
Leonidas, D.D.
Gleich, G.J.
Acharya, K.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
113.20
90.00
74.328
57.487
60.961
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
N
C
N
110
N
C
N
111
N
O
N
112
N
O
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
C
N
119
N
O
N
120
N
C
N
121
N
O
N
122
N
C
N
123
N
O
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
N
N
133
S
C
N
134
N
C
N
135
N
O
N
136
N
C
Y
137
N
C
Y
138
N
N
Y
139
N
C
Y
140
N
C
Y
141
N
N
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
O
N
154
N
H
N
155
N
H
N
156
N
N
N
157
S
C
N
158
N
C
N
159
N
O
N
160
S
C
N
161
N
C
N
162
N
C
N
163
N
C
N
164
N
O
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
N
N
179
S
C
N
180
N
C
N
181
N
O
N
182
N
C
N
183
N
C
N
184
N
C
N
185
N
C
N
186
N
O
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
N
N
201
S
C
N
202
N
C
N
203
N
O
N
204
N
C
Y
205
N
C
Y
206
N
C
Y
207
N
C
Y
208
N
C
Y
209
N
C
Y
210
N
C
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
N
N
224
S
C
N
225
N
C
N
226
N
O
N
227
N
C
N
228
N
C
N
229
N
C
N
230
N
O
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
N
N
241
S
C
N
242
N
C
N
243
N
O
N
244
N
C
N
245
N
O
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
S
N
255
N
O
N
256
N
O
N
257
N
O
N
258
N
O
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
R
C
N
264
N
O
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
Y
281
N
C
Y
282
N
C
Y
283
N
C
Y
284
N
N
Y
285
N
C
Y
286
N
C
Y
287
N
C
Y
288
N
C
Y
289
N
C
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
N
N
304
S
C
N
305
N
C
N
306
N
O
N
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
N
314
N
O
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
Y
135
N
sing
Y
136
N
doub
Y
137
N
doub
N
138
N
sing
Y
139
N
sing
N
140
N
sing
Y
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
doub
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
Y
200
N
doub
Y
201
N
sing
Y
202
N
sing
N
203
N
sing
Y
204
N
doub
N
205
N
sing
Y
206
N
doub
N
207
N
sing
Y
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
doub
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
doub
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
Y
273
N
doub
Y
274
N
sing
Y
275
N
sing
N
276
N
sing
Y
277
N
doub
Y
278
N
sing
Y
279
N
sing
N
280
N
sing
Y
281
N
sing
Y
282
N
doub
N
283
N
sing
Y
284
N
doub
N
285
N
sing
Y
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
Y
301
N
doub
Y
302
N
sing
Y
303
N
sing
N
304
N
sing
Y
305
N
doub
N
306
N
sing
Y
307
N
doub
N
308
N
sing
Y
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
276
26197
10.1074/JBC.M100848200
11319227
Crystal Structure of the Eosinophil Major Basic Protein at 1.8A. An Atypical Lectin with a Paradigm Shift in Specificity
2001
10.2210/pdb1h8u/pdb
pdb_00001h8u
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
MIRRORS
CCD
2000-05-15
ADSC CCD
SINGLE WAVELENGTH
M
x-ray
1
1.244
1.0
PX14.1
SRS
1.244
SYNCHROTRON
SRS BEAMLINE PX14.1
13820.900
EOSINOPHIL GRANULE MAJOR BASIC PROTEIN 1
2
nat
polymer
96.063
SULFATE ION
8
syn
non-polymer
92.094
GLYCEROL
2
syn
non-polymer
18.015
water
158
nat
water
MBP
no
no
TCRYLLVRSLQTFSQAWFTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWVDGSRWNFAYW
AAHQPWSRGGHCVALCTRGGYWRRAHCLRRLPFICSY
TCRYLLVRSLQTFSQAWFTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWVDGSRWNFAYW
AAHQPWSRGGHCVALCTRGGYWRRAHCLRRLPFICSY
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
EOSINOPHIL
SECRETORY GRANULES
9606
PRIMARY GRANULE
HOMO SAPIENS
BLOOD
1
2.32
45
6.00
100MM MALONIC ACID PH6, 140MM POTTASIUM DIHYDROGEN PHOSPHATE., pH 6.00
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Refinement description
1
0
2001-07-17
1
1
2011-05-07
1
2
2011-07-13
1
3
2023-12-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
PDBE
Y
PDBE
2001-02-15
REL
SO4
SULFATE ION
GOL
GLYCEROL
HOH
water
INVOLVED IN ANTIPARASITIC DEFENSE MECHANISMS AND IMMUNE
HYPERSENSITIVITY REACTIONS. INDUCES NONCYTOLYTIC HISTAMINE
RELEASE FROM HUMAN BASOPHILS.
