0.008072
0.000000
0.005154
0.000000
0.009356
0.000000
0.000000
0.000000
0.011795
0.00000
0.00000
0.00000
Schwabe, J.W.R.
Love, J.D.
Gooch, J.T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
122.56
90.00
123.886
106.882
100.587
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C24 H29 N O2
363.493
6-[1-(3,5,5,8,8-PENTAMETHYL-5,6,7,8-TETRAHYDRONAPHTHALEN-2-YL)CYCLOPROPYL]PYRIDINE-3-CARBOXYLIC ACID
non-polymer
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Ni 2
58.693
NICKEL (II) ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CL
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
S
C
N
140
N
C
N
141
N
O
N
142
N
C
Y
143
N
C
Y
144
N
N
Y
145
N
C
Y
146
N
C
Y
147
N
N
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
S
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
Y
206
N
C
Y
207
N
C
Y
208
N
C
Y
209
N
C
Y
210
N
C
Y
211
N
C
N
212
N
C
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
C
Y
217
N
C
Y
218
N
N
Y
219
N
C
Y
220
N
C
Y
221
N
C
Y
222
N
C
N
223
N
C
N
224
N
O
N
225
N
O
N
226
N
C
N
227
N
C
N
228
N
C
N
229
N
C
N
230
N
C
N
231
N
C
N
232
N
C
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
N
N
263
S
C
N
264
N
C
N
265
N
O
N
266
N
C
N
267
N
C
N
268
N
C
N
269
N
C
N
270
N
N
N
271
N
O
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
C
N
293
N
S
N
294
N
C
N
295
N
O
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
NI
N
308
N
N
N
309
S
C
N
310
N
C
N
311
N
O
N
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
C
Y
318
N
C
N
319
N
O
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
N
C
N
336
N
C
N
337
N
C
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
N
353
N
O
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
N
N
363
S
C
N
364
N
C
N
365
N
O
N
366
R
C
N
367
N
O
N
368
N
C
N
369
N
O
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
N
N
380
S
C
N
381
N
C
N
382
N
O
N
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
N
Y
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
N
393
N
O
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
N
N
407
S
C
N
408
N
C
N
409
N
O
N
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
C
Y
414
N
C
Y
415
N
C
Y
416
N
C
N
417
N
O
N
418
N
O
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
N
N
431
S
C
N
432
N
C
N
433
N
O
N
434
N
C
N
435
N
C
N
436
N
C
N
437
N
O
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
Y
194
N
doub
Y
195
N
sing
N
196
N
sing
Y
197
N
sing
N
198
N
sing
Y
199
N
doub
N
200
N
sing
Y
201
N
sing
N
202
N
sing
Y
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
Y
220
N
doub
Y
221
N
sing
Y
222
N
sing
Y
223
N
doub
N
224
N
sing
Y
225
N
sing
N
226
N
sing
Y
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
doub
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
Y
307
N
doub
Y
308
N
sing
Y
309
N
sing
N
310
N
sing
Y
311
N
doub
N
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
doub
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
Y
376
N
doub
Y
377
N
sing
Y
378
N
sing
N
379
N
sing
Y
380
N
doub
Y
381
N
sing
Y
382
N
sing
N
383
N
sing
Y
384
N
sing
Y
385
N
doub
N
386
N
sing
Y
387
N
doub
N
388
N
sing
Y
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
doub
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
Y
404
N
doub
Y
405
N
sing
Y
406
N
sing
N
407
N
sing
Y
408
N
doub
N
409
N
sing
Y
410
N
doub
N
411
N
sing
Y
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
doub
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
277
11385
10.1074/JBC.M110869200
11782480
The Structural Basis for the Specificity of Retinoid-X Receptor-Selective Agonists: New Insights Into the Role of Helix H12
2002
10.2210/pdb1h9u/pdb
pdb_00001h9u
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
QUANTUM
SINGLE WAVELENGTH
M
x-ray
1
0.933
1.0
ID14-2
ESRF
0.933
SYNCHROTRON
ESRF BEAMLINE ID14-2
24842.645
RETINOID X RECEPTOR, BETA
LIGAND BINDING DOMAIN RESIDUES 299-522
4
man
polymer
363.493
6-[1-(3,5,5,8,8-PENTAMETHYL-5,6,7,8-TETRAHYDRONAPHTHALEN-2-YL)CYCLOPROPYL]PYRIDINE-3-CARBOXYLIC ACID
4
syn
non-polymer
58.693
NICKEL (II) ION
4
syn
non-polymer
35.453
CHLORIDE ION
2
syn
non-polymer
18.015
water
4
nat
water
RXRB
no
no
MPVDRILEAELAVEQKSDQGVEGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNE
LLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS
EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFL
MPVDRILEAELAVEQKSDQGVEGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNE
LLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS
EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFL
A,B,C,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
9606
HOMO SAPIENS
469008
ESCHERICHIA COLI
BL21(DE3)
1
2.82
56.45
7.60
pH 7.60
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2002-04-03
1
1
2011-05-07
1
2
2011-07-13
1
3
2023-12-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
PDBE
Y
PDBE
2001-03-21
REL
LG2
6-[1-(3,5,5,8,8-PENTAMETHYL-5,6,7,8-TETRAHYDRONAPHTHALEN-2-YL)CYCLOPROPYL]PYRIDINE-3-CARBOXYLIC ACID
NI
NICKEL (II) ION
CL
CHLORIDE ION
HOH
water
BINDS TO 9-CIS RETINOIC ACID (9C-RA). INVOLVED IN
RETINOIC ACID RESPONSE PATHWAY. THE C-TERMINAL DOMAIN
IS INVOLVED IN STEROID-BINDING.
1LBD
PDB ENTRY 1LBD
PDB
experimental model
LG2
1
2
LG2
LG2
1
A
NI
2
3
NI
NI
2
A
CL
3
4
CL
