0.016949
0.000000
0.001841
0.000000
0.030488
0.000000
0.000000
0.000000
0.018322
0.00000
0.00000
0.00000
Pauptit, R.A.
Rowsell, S.
Breeze, A.L.
Murshudov, G.N.
Dennis, C.A.
Derbyshire, D.J.
Weston, S.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
96.20
90.00
59.000
32.800
54.900
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C9 H12 N O6 P
261.168
n
O-PHOSPHOTYROSINE
PHOSPHONOTYROSINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
O
N
295
N
C
Y
296
N
C
Y
297
N
C
Y
298
N
C
Y
299
N
C
Y
300
N
C
Y
301
N
C
N
302
N
O
N
303
N
P
N
304
N
O
N
305
N
O
N
306
N
O
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
N
N
320
S
C
N
321
N
C
N
322
N
O
N
323
N
C
N
324
N
O
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
R
C
N
338
N
O
N
339
N
C
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
N
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
N
388
N
O
N
389
N
O
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
N
N
402
S
C
N
403
N
C
N
404
N
O
N
405
N
C
N
406
N
C
N
407
N
C
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
doub
Y
290
N
sing
Y
291
N
sing
N
292
N
sing
Y
293
N
doub
N
294
N
sing
Y
295
N
doub
N
296
N
sing
Y
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
Y
346
N
doub
Y
347
N
sing
Y
348
N
sing
N
349
N
sing
Y
350
N
doub
Y
351
N
sing
Y
352
N
sing
N
353
N
sing
Y
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
doub
N
358
N
sing
Y
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
doub
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
Y
374
N
doub
Y
375
N
sing
Y
376
N
sing
N
377
N
sing
Y
378
N
doub
N
379
N
sing
Y
380
N
doub
N
381
N
sing
Y
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
doub
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
57
1397
10.1107/S0907444901012434
11567151
NMR Trial Models: Experiences with the Colicin Immunity Protein Im7 and the P85Alpha C-Terminal Sh2-Peptide Complex
2001
10.2210/pdb1h9o/pdb
pdb_00001h9o
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
287.0
1
IMAGE PLATE
1995-09-15
MARRESEARCH
GRAPHITE
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
ENRAF-NONIUS FR571
CONTAINS AN N-TERMINAL EXTENSION (GSPI) DERIVED FROM THE RECOMBINANT EXPRESSION VECTOR
12612.094
PHOSPHATIDYLINOSITOL 3-KINASE