1LIT
PDB ENTRY 1LIT
PDB
experimental model
SO4
1118
2
SO4
SO4
1118
A
SO4
1119
2
SO4
SO4
1119
A
SO4
1120
2
SO4
SO4
1120
A
SO4
1121
2
SO4
SO4
1121
A
SO4
1122
2
SO4
SO4
1122
A
GOL
1123
3
GOL
GOL
1123
A
GOL
1124
3
GOL
GOL
1124
A
SO4
1118
2
SO4
SO4
1118
B
SO4
1119
2
SO4
SO4
1119
B
SO4
1120
2
SO4
SO4
1120
B
HOH
2001
4
HOH
HOH
2001
A
HOH
2002
4
HOH
HOH
2002
A
HOH
2003
4
HOH
HOH
2003
A
HOH
2004
4
HOH
HOH
2004
A
HOH
2005
4
HOH
HOH
2005
A
HOH
2006
4
HOH
HOH
2006
A
HOH
2007
4
HOH
HOH
2007
A
HOH
2008
4
HOH
HOH
2008
A
HOH
2009
4
HOH
HOH
2009
A
HOH
2010
4
HOH
HOH
2010
A
HOH
2011
4
HOH
HOH
2011
A
HOH
2012
4
HOH
HOH
2012
A
HOH
2013
4
HOH
HOH
2013
A
HOH
2014
4
HOH
HOH
2014
A
HOH
2015
4
HOH
HOH
2015
A
HOH
2016
4
HOH
HOH
2016
A
HOH
2017
4
HOH
HOH
2017
A
HOH
2018
4
HOH
HOH
2018
A
HOH
2019
4
HOH
HOH
2019
A
HOH
2020
4
HOH
HOH
2020
A
HOH
2021
4
HOH
HOH
2021
A
HOH
2022
4
HOH
HOH
2022
A
HOH
2023
4
HOH
HOH
2023
A
HOH
2024
4
HOH
HOH
2024
A
HOH
2025
4
HOH
HOH
2025
A
HOH
2026
4
HOH
HOH
2026
A
HOH
2027
4
HOH
HOH
2027
A
HOH
2028
4
HOH
HOH
2028
A
HOH
2029
4
HOH
HOH
2029
A
HOH
2030
4
HOH
HOH
2030
A
HOH
2031
4
HOH
HOH
2031
A
HOH
2032
4
HOH
HOH
2032
A
HOH
2033
4
HOH
HOH
2033
A
HOH
2034
4
HOH
HOH
2034
A
HOH
2035
4
HOH
HOH
2035
A
HOH
2036
4
HOH
HOH
2036
A
HOH
2037
4
HOH
HOH
2037
A
HOH
2038
4
HOH
HOH
2038
A
HOH
2039
4
HOH
HOH
2039
A
HOH
2040
4
HOH
HOH
2040
A
HOH
2041
4
HOH
HOH
2041
A
HOH
2042
4
HOH
HOH
2042
A
HOH
2043
4
HOH
HOH
2043
A
HOH
2044
4
HOH
HOH
2044
A
HOH
2045
4
HOH
HOH
2045
A
HOH
2046
4
HOH
HOH
2046
A
HOH
2047
4
HOH
HOH
2047
A
HOH
2048
4
HOH
HOH
2048
A
HOH
2049
4
HOH
HOH
2049
A
HOH
2050
4
HOH
HOH
2050
A
HOH
2051
4
HOH
HOH
2051
A
HOH
2052
4
HOH
HOH
2052
A
HOH
2053
4
HOH
HOH
2053
A
HOH
2054
4
HOH
HOH
2054
A
HOH
2055
4
HOH
HOH
2055
A
HOH
2056
4
HOH
HOH
2056
A
HOH
2057
4
HOH
HOH
2057
A
HOH
2058
4
HOH
HOH
2058
A
HOH
2059
4
HOH
HOH
2059
A
HOH
2060
4
HOH
HOH
2060
A
HOH
2061
4
HOH
HOH
2061
A
HOH
2062
4
HOH
HOH
2062
A
HOH
2063
4
HOH
HOH
2063
A
HOH
2064
4
HOH
HOH
2064
A
HOH
2065
4
HOH
HOH
2065
A
HOH
2066
4
HOH
HOH
2066
A
HOH
2067
4
HOH
HOH
2067
A
HOH
2068
4
HOH
HOH
2068
A
HOH
2069
4
HOH
HOH
2069
A
