0.017159 0.000000 0.000000 0.000000 0.012885 0.000000 0.000000 0.000000 0.009998 0.00000 0.00000 0.00000 Padmanabhan, K. Tulinsky, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 58.280 77.610 100.020 C21 H34 Cl N6 O3 1 453.986 D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide PPACK peptide-like C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 52 272 282 10.1107/S0907444995013977 15299700 An ambiguous structure of a DNA 15-mer thrombin complex. 1996 US J.Biol.Chem. JBCHA3 0071 0021-9258 268 17651 17654 The Structure of Alpha-Thrombin Inhibited by a 15-mer Single-Stranded DNA Aptamer 1993 THE BONDS OG SER H 195-C2 0G6 AND NE2 HIS H 57-C3 0G6 ARE OUTSIDE ACCEPTED RANGE THE INTERACTIONS INVOLVING DT 407, DG 408, AND DT 413 ARE OUTSIDE ACCEPTED RANGE 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M x-ray 1 1.0 4743.051 5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3' 1 syn polymer 4096.534 Thrombin light chain 3.4.21.5 residues 328-363 1 nat polymer 29780.219 Thrombin heavy chain 3.4.21.5 residues 364-622 1 nat polymer 453.986 D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide 1 syn non-polymer 18.015 water 151 nat water Coagulation factor II Coagulation factor II no no (DG)(DG)(DT)(DT)(DG)(DG)(DT)(DG)(DT)(DG)(DG)(DT)(DT)(DG)(DG) GGTTGGTGTGGTTGG D polydeoxyribonucleotide no no TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR L polypeptide(L) no no IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE H polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample 9606 Homo sapiens human Homo sample 9606 Homo sapiens 2.89 57.37 repository Initial release Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance Other 1 0 1996-04-03 1 1 2008-05-22 1 2 2011-07-13 1 3 2013-02-27 Y BNL 1995-10-03 REL 0G6 D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide HOH water THE INHIBITOR IS BOUND TO THE ACTIVE SITE OF THE ENZYME. THE UNBOUND FORM OF THE INHIBITOR IS D-PHE-PRO-ARG-CHLOROMETHYLKETONE. UPON REACTION WITH PROTEIN IT FORMS TWO COVALENT BONDS: 1) A COVALENT BOND TO SER 195 FORMING A HEMIKETAL AR7 AND 2) A COVALENT BOND TO NE2 OF HIS 57 CHYMOTRYPSIN NUMBERING SYSTEM IS USED FOR THROMBIN, BASED ON THE TOPOLOGICAL ALIGNMENT WITH THE STRUCTURE OF CHYMOTRYPSIN (BODE, W., ET AL., 1989, EMBO J. 8, 3467 - 3475). Inhibitor D-Phe-Pro-Arg-CH2Cl Peptide-like DPN 297 4 0G6 0G6 297 H HOH 575 5 HOH HOH 575 D HOH 626 5 HOH HOH 626 D HOH 627 5 HOH HOH 627 D HOH 631 5 HOH HOH 631 D HOH 638 5 HOH HOH 638 D HOH 649 5 HOH HOH 649 D HOH 656 5 HOH HOH 656 D HOH 663 5 HOH HOH 663 D HOH 666 5 HOH HOH 666 D HOH 672 5 HOH HOH 672 D HOH 673 5 HOH HOH 673 D HOH 679 5 HOH HOH 679 D HOH 681 5 HOH HOH 681 D HOH 688 5 HOH HOH 688 D HOH 698 5 HOH HOH 698 D HOH 702 5 HOH HOH 702 D HOH 516 5 HOH HOH 516 L HOH 528 5 HOH HOH 528 L HOH 569 5 HOH HOH 569 L HOH 609 5 HOH HOH 609 L HOH 624 5 HOH HOH 624 L HOH 632 5 HOH HOH 632 L HOH 635 5 HOH HOH 635 L HOH 660 5 HOH HOH 660 L HOH 668 5 HOH HOH 668 L HOH 687 5 HOH HOH 687 L HOH 503 5 HOH HOH 503 H HOH 507 5 HOH HOH 507 H HOH 509 5 HOH HOH 509 H HOH 510 5 HOH HOH 510 H HOH 511 5 HOH HOH 511 H HOH 512 5 HOH HOH 512 H HOH 514 5 HOH HOH 514 H HOH 515 5 HOH HOH 515 H HOH 519 5 HOH HOH 519 H HOH 520 5 HOH HOH 520 H HOH 524 5 HOH HOH 524 H HOH 525 5 HOH HOH 525 H HOH 527 5 HOH HOH 527 H HOH 529 5 HOH HOH 529 H HOH 531 5 HOH HOH 531 H HOH 534 5 HOH HOH 534 H HOH 535 5 HOH HOH 535 H HOH 536 5 HOH HOH 536 H HOH 537 5 HOH HOH 537 H HOH 539 5 HOH HOH 539 H HOH 540 5 HOH HOH 540 H HOH 541 5 HOH HOH 541 H HOH 542 5 HOH HOH 542 