CL
3
A
LG2
1
2
LG2
LG2
1
B
NI
2
3
NI
NI
2
B
CL
3
4
CL
CL
3
B
LG2
1
2
LG2
LG2
1
C
NI
2
3
NI
NI
2
C
LG2
1
2
LG2
LG2
1
D
NI
2
3
NI
NI
2
D
HOH
2001
5
HOH
HOH
2001
A
HOH
2001
5
HOH
HOH
2001
B
HOH
2001
5
HOH
HOH
2001
C
HOH
2001
5
HOH
HOH
2001
D
MET
299
n
1
MET
299
A
PRO
300
n
2
PRO
300
A
VAL
301
n
3
VAL
301
A
ASP
302
n
4
ASP
302
A
ARG
303
n
5
ARG
303
A
ILE
304
n
6
ILE
304
A
LEU
305
n
7
LEU
305
A
GLU
306
n
8
GLU
306
A
ALA
307
n
9
ALA
307
A
GLU
308
n
10
GLU
308
A
LEU
309
n
11
LEU
309
A
ALA
310
n
12
ALA
310
A
VAL
311
n
13
VAL
311
A
n
14
312
A
n
15
313
A
n
16
314
A
n
17
315
A
n
18
316
A
n
19
317
A
n
20
318
A
n
21
319
A
n
22
320
A
n
23
321
A
n
24
322
A
n
25
323
A
n
26
324
A
n
27
325
A
n
28
326
A
n
29
327
A
n
30
328
A
n
31
329
A
n
32
330
A
n
33
331
A
n
34
332
A
n
35
333
A
n
36
334
A
PRO
335
n
37
PRO
335
A
VAL
336
n
38
VAL
336
A
THR
337
n
39
THR
337
A
ASN
338
n
40
ASN
338
A
ILE
339
n
41
ILE
339
A
CYS
340
n
42
CYS
340
A
GLN
341
n
43
GLN
341
A
ALA
342
n
44
ALA
342
A
ALA
343
n
45
ALA
343
A
ASP
344
n
46
ASP
344
A
LYS
345
n
47
LYS
345
A
GLN
346
n
48
GLN
346
A
LEU
347
n
49
LEU
347
A
PHE
348
n
50
PHE
348
A
THR
349
n
51
THR
349
A
LEU
350
n
52
LEU
350
A
VAL
351
n
53
VAL
351
A
GLU
352
n
54
GLU
352
A
TRP
353
n
55
TRP
353
A
ALA
354
n
56
ALA
354
A
LYS
355
n
57
LYS
355
A
ARG
356
n
58
ARG
356
A
ILE
357
n
59
ILE
357
A
PRO
358
n
60
PRO
358
A
HIS
359
n
61
HIS
359
A
PHE
360
n
62
PHE
360
A
SER
361
n
63
SER
361
A
SER
362
n
64
SER
362
A
LEU
363
n
65
LEU
363
A
PRO
364
n
66
PRO
364
A
LEU
365
n
67
LEU
365
A
ASP
366
n
68
ASP
366
A
ASP
367
n
69
ASP
367
A
GLN
368
n
70
GLN
368
A
VAL
369
n
71
VAL
369
A
ILE
370
n
72
ILE
370
A
LEU
371
n
73
LEU
371
A
LEU
372
n
74
LEU
372
A
ARG
373
n
75
ARG
373
A
ALA
374
n
76
ALA
374
A
GLY
375
n
77
GLY
375
A
TRP
376
n
78
TRP
376
A
ASN
377
n
79
ASN
377
A
GLU
378
n
80
GLU
378
A
LEU
379
n
81
LEU
379
A
LEU
380
n
82
LEU
380
A
ILE
381
n
83
ILE
381
A
ALA
382
n
84
ALA
382
A
SER
383
n
85
SER
383
A
PHE
384
n
86
PHE
384
A
SER
385
n
87
SER
385
A
HIS
386
n
88
HIS
386
A
ARG
387
n
89
ARG
387
A
SER
388
n
90
SER
388
A
ILE
389
n
91
ILE
389
A
ASP
390
n
92
ASP
390
A
VAL
391
n
93
VAL
391
A
ARG
392
n
94
ARG
392
A
ASP
393
n
95
ASP
393
A
GLY
394
n
96
GLY
394
A
ILE
395
n
97
ILE
395
A
LEU
396
n
98
LEU
396
A
LEU
397
n
99
LEU
397
A
ALA
398
n
100
ALA
398
A
THR
399
n
101
THR
399
A
GLY
400
n
102
GLY
400
A
LEU
401
n
103
LEU
401
A
HIS
402
n
104
HIS
402
A
VAL
403
n
105
VAL
403
A
HIS
404
n
106
HIS
404
A
ARG
405
n
107
ARG
405
A
ASN
406
n
108
ASN
406
A
SER
407
n
109
SER
407
A
ALA
408
n
110
ALA
408
A
HIS
409
n
111
HIS
409
A
SER
410
n
112
SER
410
A
ALA
411
n
113
ALA
411
A
GLY
412
n
114
GLY
412
A
VAL
413
n
115
VAL
413
A
GLY
414
n
116
GLY
414
A
ALA
415
n
117
ALA
415
A
ILE
416
n
118
ILE
416
A
PHE
417
n
119
PHE
417
A
ASP
418
n
120
ASP
418
A
ARG
419
n
121
ARG
419
A
VAL
420
n
122
VAL
420
A
LEU
421
n
123
LEU
421
A
THR
422
n
124
THR
422
A
GLU
423
n
125
GLU
423
A
LEU
424
n
126
LEU
424
A
VAL
425
n
127
VAL
425
A
SER
426
n
128
SER
426
A
LYS
427
n
129
LYS
427
A
MET
428
n
130
MET
428
A
ARG
429
n
131
ARG
429
A
ASP
430
n
132
ASP
430
A
MET
431
n
133
MET
431
A
ARG
432
n
134
ARG
432
A
MET
433
n
135
MET
433
A
ASP
434
n
136
ASP
434
A
LYS
435
n
137
LYS
435
A
THR
436
n
138
THR
436
A
GLU
437
n
139
GLU
437
A
LEU
438
n
140
LEU
438
A
GLY
439
n
141
GLY
439
A
CYS
440
n
142
CYS
440
A
LEU
441
n
143
LEU
441
A
ARG
442
n
144
ARG
442
A
ALA
443
n
145
ALA
443
A
ILE
444
n
146
ILE
444
A
ILE
445
n
147
ILE
445
A
LEU
446
n
148
LEU
446
A
PHE
447
n
149
PHE
447
A
ASN
448
n
150
ASN
448
A
PRO
449
n
151
PRO
449
A
ASP
450
n
152
ASP
450
A
ALA
451
n
153
ALA
451
A
LYS
452
n
154
LYS
452
A
GLY
453
n
155
GLY
453
A
LEU
454
n
156
LEU
454
A
SER
455
n
157
SER
455
A
ASN
456
n
158
ASN
456
A
PRO
457
n
159
PRO
457
A
SER
458
n
160
SER
458
A
GLU
459
n
161
GLU
459
A
VAL
460
n
162
VAL
460
A
GLU
461
n
163
GLU
461
A
VAL
462
n
164
VAL
462
A
LEU
463
n
165
LEU
463
A
ARG
464
n
166
ARG
464
A
GLU
465
n
167
GLU
465
A
LYS
466
n
168
LYS
466
A
VAL
467
n
169
VAL
467
A
TYR
468
n
170
TYR
468
A
ALA
469
n
171
ALA
469
A
SER
470
n
172
SER
470
A
LEU
471
n
173
LEU
471
A
GLU
472
n
174
GLU
472
A
THR
473
n
175
THR
473
A
TYR
474
n
176
TYR
474
A
CYS
475
n
177
CYS
475
A
LYS
476
n
178
LYS
476
A
GLN
477
n
179
GLN
477
A
LYS
478
n
180
LYS
478
A
TYR
479
n
181
TYR
479
A
PRO
480
n
182
PRO
480
A
GLU
481
n
183
GLU
481
A
GLN
482
n
184
GLN
482
A
GLN
483
n
185
GLN
483
A
GLY
484
n
186
GLY
484
A
ARG
485
n
187
ARG
485
A
PHE
486
n
188
PHE
486
A
ALA
487
n
189
ALA
487
A
LYS
488
n
190
LYS
488
A
LEU
489
n
191
LEU
489
A
LEU
490
n
192
LEU
490
A
LEU
491
n
193
LEU
491
A
ARG
492
n
194
ARG
492
A
LEU
493
n
195
LEU
493
A
PRO
494
n
196
PRO
494
A
ALA
495
n
197
ALA
495
A
LEU
496
n
198
LEU
496
A
ARG
497
n
199
ARG
497
A
SER
498
n
200
SER
498
A
ILE
499
n
201
ILE
499
A
GLY
500
n
202
GLY
500
A
LEU
501
n
203
LEU
501
A
LYS
502
n
204
LYS
502
A
CYS
503
n
205
CYS
503
A
LEU
504
n
206
LEU
504
A
GLU
505
n
207
GLU
505
A
HIS
506
n
208
HIS
506
A
LEU
507
n
209
LEU
507
A
PHE
508
n
210
PHE
508
A
PHE
509
n
211
PHE
509
A
PHE
510
n
212
PHE
510
A
LYS
511
n
213
LYS
511
A
LEU
512
n
214
LEU
512
A
ILE
513
n
215
ILE
513
A
GLY
514
n
216
GLY
514
A
ASP
515
n
217
ASP
515
A
THR
516
n
218
THR
516
A
PRO
517
n
219
PRO
517
A
ILE
518
n
220
ILE
518
A
ASP
519
n
221
ASP
519
A
THR
520
n
222
THR
520