HOH
2070
4
HOH
HOH
2070
A
HOH
2071
4
HOH
HOH
2071
A
HOH
2072
4
HOH
HOH
2072
A
HOH
2073
4
HOH
HOH
2073
A
HOH
2074
4
HOH
HOH
2074
A
HOH
2075
4
HOH
HOH
2075
A
HOH
2076
4
HOH
HOH
2076
A
HOH
2077
4
HOH
HOH
2077
A
HOH
2078
4
HOH
HOH
2078
A
HOH
2079
4
HOH
HOH
2079
A
HOH
2080
4
HOH
HOH
2080
A
HOH
2081
4
HOH
HOH
2081
A
HOH
2082
4
HOH
HOH
2082
A
HOH
2083
4
HOH
HOH
2083
A
HOH
2084
4
HOH
HOH
2084
A
HOH
2085
4
HOH
HOH
2085
A
HOH
2086
4
HOH
HOH
2086
A
HOH
2087
4
HOH
HOH
2087
A
HOH
2001
4
HOH
HOH
2001
B
HOH
2002
4
HOH
HOH
2002
B
HOH
2003
4
HOH
HOH
2003
B
HOH
2004
4
HOH
HOH
2004
B
HOH
2005
4
HOH
HOH
2005
B
HOH
2006
4
HOH
HOH
2006
B
HOH
2007
4
HOH
HOH
2007
B
HOH
2008
4
HOH
HOH
2008
B
HOH
2009
4
HOH
HOH
2009
B
HOH
2010
4
HOH
HOH
2010
B
HOH
2011
4
HOH
HOH
2011
B
HOH
2012
4
HOH
HOH
2012
B
HOH
2013
4
HOH
HOH
2013
B
HOH
2014
4
HOH
HOH
2014
B
HOH
2015
4
HOH
HOH
2015
B
HOH
2016
4
HOH
HOH
2016
B
HOH
2017
4
HOH
HOH
2017
B
HOH
2018
4
HOH
HOH
2018
B
HOH
2019
4
HOH
HOH
2019
B
HOH
2020
4
HOH
HOH
2020
B
HOH
2021
4
HOH
HOH
2021
B
HOH
2022
4
HOH
HOH
2022
B
HOH
2023
4
HOH
HOH
2023
B
HOH
2024
4
HOH
HOH
2024
B
HOH
2025
4
HOH
HOH
2025
B
HOH
2026
4
HOH
HOH
2026
B
HOH
2027
4
HOH
HOH
2027
B
HOH
2028
4
HOH
HOH
2028
B
HOH
2029
4
HOH
HOH
2029
B
HOH
2030
4
HOH
HOH
2030
B
HOH
2031
4
HOH
HOH
2031
B
HOH
2032
4
HOH
HOH
2032
B
HOH
2033
4
HOH
HOH
2033
B
HOH
2034
4
HOH
HOH
2034
B
HOH
2035
4
HOH
HOH
2035
B
HOH
2036
4
HOH
HOH
2036
B
HOH
2037
4
HOH
HOH
2037
B
HOH
2038
4
HOH
HOH
2038
B
HOH
2039
4
HOH
HOH
2039
B
HOH
2040
4
HOH
HOH
2040
B
HOH
2041
4
HOH
HOH
2041
B
HOH
2042
4
HOH
HOH
2042
B
HOH
2043
4
HOH
HOH
2043
B
HOH
2044
4
HOH
HOH
2044
B
HOH
2045
4
HOH
HOH
2045
B
HOH
2046
4
HOH
HOH
2046
B
HOH
2047
4
HOH
HOH
2047
B
HOH
2048
4
HOH
HOH
2048
B
HOH
2049
4
HOH
HOH
2049
B
HOH
2050
4
HOH
HOH
2050
B
HOH
2051
4
HOH
HOH
2051
B
HOH
2052
4
HOH
HOH
2052
B
HOH
2053
4
HOH
HOH
2053
B
HOH
2054
4
HOH
HOH
2054
B
HOH
2055
4
HOH
HOH
2055
B
HOH
2056
4
HOH
HOH
2056
B
HOH
2057
4
HOH
HOH
2057
B
HOH
2058
4
HOH
HOH
2058
B
HOH
2059
4
HOH
HOH
2059
B
HOH
2060
4
HOH
HOH
2060
B
HOH
2061
4
HOH
HOH
2061
B
HOH
2062
4
HOH
HOH
2062
B
HOH
2063
4
HOH
HOH
