0.017159
0.000000
0.000000
0.000000
0.012885
0.000000
0.000000
0.000000
0.009998
0.00000
0.00000
0.00000
Padmanabhan, K.
Tulinsky, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
58.280
77.610
100.020
C21 H34 Cl N6 O3 1
453.986
D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide
PPACK
peptide-like
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
52
272
282
10.1107/S0907444995013977
15299700
An ambiguous structure of a DNA 15-mer thrombin complex.
1996
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
268
17651
17654
The Structure of Alpha-Thrombin Inhibited by a 15-mer Single-Stranded DNA Aptamer
1993
THE BONDS OG SER H 195-C2 0G6 AND NE2 HIS H 57-C3 0G6 ARE OUTSIDE ACCEPTED RANGE
THE INTERACTIONS INVOLVING DT 407, DG 408, AND DT 413 ARE OUTSIDE ACCEPTED RANGE
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
x-ray
1
1.0
4743.051
5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3'
1
syn
polymer
4096.534
Thrombin light chain
3.4.21.5
residues 328-363
1
nat
polymer
29780.219
Thrombin heavy chain
3.4.21.5
residues 364-622
1
nat
polymer
453.986
D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide
1
syn
non-polymer
18.015
water
151
nat
water
Coagulation factor II
Coagulation factor II
no
no
(DG)(DG)(DT)(DT)(DG)(DG)(DT)(DG)(DT)(DG)(DG)(DT)(DT)(DG)(DG)
GGTTGGTGTGGTTGG
D
polydeoxyribonucleotide
no
no
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
L
polypeptide(L)
no
no
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
H
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
9606
Homo sapiens
human
Homo
sample
9606
Homo sapiens
2.89
57.37
repository
Initial release
Version format compliance
Atomic model
Database references
Derived calculations
Non-polymer description
Structure summary
Version format compliance
Other
1
0
1996-04-03
1
1
2008-05-22
1
2
2011-07-13
1
3
2013-02-27
Y
BNL
1995-10-03
REL
0G6
D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide
HOH
water
THE INHIBITOR IS BOUND TO THE ACTIVE SITE OF THE ENZYME.
THE UNBOUND FORM OF THE INHIBITOR IS D-PHE-PRO-ARG-CHLOROMETHYLKETONE. UPON REACTION WITH PROTEIN IT FORMS TWO COVALENT BONDS: 1) A COVALENT BOND TO SER 195 FORMING A HEMIKETAL AR7 AND 2) A COVALENT BOND TO NE2 OF HIS 57
CHYMOTRYPSIN NUMBERING SYSTEM IS USED FOR THROMBIN, BASED
ON THE TOPOLOGICAL ALIGNMENT WITH THE STRUCTURE OF
CHYMOTRYPSIN (BODE, W., ET AL., 1989, EMBO J. 8, 3467 -
3475).
Inhibitor
D-Phe-Pro-Arg-CH2Cl