A
PHE
521
n
223
PHE
521
A
LEU
522
n
224
LEU
522
A
MET
299
n
1
MET
299
B
PRO
300
n
2
PRO
300
B
VAL
301
n
3
VAL
301
B
ASP
302
n
4
ASP
302
B
ARG
303
n
5
ARG
303
B
ILE
304
n
6
ILE
304
B
LEU
305
n
7
LEU
305
B
GLU
306
n
8
GLU
306
B
ALA
307
n
9
ALA
307
B
GLU
308
n
10
GLU
308
B
LEU
309
n
11
LEU
309
B
ALA
310
n
12
ALA
310
B
VAL
311
n
13
VAL
311
B
n
14
312
B
n
15
313
B
n
16
314
B
n
17
315
B
n
18
316
B
n
19
317
B
n
20
318
B
n
21
319
B
n
22
320
B
n
23
321
B
n
24
322
B
n
25
323
B
n
26
324
B
n
27
325
B
n
28
326
B
n
29
327
B
n
30
328
B
n
31
329
B
n
32
330
B
n
33
331
B
n
34
332
B
n
35
333
B
n
36
334
B
PRO
335
n
37
PRO
335
B
VAL
336
n
38
VAL
336
B
THR
337
n
39
THR
337
B
ASN
338
n
40
ASN
338
B
ILE
339
n
41
ILE
339
B
CYS
340
n
42
CYS
340
B
GLN
341
n
43
GLN
341
B
ALA
342
n
44
ALA
342
B
ALA
343
n
45
ALA
343
B
ASP
344
n
46
ASP
344
B
LYS
345
n
47
LYS
345
B
GLN
346
n
48
GLN
346
B
LEU
347
n
49
LEU
347
B
PHE
348
n
50
PHE
348
B
THR
349
n
51
THR
349
B
LEU
350
n
52
LEU
350
B
VAL
351
n
53
VAL
351
B
GLU
352
n
54
GLU
352
B
TRP
353
n
55
TRP
353
B
ALA
354
n
56
ALA
354
B
LYS
355
n
57
LYS
355
B
ARG
356
n
58
ARG
356
B
ILE
357
n
59
ILE
357
B
PRO
358
n
60
PRO
358
B
HIS
359
n
61
HIS
359
B
PHE
360
n
62
PHE
360
B
SER
361
n
63
SER
361
B
SER
362
n
64
SER
362
B
LEU
363
n
65
LEU
363
B
PRO
364
n
66
PRO
364
B
LEU
365
n
67
LEU
365
B
ASP
366
n
68
ASP
366
B
ASP
367
n
69
ASP
367
B
GLN
368
n
70
GLN
368
B
VAL
369
n
71
VAL
369
B
ILE
370
n
72
ILE
370
B
LEU
371
n
73
LEU
371
B
LEU
372
n
74
LEU
372
B
ARG
373
n
75
ARG
373
B
ALA
374
n
76
ALA
374
B
GLY
375
n
77
GLY
375
B
TRP
376
n
78
TRP
376
B
ASN
377
n
79
ASN
377
B
GLU
378
n
80
GLU
378
B
LEU
379
n
81
LEU
379
B
LEU
380
n
82
LEU
380
B
ILE
381
n
83
ILE
381
B
ALA
382
n
84
ALA
382
B
SER
383
n
85
SER
383
B
PHE
384
n
86
PHE
384
B
SER
385
n
87
SER
385
B
HIS
386
n
88
HIS
386
B
ARG
387
n
89
ARG
387
B
SER
388
n
90
SER
388
B
ILE
389
n
91
ILE
389
B
ASP
390
n
92
ASP
390
B
VAL
391
n
93
VAL
391
B
ARG
392
n
94
ARG
392
B
ASP
393
n
95
ASP
393
B
GLY
394
n
96
GLY
394
B
ILE
395
n
97
ILE
395
B
LEU
396
n
98
LEU
396
B
LEU
397
n
99
LEU
397
B
ALA
398
n
100
ALA
398
B
THR
399
n
101
THR
399
B
GLY
400
n
102
GLY
400
B
LEU
401
n
103
LEU
401
B
HIS
402
n
104
HIS
402
B
VAL
403
n
105
VAL
403
B
HIS
404
n
106
HIS
404
B
ARG
405
n
107
ARG
405
B
ASN
406
n
108
ASN
406
B
SER
407
n
109
SER
407
B
ALA
408
n
110
ALA
408
B
HIS
409
n
111
HIS
409
B
SER
410
n
112
SER
410
B
ALA
411
n
113
ALA
411
B
GLY
412
n
114
GLY
412
B
VAL
413
n
115
VAL
413
B
GLY
414
n
116
GLY
414
B
ALA
415
n
117
ALA
415
B
ILE
416
n
118
ILE
416
B
PHE
417
n
119
PHE
417
B
ASP
418
n
120
ASP
418
B
ARG
419
n
121
ARG
419
B
VAL
420
n
122
VAL
420
B
LEU
421
n
123
LEU
421
B
THR
422
n
124
THR
422
B
GLU
423
n
125
GLU
423
B
LEU
424
n
126
LEU
424
B
VAL
425
n
127
VAL
425
B
SER
426
n
128
SER
426
B
LYS
427
n
129
LYS
427
B
MET
428
n
130
MET
428
B
ARG
429
n
131
ARG
429
B
ASP
430
n
132
ASP
430
B
MET
431
n
133
MET
431
B
ARG
432
n
134
ARG
432
B
MET
433
n
135
MET
433
B
ASP
434
n
136
ASP
434
B
LYS
435
n
137
LYS
435
B
THR
436
n
138
THR
436
B
GLU
437
n
139
GLU
437
B
LEU
438
n
140
LEU
438
B
GLY
439
n
141
GLY
439
B
CYS
440
n
142
CYS
440
B
LEU
441
n
143
LEU
441
B
ARG
442
n
144
ARG
442
B
ALA
443
n
145
ALA
443
B
ILE
444
n
146
ILE
444
B
ILE
445
n
147
ILE
445
B
LEU
446
n
148
LEU
446
B
PHE
447
n
149
PHE
447
B
ASN
448
n
150
ASN
448
B
PRO
449
n
151
PRO
449
B
ASP
450
n
152
ASP
450
B
ALA
451
n
153
ALA
451
B
LYS
452
n
154
LYS
452
B
GLY
453
n
155
GLY
453
B
LEU
454
n
156
LEU
454
B
SER
455
n
157
SER
455
B
ASN
456
n
158
ASN
456
B
PRO
457
n
159
PRO
457
B
SER
458
n
160
SER
458
B
GLU
459
n
161
GLU
459
B
VAL
460
n
162
VAL
460
B
GLU
461
n
163
GLU
461
B
VAL
462
n
164
VAL
462
B
LEU
463
n
165
LEU
463
B
ARG
464
n
166
ARG
464
B
GLU
465
n
167
GLU
465
B
LYS
466
n
168
LYS
466
B
VAL
467
n
169
VAL
467
B
TYR
468
n
170
TYR
468
B
ALA
469
n
171
ALA
469
B
SER
470
n
172
SER
470
B
LEU
471
n
173
LEU
471
B
GLU
472
n
174
GLU
472
B
THR
473
n
175
THR
473
B
TYR
474
n
176
TYR
474
B
CYS
475
n
177
CYS
475
B
LYS
476
n
178
LYS
476
B
GLN
477
n
179
GLN
477
B
LYS
478
n
180
LYS
478
B
TYR
479
n
181
TYR
479
B
PRO
480
n
182
PRO
480
B
GLU
481
n
183
GLU
481
B
GLN
482
n
184
GLN
482
B
GLN
483
n
185
GLN
483
B
GLY
484
n
186
GLY
484
B
ARG
485
n
187
ARG
485
B
PHE
486
n
188
PHE
486
B
ALA
487
n
189
ALA
487
B
LYS
488
n
190
LYS
488
B
LEU
489
n
191
LEU
489
B
LEU
490
n
192
LEU
490
B
LEU
491
n
193
LEU
491
B
ARG
492
n
194
ARG
492
B
LEU
493
n
195
LEU
493
B
PRO
494
n
196
PRO
494
B
ALA
495
n
197
ALA
495
B
LEU
496
n
198
LEU
496
B
ARG
497
n
199
ARG
497
B
SER
498
n
200
SER
498
B
ILE
499
n
201
ILE
499
B
GLY
500
n
202
GLY
500
B
LEU
501
n
203
LEU
501
B
LYS
502
n
204
LYS
502
B
CYS
503
n
205
CYS
503
B
LEU
504
n
206
LEU
504
B
GLU
505
n
207
GLU
505
B
HIS
506
n
208
HIS
506
B
LEU
507
n
209
LEU
507
B
PHE
508
n
210
PHE
508
B
PHE
509
n
211
PHE
509
B
PHE
510
n
212
PHE
510
B
LYS
511
n
213
LYS
511
B
LEU
512
n
214
LEU
512
B
ILE
513
n
215
ILE
513
B
GLY
514
n
216
GLY
514
B
ASP
515
n
217
ASP
515
B
THR
516
n
218
THR
516
B
PRO
517
n
219
PRO
517
B
ILE
518
n
220
ILE
518
B
ASP
519
n
221
ASP
519
B
THR
520
n
222
THR
520
B
PHE
521
n
223
PHE
521
B
LEU
522
n
224
LEU
522
B
MET
299
n
1
MET
299
C
PRO
300
n
2
PRO
300
C
VAL
301
n
3
VAL
301
C
ASP
302
n
4
ASP
302
C
ARG
303
n
5
ARG
303
C
ILE
304
n
6
ILE
304
C
LEU
305