2063
B
HOH
2064
4
HOH
HOH
2064
B
HOH
2065
4
HOH
HOH
2065
B
HOH
2066
4
HOH
HOH
2066
B
HOH
2067
4
HOH
HOH
2067
B
HOH
2068
4
HOH
HOH
2068
B
HOH
2069
4
HOH
HOH
2069
B
HOH
2070
4
HOH
HOH
2070
B
HOH
2071
4
HOH
HOH
2071
B
n
1
1
A
n
2
2
A
ARG
3
n
3
ARG
3
A
TYR
4
n
4
TYR
4
A
LEU
5
n
5
LEU
5
A
LEU
6
n
6
LEU
6
A
VAL
7
n
7
VAL
7
A
ARG
8
n
8
ARG
8
A
SER
9
n
9
SER
9
A
LEU
10
n
10
LEU
10
A
GLN
11
n
11
GLN
11
A
THR
12
n
12
THR
12
A
PHE
13
n
13
PHE
13
A
SER
14
n
14
SER
14
A
GLN
15
n
15
GLN
15
A
ALA
16
n
16
ALA
16
A
TRP
17
n
17
TRP
17
A
PHE
18
n
18
PHE
18
A
THR
19
n
19
THR
19
A
CYS
20
n
20
CYS
20
A
ARG
21
n
21
ARG
21
A
ARG
22
n
22
ARG
22
A
CYS
23
n
23
CYS
23
A
TYR
24
n
24
TYR
24
A
ARG
25
n
25
ARG
25
A
GLY
26
n
26
GLY
26
A
ASN
27
n
27
ASN
27
A
LEU
28
n
28
LEU
28
A
VAL
29
n
29
VAL
29
A
SER
30
n
30
SER
30
A
ILE
31
n
31
ILE
31
A
HIS
32
n
32
HIS
32
A
ASN
33
n
33
ASN
33
A
PHE
34
n
34
PHE
34
A
ASN
35
n
35
ASN
35
A
ILE
36
n
36
ILE
36
A
ASN
37
n
37
ASN
37
A
TYR
38
n
38
TYR
38
A
ARG
39
n
39
ARG
39
A
ILE
40
n
40
ILE
40
A
GLN
41
n
41
GLN
41
A
CYS
42
n
42
CYS
42
A
SER
43
n
43
SER
43
A
VAL
44
n
44
VAL
44
A
SER
45
n
45
SER
45
A
ALA
46
n
46
ALA
46
A
LEU
47
n
47
LEU
47
A
ASN
48
n
48
ASN
48
A
GLN
49
n
49
GLN
49
A
GLY
50
n
50
GLY
50
A
GLN
51
n
51
GLN
51
A
VAL
52
n
52
VAL
52
A
TRP
53
n
53
TRP
53
A
ILE
54
n
54
ILE
54
A
GLY
55
n
55
GLY
55
A
GLY
56
n
56
GLY
56
A
ARG
57
n
57
ARG
57
A
ILE
58
n
58
ILE
58
A
THR
59
n
59
THR
59
A
GLY
60
n
60
GLY
60
A
SER
61
n
61
SER
61
A
GLY
62
n
62
GLY
62
A
ARG
63
n
63
ARG
63
A
CYS
64
n
64
CYS
64
A
ARG
65
n
65
ARG
65
A
ARG
66
n
66
ARG
66
A
PHE
67
n
67
PHE
67
A
GLN
68
n
68
GLN
68
A
TRP
69
n
69
TRP
69
A
VAL
70
n
70
VAL
70
A
ASP
71
n
71
ASP
71
A
GLY
72
n
72
GLY
72
A
SER
73
n
73
SER
73
A
ARG
74
n
74
ARG
74
A
TRP
75
n
75
TRP
75
A
ASN
76
n
76
ASN
76
A
PHE
77
n
77
PHE
77
A
ALA
78
n
78
ALA
78
A
TYR
79
n
79
TYR
79
A
TRP
80
n
80
TRP
80
A
ALA
81
n
81
ALA
81
A
ALA
82
n
82
ALA
82
A
HIS
83
n
83
HIS
83
A
GLN
84
n
84
GLN
84
A
PRO
85
n
85
PRO
85
A
TRP
86
n
86
TRP
86
A
SER
87
n
87
SER
87
A
ARG
88
n
88
ARG
88
A
GLY
89
n
89
GLY
89
A
GLY
90
n
90
GLY
90
A
HIS
91
n
91
HIS
91
A
CYS
92
n
92
CYS
92
A