C-TERMINAL SH2 DOMAIN, P85-ALPHA REGULATORY SUBUNIT RESIDUES 617 - 724
1
man
polymer
TYROSINE-PHOSPHORYLATED PENTAPEPTIDE
701.767
BETA-PLATELET-DERIVED GROWTH FACTOR RECEPTOR
RESIDUES 751 - 755
1
syn
polymer
18.015
water
110
nat
water
no
no
GSPIPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINKTATGYGFAEPYNLYSSLK
ELVLHYQHTSLVQHNDSLNVTLAYPVYAQQRR
GSPIPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINKTATGYGFAEPYNLYSSLK
ELVLHYQHTSLVQHNDSLNVTLAYPVYAQQRR
A
polypeptide(L)
no
yes
(PTR)VPML
YVPML
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
9606
HOMO SAPIENS
562
ESCHERICHIA COLI
W3110 (CGSC 6564)
1
2.1
43
NMR TRIAL MODEL
7.00
40MG/ML PROTEIN IN 20 MM PHOSPHATE PH6.2 + PEG8000, RESERVOIR WITH SAME PHOSPHATE + PEG8000 + 250MM NACL, pH 7.00
diffrn_source
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
pdbx_unobs_or_zero_occ_atoms
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Data collection
Advisory
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2001-03-19
1
1
2011-05-07
1
2
2011-07-13
1
3
2017-06-28
1
4
2023-12-13
_diffrn_source.type
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_struct_conn.pdbx_leaving_atom_flag
NMR STUDY OF THE SH3 DOMAIN FROM FYN PROTO-ONCOGENE TYROSINE KINASE COMPLEXED WITH THE SYNTHETIC PEPTIDE P2L CORRESPONDING TO RESIDUES 91-104 OF THE P85 SUBUNIT OF PI3-KINASE, FAMILY OF 25 STRUCTURES
NMR STUDY OF THE SH3 DOMAIN FROM FYN PROTO-ONCOGENE TYROSINE KINASE KINASE COMPLEXED WITH THE SYNTHETIC PEPTIDE P2L CORRESPONDING TO RESIDUES 91-104 OF THE P85 SUBUNIT OF PI3-KINASE, MINIMIZED AVERAGE (PROBMAP) STRUCTURE
STRUCTURE OF BCR-HOMOLOGY (BH) DOMAIN
PHOSPHATIDYLINOSITOL 3-KINASE P85-ALPHA SUBUNIT SH3 DOMAIN, RESIDUES 1-85
PHOSPHATIDYLINOSITOL 3-KINASE, P85-ALPHA SUBUNIT: C-TERMINAL SH2 DOMAIN COMPLEXED WITH A TYR751 PHOSPHOPEPTIDE FROM THE PDGF RECEPTOR, NMR, MINIMIZED MEAN STRUCTURE
PHOSPHATIDYLINOSITOL 3-KINASE (PI3K) (SH3 DOMAIN) (NMR, MINIMIZED AVERAGE STRUCTURE)
PHOSPHATIDYLINOSITOL 3-KINASE (PI3K) (SH3 DOMAIN) (NMR, 30 STRUCTURES)
PDBE
Y
PDBE
2001-03-14
REL
REL
1
A
O
HOH
2035
6.69
HOH
water
9606
HUMAN
HOMO SAPIENS
sample
PHOSPHATIDYLINOSITOL 3-KINASE ACTIVATES (PHOSPHORYLATED)
PROTEIN-TYROSINE KINASES, THROUGH ITS SH2 DOMAIN
1PIC