n
7
LEU
305
C
GLU
306
n
8
GLU
306
C
ALA
307
n
9
ALA
307
C
GLU
308
n
10
GLU
308
C
LEU
309
n
11
LEU
309
C
ALA
310
n
12
ALA
310
C
VAL
311
n
13
VAL
311
C
n
14
312
C
n
15
313
C
n
16
314
C
n
17
315
C
n
18
316
C
n
19
317
C
n
20
318
C
n
21
319
C
n
22
320
C
n
23
321
C
n
24
322
C
n
25
323
C
n
26
324
C
n
27
325
C
n
28
326
C
n
29
327
C
n
30
328
C
n
31
329
C
n
32
330
C
n
33
331
C
n
34
332
C
n
35
333
C
n
36
334
C
PRO
335
n
37
PRO
335
C
VAL
336
n
38
VAL
336
C
THR
337
n
39
THR
337
C
ASN
338
n
40
ASN
338
C
ILE
339
n
41
ILE
339
C
CYS
340
n
42
CYS
340
C
GLN
341
n
43
GLN
341
C
ALA
342
n
44
ALA
342
C
ALA
343
n
45
ALA
343
C
ASP
344
n
46
ASP
344
C
LYS
345
n
47
LYS
345
C
GLN
346
n
48
GLN
346
C
LEU
347
n
49
LEU
347
C
PHE
348
n
50
PHE
348
C
THR
349
n
51
THR
349
C
LEU
350
n
52
LEU
350
C
VAL
351
n
53
VAL
351
C
GLU
352
n
54
GLU
352
C
TRP
353
n
55
TRP
353
C
ALA
354
n
56
ALA
354
C
LYS
355
n
57
LYS
355
C
ARG
356
n
58
ARG
356
C
ILE
357
n
59
ILE
357
C
PRO
358
n
60
PRO
358
C
HIS
359
n
61
HIS
359
C
PHE
360
n
62
PHE
360
C
SER
361
n
63
SER
361
C
SER
362
n
64
SER
362
C
LEU
363
n
65
LEU
363
C
PRO
364
n
66
PRO
364
C
LEU
365
n
67
LEU
365
C
ASP
366
n
68
ASP
366
C
ASP
367
n
69
ASP
367
C
GLN
368
n
70
GLN
368
C
VAL
369
n
71
VAL
369
C
ILE
370
n
72
ILE
370
C
LEU
371
n
73
LEU
371
C
LEU
372
n
74
LEU
372
C
ARG
373
n
75
ARG
373
C
ALA
374
n
76
ALA
374
C
GLY
375
n
77
GLY
375
C
TRP
376
n
78
TRP
376
C
ASN
377
n
79
ASN
377
C
GLU
378
n
80
GLU
378
C
LEU
379
n
81
LEU
379
C
LEU
380
n
82
LEU
380
C
ILE
381
n
83
ILE
381
C
ALA
382
n
84
ALA
382
C
SER
383
n
85
SER
383
C
PHE
384
n
86
PHE
384
C
SER
385
n
87
SER
385
C
HIS
386
n
88
HIS
386
C
ARG
387
n
89
ARG
387
C
SER
388
n
90
SER
388
C
ILE
389
n
91
ILE
389
C
ASP
390
n
92
ASP
390
C
VAL
391
n
93
VAL
391
C
ARG
392
n
94
ARG
392
C
ASP
393
n
95
ASP
393
C
GLY
394
n
96
GLY
394
C
ILE
395
n
97
ILE
395
C
LEU
396
n
98
LEU
396
C
LEU
397
n
99
LEU
397
C
ALA
398
n
100
ALA
398
C
THR
399
n
101
THR
399
C
GLY
400
n
102
GLY
400
C
LEU
401
n
103
LEU
401
C
HIS
402
n
104
HIS
402
C
VAL
403
n
105
VAL
403
C
HIS
404
n
106
HIS
404
C
ARG
405
n
107
ARG
405
C
ASN
406
n
108
ASN
406
C
SER
407
n
109
SER
407
C
ALA
408
n
110
ALA
408
C
HIS
409
n
111
HIS
409
C
SER
410
n
112
SER
410
C
ALA
411
n
113
ALA
411
C
GLY
412
n
114
GLY
412
C
VAL
413
n
115
VAL
413
C
GLY
414
n
116
GLY
414
C
ALA
415
n
117
ALA
415
C
ILE
416
n
118
ILE
416
C
PHE
417
n
119
PHE
417
C
ASP
418
n
120
ASP
418
C
ARG
419
n
121
ARG
419
C
VAL
420
n
122
VAL
420
C
LEU
421
n
123
LEU
421
C
THR
422
n
124
THR
422
C
GLU
423
n
125
GLU
423
C
LEU
424
n
126
LEU
424
C
VAL
425
n
127
VAL
425
C
SER
426
n
128
SER
426
C
LYS
427
n
129
LYS
427
C
MET
428
n
130
MET
428
C
ARG
429
n
131
ARG
429
C
ASP
430
n
132
ASP
430
C
MET
431
n
133
MET
431
C
ARG
432
n
134
ARG
432
C
MET
433
n
135
MET
433
C
ASP
434
n
136
ASP
434
C
LYS
435
n
137
LYS
435
C
THR
436
n
138
THR
436
C
GLU
437
n
139
GLU
437
C
LEU
438
n
140
LEU
438
C
GLY
439
n
141
GLY
439
C
CYS
440
n
142
CYS
440
C
LEU
441
n
143
LEU
441
C
ARG
442
n
144
ARG
442
C
ALA
443
n
145
ALA
443
C
ILE
444
n
146
ILE
444
C
ILE
445
n
147
ILE
445
C
LEU
446
n
148
LEU
446
C
PHE
447
n
149
PHE
447
C
ASN
448
n
150
ASN
448
C
PRO
449
n
151
PRO
449
C
ASP
450
n
152
ASP
450
C
ALA
451
n
153
ALA
451
C
LYS
452
n
154
LYS
452
C
GLY
453
n
155
GLY
453
C
LEU
454
n
156
LEU
454
C
SER
455
n
157
SER
455
C
ASN
456
n
158
ASN
456
C
PRO
457
n
159
PRO
457
C
SER
458
n
160
SER
458
C
GLU
459
n
161
GLU
459
C
VAL
460
n
162
VAL
460
C
GLU
461
n
163
GLU
461
C
VAL
462
n
164
VAL
462
C
LEU
463
n
165
LEU
463
C
ARG
464
n
166
ARG
464
C
GLU
465
n
167
GLU
465
C
LYS
466
n
168
LYS
466
C
VAL
467
n
169
VAL
467
C
TYR
468
n
170
TYR
468
C
ALA
469
n
171
ALA
469
C
SER
470
n
172
SER
470
C
LEU
471
n
173
LEU
471
C
GLU
472
n
174
GLU
472
C
THR
473
n
175
THR
473
C
TYR
474
n
176
TYR
474
C
CYS
475
n
177
CYS
475
C
LYS
476
n
178
LYS
476
C
GLN
477
n
179
GLN
477
C
LYS
478
n
180
LYS
478
C
TYR
479
n
181
TYR
479
C
PRO
480
n
182
PRO
480
C
GLU
481
n
183
GLU
481
C
GLN
482
n
184
GLN
482
C
GLN
483
n
185
GLN
483
C
GLY
484
n
186
GLY
484
C
ARG
485
n
187
ARG
485
C
PHE
486
n
188
PHE
486
C
ALA
487
n
189
ALA
487
C
LYS
488
n
190
LYS
488
C
LEU
489
n
191
LEU
489
C
LEU
490
n
192
LEU
490
C
LEU
491
n
193
LEU
491
C
ARG
492
n
194
ARG
492
C
LEU
493
n
195
LEU
493
C
PRO
494
n
196
PRO
494
C
ALA
495
n
197
ALA
495
C
LEU
496
n
198
LEU
496
C
ARG
497
n
199
ARG
497
C
SER
498
n
200
SER
498
C
ILE
499
n
201
ILE
499
C
GLY
500
n
202
GLY
500
C
LEU
501
n
203
LEU
501
C
LYS
502
n
204
LYS
502
C
CYS
503
n
205
CYS
503
C
LEU
504
n
206
LEU
504
C
GLU
505
n
207
GLU
505
C
HIS
506
n
208
HIS
506
C
LEU
507
n
209
LEU
507
C
PHE
508
n
210
PHE
508
C
PHE
509
n
211
PHE
509
C
PHE
510
n
212
PHE
510
C
LYS
511
n
213
LYS
511
C
LEU
512
n
214
LEU
512
C
ILE
513
n
215
ILE
513
C
GLY
514
n
216
GLY
514
C
ASP
515
n
217
ASP
515
C
THR
516
n
218
THR
516
C
PRO
517
n
219
PRO
517
C
ILE
518
n
220
ILE
518
C
ASP
519
n
221
ASP
519
C
THR
520
n
222
THR
520
C
PHE
521
n
223
PHE
521
C
LEU
522
n
224
LEU
522
C
MET
299
n
1
MET
299
D
PRO
300
n
2
PRO
300
D
VAL
301
n
3
VAL
301
D
ASP
302
n
4
ASP
302
D
ARG
303
n
5
ARG
303
D
ILE
304
n
6
ILE
304
D
LEU
305
n
7
LEU
305
D
GLU
306
n
8
GLU
306
D
ALA
307
n
9
ALA
307
D
GLU
308
n
10
GLU
308
D
LEU
309
n
11
LEU
309
D
ALA
310
n
12
ALA
310
D
VAL
311
n
13
VAL
311
D
n
14
312
D
n
15
313
D
n
16
314
D
n
17