VAL
93
n
93
VAL
93
A
ALA
94
n
94
ALA
94
A
LEU
95
n
95
LEU
95
A
CYS
96
n
96
CYS
96
A
THR
97
n
97
THR
97
A
ARG
98
n
98
ARG
98
A
GLY
99
n
99
GLY
99
A
GLY
100
n
100
GLY
100
A
TYR
101
n
101
TYR
101
A
TRP
102
n
102
TRP
102
A
ARG
103
n
103
ARG
103
A
ARG
104
n
104
ARG
104
A
ALA
105
n
105
ALA
105
A
HIS
106
n
106
HIS
106
A
CYS
107
n
107
CYS
107
A
LEU
108
n
108
LEU
108
A
ARG
109
n
109
ARG
109
A
ARG
110
n
110
ARG
110
A
LEU
111
n
111
LEU
111
A
PRO
112
n
112
PRO
112
A
PHE
113
n
113
PHE
113
A
ILE
114
n
114
ILE
114
A
CYS
115
n
115
CYS
115
A
SER
116
n
116
SER
116
A
TYR
117
n
117
TYR
117
A
n
1
1
B
CYS
2
n
2
CYS
2
B
ARG
3
n
3
ARG
3
B
TYR
4
n
4
TYR
4
B
LEU
5
n
5
LEU
5
B
LEU
6
n
6
LEU
6
B
VAL
7
n
7
VAL
7
B
ARG
8
n
8
ARG
8
B
SER
9
n
9
SER
9
B
LEU
10
n
10
LEU
10
B
GLN
11
n
11
GLN
11
B
THR
12
n
12
THR
12
B
PHE
13
n
13
PHE
13
B
SER
14
n
14
SER
14
B
GLN
15
n
15
GLN
15
B
ALA
16
n
16
ALA
16
B
TRP
17
n
17
TRP
17
B
PHE
18
n
18
PHE
18
B
THR
19
n
19
THR
19
B
CYS
20
n
20
CYS
20
B
ARG
21
n
21
ARG
21
B
ARG
22
n
22
ARG
22
B
CYS
23
n
23
CYS
23
B
TYR
24
n
24
TYR
24
B
ARG
25
n
25
ARG
25
B
GLY
26
n
26
GLY
26
B
ASN
27
n
27
ASN
27
B
LEU
28
n
28
LEU
28
B
VAL
29
n
29
VAL
29
B
SER
30
n
30
SER
30
B
ILE
31
n
31
ILE
31
B
HIS
32
n
32
HIS
32
B
ASN
33
n
33
ASN
33
B
PHE
34
n
34
PHE
34
B
ASN
35
n
35
ASN
35
B
ILE
36
n
36
ILE
36
B
ASN
37
n
37
ASN
37
B
TYR
38
n
38
TYR
38
B
ARG
39
n
39
ARG
39
B
ILE
40
n
40
ILE
40
B
GLN
41
n
41
GLN
41
B
CYS
42
n
42
CYS
42
B
SER
43
n
43
SER
43
B
VAL
44
n
44
VAL
44
B
SER
45
n
45
SER
45
B
ALA
46
n
46
ALA
46
B
LEU
47
n
47
LEU
47
B
ASN
48
n
48
ASN
48
B
GLN
49
n
49
GLN
49
B
GLY
50
n
50
GLY
50
B
GLN
51
n
51
GLN
51
B
VAL
52
n
52
VAL
52
B
TRP
53
n
53
TRP
53
B
ILE
54
n
54
ILE
54
B
GLY
55
n
55
GLY
55
B
GLY
56
n
56
GLY
56
B
ARG
57
n
57
ARG
57
B
ILE
58
n
58
ILE
58
B
THR
59
n
59
THR
59
B
GLY
60
n
60
GLY
60
B
SER
61
n
61
SER
61
B
GLY
62
n
62
GLY
62
B
ARG
63
n
63
ARG
63
B
CYS
64
n
64
CYS
64
B
ARG
65
n
65
ARG
65
B
ARG
66
n
66
ARG
66
B
PHE
67
n
67
PHE
67
B
GLN
68
n
68
GLN
68
B
TRP
69
n
69
TRP
69
B
VAL
70
n
70
VAL
70
B
ASP
71
n
71
ASP
71
B
GLY
72
n
72
GLY
72
B
SER
73
n
73
SER
73
B
ARG
74
n
74
ARG
74
B
TRP