PDB ENTRY 1PIC
PDB
experimental model
HOH
2001
3
HOH
HOH
2001
A
HOH
2002
3
HOH
HOH
2002
A
HOH
2003
3
HOH
HOH
2003
A
HOH
2004
3
HOH
HOH
2004
A
HOH
2005
3
HOH
HOH
2005
A
HOH
2006
3
HOH
HOH
2006
A
HOH
2007
3
HOH
HOH
2007
A
HOH
2008
3
HOH
HOH
2008
A
HOH
2009
3
HOH
HOH
2009
A
HOH
2010
3
HOH
HOH
2010
A
HOH
2011
3
HOH
HOH
2011
A
HOH
2012
3
HOH
HOH
2012
A
HOH
2013
3
HOH
HOH
2013
A
HOH
2014
3
HOH
HOH
2014
A
HOH
2015
3
HOH
HOH
2015
A
HOH
2016
3
HOH
HOH
2016
A
HOH
2017
3
HOH
HOH
2017
A
HOH
2018
3
HOH
HOH
2018
A
HOH
2019
3
HOH
HOH
2019
A
HOH
2020
3
HOH
HOH
2020
A
HOH
2021
3
HOH
HOH
2021
A
HOH
2022
3
HOH
HOH
2022
A
HOH
2023
3
HOH
HOH
2023
A
HOH
2024
3
HOH
HOH
2024
A
HOH
2025
3
HOH
HOH
2025
A
HOH
2026
3
HOH
HOH
2026
A
HOH
2027
3
HOH
HOH
2027
A
HOH
2028
3
HOH
HOH
2028
A
HOH
2029
3
HOH
HOH
2029
A
HOH
2030
3
HOH
HOH
2030
A
HOH
2031
3
HOH
HOH
2031
A
HOH
2032
3
HOH
HOH
2032
A
HOH
2033
3
HOH
HOH
2033
A
HOH
2034
3
HOH
HOH
2034
A
HOH
2035
3
HOH
HOH
2035
A
HOH
2036
3
HOH
HOH
2036
A
HOH
2037
3
HOH
HOH
2037
A
HOH
2038
3
HOH
HOH
2038
A
HOH
2039
3
HOH
HOH
2039
A
HOH
2040
3
HOH
HOH
2040
A
HOH
2041
3
HOH
HOH
2041
A
HOH
2042
3
HOH
HOH
2042
A
HOH
2043
3
HOH
HOH
2043
A
HOH
2044
3
HOH
HOH
2044
A
HOH
2045
3
HOH
HOH
2045
A
HOH
2046
3
HOH
HOH
2046
A
HOH
2047
3
HOH
HOH
2047
A
HOH
2048
3
HOH
HOH
2048
A
HOH
2049
3
HOH
HOH
2049
A
HOH
2050
3
HOH
HOH
2050
A
HOH
2051
3
HOH
HOH
2051
A
HOH
2052
3
HOH
HOH
2052
A
HOH
2053
3
HOH
HOH
2053
A
HOH
2054
3
HOH
HOH
2054
A
HOH
2055
3
HOH
HOH
2055
A
HOH
2056
3
HOH
HOH
2056
A
HOH
2057
3
HOH
HOH
2057
A
HOH
2058
3
HOH
HOH
2058
A
HOH
2059
3
HOH
HOH
2059
A
HOH
2060
3
HOH
HOH
2060
A
HOH
2061
3
HOH
HOH
2061
A
HOH
2062
3
HOH
HOH
2062
A
HOH
2063
3
HOH
HOH
2063
A
HOH
2064
3
HOH
HOH
2064
A
HOH
2065
3
HOH
HOH
2065
A
HOH
2066
3
HOH
HOH
2066
A
HOH
2067
3
HOH
HOH
2067
A
HOH
2068
3
HOH
HOH
2068
A
HOH
2069
3
HOH
HOH
2069
A
HOH
2070
3
HOH
HOH
2070
A
HOH
2071
3
HOH
HOH
2071
A
HOH
2072
3
HOH
HOH
2072
A
HOH
2073
3
HOH
HOH
2073
A
HOH
2074
3
HOH
HOH
2074
A
HOH
2075
3
HOH
HOH
2075
A
HOH
2076
3
HOH
HOH
2076
A
HOH
2077
3
HOH
HOH
2077
A
HOH
2078
3
HOH
HOH
2078
A
HOH
2079
3
HOH
HOH
2079
A
HOH
2080
3
HOH
HOH
2080
A
HOH
2081
3
HOH
HOH
2081
A
HOH
2082
3
HOH
HOH
2082
A
HOH
2083
3
HOH
HOH
2083
A
HOH
2084
3
HOH
HOH
2084
A
HOH