H HOH 543 5 HOH HOH 543 H HOH 544 5 HOH HOH 544 H HOH 549 5 HOH HOH 549 H HOH 550 5 HOH HOH 550 H HOH 552 5 HOH HOH 552 H HOH 554 5 HOH HOH 554 H HOH 556 5 HOH HOH 556 H HOH 559 5 HOH HOH 559 H HOH 560 5 HOH HOH 560 H HOH 561 5 HOH HOH 561 H HOH 562 5 HOH HOH 562 H HOH 564 5 HOH HOH 564 H HOH 567 5 HOH HOH 567 H HOH 570 5 HOH HOH 570 H HOH 574 5 HOH HOH 574 H HOH 577 5 HOH HOH 577 H HOH 579 5 HOH HOH 579 H HOH 581 5 HOH HOH 581 H HOH 582 5 HOH HOH 582 H HOH 585 5 HOH HOH 585 H HOH 586 5 HOH HOH 586 H HOH 587 5 HOH HOH 587 H HOH 589 5 HOH HOH 589 H HOH 590 5 HOH HOH 590 H HOH 594 5 HOH HOH 594 H HOH 596 5 HOH HOH 596 H HOH 597 5 HOH HOH 597 H HOH 598 5 HOH HOH 598 H HOH 599 5 HOH HOH 599 H HOH 600 5 HOH HOH 600 H HOH 601 5 HOH HOH 601 H HOH 602 5 HOH HOH 602 H HOH 603 5 HOH HOH 603 H HOH 604 5 HOH HOH 604 H HOH 606 5 HOH HOH 606 H HOH 607 5 HOH HOH 607 H HOH 608 5 HOH HOH 608 H HOH 610 5 HOH HOH 610 H HOH 611 5 HOH HOH 611 H HOH 619 5 HOH HOH 619 H HOH 621 5 HOH HOH 621 H HOH 622 5 HOH HOH 622 H HOH 623 5 HOH HOH 623 H HOH 625 5 HOH HOH 625 H HOH 628 5 HOH HOH 628 H HOH 629 5 HOH HOH 629 H HOH 630 5 HOH HOH 630 H HOH 633 5 HOH HOH 633 H HOH 634 5 HOH HOH 634 H HOH 636 5 HOH HOH 636 H HOH 637 5 HOH HOH 637 H HOH 639 5 HOH HOH 639 H HOH 640 5 HOH HOH 640 H HOH 641 5 HOH HOH 641 H HOH 642 5 HOH HOH 642 H HOH 643 5 HOH HOH 643 H HOH 644 5 HOH HOH 644 H HOH 645 5 HOH HOH 645 H HOH 646 5 HOH HOH 646 H HOH 647 5 HOH HOH 647 H HOH 648 5 HOH HOH 648 H HOH 650 5 HOH HOH 650 H HOH 651 5 HOH HOH 651 H HOH 652 5 HOH HOH 652 H HOH 653 5 HOH HOH 653 H HOH 655 5 HOH HOH 655 H HOH 657 5 HOH HOH 657 H HOH 658 5 HOH HOH 658 H HOH 659 5 HOH HOH 659 H HOH 661 5 HOH HOH 661 H HOH 662 5 HOH HOH 662 H HOH 664 5 HOH HOH 664 H HOH 665 5 HOH HOH 665 H HOH 667 5 HOH HOH 667 H HOH 669 5 HOH HOH 669 H HOH 670 5 HOH HOH 670 H HOH 671 5 HOH HOH 671 H HOH 674 5 HOH HOH 674 H HOH 675 5 HOH HOH 675 H HOH 676 5 HOH HOH 676 H HOH 677 5 HOH HOH 677 H HOH 678 5 HOH HOH 678 H HOH 680 5 HOH HOH 680 H HOH 682 5 HOH HOH 682 H HOH 683 5 HOH HOH 683 H HOH 684 5 HOH HOH 684 H HOH 685 5 HOH HOH 685 H HOH 686 5 HOH HOH 686 H HOH 689 5 HOH HOH 689 H HOH 690 5 HOH HOH 690 H HOH 691 5 HOH HOH 691 H HOH 692 5 HOH HOH 692 H HOH 693 5 HOH HOH 693 H HOH 694 5 HOH HOH 694 H HOH 695 5 HOH HOH 695 H HOH 696 5 HOH HOH 696 H HOH 697 5 HOH HOH 697 H HOH 699 5 HOH HOH 699 H HOH 700 5 HOH HOH 700 H HOH 701 5 HOH HOH 701 H HOH 703 5 HOH HOH 703 H HOH 704 5 HOH HOH 704 H DG 401 n 1 DG 401 D DG 402 n 2 DG 402 D DT 403 n 3 DT 403 D DT 404 n 4 DT 404 D DG 405 n 5 DG 405 D DG 406 n 6 DG 406 D DT 407 n 7 DT 407 D DG 408 n 8 DG 408 D DT 409 n 9 DT 409 D DG 410 n 10 DG 410 D DG 411 n 11 DG 411 D DT 412 n 12 DT 412 D DT 413 n 13 DT 413 D DG 414 n 14 DG 414 D DG 415 n 15 DG 415 D n 1 -5 L n 2 -4 L n 3 -3 L n 4 -2 L n 5 -1 L n 6 0 L ALA 1 n 7 B ALA 1 L ASP 1 n 8 A ASP 1 L CYS 1 n 9 CYS 1 L GLY 2 n 10 GLY 2 L LEU 3 n 11 LEU 3 L ARG 4 n 12 ARG 4 L PRO 5 n 13 PRO 5 L LEU 6 n 14 LEU 6 L PHE 7 n 15 PHE 7 L GLU 8 n 16 GLU 8 L LYS 9 n 17 LYS 9 L LYS 10 n 18 LYS 10 L SER 11 n 19 SER 11 L LEU 12 n 20 LEU 12 L GLU 13 n 21 GLU 13 L ASP 14 n 22 ASP 14 L LYS 14 n 23 A LYS 14 L THR 14 n 24 B THR 14 L GLU 14 n 25 C GLU 14 L ARG 14 n 26 D ARG 14 L GLU 14 n 27 E GLU 14 L LEU 14 n 28 F LEU 14 L LEU 14 n 29 G LEU 14 L GLU 14 n 30 H GLU 14 L SER 14 n 31 I SER 14 L TYR 14 n 32 J TYR 14 L ILE 14 n 33 K ILE 14 L n 34 15 L n 35 16 L n 36 17 L ILE 16 n 1 ILE 16 H VAL 17 n 2 VAL 17 H GLU 18 n 3 GLU 18 H GLY 19 n 4 GLY 19 H SER 20 n 5 SER 20 H ASP 21 n 6 ASP 21 H