75
n
75
TRP
75
B
ASN
76
n
76
ASN
76
B
PHE
77
n
77
PHE
77
B
ALA
78
n
78
ALA
78
B
TYR
79
n
79
TYR
79
B
TRP
80
n
80
TRP
80
B
ALA
81
n
81
ALA
81
B
ALA
82
n
82
ALA
82
B
HIS
83
n
83
HIS
83
B
GLN
84
n
84
GLN
84
B
PRO
85
n
85
PRO
85
B
TRP
86
n
86
TRP
86
B
SER
87
n
87
SER
87
B
ARG
88
n
88
ARG
88
B
GLY
89
n
89
GLY
89
B
GLY
90
n
90
GLY
90
B
HIS
91
n
91
HIS
91
B
CYS
92
n
92
CYS
92
B
VAL
93
n
93
VAL
93
B
ALA
94
n
94
ALA
94
B
LEU
95
n
95
LEU
95
B
CYS
96
n
96
CYS
96
B
THR
97
n
97
THR
97
B
ARG
98
n
98
ARG
98
B
GLY
99
n
99
GLY
99
B
GLY
100
n
100
GLY
100
B
TYR
101
n
101
TYR
101
B
TRP
102
n
102
TRP
102
B
ARG
103
n
103
ARG
103
B
ARG
104
n
104
ARG
104
B
ALA
105
n
105
ALA
105
B
HIS
106
n
106
HIS
106
B
CYS
107
n
107
CYS
107
B
LEU
108
n
108
LEU
108
B
ARG
109
n
109
ARG
109
B
ARG
110
n
110
ARG
110
B
LEU
111
n
111
LEU
111
B
PRO
112
n
112
PRO
112
B
PHE
113
n
113
PHE
113
B
ILE
114
n
114
ILE
114
B
CYS
115
n
115
CYS
115
B
SER
116
n
116
SER
116
B
TYR
117
n
117
TYR
117
B
author_and_software_defined_assembly
PQS
1
monomeric
author_and_software_defined_assembly
PQS
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLN
11
A
N
GLN
11
A
O
LEU
111
A
O
LEU
111
A
N
SER
116
A
N
SER
116
A
O
ASN
27
A
O
ASN
27
A
N
GLN
68
A
N
GLN
68
A
O
ARG
57
A
O
ARG
57
A
N
ALA
94
A
N
ALA
94
A
O
ARG
103
A
O
ARG
103
B
N
GLN
11
B
N
GLN
11
B
O
LEU
111
B
O
LEU
111
B
N
SER
116
B
N
SER
116
B
O
ASN
27
B
O
ASN
27
B
N
GLN
68
B
N
GLN
68
B
O
ARG
57
B
O
ARG
57
B
N
ALA
94
B
N
ALA
94
B
O
ARG
103
B
O
ARG
103
1
B
CG
ARG
3
B
CG
ARG
3
1
Y
1
B
CD
ARG
3
B
CD
ARG
3
1
Y
1
B
NE
ARG
3
B
NE
ARG
3
1
Y
1
B
CZ
ARG
3
B
CZ
ARG
3
1
Y
1
B
NH1
ARG
3
B
NH1
ARG
3
1
Y
1
B
NH2
ARG
3
B
NH2
ARG
3
1
Y
1
B
CG
ARG
98
B
CG
ARG
98
1
Y
1
B
CD
ARG
98
B
CD
ARG
98
1
Y
1
B
NE
ARG
98
B
NE
ARG
98
1
Y
1
B
CZ
ARG
98
B
CZ
ARG
98
1
Y
1
B
NH1
ARG
98
B
NH1
ARG
98
1
Y
1
B
NH2
ARG
98
B
NH2
ARG
98
1
Y
1
A
THR
1
A
THR
1
1
Y
1
A
CYS
2
A
CYS
2
1
Y
1
B
THR
1
B
THR
1
1
Y
1
A
TRP
86
-116.10
-73.36
1
B
LEU
47
-118.71
52.72
1
B
ASN
48
-36.32
98.53
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
ION.PARAM
ION.TOP
GLYCEROL.PAR
GLYCEROL.TOP
27.1
17.08
0.00
10.16
-9.14
0.00
-7.95