Peptide-like
DPN
297
4
0G6
0G6
297
H
HOH
575
5
HOH
HOH
575
D
HOH
626
5
HOH
HOH
626
D
HOH
627
5
HOH
HOH
627
D
HOH
631
5
HOH
HOH
631
D
HOH
638
5
HOH
HOH
638
D
HOH
649
5
HOH
HOH
649
D
HOH
656
5
HOH
HOH
656
D
HOH
663
5
HOH
HOH
663
D
HOH
666
5
HOH
HOH
666
D
HOH
672
5
HOH
HOH
672
D
HOH
673
5
HOH
HOH
673
D
HOH
679
5
HOH
HOH
679
D
HOH
681
5
HOH
HOH
681
D
HOH
688
5
HOH
HOH
688
D
HOH
698
5
HOH
HOH
698
D
HOH
702
5
HOH
HOH
702
D
HOH
516
5
HOH
HOH
516
L
HOH
528
5
HOH
HOH
528
L
HOH
569
5
HOH
HOH
569
L
HOH
609
5
HOH
HOH
609
L
HOH
624
5
HOH
HOH
624
L
HOH
632
5
HOH
HOH
632
L
HOH
635
5
HOH
HOH
635
L
HOH
660
5
HOH
HOH
660
L
HOH
668
5
HOH
HOH
668
L
HOH
687
5
HOH
HOH
687
L
HOH
503
5
HOH
HOH
503
H
HOH
507
5
HOH
HOH
507
H
HOH
509
5
HOH
HOH
509
H
HOH
510
5
HOH
HOH
510
H
HOH
511
5
HOH
HOH
511
H
HOH
512
5
HOH
HOH
512
H
HOH
514
5
HOH
HOH
514
H
HOH
515
5
HOH
HOH
515
H
HOH
519
5
HOH
HOH
519
H
HOH
520
5
HOH
HOH
520
H
HOH
524
5
HOH
HOH
524
H
HOH
525
5
HOH
HOH
525
H
HOH
527
5
HOH
HOH
527
H
HOH
529
5
HOH
HOH
529
H
HOH
531
5
HOH
HOH
531
H
HOH
534
5
HOH
HOH
534
H
HOH
535
5
HOH
HOH
535
H
HOH
536
5
HOH
HOH
536
H
HOH
537
5
HOH
HOH
537
H
HOH
539
5
HOH
HOH
539
H
HOH
540
5
HOH
HOH
540
H
HOH
541
5
HOH
HOH
541
H
HOH
542
5
HOH
HOH
542
H
HOH
543
5
HOH
HOH
543
H
HOH
544
5
HOH
HOH
544
H
HOH
549
5
HOH
HOH
549
H
HOH
550
5
HOH
HOH
550
H
HOH
552
5
HOH
HOH
552
H
HOH
554
5
HOH
HOH
554
H
HOH
556
5
HOH
HOH
556
H
HOH
559
5
HOH
HOH
559
H
HOH
560
5
HOH
HOH
560
H
HOH
561
5
HOH
HOH
561
H
HOH
562
5
HOH
HOH
562
H
HOH
564
5
HOH
HOH
564
H
HOH
567
5
HOH
HOH
567
H
HOH
570
5
HOH
HOH
570
H
HOH
574
5
HOH
HOH
574
H
HOH
577
5
HOH
HOH
577
H
HOH
579
5
HOH
HOH
579
H
HOH
581
5
HOH
HOH
581
H
HOH
582
5
HOH
HOH
582
H
HOH
585
5
HOH
HOH
585
H
HOH
586
5
HOH
HOH
586
H
HOH
587
5
HOH
HOH
587
H
HOH
589
5
HOH
HOH
589
H
HOH
590
5
HOH
HOH
590
H
HOH
594
5
HOH
HOH
594
H
HOH
596
5
HOH
HOH
596
H
HOH
597
5
HOH
HOH
597
H
HOH
598
5
HOH
HOH
598
H
HOH
599
5
HOH
HOH
599
H
HOH
600
5
HOH
HOH
600
H
HOH
601
5
HOH
HOH
601
H
HOH
602
5
HOH
HOH
602
H
HOH
603
5
HOH
HOH
603
H
HOH
604
5
HOH
HOH
604
H
HOH
606
5
HOH
HOH
606
H
HOH
607
5
HOH
HOH
607
H
HOH
608
5
HOH
HOH
608
H
HOH
610
5
HOH
HOH
610
H
HOH
611
5
HOH
HOH
611
H
HOH
619
5
HOH
HOH
619
H
HOH
621
5
HOH
HOH
621
H
HOH
622
5
HOH
HOH
622
H
HOH
623
5
HOH
HOH
623
H
HOH
625
5
HOH
HOH
625
H
HOH
628
5
HOH
HOH
628
H
HOH
629
5
HOH
HOH
629
H
HOH
630
5
HOH
HOH
630
H
HOH
633
5
HOH
HOH
633
H
HOH
634
5
HOH
HOH
634
H
HOH
636
5
HOH
HOH
636
H
HOH
637
5
HOH