2085
3
HOH
HOH
2085
A
HOH
2086
3
HOH
HOH
2086
A
HOH
2087
3
HOH
HOH
2087
A
HOH
2088
3
HOH
HOH
2088
A
HOH
2089
3
HOH
HOH
2089
A
HOH
2090
3
HOH
HOH
2090
A
HOH
2091
3
HOH
HOH
2091
A
HOH
2092
3
HOH
HOH
2092
A
HOH
2093
3
HOH
HOH
2093
A
HOH
2094
3
HOH
HOH
2094
A
HOH
2095
3
HOH
HOH
2095
A
HOH
2096
3
HOH
HOH
2096
A
HOH
2097
3
HOH
HOH
2097
A
HOH
2098
3
HOH
HOH
2098
A
HOH
2099
3
HOH
HOH
2099
A
HOH
2100
3
HOH
HOH
2100
A
HOH
2101
3
HOH
HOH
2101
A
HOH
2102
3
HOH
HOH
2102
A
HOH
2103
3
HOH
HOH
2103
A
HOH
2001
3
HOH
HOH
2001
B
HOH
2002
3
HOH
HOH
2002
B
HOH
2003
3
HOH
HOH
2003
B
HOH
2004
3
HOH
HOH
2004
B
HOH
2005
3
HOH
HOH
2005
B
HOH
2006
3
HOH
HOH
2006
B
HOH
2007
3
HOH
HOH
2007
B
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
PRO
3
n
3
PRO
3
A
ILE
4
n
4
ILE
4
A
PRO
5
n
5
PRO
5
A
HIS
6
n
6
HIS
6
A
HIS
7
n
7
HIS
7
A
ASP
8
n
8
ASP
8
A
GLU
9
n
9
GLU
9
A
LYS
10
n
10
LYS
10
A
THR
11
n
11
THR
11
A
TRP
12
n
12
TRP
12
A
ASN
13
n
13
ASN
13
A
VAL
14
n
14
VAL
14
A
GLY
15
n
15
GLY
15
A
SER
16
n
16
SER
16
A
SER
17
n
17
SER
17
A
ASN
18
n
18
ASN
18
A
ARG
19
n
19
ARG
19
A
ASN
20
n
20
ASN
20
A
LYS
21
n
21
LYS
21
A
ALA
22
n
22
ALA
22
A
GLU
23
n
23
GLU
23
A
ASN
24
n
24
ASN
24
A
LEU
25
n
25
LEU
25
A
LEU
26
n
26
LEU
26
A
ARG
27
n
27
ARG
27
A
GLY
28
n
28
GLY
28
A
LYS
29
n
29
LYS
29
A
ARG
30
n
30
ARG
30
A
ASP
31
n
31
ASP
31
A
GLY
32
n
32
GLY
32
A
THR
33
n
33
THR
33
A
PHE
34
n
34
PHE
34
A
LEU
35
n
35
LEU
35
A
VAL
36
n
36
VAL
36
A
ARG
37
n
37
ARG
37
A
GLU
38
n
38
GLU
38
A
SER
39
n
39
SER
39
A
SER
40
n
40
SER
40
A
LYS
41
n
41
LYS
41
A
GLN
42
n
42
GLN
42
A
GLY
43
n
43
GLY
43
A
CYS
44
n
44
CYS
44
A
TYR
45
n
45
TYR
45
A
ALA
46
n
46
ALA
46
A
CYS
47
n
47
CYS
47
A
SER
48
n
48
SER
48
A
VAL
49
n
49
VAL
49
A
VAL
50
n
50
VAL
50
A
VAL
51
n
51
VAL
51
A
ASP
52
n
52
ASP
52
A
GLY
53
n
53
GLY
53
A
GLU
54
n
54
GLU
54
A
VAL
55
n
55
VAL
55
A
LYS
56
n
56
LYS
56
A
HIS
57
n
57
HIS
57
A
CYS
58
n
58
CYS
58
A
VAL
59
n
59
VAL
59
A
ILE
60
n
60
ILE
60
A
ASN
61
n
61
ASN
61
A
LYS
62
n
62
LYS
62
A
THR
63
n
63
THR
63
A
ALA
64
n
64
ALA
64
A
THR
65
n
65
THR
65
A
GLY
66
n
66
GLY
66
A
TYR
67
n
67
TYR
67
A
GLY
68
n
68
GLY
68
A
PHE
69
n
69
PHE
69
A
ALA
70
n
70
ALA
70
A
GLU
71
n
71
GLU
71
A
PRO
72
n
72
PRO
72
A
TYR
73
n
73
TYR
73
A
ASN
74
n
74
ASN
74
A
LEU
75