315
D
n
18
316
D
n
19
317
D
n
20
318
D
n
21
319
D
n
22
320
D
n
23
321
D
n
24
322
D
n
25
323
D
n
26
324
D
n
27
325
D
n
28
326
D
n
29
327
D
n
30
328
D
n
31
329
D
n
32
330
D
n
33
331
D
n
34
332
D
n
35
333
D
n
36
334
D
PRO
335
n
37
PRO
335
D
VAL
336
n
38
VAL
336
D
THR
337
n
39
THR
337
D
ASN
338
n
40
ASN
338
D
ILE
339
n
41
ILE
339
D
CYS
340
n
42
CYS
340
D
GLN
341
n
43
GLN
341
D
ALA
342
n
44
ALA
342
D
ALA
343
n
45
ALA
343
D
ASP
344
n
46
ASP
344
D
LYS
345
n
47
LYS
345
D
GLN
346
n
48
GLN
346
D
LEU
347
n
49
LEU
347
D
PHE
348
n
50
PHE
348
D
THR
349
n
51
THR
349
D
LEU
350
n
52
LEU
350
D
VAL
351
n
53
VAL
351
D
GLU
352
n
54
GLU
352
D
TRP
353
n
55
TRP
353
D
ALA
354
n
56
ALA
354
D
LYS
355
n
57
LYS
355
D
ARG
356
n
58
ARG
356
D
ILE
357
n
59
ILE
357
D
PRO
358
n
60
PRO
358
D
HIS
359
n
61
HIS
359
D
PHE
360
n
62
PHE
360
D
SER
361
n
63
SER
361
D
SER
362
n
64
SER
362
D
LEU
363
n
65
LEU
363
D
PRO
364
n
66
PRO
364
D
LEU
365
n
67
LEU
365
D
ASP
366
n
68
ASP
366
D
ASP
367
n
69
ASP
367
D
GLN
368
n
70
GLN
368
D
VAL
369
n
71
VAL
369
D
ILE
370
n
72
ILE
370
D
LEU
371
n
73
LEU
371
D
LEU
372
n
74
LEU
372
D
ARG
373
n
75
ARG
373
D
ALA
374
n
76
ALA
374
D
GLY
375
n
77
GLY
375
D
TRP
376
n
78
TRP
376
D
ASN
377
n
79
ASN
377
D
GLU
378
n
80
GLU
378
D
LEU
379
n
81
LEU
379
D
LEU
380
n
82
LEU
380
D
ILE
381
n
83
ILE
381
D
ALA
382
n
84
ALA
382
D
SER
383
n
85
SER
383
D
PHE
384
n
86
PHE
384
D
SER
385
n
87
SER
385
D
HIS
386
n
88
HIS
386
D
ARG
387
n
89
ARG
387
D
SER
388
n
90
SER
388
D
ILE
389
n
91
ILE
389
D
ASP
390
n
92
ASP
390
D
VAL
391
n
93
VAL
391
D
ARG
392
n
94
ARG
392
D
ASP
393
n
95
ASP
393
D
GLY
394
n
96
GLY
394
D
ILE
395
n
97
ILE
395
D
LEU
396
n
98
LEU
396
D
LEU
397
n
99
LEU
397
D
ALA
398
n
100
ALA
398
D
THR
399
n
101
THR
399
D
GLY
400
n
102
GLY
400
D
LEU
401
n
103
LEU
401
D
HIS
402
n
104
HIS
402
D
VAL
403
n
105
VAL
403
D
HIS
404
n
106
HIS
404
D
ARG
405
n
107
ARG
405
D
ASN
406
n
108
ASN
406
D
SER
407
n
109
SER
407
D
ALA
408
n
110
ALA
408
D
HIS
409
n
111
HIS
409
D
SER
410
n
112
SER
410
D
ALA
411
n
113
ALA
411
D
GLY
412
n
114
GLY
412
D
VAL
413
n
115
VAL
413
D
GLY
414
n
116
GLY
414
D
ALA
415
n
117
ALA
415
D
ILE
416
n
118
ILE
416
D
PHE
417
n
119
PHE
417
D
ASP
418
n
120
ASP
418
D
ARG
419
n
121
ARG
419
D
VAL
420
n
122
VAL
420
D
LEU
421
n
123
LEU
421
D
THR
422
n
124
THR
422
D
GLU
423
n
125
GLU
423
D
LEU
424
n
126
LEU
424
D
VAL
425
n
127
VAL
425
D
SER
426
n
128
SER
426
D
LYS
427
n
129
LYS
427
D
MET
428
n
130
MET
428
D
ARG
429
n
131
ARG
429
D
ASP
430
n
132
ASP
430
D
MET
431
n
133
MET
431
D
ARG
432
n
134
ARG
432
D
MET
433
n
135
MET
433
D
ASP
434
n
136
ASP
434
D
LYS
435
n
137
LYS
435
D
THR
436
n
138
THR
436
D
GLU
437
n
139
GLU
437
D
LEU
438
n
140
LEU
438
D
GLY
439
n
141
GLY
439
D
CYS
440
n
142
CYS
440
D
LEU
441
n
143
LEU
441
D
ARG
442
n
144
ARG
442
D
ALA
443
n
145
ALA
443
D
ILE
444
n
146
ILE
444
D
ILE
445
n
147
ILE
445
D
LEU
446
n
148
LEU
446
D
PHE
447
n
149
PHE
447
D
ASN
448
n
150
ASN
448
D
PRO
449
n
151
PRO
449
D
ASP
450
n
152
ASP
450
D
ALA
451
n
153
ALA
451
D
LYS
452
n
154
LYS
452
D
GLY
453
n
155
GLY
453
D
LEU
454
n
156
LEU
454
D
SER
455
n
157
SER
455
D
ASN
456
n
158
ASN
456
D
PRO
457
n
159
PRO
457
D
SER
458
n
160
SER
458
D
GLU
459
n
161
GLU
459
D
VAL
460
n
162
VAL
460
D
GLU
461
n
163
GLU
461
D
VAL
462
n
164
VAL
462
D
LEU
463
n
165
LEU
463
D
ARG
464
n
166
ARG
464
D
GLU
465
n
167
GLU
465
D
LYS
466
n
168
LYS
466
D
VAL
467
n
169
VAL
467
D
TYR
468
n
170
TYR
468
D
ALA
469
n
171
ALA
469
D
SER
470
n
172
SER
470
D
LEU
471
n
173
LEU
471
D
GLU
472
n
174
GLU
472
D
THR
473
n
175
THR
473
D
TYR
474
n
176
TYR
474
D
CYS
475
n
177
CYS
475
D
LYS
476
n
178
LYS
476
D
GLN
477
n
179
GLN
477
D
LYS
478
n
180
LYS
478
D
TYR
479
n
181
TYR
479
D
PRO
480
n
182
PRO
480
D
GLU
481
n
183
GLU
481
D
GLN
482
n
184
GLN
482
D
GLN
483
n
185
GLN
483
D
GLY
484
n
186
GLY
484
D
ARG
485
n
187
ARG
485
D
PHE
486
n
188
PHE
486
D
ALA
487
n
189
ALA
487
D
LYS
488
n
190
LYS
488
D
LEU
489
n
191
LEU
489
D
LEU
490
n
192
LEU
490
D
LEU
491
n
193
LEU
491
D
ARG
492
n
194
ARG
492
D
LEU
493
n
195
LEU
493
D
PRO
494
n
196
PRO
494
D
ALA
495
n
197
ALA
495
D
LEU
496
n
198
LEU
496
D
ARG
497
n
199
ARG
497
D
SER
498
n
200
SER
498
D
ILE
499
n
201
ILE
499
D
GLY
500
n
202
GLY
500
D
LEU
501
n
203
LEU
501
D
LYS
502
n
204
LYS
502
D
CYS
503
n
205
CYS
503
D
LEU
504
n
206
LEU
504
D
GLU
505
n
207
GLU
505
D
HIS
506
n
208
HIS
506
D
LEU
507
n
209
LEU
507
D
PHE
508
n
210
PHE
508
D
PHE
509
n
211
PHE
509
D
PHE
510
n
212
PHE
510
D
LYS
511
n
213
LYS
511
D
LEU
512
n
214
LEU
512
D
ILE
513
n
215
ILE
513
D
GLY
514
n
216
GLY
514
D
ASP
515
n
217
ASP
515
D
THR
516
n
218
THR
516
D
PRO
517
n
219
PRO
517
D
ILE
518
n
220
ILE
518
D
ASP
519
n
221
ASP
519
D
THR
520
n
222
THR
520
D
PHE
521
n
223
PHE
521
D
LEU
522
n
224
LEU
522
D
author_and_software_defined_assembly
PQS
8
octameric
A
CL
3
G
CL
CL
1_555
A
NI
2
F
NI
NI
1_555
A
HIS
404
A
NE2
HIS
106
1_555
94.0
B
CL
3
J
CL
CL
1_555
B
NI
2
I
NI
NI
1_555
B
HIS
402
B
ND1
HIS
104
1_555
116.5
B
CL
3
J
CL
CL
1_555
B
NI
2
I
NI
NI
1_555
B
HIS
404
B
NE2
HIS
106
1_555
86.3
B
HIS
402
B
ND1
HIS
104
1_555
B
NI
2
I
NI
NI
1_555
B
HIS
404
B
NE2
HIS
106
1_555
127.5
C
HIS
402
C
ND1
HIS
104
1_555
C
NI
2
L
NI
NI
1_555
C
HIS
404
C
NE2
HIS
106
1_555
124.7
D
HIS
402
D
ND1
HIS
104
1_555
D
NI
2
N
NI
NI
1_555
D
HIS
404