N-TERMINAL RESIDUES THR A1 AND CYS A2 WERE NOT SEEN IN ELECTRON DENSITY MAPS N-TERMINAL RESIDUE THR B1 WERE NOT SEEN IN ELECTRON DENSITY MAPS. NO SIDE CHAIN DENSITY SEEN FOR RESIDUES ARG B3 AND ARG B98 WHICH WERE MODELED AS ALANINES IN THE FINAL STRUCTURE.
0.264
0.008
0.234
0.234
1.80
36.18
1001
21127
4.7
95.9
RANDOM
905624.99
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1LIT
FLAT MODEL
52.0733
0.386404
0.28
0.25
5.00
0.34
0.34
1.80
36.18
158
2124
52
0
1914
0.009
1.6
24.1
0.78
0.90
1.50
1.55
2.00
1.06
2.00
1.63
2.50
0.387
0.031
0.360
1.91
153
3224
6
4.5
92.8
24.0
1.800
40.000
1H8U
21127
0.07000
1
16.2000
10.270
96.0
1.80
1.86
5.180
0.22900
1
91.8
refinement
CNS
1.0
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
Crystal Structure of the Eosinophil Major Basic Protein at 1.8A: An Atypical Lectin with a Paradigm Shift in Specificity
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
2
N
N
2
N
N
2
N
N
4
N
N
4
N
N
A
THR
12
A
THR
12
HELX_P
A
ARG
25
A
ARG
25
1
1
14
A
ASN
33
A
ASN
33
HELX_P
A
SER
45
A
SER
45
1
2
13
B
THR
12
B
THR
12
HELX_P
B
ARG
25
B
ARG
25
1
3
14
B
ASN
33
B
ASN
33
HELX_P
B
ALA
46
B
ALA
46
1
4
14
disulf
2.015
A
CYS
20
A
SG
CYS
20
1_555
A
CYS
115
A
SG
CYS
115
1_555
disulf
2.035
A
CYS
92
A
SG
CYS
92
1_555
A
CYS
107
A
SG
CYS
107
1_555
disulf
2.020
B
CYS
20
B
SG
CYS
20
1_555
B
CYS
115
B
SG
CYS
115
1_555
disulf
2.038
B
CYS
92
B
SG
CYS
92
1_555
B
CYS
107
B
SG
CYS
107
1_555
LECTIN
LECTIN, EOSINOPHIL GRANULE PROTEIN, EMBP
given
0.717976
-0.022182
0.695715
-0.024788
-0.999673
-0.006293
0.695627
-0.012728
-0.718291
-29.55600
18.16900
71.51000
EMBP_HUMAN
UNP
1
P13727
106
222
1H8U
1
117
P13727
A
1
1
117
106
222
1H8U
1
117
P13727
B
1
1
117
3
4
3
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
4
A
TYR
4
A
GLN
11
A
GLN
11
A
LEU
111
A
LEU
111
A
SER
116
A
SER
116
A
ASN
27
A
ASN
27
A
LEU
28
A
LEU
28
A
ARG
66
A
ARG
66
A
TRP
69
A
TRP
69
A
GLN
51
A
GLN
51
A
THR
59
A
THR
59
A
CYS
92
A
CYS
92
A
CYS
96
A
CYS
96
A
TRP
102
A
TRP
102
A
ALA
105
A
ALA
105
B
TYR
4
B
TYR
4
B
GLN
11
B
GLN
11
B
LEU
111
B
LEU
111
B
SER
116
B
SER
116
B
ASN
27
B
ASN
27
B
LEU
28
B
LEU
28