n
75
LEU
75
A
TYR
76
n
76
TYR
76
A
SER
77
n
77
SER
77
A
SER
78
n
78
SER
78
A
LEU
79
n
79
LEU
79
A
LYS
80
n
80
LYS
80
A
GLU
81
n
81
GLU
81
A
LEU
82
n
82
LEU
82
A
VAL
83
n
83
VAL
83
A
LEU
84
n
84
LEU
84
A
HIS
85
n
85
HIS
85
A
TYR
86
n
86
TYR
86
A
GLN
87
n
87
GLN
87
A
HIS
88
n
88
HIS
88
A
THR
89
n
89
THR
89
A
SER
90
n
90
SER
90
A
LEU
91
n
91
LEU
91
A
VAL
92
n
92
VAL
92
A
GLN
93
n
93
GLN
93
A
HIS
94
n
94
HIS
94
A
ASN
95
n
95
ASN
95
A
ASP
96
n
96
ASP
96
A
SER
97
n
97
SER
97
A
LEU
98
n
98
LEU
98
A
ASN
99
n
99
ASN
99
A
VAL
100
n
100
VAL
100
A
THR
101
n
101
THR
101
A
LEU
102
n
102
LEU
102
A
ALA
103
n
103
ALA
103
A
TYR
104
n
104
TYR
104
A
PRO
105
n
105
PRO
105
A
VAL
106
n
106
VAL
106
A
TYR
107
n
107
TYR
107
A
ALA
108
n
108
ALA
108
A
GLN
109
n
109
GLN
109
A
n
110
110
A
n
111
111
A
n
112
112
A
PTR
1
n
1
PTR
1
B
VAL
2
n
2
VAL
2
B
PRO
3
n
3
PRO
3
B
MET
4
n
4
MET
4
B
LEU
5
n
5
LEU
5
B
author_and_software_defined_assembly
PISA
2
dimeric
970
-10.74
6130
B
PTR
1
O-PHOSPHOTYROSINE
B
PTR
1
TYR
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
68
A
N
GLY
68
A
O
ASN
61
A
O
ASN
61
A
N
ILE
60
A
N
ILE
60
A
O
TYR
45
A
O
TYR
45
A
N
VAL
50
A
N
VAL
50
A
O
THR
33
A
O
THR
33
A
N
PHE
34
A
N
PHE
34
A
O
TYR
104
A
O
TYR
104
1
A
CG
LYS
41
A
CG
LYS
41
0
Y
1
A
CD
LYS
41
A
CD
LYS
41
0
Y
1
A
CE
LYS
41
A
CE
LYS
41
0
Y
1
A
NZ
LYS
41
A
NZ
LYS
41
0
Y
1
A
NZ
LYS
62
A
NZ
LYS
62
0
Y
1
A
CA
GLN
109
A
CA
GLN
109
1
Y
1
A
C
GLN
109
A
C
GLN
109
1
Y
1
A
O
GLN
109
A
O
GLN
109
1
Y
1
A
CB
GLN
109
A
CB
GLN
109
1
Y
1
A
CG
GLN
109
A
CG
GLN
109
1
Y
1
A
CD
GLN
109
A
CD
GLN
109
1
Y
1
A
OE1
GLN
109
A
OE1
GLN
109
1
Y
1
A
NE2
GLN
109
A
NE2
GLN
109
1
Y
1
A
GLN
110
A
GLN
110
1
Y
1
A
ARG
111
A
ARG
111
1
Y
1
A
ARG
112
A
ARG
112
1
Y
1
14.84
2.10
111.80
126.64
A
A
A
CG
CD
NE
ARG
ARG
ARG
30
30
30
A
A
A
N
1
12.65
1.40
123.60
136.25
A
A
A
CD
NE
CZ
ARG
ARG
ARG
30
30
30
A
A
A
N
1
-9.32
0.50
120.30
110.98
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
30
30
30
A
A
A
N
1
4.49
0.50
120.30
124.79
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
30
30
30
B
B
B
N
1
10.16
0.50
120.30
130.46
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
30
30
30
A
A
A
N
1
-4.75
0.50
120.30
115.55
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
30
30
30
B