ALA 22 n 7 ALA 22 H GLU 23 n 8 GLU 23 H ILE 24 n 9 ILE 24 H GLY 25 n 10 GLY 25 H MET 26 n 11 MET 26 H SER 27 n 12 SER 27 H PRO 28 n 13 PRO 28 H TRP 29 n 14 TRP 29 H GLN 30 n 15 GLN 30 H VAL 31 n 16 VAL 31 H MET 32 n 17 MET 32 H LEU 33 n 18 LEU 33 H PHE 34 n 19 PHE 34 H ARG 35 n 20 ARG 35 H LYS 36 n 21 LYS 36 H SER 36 n 22 A SER 36 H PRO 37 n 23 PRO 37 H GLN 38 n 24 GLN 38 H GLU 39 n 25 GLU 39 H LEU 40 n 26 LEU 40 H LEU 41 n 27 LEU 41 H CYS 42 n 28 CYS 42 H GLY 43 n 29 GLY 43 H ALA 44 n 30 ALA 44 H SER 45 n 31 SER 45 H LEU 46 n 32 LEU 46 H ILE 47 n 33 ILE 47 H SER 48 n 34 SER 48 H ASP 49 n 35 ASP 49 H ARG 50 n 36 ARG 50 H TRP 51 n 37 TRP 51 H VAL 52 n 38 VAL 52 H LEU 53 n 39 LEU 53 H THR 54 n 40 THR 54 H ALA 55 n 41 ALA 55 H ALA 56 n 42 ALA 56 H HIS 57 n 43 HIS 57 H CYS 58 n 44 CYS 58 H LEU 59 n 45 LEU 59 H LEU 60 n 46 LEU 60 H TYR 60 n 47 A TYR 60 H PRO 60 n 48 B PRO 60 H PRO 60 n 49 C PRO 60 H TRP 60 n 50 D TRP 60 H ASP 60 n 51 E ASP 60 H LYS 60 n 52 F LYS 60 H ASN 60 n 53 G ASN 60 H PHE 60 n 54 H PHE 60 H THR 60 n 55 I THR 60 H GLU 61 n 56 GLU 61 H ASN 62 n 57 ASN 62 H ASP 63 n 58 ASP 63 H LEU 64 n 59 LEU 64 H LEU 65 n 60 LEU 65 H VAL 66 n 61 VAL 66 H ARG 67 n 62 ARG 67 H ILE 68 n 63 ILE 68 H GLY 69 n 64 GLY 69 H LYS 70 n 65 LYS 70 H HIS 71 n 66 HIS 71 H SER 72 n 67 SER 72 H ARG 73 n 68 ARG 73 H THR 74 n 69 THR 74 H ARG 75 n 70 ARG 75 H TYR 76 n 71 TYR 76 H GLU 77 n 72 GLU 77 H ARG 77 n 73 A ARG 77 H ASN 78 n 74 ASN 78 H ILE 79 n 75 ILE 79 H GLU 80 n 76 GLU 80 H LYS 81 n 77 LYS 81 H ILE 82 n 78 ILE 82 H SER 83 n 79 SER 83 H MET 84 n 80 MET 84 H LEU 85 n 81 LEU 85 H GLU 86 n 82 GLU 86 H LYS 87 n 83 LYS 87 H ILE 88 n 84 ILE 88 H TYR 89 n 85 TYR 89 H ILE 90 n 86 ILE 90 H HIS 91 n 87 HIS 91 H PRO 92 n 88 PRO 92 H ARG 93 n 89 ARG 93 H TYR 94 n 90 TYR 94 H ASN 95 n 91 ASN 95 H TRP 96 n 92 TRP 96 H ARG 97 n 93 ARG 97 H GLU 97 n 94 A GLU 97 H ASN 98 n 95 ASN 98 H LEU 99 n 96 LEU 99 H ASP 100 n 97 ASP 100 H ARG 101 n 98 ARG 101 H ASP 102 n 99 ASP 102 H ILE 103 n 100 ILE 103 H ALA 104 n 101 ALA 104 H LEU 105 n 102 LEU 105 H MET 106 n 103 MET 106 H LYS 107 n 104 LYS 107 H LEU 108 n 105 LEU 108 H LYS 109 n 106 LYS 109 H LYS 110 n 107 LYS 110 H PRO 111 n 108 PRO 111 H VAL 112 n 109 VAL 112 H ALA 113 n 110 ALA 113 H PHE 114 n 111 PHE 114 H SER 115 n 112 SER 115 H ASP 116 n 113 ASP 116 H TYR 117 n 114 TYR 117 H ILE 118 n 115 ILE 118 H HIS 119 n 116 HIS 119 H PRO 120 n 117 PRO 120 H VAL 121 n 118 VAL 121 H CYS 122 n 119 CYS 122 H LEU 123 n 120 LEU 123 H PRO 124 n 121 PRO 124 H ASP 125 n 122 ASP 125 H ARG 126 n 123 ARG 126 H GLU 127 n 124 GLU 127 H THR 128 n 125 THR 128 H ALA 129 n 126 ALA 129 H ALA 129 n 127 A ALA 129 H SER 129 n 128 B SER 129 H LEU 129 n 129 C LEU 129 H LEU 130 n 130 LEU 130 H GLN 131 n 131 GLN 131 H ALA 132 n 132 ALA 132 H GLY 133 n 133 GLY 133 H TYR 134 n 134 TYR 134 H LYS 135 n 135 LYS 135 H GLY 136 n 136 GLY 136 H ARG 137 n 137 ARG 137 H VAL 138 n 138 VAL 138 H THR 139 n 139 THR 139 H GLY 140 n 140 GLY 140 H TRP 141 n 141 TRP 141 H GLY 142 n 142 GLY 142 H ASN 143 n 143 ASN 143 H LEU 144 n 144 LEU 144 H LYS 145 n 145 LYS 145 H GLU 146 n 146 GLU 146 H THR 147 n 147 THR 147 H TRP 148 n 148 TRP 148 H n 149 A 148 H n 150 B 148 H n 151 C 148 H n 152 D 148 H n 153 E 148 H n 154 F 148 H GLY 150 n 155 GLY 150 H GLN 151 n 156 GLN 151 H PRO 152 n 157 PRO 152 H SER 153 n 158 SER 153 H VAL 154 n 159 VAL 154 H LEU 155 n 160 LEU 155 H GLN 156 n 161 GLN 156 H VAL 157 n 162 VAL 157 H VAL 158 n 163 VAL 158 H ASN 159 n 164 ASN 159 H LEU 160 n 165 LEU 160 H PRO 161 n 166 PRO 161 