HOH
637
H
HOH
639
5
HOH
HOH
639
H
HOH
640
5
HOH
HOH
640
H
HOH
641
5
HOH
HOH
641
H
HOH
642
5
HOH
HOH
642
H
HOH
643
5
HOH
HOH
643
H
HOH
644
5
HOH
HOH
644
H
HOH
645
5
HOH
HOH
645
H
HOH
646
5
HOH
HOH
646
H
HOH
647
5
HOH
HOH
647
H
HOH
648
5
HOH
HOH
648
H
HOH
650
5
HOH
HOH
650
H
HOH
651
5
HOH
HOH
651
H
HOH
652
5
HOH
HOH
652
H
HOH
653
5
HOH
HOH
653
H
HOH
655
5
HOH
HOH
655
H
HOH
657
5
HOH
HOH
657
H
HOH
658
5
HOH
HOH
658
H
HOH
659
5
HOH
HOH
659
H
HOH
661
5
HOH
HOH
661
H
HOH
662
5
HOH
HOH
662
H
HOH
664
5
HOH
HOH
664
H
HOH
665
5
HOH
HOH
665
H
HOH
667
5
HOH
HOH
667
H
HOH
669
5
HOH
HOH
669
H
HOH
670
5
HOH
HOH
670
H
HOH
671
5
HOH
HOH
671
H
HOH
674
5
HOH
HOH
674
H
HOH
675
5
HOH
HOH
675
H
HOH
676
5
HOH
HOH
676
H
HOH
677
5
HOH
HOH
677
H
HOH
678
5
HOH
HOH
678
H
HOH
680
5
HOH
HOH
680
H
HOH
682
5
HOH
HOH
682
H
HOH
683
5
HOH
HOH
683
H
HOH
684
5
HOH
HOH
684
H
HOH
685
5
HOH
HOH
685
H
HOH
686
5
HOH
HOH
686
H
HOH
689
5
HOH
HOH
689
H
HOH
690
5
HOH
HOH
690
H
HOH
691
5
HOH
HOH
691
H
HOH
692
5
HOH
HOH
692
H
HOH
693
5
HOH
HOH
693
H
HOH
694
5
HOH
HOH
694
H
HOH
695
5
HOH
HOH
695
H
HOH
696
5
HOH
HOH
696
H
HOH
697
5
HOH
HOH
697
H
HOH
699
5
HOH
HOH
699
H
HOH
700
5
HOH
HOH
700
H
HOH
701
5
HOH
HOH
701
H
HOH
703
5
HOH
HOH
703
H
HOH
704
5
HOH
HOH
704
H
DG
401
n
1
DG
401
D
DG
402
n
2
DG
402
D
DT
403
n
3
DT
403
D
DT
404
n
4
DT
404
D
DG
405
n
5
DG
405
D
DG
406
n
6
DG
406
D
DT
407
n
7
DT
407
D
DG
408
n
8
DG
408
D
DT
409
n
9
DT
409
D
DG
410
n
10
DG
410
D
DG
411
n
11
DG
411
D
DT
412
n
12
DT
412
D
DT
413
n
13
DT
413
D
DG
414
n
14
DG
414
D
DG
415
n
15
DG
415
D
n
1
-5
L
n
2
-4
L
n
3
-3
L
n
4
-2
L
n
5
-1
L
n
6
0
L
ALA
1
n
7
B
ALA
1
L
ASP
1
n
8
A
ASP
1
L
CYS
1
n
9
CYS
1
L
GLY
2
n
10
GLY
2
L
LEU
3
n
11
LEU
3
L
ARG
4
n
12
ARG
4
L
PRO
5
n
13
PRO
5
L
LEU
6
n
14
LEU
6
L
PHE
7
n
15
PHE
7
L
GLU
8
n
16
GLU
8
L
LYS
9
n
17
LYS
9
L
LYS
10
n
18
LYS
10
L
SER
11
n
19
SER
11
L
LEU
12
n
20
LEU
12
L
GLU
13
n
21
GLU
13
L
ASP
14
n
22
ASP
14
L
LYS
14
n
23
A
LYS
14
L
THR
14
n
24
B
THR
14
L
GLU
14
n
25
C
GLU
14
L
ARG
14
n
26
D
ARG
14
L
GLU
14
n
27
E
GLU
14
L
LEU
14
n
28
F
LEU
14
L
LEU
14
n
29
G
LEU
14
L
GLU
14
n
30
H
GLU
14
L
SER
14
n
31
I
SER
14
L
TYR
14
n
32
J
TYR
14
L
ILE
14
n
33
K
ILE
14
L
n
34
15
L
n
35
16
L
n
36
17
L
ILE
16
n
1
ILE
16
H
VAL
17
n
2
VAL
17
H
GLU
18
n
3
GLU
18
H
GLY
19
n
4
GLY
19
H
SER
20
n
5
SER
20
H
ASP
21
n
6
ASP
21
H
ALA
22
n
7
ALA
22
H
GLU
23
n
8
GLU
23
H
ILE
24
n
9
ILE
24
H
GLY
25
n
10
GLY
25
H
MET
26
n
11
MET
26
H
SER
27