D
NE2
HIS
106
1_555
126.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_658
-x+1,y,-z+3
crystal symmetry operation
-38.5164927123
0.0000000000
254.3327180719
A
N
ILE
395
A
N
ILE
97
A
O
VAL
403
A
O
VAL
105
B
N
ILE
395
B
N
ILE
97
B
O
VAL
403
B
O
VAL
105
C
N
ILE
395
C
N
ILE
97
C
O
VAL
403
C
O
VAL
105
D
N
ILE
395
D
N
ILE
97
D
O
VAL
403
D
O
VAL
105
1
A
CB
LYS
355
A
CB
LYS
57
1
Y
1
A
CG
LYS
355
A
CG
LYS
57
1
Y
1
A
CD
LYS
355
A
CD
LYS
57
1
Y
1
A
CE
LYS
355
A
CE
LYS
57
1
Y
1
A
NZ
LYS
355
A
NZ
LYS
57
1
Y
1
A
CG
GLU
459
A
CG
GLU
161
1
Y
1
A
CD
GLU
459
A
CD
GLU
161
1
Y
1
A
OE1
GLU
459
A
OE1
GLU
161
1
Y
1
A
OE2
GLU
459
A
OE2
GLU
161
1
Y
1
A
CB
GLN
483
A
CB
GLN
185
1
Y
1
A
CG
GLN
483
A
CG
GLN
185
1
Y
1
A
CD
GLN
483
A
CD
GLN
185
1
Y
1
A
OE1
GLN
483
A
OE1
GLN
185
1
Y
1
A
NE2
GLN
483
A
NE2
GLN
185
1
Y
1
A
CG
LYS
511
A
CG
LYS
213
1
Y
1
A
CD
LYS
511
A
CD
LYS
213
1
Y
1
A
CE
LYS
511
A
CE
LYS
213
1
Y
1
A
NZ
LYS
511
A
NZ
LYS
213
1
Y
1
A
CG1
ILE
518
A
CG1
ILE
220
1
Y
1
A
CG2
ILE
518
A
CG2
ILE
220
1
Y
1
A
CD1
ILE
518
A
CD1
ILE
220
1
Y
1
A
CG
ASP
519
A
CG
ASP
221
1
Y
1
A
OD1
ASP
519
A
OD1
ASP
221
1
Y
1
A
OD2
ASP
519
A
OD2
ASP
221
1
Y
1
A
OG1
THR
520
A
OG1
THR
222
1
Y
1
A
CG2
THR
520
A
CG2
THR
222
1
Y
1
A
CG
PHE
521
A
CG
PHE
223
1
Y
1
A
CD1
PHE
521
A
CD1
PHE
223
1
Y
1
A
CD2
PHE
521
A
CD2
PHE
223
1
Y
1
A
CE1
PHE
521
A
CE1
PHE
223
1
Y
1
A
CE2
PHE
521
A
CE2
PHE
223
1
Y
1
A
CZ
PHE
521
A
CZ
PHE
223
1
Y
1
A
CG
LEU
522
A
CG
LEU
224
1
Y
1
A
CD1
LEU
522
A
CD1
LEU
224
1
Y
1
A
CD2
LEU
522
A
CD2
LEU
224
1
Y
1
B
CB
LYS
355
B
CB
LYS
57
1
Y
1
B
CG
LYS
355
B
CG
LYS
57
1
Y
1
B
CD
LYS
355
B
CD
LYS
57
1
Y
1
B
CE
LYS
355
B
CE
LYS
57
1
Y
1
B
NZ
LYS
355
B
NZ
LYS
57
1
Y
1
B
CG
GLU
459
B
CG
GLU
161
1
Y
1
B
CD
GLU
459
B
CD
GLU
161
1
Y
1
B
OE1
GLU
459
B
OE1
GLU
161
1
Y
1
B
OE2
GLU
459
B
OE2
GLU
161
1
Y
1
B
CB
GLN
477
B
CB
GLN
179
1
Y
1
B
CG
GLN
477
B
CG
GLN
179
1
Y
1
B
CD
GLN
477
B
CD
GLN
179
1
Y
1
B
OE1
GLN
477
B
OE1
GLN
179
1
Y
1
B
NE2
GLN
477
B
NE2
GLN
179
1
Y
1
B
CG
GLU
481
B
CG
GLU
183
1
Y
1
B
CD
GLU
481
B
CD
GLU
183
1
Y
1
B
OE1
GLU
481
B
OE1
GLU
183
1
Y
1
B
OE2
GLU
481
B
OE2
GLU
183
1
Y
1
B
CG
GLN
483
B
CG
GLN
185
1
Y
1
B
CD
GLN
483
B
CD
GLN
185
1
Y
1
B
OE1
GLN
483
B
OE1
GLN
185
1
Y
1
B
NE2
GLN
483
B
NE2
GLN
185
1
Y
1
B
CB
LYS
511
B
CB
LYS
213
1
Y
1
B
CG
LYS
511
B
CG
LYS
213
1
Y
1
B
CD
LYS
511
B
CD
LYS
213
1
Y
1
B
CE
LYS
511
B
CE
LYS
213
1
Y
1
B
NZ
LYS
511
B
NZ
LYS
213
1
Y
1
B
CB
ILE
518
B
CB
ILE
220
1
Y
1
B
CG1
ILE
518
B
CG1
ILE
220
1
Y
1
B
CG2
ILE
518
B
CG2
ILE
220
1
Y
1
B
CD1
ILE
518
B
CD1
ILE
220
1
Y
1
B
OG1
THR
520
B
OG1
THR
222
1
Y
1
B
CG2
THR
520
B
CG2
THR
222
1
Y
1
B
CG
PHE
521
B
CG
PHE
223
1
Y
1
B
CD1
PHE
521
B
CD1
PHE
223
1
Y
1
B
CD2
PHE
521
B
CD2
PHE
223
1
Y
1
B
CE1
PHE
521
B
CE1
PHE
223
1
Y
1
B
CE2
PHE
521
B
CE2
PHE
223
1
Y
1
B
CZ
PHE
521
B
CZ
PHE
223
1
Y
1
B
CG
LEU
522
B
CG
LEU
224
1
Y
1
B
CD1
LEU
522
B
CD1
LEU
224
1
Y
1
B
CD2
LEU
522
B
CD2
LEU
224
1
Y
1
C
CG
ASP
302
C
CG
ASP
4
1
Y
1
C
OD1
ASP
302
C
OD1
ASP
4
1
Y
1
C
OD2
ASP
302
C
OD2
ASP
4
1
Y
1
C
CG
ARG
303
C
CG
ARG
5
1
Y
1
C
CD
ARG
303
C
CD
ARG
5
1
Y
1
C
NE
ARG
303
C
NE
ARG
5
1
Y
1
C
CZ
ARG
303
C
CZ
ARG
5
1
Y
1
C
NH1
ARG
303
C
NH1
ARG
5
1
Y
1
C
NH2
ARG
303
C
NH2
ARG
5
1
Y
1
C
CG
GLU
306
C
CG
GLU
8
1
Y
1
C
CD
GLU
306
C
CD
GLU
8
1
Y
1
C
OE1
GLU
306
C
OE1
GLU
8
1
Y
1
C
OE2
GLU
306
C
OE2
GLU
8
1
Y
1
C
CB
ARG
392
C
CB
ARG
94
1
Y
1
C
CG
ARG
392
C
CG
ARG
94
1
Y
1
C
CD
ARG
392
C
CD
ARG
94
1
Y
1
C
NE
ARG
392
C
NE
ARG
94
1
Y
1
C
CZ
ARG
392
C
CZ
ARG
94
1
Y
1
C
NH1
ARG
392
C
NH1
ARG
94
1
Y
1
C
NH2
ARG
392
C
NH2
ARG
94
1
Y
1
C
CB
GLU
481
C
CB
GLU
183
1
Y
1
C
CG
GLU
481
C
CG
GLU
183
1
Y
1
C
CD
GLU
481
C
CD
GLU
183
1
Y
1
C
OE1
GLU
481
C
OE1
GLU
183
1
Y
1
C
OE2
GLU
481
C
OE2
GLU
183
1
Y
1
C
CB
GLN
483
C
CB
GLN
185
1
Y
1
C
CG
GLN
483
C
CG
GLN
185
1
Y
1
C
CD
GLN
483
C
CD
GLN
185
1
Y
1
C
OE1
GLN
483
C
OE1
GLN
185
1
Y
1
C
NE2
GLN
483
C
NE2
GLN
185
1
Y
1
C
CB
LYS
511
C
CB
LYS
213
1
Y
1
C
CG
LYS
511
C
CG
LYS
213
1
Y
1
C
CD
LYS
511
C
CD
LYS
213
1
Y
1
C
CE
LYS
511
C
CE
LYS
213
1
Y
1
C
NZ
LYS
511
C
NZ
LYS
213
1
Y
1
C
OG1
THR
520
C
OG1
THR
222
1
Y
1
C
CG2
THR
520
C
CG2
THR
222
1
Y
1
C
CG
LEU
522
C
CG
LEU
224
1
Y
1
C
CD1
LEU
522
C
CD1
LEU
224
1
Y
1
C
CD2
LEU
522
C
CD2
LEU
224
1
Y
1
D
CB
ASP
302
D
CB
ASP
4
1
Y
1
D
CG
ASP
302
D
CG
ASP
4
1
Y
1
D
OD1
ASP
302
D
OD1
ASP
4
1
Y
1
D
OD2
ASP
302
D
OD2
ASP
4
1
Y
1
D
CG
LEU
305
D
CG
LEU
7
1
Y
1
D
CD1
LEU
305
D
CD1
LEU
7
1
Y
1
D
CD2
LEU
305
D
CD2
LEU
7
1
Y
1
D
CB
ARG
392
D
CB
ARG
94
1
Y
1
D
CG
ARG
392
D
CG
ARG
94
1
Y
1
D
CD
ARG
392
D
CD
ARG
94
1
Y
1
D
NE
ARG
392
D
NE
ARG
94
1
Y
1
D
CZ
ARG
392
D
CZ
ARG
94
1
Y
1
D
NH1
ARG
392
D
NH1
ARG
94
1
Y
1
D
NH2
ARG
392
D
NH2
ARG
94
1
Y
1
D
CG
LYS
452
D
CG
LYS
154
1
Y
1
D
CD
LYS
452
D
CD
LYS
154
1
Y
1
D
CE
LYS
452
D
CE
LYS
154
1
Y
1
D
NZ
LYS
452
D
NZ
LYS
154
1
Y
1
D
CB
GLN
477
D
CB
GLN
179
1
Y
1
D
CG
GLN
477
D
CG
GLN
179
1
Y
1
D
CD
GLN
477
D
CD
GLN
179
1
Y
1
D
OE1
GLN
477
D
OE1
GLN
179
1
Y
1
D
NE2
GLN
477
D
NE2
GLN
179
1
Y
1
D
CB
LYS
478
D
CB
LYS
180
1
Y
1
D
CG
LYS
478
D
CG
LYS
180
1
Y
1
D
CD
LYS
478
D
CD
LYS
180
1
Y
1
D
CE
LYS
478
D
CE
LYS
180
1
Y
1
D
NZ
LYS
478
D
NZ
LYS
180
1
Y
1
D
CB
GLU
481
D
CB
GLU
183
1
Y
1
D
CG
GLU
481
D
CG
GLU
183
1
Y
1
D
CD
GLU
481
D
CD
GLU
183
1
Y
1
D
OE1
GLU
481
D
OE1
GLU
183
1
Y
1