H ILE 162 n 167 ILE 162 H VAL 163 n 168 VAL 163 H GLU 164 n 169 GLU 164 H ARG 165 n 170 ARG 165 H PRO 166 n 171 PRO 166 H VAL 167 n 172 VAL 167 H CYS 168 n 173 CYS 168 H LYS 169 n 174 LYS 169 H ASP 170 n 175 ASP 170 H SER 171 n 176 SER 171 H THR 172 n 177 THR 172 H ARG 173 n 178 ARG 173 H ILE 174 n 179 ILE 174 H ARG 175 n 180 ARG 175 H ILE 176 n 181 ILE 176 H THR 177 n 182 THR 177 H ASP 178 n 183 ASP 178 H ASN 179 n 184 ASN 179 H MET 180 n 185 MET 180 H PHE 181 n 186 PHE 181 H CYS 182 n 187 CYS 182 H ALA 183 n 188 ALA 183 H GLY 184 n 189 GLY 184 H TYR 184 n 190 A TYR 184 H LYS 185 n 191 LYS 185 H PRO 186 n 192 PRO 186 H ASP 186 n 193 A ASP 186 H GLU 186 n 194 B GLU 186 H GLY 186 n 195 C GLY 186 H LYS 186 n 196 D LYS 186 H ARG 187 n 197 ARG 187 H GLY 188 n 198 GLY 188 H ASP 189 n 199 ASP 189 H ALA 190 n 200 ALA 190 H CYS 191 n 201 CYS 191 H GLU 192 n 202 GLU 192 H GLY 193 n 203 GLY 193 H ASP 194 n 204 ASP 194 H SER 195 n 205 SER 195 H GLY 196 n 206 GLY 196 H GLY 197 n 207 GLY 197 H PRO 198 n 208 PRO 198 H PHE 199 n 209 PHE 199 H VAL 200 n 210 VAL 200 H MET 201 n 211 MET 201 H LYS 202 n 212 LYS 202 H SER 203 n 213 SER 203 H PRO 204 n 214 PRO 204 H PHE 204 n 215 A PHE 204 H ASN 204 n 216 B ASN 204 H ASN 205 n 217 ASN 205 H ARG 206 n 218 ARG 206 H TRP 207 n 219 TRP 207 H TYR 208 n 220 TYR 208 H GLN 209 n 221 GLN 209 H MET 210 n 222 MET 210 H GLY 211 n 223 GLY 211 H ILE 212 n 224 ILE 212 H VAL 213 n 225 VAL 213 H SER 214 n 226 SER 214 H TRP 215 n 227 TRP 215 H GLY 216 n 228 GLY 216 H GLU 217 n 229 GLU 217 H GLY 219 n 230 GLY 219 H CYS 220 n 231 CYS 220 H ASP 221 n 232 ASP 221 H ARG 221 n 233 A ARG 221 H ASP 222 n 234 ASP 222 H GLY 223 n 235 GLY 223 H LYS 224 n 236 LYS 224 H TYR 225 n 237 TYR 225 H GLY 226 n 238 GLY 226 H PHE 227 n 239 PHE 227 H TYR 228 n 240 TYR 228 H THR 229 n 241 THR 229 H HIS 230 n 242 HIS 230 H VAL 231 n 243 VAL 231 H PHE 232 n 244 PHE 232 H ARG 233 n 245 ARG 233 H LEU 234 n 246 LEU 234 H LYS 235 n 247 LYS 235 H LYS 236 n 248 LYS 236 H TRP 237 n 249 TRP 237 H ILE 238 n 250 ILE 238 H GLN 239 n 251 GLN 239 H LYS 240 n 252 LYS 240 H VAL 241 n 253 VAL 241 H ILE 242 n 254 ILE 242 H ASP 243 n 255 ASP 243 H GLN 244 n 256 GLN 244 H PHE 245 n 257 PHE 245 H GLY 246 n 258 GLY 246 H GLU 247 n 259 GLU 247 H author_defined_assembly 3 trimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 H O LYS 81 C O LYS 77 H N ILE 68 C N ILE 63 H O LEU 65 C O LEU 60 H N PHE 34 C N PHE 19 H O VAL 31 C O VAL 16 H N ALA 44 C N ALA 30 H O VAL 52 C O VAL 38 H N MET 106 C N MET 103 H O LEU 105 C O LEU 102 H N TYR 89 C N TYR 85 H O GLY 136 C O GLY 136 H N LEU 160 C N LEU 165 H O PHE 181 C O PHE 186 H N TYR 228 C N TYR 240 H O PHE 199 C O PHE 209 H N GLY 211 C N GLY 223 1 L THR -5 B THR 1 1 Y 1 L PHE -4 B PHE 2 1 Y 1 L GLY -3 B GLY 3 1 Y 1 L SER -2 B SER 4 1 Y 1 L GLY -1 B GLY 5 1 Y 1 L GLU 0 B GLU 6 1 Y 1 L ASP 15 B ASP 34 1 Y 1 L GLY 16 B GLY 35 1 Y 1 L ARG 17 B ARG 36 1 Y A 1 H THR 148 C THR 149 1 Y B 1 H ALA 148 C ALA 150 1 Y C 1 H ASN 148 C ASN 151 1 Y D 1 H VAL 148 C VAL 152 1 Y E 1 H GLY 148 C GLY 153 1 Y F 1 H LYS 148 C LYS 154 1 Y 1 H C2 0G6 297 PLANAR 1 D H C7 CG2 DT ILE 407 24 0.93 1 D H O4' NH2 DG ARG 408 75 1.24 1 D H C4' NH2 DG ARG 408 75 1.49 1 D H C2' NH2 DG ARG 408 75 1.62 1 D H C1' NH2 DG ARG 408 75 1.66 1 D H C8 NE DG ARG 408 75 1.71 1 D H C7 CB DT ILE 407 24 1.74 1 H H OG O2 SER 0G6 195 297 1.89 1 L H OE2 NZ GLU LYS 8 202 1.90 1 D H C5 CG2 DT ILE 407 24 1.92 1 D H C3' NH2 DG ARG 408 75 1.95 1 D D N2 N7 DG DG 402 405 1.96 1 D H C5' NH1 DG ARG 408 75 1.97 1 D H