B
ARG
66
B
ARG
66
B
TRP
69
B
TRP
69
B
GLN
51
B
GLN
51
B
THR
59
B
THR
59
B
CYS
92
B
CYS
92
B
CYS
96
B
CYS
96
B
TRP
102
B
TRP
102
B
ALA
105
B
ALA
105
BINDING SITE FOR RESIDUE SO4 A1118
Software
8
BINDING SITE FOR RESIDUE SO4 A1119
Software
8
BINDING SITE FOR RESIDUE SO4 A1120
Software
7
BINDING SITE FOR RESIDUE SO4 A1121
Software
3
BINDING SITE FOR RESIDUE SO4 A1122
Software
6
BINDING SITE FOR RESIDUE SO4 B1118
Software
4
BINDING SITE FOR RESIDUE SO4 B1119
Software
6
BINDING SITE FOR RESIDUE SO4 B1120
Software
3
BINDING SITE FOR RESIDUE GOL A1123
Software
6
BINDING SITE FOR RESIDUE GOL A1124
Software
6
A
GLY
90
A
GLY
90
8
1_555
A
HIS
91
A
HIS
91
8
1_555
A
HIS
106
A
HIS
106
8
1_555
A
CYS
107
A
CYS
107
8
1_555
A
HOH
2039
M
HOH
8
1_555
A
HOH
2071
M
HOH
8
1_555
A
HOH
2078
M
HOH
8
1_555
A
HOH
2082
M
HOH
8
1_555
A
ARG
3
A
ARG
3
8
1_555
A
ARG
65
A
ARG
65
8
1_555
A
ARG
88
A
ARG
88
8
1_555
A
HIS
91
A
HIS
91
8
1_555
A
ARG
104
A
ARG
104
8
1_555
A
HOH
2076
M
HOH
8
1_555
A
HOH
2079
M
HOH
8
1_555
A
HOH
2080
M
HOH
8
1_555
A
ARG
103
A
ARG
103
7
1_555
A
ALA
105
A
ALA
105
7
1_555
A
HIS
106
A
HIS
106
7
1_555
A
ARG
109
A
ARG
109
7
1_555
A
HOH
2063
M
HOH
7
1_555
A
HOH
2081
M
HOH
7
1_555
A
HOH
2082
M
HOH
7
1_555
A
ILE
36
A
ILE
36
3
1_555
A
ARG
63
A
ARG
63
3
1_555
A
HOH
2084
M
HOH
3
1_555
A
LEU
10
A
LEU
10
6
1_555
A
THR
12
A
THR
12
6
1_555
A
GLN
15
A
GLN
15
6
1_555
A
ARG
110
A
ARG
110
6
1_555
A
HOH
2070
M
HOH
6
1_555
A
HOH
2085
M
HOH
6
1_555
B
GLY
90
B
GLY
90
4
1_555
B
HIS
91
B
HIS
91
4
1_555
B
HIS
106
B
HIS
106
4
1_555
B
CYS
107
B
CYS
107
4
1_555
B
ARG
65
B
ARG
65
6
1_555
B
SER
87
B
SER
87
6
1_555
B
ARG
88
B
ARG
88
6
1_555
B
HIS
91
B
HIS
91
6
1_555
B
ARG
104
B
ARG
104
6
1_555
B
HOH
2058
N
HOH
6
1_555
B
GLY
60
B
GLY
60
3
1_555
B
SER
61
B
SER
61
3
1_555
B
HOH
2039
N
HOH
3
1_555
A
ARG
22
A
ARG
22
6
1_555
A
PHE
77
A
PHE
77
6
1_555
A
ALA
78
A
ALA
78
6
1_555
A
HOH
2086
M
HOH
6
1_555
A
HOH
2087
M
HOH
6
1_555
B
PHE
34
B
PHE
34
6
1_555
A
SER
14
A
SER
14
6
1_555
A
GLN
15
A
GLN
15
6
1_555
A
HOH
2011
M
HOH
6
1_555
B
ARG
39
B
ARG
39
6
1_555
B
ARG
63
B
ARG
63
6
1_555
B
HOH
2026
N
HOH
6
1_555
5
C 1 2 1