D
OE2
GLU
481
D
OE2
GLU
183
1
Y
1
D
CB
GLN
483
D
CB
GLN
185
1
Y
1
D
CG
GLN
483
D
CG
GLN
185
1
Y
1
D
CD
GLN
483
D
CD
GLN
185
1
Y
1
D
OE1
GLN
483
D
OE1
GLN
185
1
Y
1
D
NE2
GLN
483
D
NE2
GLN
185
1
Y
1
D
OG1
THR
520
D
OG1
THR
222
1
Y
1
D
CG2
THR
520
D
CG2
THR
222
1
Y
1
D
CG
LEU
522
D
CG
LEU
224
1
Y
1
D
CD1
LEU
522
D
CD1
LEU
224
1
Y
1
D
CD2
LEU
522
D
CD2
LEU
224
1
Y
1
A
GLU
312
A
GLU
14
1
Y
1
A
GLN
313
A
GLN
15
1
Y
1
A
LYS
314
A
LYS
16
1
Y
1
A
SER
315
A
SER
17
1
Y
1
A
ASP
316
A
ASP
18
1
Y
1
A
GLN
317
A
GLN
19
1
Y
1
A
GLY
318
A
GLY
20
1
Y
1
A
VAL
319
A
VAL
21
1
Y
1
A
GLU
320
A
GLU
22
1
Y
1
A
GLY
321
A
GLY
23
1
Y
1
A
PRO
322
A
PRO
24
1
Y
1
A
GLY
323
A
GLY
25
1
Y
1
A
GLY
324
A
GLY
26
1
Y
1
A
THR
325
A
THR
27
1
Y
1
A
GLY
326
A
GLY
28
1
Y
1
A
GLY
327
A
GLY
29
1
Y
1
A
SER
328
A
SER
30
1
Y
1
A
GLY
329
A
GLY
31
1
Y
1
A
SER
330
A
SER
32
1
Y
1
A
SER
331
A
SER
33
1
Y
1
A
PRO
332
A
PRO
34
1
Y
1
A
ASN
333
A
ASN
35
1
Y
1
A
ASP
334
A
ASP
36
1
Y
1
B
GLU
312
B
GLU
14
1
Y
1
B
GLN
313
B
GLN
15
1
Y
1
B
LYS
314
B
LYS
16
1
Y
1
B
SER
315
B
SER
17
1
Y
1
B
ASP
316
B
ASP
18
1
Y
1
B
GLN
317
B
GLN
19
1
Y
1
B
GLY
318
B
GLY
20
1
Y
1
B
VAL
319
B
VAL
21
1
Y
1
B
GLU
320
B
GLU
22
1
Y
1
B
GLY
321
B
GLY
23
1
Y
1
B
PRO
322
B
PRO
24
1
Y
1
B
GLY
323
B
GLY
25
1
Y
1
B
GLY
324
B
GLY
26
1
Y
1
B
THR
325
B
THR
27
1
Y
1
B
GLY
326
B
GLY
28
1
Y
1
B
GLY
327
B
GLY
29
1
Y
1
B
SER
328
B
SER
30
1
Y
1
B
GLY
329
B
GLY
31
1
Y
1
B
SER
330
B
SER
32
1
Y
1
B
SER
331
B
SER
33
1
Y
1
B
PRO
332
B
PRO
34
1
Y
1
B
ASN
333
B
ASN
35
1
Y
1
B
ASP
334
B
ASP
36
1
Y
1
C
GLU
312
C
GLU
14
1
Y
1
C
GLN
313
C
GLN
15
1
Y
1
C
LYS
314
C
LYS
16
1
Y
1
C
SER
315
C
SER
17
1
Y
1
C
ASP
316
C
ASP
18
1
Y
1
C
GLN
317
C
GLN
19
1
Y
1
C
GLY
318
C
GLY
20
1
Y
1
C
VAL
319
C
VAL
21
1
Y
1
C
GLU
320
C
GLU
22
1
Y
1
C
GLY
321
C
GLY
23
1
Y
1
C
PRO
322
C
PRO
24
1
Y
1
C
GLY
323
C
GLY
25
1
Y
1
C
GLY
324
C
GLY
26
1
Y
1
C
THR
325
C
THR
27
1
Y
1
C
GLY
326
C
GLY
28
1
Y
1
C
GLY
327
C
GLY
29
1
Y
1
C
SER
328
C
SER
30
1
Y
1
C
GLY
329
C
GLY
31
1
Y
1
C
SER
330
C
SER
32
1
Y
1
C
SER
331
C
SER
33
1
Y
1
C
PRO
332
C
PRO
34
1
Y
1
C
ASN
333
C
ASN
35
1
Y
1
C
ASP
334
C
ASP
36
1
Y
1
D
GLU
312
D
GLU
14
1
Y
1
D
GLN
313
D
GLN
15
1
Y
1
D
LYS
314
D
LYS
16
1
Y
1
D
SER
315
D
SER
17
1
Y
1
D
ASP
316
D
ASP
18
1
Y
1
D
GLN
317
D
GLN
19
1
Y
1
D
GLY
318
D
GLY
20
1
Y
1
D
VAL
319
D
VAL
21
1
Y
1
D
GLU
320
D
GLU
22
1
Y
1
D
GLY
321
D
GLY
23
1
Y
1
D
PRO
322
D
PRO
24
1
Y
1
D
GLY
323
D
GLY
25
1
Y
1
D
GLY
324
D
GLY
26
1
Y
1
D
THR
325
D
THR
27
1
Y
1
D
GLY
326
D
GLY
28
1
Y
1
D
GLY
327
D
GLY
29
1
Y
1
D
SER
328
D
SER
30
1
Y
1
D
GLY
329
D
GLY
31
1
Y
1
D
SER
330
D
SER
32
1
Y
1
D
SER
331
D
SER
33
1
Y
1
D
PRO
332
D
PRO
34
1
Y
1
D
ASN
333
D
ASN
35
1
Y
1
D
ASP
334
D
ASP
36
1
Y
1
A
PRO
358
-12.38
-71.08
1
A
ASP
393
34.38
59.07
1
A
ARG
405
-35.84
-36.47
1
A
LEU
491
-68.39
4.43
1
A
ASP
515
45.52
29.56
1
A
PHE
521
-45.78
-87.84
1
B
PRO
358
-11.47
-72.15
1
B
ASP
393
35.44
58.25
1
B
ARG
405
-34.37
-37.24
1
B
LEU
491
-69.30
3.82
1
C
PRO
358
-10.89
-73.33
1
C
ASP
393
34.56
57.62
1
C
ARG
405
-34.95
-36.17
1
D
PRO
358
-12.07
-72.15
1
D
ASP
393
34.50
58.29
1
D
ARG
405
-34.66
-36.05
1
D
LEU
491
-69.75
2.94
1
D
ASP
515
47.48
27.98
PROTEIN_REP.PARAM
PROTEIN.TOP
ION.PARAM
LG2.TOP
WATER_REP.PARAM
LG2.PAR
50.5
2.68
0.00
19.66
-13.83
0.00
11.15
0.306
0.006
0.273
0.273
2.70
38.14
2929
29621
9.9
97.3
RANDOM
2064073.76
1
RESTRAINED
THROUGHOUT
2.0
MOLECULAR REPLACEMENT
PDB ENTRY 1LBD
FLAT MODEL
52.2394
0.35528
0.52
0.43
6.00
0.54
0.42
2.70
38.14
4
6338
114
0
6220
0.009
1.4
19.2
1.08
1.17
1.50
1.97
2.00
1.71
2.00
2.67
2.50
0.406
0.018
0.354
2.87
483
4461
6
9.8
98.0
55.3
2.700
38.000
1H9U
29713
2.000
0.09800
1
5.1000
2.900
98.0
refinement
CNS
1.0
data reduction
MOSFLM
data scaling
SCALA
phasing
CNS
The structure of the human retinoid-X-receptor beta ligand binding domain in complex with the specific synthetic agonist LG100268
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
2
N
N
3
N
N
4
N
N
2
N
N
3
N
N
2
N
N
3
N
N
5
N
N
5
N
N
5
N
N
5
N
N
CRYSTAL. THE RETINOID X RECEPTOR IS ACTIVE
AS DIMERIC
A
PRO
300
A
PRO
2
HELX_P
A
ALA
310
A
ALA
12
1
1
11
A
PRO
335
A
PRO
37
HELX_P
A
PHE
348
A
PHE
50
1
2
14
A
THR
349
A
THR
51
HELX_P
A
ARG
356
A
ARG
58
1
3
8
A
HIS
359
A
HIS
61
HELX_P
A
LEU
363
A
LEU
65
5
4
5
A
PRO
364
A
PRO
66
HELX_P
A
SER
388
A
SER
90
1
5
25
A
ARG
405
A
ARG
107
HELX_P
A
GLY
412
A
GLY
114
1
6
8
A
VAL
413
A
VAL
115
HELX_P
A
LEU
424
A
LEU
126
1
7
12
A
LEU
424
A
LEU
126
HELX_P
A
ARG
432
A
ARG
134
1
8
9
A
ASP
434
A
ASP
136
HELX_P
A
PHE
447
A
PHE
149
1
9
14
A
ASN
456
A
ASN
158
HELX_P
A
TYR
479
A
TYR
181
1
10
24
A
GLY
484
A
GLY
186
HELX_P
A
LEU
491
A
LEU
193
1
11
8
A
ARG
492
A
ARG
194
HELX_P
A
GLY
514
A
GLY
216
1
12
23
A
THR
516
A
THR
218
HELX_P
A
LEU
522
A
LEU
224
1
13
7
B
PRO
300
B
PRO
2
HELX_P
B
ALA
310
B
ALA
12
1
14
11
B
PRO
335
B
PRO
37
HELX_P
B
PHE
348
B
PHE
50
1
15
14
B
THR
349
B
THR
51
HELX_P
B
ARG
356
B
ARG
58
1
16
8
B
HIS
359
B
HIS
61
HELX_P
B
LEU
363
B
LEU
65
5
17
5
B
PRO
364
B
PRO
66
HELX_P
B
SER
388
B
SER
90
1
18
25
B
ARG
405
B
ARG
107
HELX_P
B
GLY
412
B
GLY
114
1
19
8
B
VAL
413
B
VAL
115
HELX_P
B
LEU
424
B
LEU
126
1
20
12
B
LEU
424
B
LEU
126
HELX_P
B
ARG
432
B
ARG
134
1
21
9
B
ASP
434
B
ASP
136
HELX_P
B
PHE
447
B
PHE
149
1
22
14
B
ASN
456
B
ASN
158
HELX_P