C5' NH2 DG ARG 408 75 2.01 1 D D O6 N1 DG DG 402 414 2.04 1 H H CB O2 SER 0G6 195 297 2.04 1 H H OD2 OE2 ASP GLU 49 247 2.05 1 H H NE1 N TRP GLU 51 247 2.05 1 D D O5' O4 DT DT 407 409 2.05 1 H H O N MET LYS 84 109 2.07 1 D D O4' N3 DT DT 407 409 2.09 1 D H O4' CZ DG ARG 408 75 2.10 1 H H OG1 N THR ILE 172 174 2.15 1 H H N OD2 CYS ASP 191 194 2.18 1 H H N OE2 HIS GLU 71 77 2.18 H 1 H PHE 60 13.06 1 H ASN 78 -12.66 1 D DG 401 0.057 SIDE CHAIN D 1 L ARG 14 0.123 SIDE CHAIN 1 17.33 2.50 111.00 128.33 D D D O5' C5' C4' DG DG DG 401 401 401 N 1 -4.93 0.40 104.50 99.57 D D D O4' C4' C3' DG DG DG 401 401 401 N 1 -9.82 0.80 109.40 99.58 D D D O5' C5' C4' DG DG DG 402 402 402 N 1 -11.19 1.60 120.90 109.71 D D D P O5' C5' DG DG DG 402 402 402 N 1 -6.28 1.00 110.10 103.82 D D D C1' O4' C4' DG DG DG 402 402 402 N 1 3.45 0.50 111.50 114.95 D D D C5 C6 N1 DG DG DG 402 402 402 N 1 9.63 1.60 120.90 130.53 D D D P O5' C5' DT DT DT 403 403 403 N 1 13.52 2.00 112.30 125.82 D D D C4' C3' O3' DT DT DT 403 403 403 N 1 -4.79 0.70 102.20 97.41 D D D C4' C3' C2' DT DT DT 403 403 403 N 1 2.46 0.30 108.30 110.76 D D D O4' C1' N1 DT DT DT 403 403 403 N 1 -4.59 0.60 127.20 122.61 D D D C2 N3 C4 DT DT DT 403 403 403 N 1 3.68 0.60 115.20 118.88 D D D N3 C4 C5 DT DT DT 403 403 403 N 1 8.47 1.20 119.70 128.17 D D D C3' O3' P DT DT DT 403 403 404 Y 1 16.16 1.90 104.00 120.16 D D D O3' P O5' DT DT DT 403 404 404 Y 1 16.24 1.20 115.70 131.94 D D D C5' C4' C3' DT DT DT 404 404 404 N 1 -17.10 1.90 109.30 92.20 D D D C5' C4' O4' DT DT DT 404 404 404 N 1 -6.64 1.00 110.10 103.46 D D D C1' O4' C4' DT DT DT 404 404 404 N 1 13.20 2.00 112.30 125.50 D D D C4' C3' O3' DT DT DT 404 404 404 N 1 3.44 0.30 108.30 111.74 D D D O4' C1' N1 DT DT DT 404 404 404 N 1 -5.62 0.60 127.20 121.58 D D D C2 N3 C4 DT DT DT 404 404 404 N 1 4.84 0.60 115.20 120.04 D D D N3 C4 C5 DT DT DT 404 404 404 N 1 -6.26 0.60 122.30 116.04 D D D N3 C2 O2 DT DT DT 404 404 404 N 1 -4.37 0.60 119.90 115.53 D D D N3 C4 O4 DT DT DT 404 404 404 N 1 32.08 1.20 119.70 151.78 D D D C3' O3' P DT DT DG 404 404 405 Y 1 7.32 1.10 110.50 117.82 D D D O3' P OP2 DT DG DG 404 405 405 Y 1 -10.22 1.50 119.60 109.38 D D D OP1 P OP2 DG DG DG 405 405 405 N 1 -6.73 0.80 102.40 95.67 D D D C3' C2' C1' DG DG DG 405 405 405 N 1 23.02 1.20 119.70 142.72 D D D C3' O3' P DG DG DG 405 405 406 Y 1 -10.61 1.50 119.60 108.99 D D D OP1 P OP2 DG DG DG 406 406 406 N 1 -8.79 0.80 102.40 93.61 D D D C3' C2' C1' DG DG DG 406 406 406 N 1 11.72 0.30 108.30 120.02 D D D O4' C1' N9 DG DG DG 406 406 406 N 1 3.05 0.50 111.50 114.55 D D D C5 C6 N1 DG DG DG 406 406 406 N 1 -6.58 0.80 102.40 95.82 D D D C3' C2' C1' DT DT DT 407 407 407 N 1 7.25 0.30 108.30 115.55 D D D O4' C1' N1 DT DT DT 407 407 407 N 1 -4.78 0.60 127.20 122.42 D D D C2 N3 C4 DT DT DT 407 407 407 N 1 3.71 0.60 115.20 118.91 D D D N3 C4 C5 DT DT DT 407 407 407 N 1 -5.17 0.80 102.40 97.23 D D D C3' C2' C1' DG DG DG 408 408 408 N 1 6.74 0.30 108.30 115.04 D D D O4' C1' N9 DG DG DG 408 408 408 N 1 10.12 1.20 119.70 129.82 D D D C3' O3' P DG DG DT 408 408 409 Y 1 -12.31 1.50 119.60 107.29 D D D OP1 P OP2 DT DT DT 409 409 409 N 1 4.13 0.30 108.30 112.43 D D D O4' C1' N1 DT DT DT 409 409 409 N 1 3.78 0.60 114.60 118.38 D D D N1 C2 N3 DT DT DT 409 409 409 N 1 -5.12 0.60 127.20 122.08 D D D C2 N3 C4 DT DT DT 409 409 409 N 1 -4.68 0.60 119.90 115.22 D D D N3 C4 O4 DT DT DT 409 409 409 N 1 8.80 1.20 119.70 128.50 D D D C3' O3' P DT DT DG 409 409 410 Y 1 -9.38 0.80 109.40 100.02 D D D O5' C5' C4' DG DG DG 410 410 410 N 1 7.94 1.20 110.70 