B
B
N
1
5.47
0.90
118.30
123.77
A
A
A
CB
CG
OD2
ASP
ASP
ASP
52
52
52
N
1
5.96
0.90
118.30
124.26
A
A
A
CB
CG
OD2
ASP
ASP
ASP
96
96
96
A
A
A
N
1
-13.26
1.60
122.70
109.44
A
A
A
O
C
N
ALA
ALA
GLN
108
108
109
Y
1
A
A
OD1
OD1
ASN
ASN
20
20
2.06
1_555
2_556
1
A
ALA
70
-178.02
149.46
1
A
PRO
72
-96.86
39.48
1
A
ASN
95
-166.91
118.90
1
A
LEU
98
-102.92
63.22
18.9
-0.10
0.00
0.15
0.72
0.00
-0.59
HYDROGENS ADDED IN RIDING POSITIONS
0.219
0.163
0.168
1.79
54
927
9283
10.0
93
4.2
.134
RANDOM
1
THROUGHOUT
0
MOLECULAR REPLACEMENT
.154
.147
PDB ENTRY 1PIC
1.79
54
110
1005
0
0
895
0.018
0.021
2.0
1.9
1.3
1.5
2.3
2.0
2.9
3.0
4.7
4.5
.122
0.2
1.790
54.000
1H9O
9283
0.000
0.05000
0.05000
1
4.000
93.0
refinement
REFMAC
data reduction
XDS
data scaling
XDS
phasing
AMoRE
PHOSPHATIDYLINOSITOL 3-KINASE, P85-ALPHA SUBUNIT: C-TERMINAL SH2 DOMAIN COMPLEXED WITH A TYR751 PHOSPHOPEPTIDE FROM THE PDGF RECEPTOR, CRYSTAL STRUCTURE AT 1.79 A
1
N
N
2
N
N
3
N
N
3
N
N
HETERODIMER CONSISTING OF P110 AND P85-ALPHA
. THEC-TERMINAL SH2-DOMAIN (CHAIN A) IS A
FRAGMENT OFP85-ALPHA. THE PENTAPEPTIDE (CHAIN B)
IS A FRAGMENT OFPLATELET DERIVED GROWTH FACTOR
RECEPTOR. CHAINSA AND B FORM A COMPLEX
REPRESENTATIVE OF THEINTERACTION BETWEEN PI3 KINASE
AND PDGF-RECEPTOR.
A
ILE
4
A
ILE
4
HELX_P
A
ASP
8
A
ASP
8
5
1
5
A
ASP
8
A
ASP
8
HELX_P
A
TRP
12
A
TRP
12
5
2
5
A
ASN
18
A
ASN
18
HELX_P
A
ARG
27
A
ARG
27
1
3
10
A
SER
78
A
SER
78
HELX_P
A
THR
89
A
THR
89
1
4
12
A
SER
90
A
SER
90
HELX_P
A
HIS
94
A
HIS
94
5
5
5
covale
1.324
both
B
PTR
1
B
C
PTR
1
1_555
B
VAL
2
B
N
VAL
2
1_555
TRANSFERASE/RECEPTOR
TRANSFERASE/RECEPTOR, COMPLEX (PHOSPHOTRANSFERASE-RECEPTOR), PHOSPHOTRANSFERASE, SH2 DOMAIN, SIGNAL TRANSDUCTION, PHOSPHOINOSITIDE 3-KINASE, TRANSFERASE-RECEPTOR complex
A
SER
2
A
SER
2
1
A
PRO
3
A
PRO
3
-3.27
A
GLU
71
A
GLU
71
1
A
PRO
72
A
PRO
72
-2.26
1H9O
PDB
1
1H9O
P85A_HUMAN
UNP
1
P27986
PGDR_HUMAN
UNP
2
P09619
1
4
1H9O
1
4
1H9O
A
1
1
4
617
724
1H9O
5
112
P27986
A
2
5
112
751
755
1H9O
1
5
P09619
B
3
1
5
5
anti-parallel
anti-parallel
anti-parallel
parallel
A
GLY
66
A
GLY
66
A
GLY
68
A
GLY
68
A
GLU
54
A
GLU
54
A
THR
63
A
THR
63
A
TYR
45
A
TYR
45
A
VAL
51
A
VAL
51
A
THR
33
A
THR
33
A
GLU
38
A
GLU
38
A
TYR
104
A
TYR
104
A
PRO
105
A
PRO
105
5
C 1 2 1