B
TYR
479
B
TYR
181
1
23
24
B
GLY
484
B
GLY
186
HELX_P
B
LEU
491
B
LEU
193
1
24
8
B
ARG
492
B
ARG
194
HELX_P
B
GLY
514
B
GLY
216
1
25
23
B
THR
516
B
THR
218
HELX_P
B
LEU
522
B
LEU
224
1
26
7
C
PRO
300
C
PRO
2
HELX_P
C
ALA
310
C
ALA
12
1
27
11
C
PRO
335
C
PRO
37
HELX_P
C
PHE
348
C
PHE
50
1
28
14
C
THR
349
C
THR
51
HELX_P
C
ARG
356
C
ARG
58
1
29
8
C
HIS
359
C
HIS
61
HELX_P
C
LEU
363
C
LEU
65
5
30
5
C
PRO
364
C
PRO
66
HELX_P
C
SER
388
C
SER
90
1
31
25
C
ARG
405
C
ARG
107
HELX_P
C
GLY
412
C
GLY
114
1
32
8
C
VAL
413
C
VAL
115
HELX_P
C
LEU
424
C
LEU
126
1
33
12
C
LEU
424
C
LEU
126
HELX_P
C
ARG
432
C
ARG
134
1
34
9
C
ASP
434
C
ASP
136
HELX_P
C
PHE
447
C
PHE
149
1
35
14
C
ASN
456
C
ASN
158
HELX_P
C
TYR
479
C
TYR
181
1
36
24
C
GLY
484
C
GLY
186
HELX_P
C
LEU
491
C
LEU
193
1
37
8
C
ARG
492
C
ARG
194
HELX_P
C
GLY
514
C
GLY
216
1
38
23
C
THR
516
C
THR
218
HELX_P
C
LEU
522
C
LEU
224
1
39
7
D
PRO
300
D
PRO
2
HELX_P
D
ALA
310
D
ALA
12
1
40
11
D
PRO
335
D
PRO
37
HELX_P
D
PHE
348
D
PHE
50
1
41
14
D
THR
349
D
THR
51
HELX_P
D
ARG
356
D
ARG
58
1
42
8
D
HIS
359
D
HIS
61
HELX_P
D
LEU
363
D
LEU
65
5
43
5
D
PRO
364
D
PRO
66
HELX_P
D
SER
388
D
SER
90
1
44
25
D
ARG
405
D
ARG
107
HELX_P
D
ALA
411
D
ALA
113
1
45
7
D
VAL
413
D
VAL
115
HELX_P
D
LEU
424
D
LEU
126
1
46
12
D
LEU
424
D
LEU
126
HELX_P
D
ARG
432
D
ARG
134
1
47
9
D
ASP
434
D
ASP
136
HELX_P
D
PHE
447
D
PHE
149
1
48
14
D
ASN
456
D
ASN
158
HELX_P
D
TYR
479
D
TYR
181
1
49
24
D
GLY
484
D
GLY
186
HELX_P
D
LEU
491
D
LEU
193
1
50
8
D
ARG
492
D
ARG
194
HELX_P
D
GLY
514
D
GLY
216
1
51
23
D
THR
516
D
THR
218
HELX_P
D
PHE
521
D
PHE
223
1
52
6
metalc
1.976
A
NI
2
F
NI
NI
1_555
A
CL
3
G
CL
CL
1_555
metalc
2.175
A
NI
2
F
NI
NI
1_555
A
HIS
404
A
NE2
HIS
106
1_555
metalc
2.060
B
NI
2
I
NI
NI
1_555
B
CL
3
J
CL
CL
1_555
metalc
2.560
B
NI
2
I
NI
NI
1_555
B
HIS
402
B
ND1
HIS
104
1_555
metalc
2.262
B
NI
2
I
NI
NI
1_555
B
HIS
404
B
NE2
HIS
106
1_555
metalc
2.616
C
NI
2
L
NI
NI
1_555
C
HIS
402
C
ND1
HIS
104
1_555
metalc
2.303
C
NI
2
L
NI
NI
1_555
C
HIS
404
C
NE2
HIS
106
1_555
metalc
2.624
D
NI
2
N
NI
NI
1_555
D
HIS
402
D
ND1
HIS
104
1_555
metalc
2.264
D
NI
2
N
NI
NI
1_555
D
HIS
404
D
NE2
HIS
106
1_555
NUCLEAR RECEPTOR
NUCLEAR RECEPTOR, RXR, TRANSCRIPTION FACTOR
RXRB_HUMAN
UNP
1
P28702
299
522
1H9U
299
522
P28702
A
1
1
224
299
522
1H9U
299
522
P28702
B
1
1
224
299
522
1H9U
299
522
P28702
C
1
1
224
299
522
1H9U
299
522
P28702
D
1
1
224
2
2
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLY
394
A
GLY
96
A
LEU
396
A
LEU
98
A
HIS
402
A
HIS
104
A
HIS
404
A
HIS
106
B
GLY
394
B
GLY
96
B
LEU
396
B
LEU
98
B
HIS
402
B
HIS
104
B
HIS
404
B
HIS
106
C
GLY
394
C
GLY
96
C
LEU
396
C
LEU
98
C
HIS
402
C
HIS
104
C
HIS
404
C
HIS
106
D
GLY
394
D
GLY
96
D
LEU
396
D
LEU
98
D
HIS
402
D
HIS
104
D
HIS
404
D
HIS
106
BINDING SITE FOR RESIDUE NI A 2
A
NI
2
Software
3
BINDING SITE FOR RESIDUE CL A 3
A
CL
3
Software
2
BINDING SITE FOR RESIDUE NI B 2
B
NI
2
Software
3
BINDING SITE FOR RESIDUE CL B 3
B
CL
3
Software
2
BINDING SITE FOR RESIDUE NI C 2
C
NI
2
Software
2
BINDING SITE FOR RESIDUE NI D 2
D
NI
2
Software
2
BINDING SITE FOR RESIDUE LG2 A 1
A
LG2
1
Software
15
BINDING SITE FOR RESIDUE LG2 B 1
B
LG2
1
Software
13
BINDING SITE FOR RESIDUE LG2 C 1
C
LG2
1
Software
13
BINDING SITE FOR RESIDUE LG2 D 1
D
LG2
1
Software
14
A
CL
3
G
CL
3
1_555
A
HIS
402
A
HIS
104
3
1_555
A
HIS
404
A
HIS
106
3
1_555
A
NI
2
F
NI
2
1_555
A
HIS
404
A
HIS
106
2
1_555
B
CL
3
J
CL
3
1_555
B
HIS
402
B
HIS
104
3
1_555
B
HIS
404
B
HIS
106
3
1_555
B
NI
2
I
NI
2
1_555
B
HIS
404
B
HIS
106
2
1_555
C
HIS
402
C
HIS
104
2
1_555
C
HIS
404
C
HIS
106
2
1_555
D
HIS
402
D
HIS
104
2
1_555
D
HIS
404
D
HIS
106
2
1_555
A
ILE
339
A
ILE
41
15
1_555
A
ALA
342
A
ALA
44
15
1_555
A
ALA
343
A
ALA
45
15
1_555
A
GLN
346
A
GLN
48
15
1_555
A
TRP
376
A
TRP
78
15
1_555
A
LEU
380
A
LEU
82
15
1_555
A
ILE
381
A
ILE
83
15
1_555
A
PHE
384
A
PHE
86
15
1_555
A
ARG
387
A
ARG
89
15
1_555
A
LEU
397
A
LEU
99
15
1_555
A
ALA
398
A
ALA
100
15
1_555
A
ILE
416
A
ILE
118
15
1_555
A
CYS
503
A
CYS
205
15
1_555
A
HIS
506
A
HIS
208
15
1_555
A
HOH
2001
O
HOH
15
1_555
B
ILE
339
B
ILE
41
13
1_555
B
ALA
342
B
ALA
44
13
1_555
B
ALA
343
B
ALA
45
13
1_555
B
GLN
346
B
GLN
48
13
1_555
B
LEU
380
B
LEU
82
13
1_555
B
ILE
381
B
ILE
83
13
1_555
B
PHE
384
B
PHE
86
13
1_555
B
ARG
387
B
ARG
89
13
1_555
B
LEU
397
B
LEU
99
13
1_555
B
ALA
398
B
ALA
100
13
1_555
B
ILE
416
B
ILE
118
13
1_555
B
CYS
503
B
CYS
205
13
1_555
B
HIS
506
B
HIS
208
13
1_555
C
ILE
339
C
ILE
41
13
1_555
C
ALA
342
C
ALA
44
13
1_555
C
ALA
343
C
ALA
45
13
1_555
C
GLN
346
C
GLN
48
13
1_555
C
TRP
376
C
TRP
78
13
1_555
C
LEU
380
C
LEU
82
13
1_555
C
ILE
381
C
ILE
83
13
1_555
C
ARG
387
C
ARG
89
13
1_555
C
LEU
397
C
LEU
99
13
1_555
C
ALA
398
C
ALA
100
13
1_555
C
CYS
503
C
CYS
205
13
1_555
C
HIS
506
C
HIS
208
13
1_555
C
HOH
2001
Q
HOH
13
1_555
D
ILE
339
D
ILE
41
14
1_555
D
ALA
342
D
ALA
44
14
1_555
D
ALA
343
D
ALA
45
14
1_555
D
GLN
346
D
GLN
48
14
1_555
D
TRP
376
D
TRP
78
14
1_555
D
LEU
380
D
LEU
82
14
1_555
D
ILE
381
D
ILE
83
14
1_555
D
PHE
384
D
PHE
86
14
1_555
D
ARG
387
D
ARG
89
14
1_555
D
LEU
397
D
LEU
99
14
1_555
D
ALA
398
D
ALA
100
14
1_555
D
ILE
416
D
ILE
118
14
1_555
D
CYS
503
D
CYS
205
14
1_555
D
HIS
506
D
HIS
208
14
1_555
5
C 1 2 1