118.64 D D D O5' P OP1 DG DG DG 411 411 411 N 1 -6.18 0.80 109.40 103.22 D D D O5' C5' C4' DG DG DG 411 411 411 N 1 -7.27 1.00 110.10 102.83 D D D C1' O4' C4' DG DG DG 411 411 411 N 1 -8.99 0.80 102.40 93.41 D D D C3' C2' C1' DG DG DG 411 411 411 N 1 -6.29 0.80 105.90 99.61 D D D O4' C1' C2' DG DG DG 411 411 411 N 1 9.00 0.30 108.30 117.30 D D D O4' C1' N9 DG DG DG 411 411 411 N 1 -9.02 1.50 119.60 110.58 D D D OP1 P OP2 DT DT DT 412 412 412 N 1 5.72 0.30 108.30 114.02 D D D O4' C1' N1 DT DT DT 412 412 412 N 1 -4.67 0.60 127.20 122.53 D D D C2 N3 C4 DT DT DT 412 412 412 N 1 3.80 0.60 115.20 119.00 D D D N3 C4 C5 DT DT DT 412 412 412 N 1 12.67 1.20 119.70 132.37 D D D C3' O3' P DT DT DT 412 412 413 Y 1 14.35 1.60 120.90 135.25 D D D P O5' C5' DT DT DT 413 413 413 N 1 7.29 0.30 108.30 115.59 D D D O4' C1' N1 DT DT DT 413 413 413 N 1 3.92 0.60 114.60 118.52 D D D N1 C2 N3 DT DT DT 413 413 413 N 1 -5.72 0.60 127.20 121.48 D D D C2 N3 C4 DT DT DT 413 413 413 N 1 4.41 0.60 115.20 119.61 D D D N3 C4 C5 DT DT DT 413 413 413 N 1 -11.94 1.50 119.60 107.66 D D D OP1 P OP2 DG DG DG 414 414 414 N 1 19.49 1.60 120.90 140.39 D D D P O5' C5' DG DG DG 414 414 414 N 1 -4.34 0.70 102.20 97.86 D D D C4' C3' C2' DG DG DG 414 414 414 N 1 3.67 0.30 108.30 111.97 D D D O4' C1' N9 DG DG DG 414 414 414 N 1 3.07 0.50 111.50 114.57 D D D C5 C6 N1 DG DG DG 414 414 414 N 1 12.28 1.90 104.00 116.28 D D D O3' P O5' DG DG DG 414 415 415 Y 1 15.04 1.60 120.90 135.94 D D D P O5' C5' DG DG DG 415 415 415 N 1 7.22 0.30 108.30 115.52 D D D O4' C1' N9 DG DG DG 415 415 415 N 1 -4.52 0.60 119.90 115.38 D D D N1 C6 O6 DG DG DG 415 415 415 N A A A 1 -8.76 0.90 118.30 109.54 L L L CB CG OD2 ASP ASP ASP 1 1 1 N 1 11.71 1.20 123.30 135.01 L L L OE1 CD OE2 GLU GLU GLU 13 13 13 N B B B 1 -11.77 1.90 110.30 98.53 L L L N CA CB THR THR THR 14 14 14 N C C C 1 13.11 1.20 123.30 136.41 L L L OE1 CD OE2 GLU GLU GLU 14 14 14 N G G G 1 16.76 1.90 110.20 126.96 L L L CB CA C LEU LEU LEU 14 14 14 N I I I 1 -13.17 1.50 110.50 97.33 L L L N CA CB SER SER SER 14 14 14 N 1 15.62 2.50 121.70 137.32 H H H C N CA VAL GLU GLU 17 18 18 Y 1 12.64 1.80 110.60 123.24 H H H N CA CB GLU GLU GLU 18 18 18 N 1 -8.72 0.90 118.30 109.58 H H H CB CG OD2 ASP ASP ASP 21 21 21 N 1 14.05 2.20 113.40 127.45 H H H CA CB CG GLU GLU GLU 23 23 23 N 1 11.46 1.60 122.70 134.16 H H H O C N VAL VAL MET 31 31 32 Y 1 14.03 1.90 110.20 124.23 H H H CB CA C LEU LEU LEU 33 33 33 N 1 15.85 1.40 123.60 139.45 H H H CD NE CZ ARG ARG ARG 35 35 35 N 1 4.64 0.50 120.30 124.94 H H H NE CZ NH1 ARG ARG ARG 35 35 35 N 1 -3.56 0.50 120.30 116.74 H H H NE CZ NH2 ARG ARG ARG 35 35 35 N 1 13.96 1.90 110.20 124.16 H H H CB CA C LEU LEU LEU 41 41 41 N 1 10.41 1.50 110.10 120.51 H H H CB CA C ALA ALA ALA 55 55 55 N 1 -9.23 1.40 110.10 100.87 H H H N CA CB ALA ALA ALA 55 55 55 N 1 12.87 2.00 118.30 131.17 H H H CG CD OE1 GLU GLU GLU 61 61 61 N 1 5.98 0.90 118.30 124.28 H H H CB CG OD2 ASP ASP ASP 63 63 63 N 1 15.79 2.30 115.30 131.09 H H H CA CB CG LEU LEU LEU 65 65 65 N 1 3.51 0.50 120.30 123.81 H H H NE CZ NH2 ARG ARG ARG 73 73 73 N 1 -16.21 2.70 111.60 95.39 H H H CB CA C THR THR THR 74 74 74 N A A A 1 3.90 0.50 120.30 124.20 H H H NE CZ NH1 ARG ARG ARG 77 77 77 N 1 9.62 1.20 123.30 132.92 H H H OE1 CD OE2 GLU GLU GLU 80 80 80 N 1 15.85 2.50 121.70 137.55 H H H C N CA SER MET MET 83 84 84 Y 1 -3.89 0.60 121.00 117.11 H H H CB CG CD1 TYR TYR TYR 89 89 89 N 1 4.32 0.50 120.30 124.62 H H H NE CZ NH2 ARG ARG ARG 93 93 93 N 1 3.32 0.50 120.30 123.62 H H H NE CZ NH2 ARG ARG ARG 97 97 97 N 1 3.61 0.50 120.30 123.91 H H H NE CZ NH2 ARG ARG ARG 101 101 101 N 1 9.96 1.60 122.70 132.66 H H H O C N ARG ARG ASP 101 101 102 Y 1 6.06 0.90 118.30 124.36 H H H CB CG OD2 ASP ASP ASP 116 116 116 N 1 9.88 1.60 122.70 132.58 H H H O C N CYS CYS LEU 122 122 123 Y 1 13.46 2.20 113.40 126.86 H H H CA CB CG ARG ARG ARG 137 137 137 N 1 11.49 1.40 123.60 135.09 H H H CD NE CZ ARG ARG ARG 137 137 137 N 1 8.70 0.50 120.30 129.00 H H H NE CZ NH1 ARG ARG ARG 137 137 137 N 1 12.67 1.90 110.20 122.87 H H H CB CA C LEU LEU LEU 144 144 144 N 1 11.51 1.80 110.60 122.11 H H H N CA CB GLN GLN GLN 151 151 151 N 1 10.35 1.60 122.70 133.05 H H H O C N GLN GLN VAL 156 156 157 Y 1 14.40 1.90 121.10 135.50 H H H O C N LEU LEU PRO 160 160 161 Y 1 3.80 0.50 120.30 124.10 H H H NE CZ NH1 ARG ARG ARG 165 165 165 N 1 -4.70 0.50 120.30 115.60 H H H NE CZ NH2 ARG ARG ARG 165 165 165 N 1 -14.95 2.20 113.40 98.45 H H H CA CB CG ASP ASP ASP 170 170 170 N 1 -3.82 0.50 120.30 116.48 H H H NE CZ NH1 ARG ARG ARG 173 173 173 N 1 3.19 0.50 120.30 123.49 H H H NE CZ NH2 ARG ARG ARG 175 175 175 N 1 15.99 1.10 114.20 130.19 H H H CA CB SG CYS CYS CYS 182 182 182 N A A 1 15.60 2.50 121.70 137.30 H H H C N CA PRO ASP ASP 186 186 186 Y 1 -11.81 0.90 118.30 106.49 H H H CB CG OD1 ASP ASP ASP 194 194 194 N 1 8.85 0.90 118.30 127.15 H H H CB CG OD2 ASP ASP ASP 194 194 194 N A A A 1 -5.16 0.70 120.80 115.64 H H H CB CG CD1 PHE PHE PHE 204 204 204 N 1 10.60 1.40 123.60 134.20 H H H CD NE CZ ARG ARG ARG 206 206 206 N 1 -7.25 1.10 119.40 112.15 H H H NH1 CZ NH2 ARG ARG ARG 206 206 206 N 1 3.93 0.50 120.30 124.23 H H H NE CZ NH1 ARG ARG ARG 206 206 206 N 1 3.02 0.50 120.30 123.32 H H H NE CZ NH2 ARG ARG ARG 206 206 206 N 1 10.43 1.60 122.70 133.13 H H H O C N TRP TRP TYR 207 207 208 Y 1 13.27 2.10 122.30 135.57 H H H C N CA TRP GLY GLY 215 216 216 Y A A 1 13.08 1.60 122.70 135.78 H H H O C N ARG ARG ASP 221 221 222 Y 1 7.20 0.90 118.30 125.50 H H H CB CG OD1 ASP ASP ASP 222 222 222 N 1 -12.00 2.00 110.40 98.40 H H H CB CA C PHE PHE PHE 232 232 232 N 1 11.05 1.60 122.70 133.75 H H H O C N ILE ILE ASP 242 242 243 Y 1 -8.88 1.20 123.30 114.42 H H H OE1 CD OE2 GLU GLU GLU 247 247 247 N 1 D D O4' C1' DG DG 401 401 0.071 0.011 1.420 1.491 N 1 D H OP2 NH1 DT ARG 413 101 1.15 1_555 2_564 1 D H P NH1 DT ARG 413 101 1.50 1_555 2_564 1 D H C5' NE DT ARG 413 101 1.58 1_555 2_564 1 D H O5' NH1 DT ARG 413 101 1.72 1_555 2_564 1 D H C5' CZ DT ARG 413 101 1.80 1_555 2_564 1 D H C5' CD DT ARG 413 101 1.84 1_555 2_564 1 D H O5' CZ DT ARG 413 101 2.08 1_555 2_564 1 D H C5' NH1 DT ARG 413 101 2.15 1_555 2_564 A 1 L ASP 1 -104.07 62.21 1 L PHE 7 -122.38 -75.02 J 1 L TYR 14 -49.63 -9.08 1 H SER 27 -158.27 78.97 1 H LYS 36 -78.43 -70.74 1 H GLN 38 -61.17 91.17 1 H SER 48 177.48 155.74 1 H ASP 49 -39.91 -15.11 1 H ARG 50 -134.79 -34.60 1 H HIS 57 -54.53 -3.77 E 1 H ASP 60 86.13 17.88 G 1 H ASN 60 -157.25 75.06 1 H GLU 61 -29.36 -32.20 1 H HIS 71 -153.24 -74.99 1 H GLU 77 -58.61 85.68 A 1 H ARG 77 -29.50 -42.84 1 H ILE 79 -120.90 -50.35 1 H ARG 93 -79.23 22.36 A 1 H GLU 97 -90.62 -61.77 1 H ASN 98 -159.20 11.06 1 H ARG 101 39.85 60.36 1 H LYS 109 -63.15 -71.73 1 H LEU 130 -67.55 92.30 1 H TRP 141 -81.27 47.85 1 H ARG 165 -26.18 -51.07 B 1 H GLU 186 -49.43 -2.81 D 1 H LYS 186 -172.42 143.94 1 H ASP 189 178.39 164.07 1 H GLU 192 -52.11 103.58 1 H SER 195 -29.62 135.50 1 H PRO 204 -97.66 34.81 B 1 H ASN 204 -141.96 -6.51 1 H SER 214 -124.73 -56.11 1 H TRP 215 -163.18 -156.89 1 H ASP 221 71.22 52.05 1 H HIS 230 -67.12 83.27 1 H PHE 232 -33.90 -76.94 1 H ARG 233 -27.72 -29.86 1 H ASP 243 -92.94 37.02 1 H GLN 244 -149.12 -32.32 1 H PHE 245 -170.95 25.80 0.161 2.800 10.000 7717 68.000 1 2.000 2.800 10.000 151 2771 30 315 2275 2.500 15.000 1HAP 9225 1.000 1 57.000 refinement NUCLIN refinement PROLSQ ALPHA-THROMBIN (E.C.3.4.21.5)/DNA COMPLEX + D-PHE-PRO-ARG-CHLOROMETHYLKETONE (PPACK) COMPLEX OF HUMAN ALPHA-THROMBIN WITH A 15MER OLIGONUCLEOTIDE GGTTGGTGTGGTTGG (BASED ON X-RAY MODEL OF DNA) 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N L GLU 14 B GLU 25 HELX_P L LEU 14 B LEU 29 1 1 5 C G H PRO 60 C PRO 48 HELX_P H TRP 60 C TRP 50 5 2 3 B D H ARG 126 C ARG 123 HELX_P H LEU 129 C LEU 129 1 3 7 C H ARG 165 C ARG 170 HELX_P H ASP 170 C ASP 175 1 4 6 H PHE 232 C PHE 244 HELX_P H PHE 245 C PHE 257 5 5 14 disulf 2.009 L CYS 1 B SG CYS 9 1_555 H CYS 122 C SG CYS 119 1_555 disulf 2.087 H CYS 42 C SG CYS 28 1_555 H CYS 58 C SG CYS 44 1_555 disulf 1.998 H CYS 168 C SG CYS 173 1_555 H CYS 182 C SG CYS 187 1_555 disulf 2.038 H CYS 191 C SG CYS 201 1_555 H CYS 220 C SG CYS 231 1_555 covale 1.848 H SER 195 C OG SER 205 1_555 H 0G6 297 D C2 0G6 1_555 covale 1.940 H HIS 57 C NE2 HIS 43 1_555 H 0G6 297 D C3 0G6 1_555 hydrog TYPE_6_PAIR D DG 401 A N1 DG 1 1_555 D DG 415 A O6 DG 15 1_555 hydrog TYPE_6_PAIR D DG 401 A N2 DG 1 1_555 D DG 415 A N7 DG 15 1_555 hydrog DG-DG MISPAIR D DG 402 A N1 DG 2 1_555 D DG 405 A O6 DG 5 1_555 hydrog DG-DG MISPAIR D DG 402 A N7 DG 2 1_555 D DG 414 A N1 DG 14 1_555 hydrog TYPE_6_PAIR D DG 405 A N1 DG 5 1_555 D DG 411 A O6 DG 11 1_555 hydrog TYPE_6_PAIR D DG 405 A N2 DG 5 1_555 D DG 411 A N7 DG 11 1_555 hydrog TYPE_6_PAIR D DG 406 A N7 DG 6 1_555 D DG 410 A N2 DG 10 1_555 hydrog TYPE_6_PAIR D DG 406 A O6 DG 6 1_555 D DG 410 A N1 DG 10 1_555 hydrog DG-DG MISPAIR D DG 410 A N7 DG 10 1_555 D DG 415 A N1 DG 15 1_555 hydrog TYPE_6_PAIR D DG 411 A N1 DG 11 1_555 D DG 414 A O6 DG 14 1_555 hydrog TYPE_6_PAIR D DG 411 A N2 DG 11 1_555 D DG 414 A N7 DG 14 1_555 HYDROLASE/HYDROLASE INHIBITOR/DNA COAGULATION, QUADRUPLE HELIX, HYDROLASE-HYDROLASE INHIBITOR-DNA COMPLEX H SER 36 C SER 22 A 1 H PRO 37 C PRO 23 -2.34 THRB_HUMAN UNP 2 328 P00734 TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR THRB_HUMAN UNP 3 364 P00734 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE 1HAP PDB 1 1 1HAP GGTTGGTGTGGTTGG 328 363 1HAP 1 14 P00734 B K L 1 7 33 364 622 1HAP 16 247 P00734 H 2 1 259 401 415 1HAP 401 415 1HAP D 3 1 15 4 3 2 2 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel H LYS 81 C LYS 77 H SER 83 C SER 79 H LEU 64 C LEU 59 H ILE 68 C ILE 63 H GLN 30 C GLN 15 H ARG 35 C ARG 20 H GLU 39 C GLU 25 H SER 45 C SER 31 H TRP 51 C TRP 37 H THR 54 C THR 40 H ALA 104 C ALA 101 H LEU 108 C LEU 105 H LEU 85 C LEU 81 H ILE 90 C ILE 86 H LYS 135 C LYS 135 H THR 139 C THR 139 H VAL 157 C VAL 162 H PRO 161 C PRO 166 H MET 180 C MET 185 H ALA 183 C ALA 188 H GLY 226 C GLY 238 H THR 229 C THR 241 H PRO 198 C PRO 208 H SER 203 C SER 213 H ARG 206 C ARG 218 H ILE 212 C ILE 224 BINDING SITE FOR RESIDUE 0G6 H 297 Software 13 CATALYTIC SITE Author 3 H HIS 57 C HIS 43 13 1_555 H TYR 60 C TYR 47 A 13 1_555 H TRP 60 C TRP 50 D 13 1_555 H LEU 99 C LEU 96 13 1_555 H ASP 189 C ASP 199 13 1_555 H ALA 190 C ALA 200 13 1_555 H ASP 194 C ASP 204 13 1_555 H SER 195 C SER 205 13 1_555 H SER 214 C SER 226 13 1_555 H TRP 215 C TRP 227 13 1_555 H GLY 216 C GLY 228 13 1_555 H GLY 219 C GLY 230 13 1_555 H GLY 226 C GLY 238 13 1_555 H HIS 57 C HIS 43 3 1_555 H ASP 102 C ASP 99 3 1_555 H SER 195 C SER 205 3 1_555 19 P 21 21 21