n
12
SER
27
H
PRO
28
n
13
PRO
28
H
TRP
29
n
14
TRP
29
H
GLN
30
n
15
GLN
30
H
VAL
31
n
16
VAL
31
H
MET
32
n
17
MET
32
H
LEU
33
n
18
LEU
33
H
PHE
34
n
19
PHE
34
H
ARG
35
n
20
ARG
35
H
LYS
36
n
21
LYS
36
H
SER
36
n
22
A
SER
36
H
PRO
37
n
23
PRO
37
H
GLN
38
n
24
GLN
38
H
GLU
39
n
25
GLU
39
H
LEU
40
n
26
LEU
40
H
LEU
41
n
27
LEU
41
H
CYS
42
n
28
CYS
42
H
GLY
43
n
29
GLY
43
H
ALA
44
n
30
ALA
44
H
SER
45
n
31
SER
45
H
LEU
46
n
32
LEU
46
H
ILE
47
n
33
ILE
47
H
SER
48
n
34
SER
48
H
ASP
49
n
35
ASP
49
H
ARG
50
n
36
ARG
50
H
TRP
51
n
37
TRP
51
H
VAL
52
n
38
VAL
52
H
LEU
53
n
39
LEU
53
H
THR
54
n
40
THR
54
H
ALA
55
n
41
ALA
55
H
ALA
56
n
42
ALA
56
H
HIS
57
n
43
HIS
57
H
CYS
58
n
44
CYS
58
H
LEU
59
n
45
LEU
59
H
LEU
60
n
46
LEU
60
H
TYR
60
n
47
A
TYR
60
H
PRO
60
n
48
B
PRO
60
H
PRO
60
n
49
C
PRO
60
H
TRP
60
n
50
D
TRP
60
H
ASP
60
n
51
E
ASP
60
H
LYS
60
n
52
F
LYS
60
H
ASN
60
n
53
G
ASN
60
H
PHE
60
n
54
H
PHE
60
H
THR
60
n
55
I
THR
60
H
GLU
61
n
56
GLU
61
H
ASN
62
n
57
ASN
62
H
ASP
63
n
58
ASP
63
H
LEU
64
n
59
LEU
64
H
LEU
65
n
60
LEU
65
H
VAL
66
n
61
VAL
66
H
ARG
67
n
62
ARG
67
H
ILE
68
n
63
ILE
68
H
GLY
69
n
64
GLY
69
H
LYS
70
n
65
LYS
70
H
HIS
71
n
66
HIS
71
H
SER
72
n
67
SER
72
H
ARG
73
n
68
ARG
73
H
THR
74
n
69
THR
74
H
ARG
75
n
70
ARG
75
H
TYR
76
n
71
TYR
76
H
GLU
77
n
72
GLU
77
H
ARG
77
n
73
A
ARG
77
H
ASN
78
n
74
ASN
78
H
ILE
79
n
75
ILE
79
H
GLU
80
n
76
GLU
80
H
LYS
81
n
77
LYS
81
H
ILE
82
n
78
ILE
82
H
SER
83
n
79
SER
83
H
MET
84
n
80
MET
84
H
LEU
85
n
81
LEU
85
H
GLU
86
n
82
GLU
86
H
LYS
87
n
83
LYS
87
H
ILE
88
n
84
ILE
88
H
TYR
89
n
85
TYR
89
H
ILE
90
n
86
ILE
90
H
HIS
91
n
87
HIS
91
H
PRO
92
n
88
PRO
92
H
ARG
93
n
89
ARG
93
H
TYR
94
n
90
TYR
94
H
ASN
95
n
91
ASN
95
H
TRP
96
n
92
TRP
96
H
ARG
97
n
93
ARG
97
H
GLU
97
n
94
A
GLU
97
H
ASN
98
n
95
ASN
98
H
LEU
99
n
96
LEU
99
H
ASP
100
n
97
ASP
100
H
ARG
101
n
98
ARG
101
H
ASP
102
n
99
ASP
102
H
ILE
103
n
100
ILE
103
H
ALA
104
n
101
ALA
104
H
LEU
105
n
102
LEU
105
H
MET
106
n
103
MET
106
H
LYS
107
n
104
LYS
107
H
LEU
108
n
105
LEU
108
H
LYS
109
n
106
LYS
109
H
LYS
110
n
107
LYS
110
H
PRO
111
n
108
PRO
111
H
VAL
112
n
109
VAL
112
H
ALA
113
n
110
ALA
113
H
PHE
114
n
111
PHE
114
H
SER
115
n
112
SER
115
H
ASP
116
n
113
ASP
116
H
TYR
117
n
114
TYR
117
H
ILE
118
n
115
ILE
118
H
HIS
119
n
116
HIS
119
H
PRO
120
n
117
PRO
120
H
VAL
121
n
118
VAL
121
H
CYS
122
n
119
CYS
122
H
LEU
123
n
120
LEU
123
H
PRO
124
n
121
PRO
124
H
ASP
125
n
122
ASP
125
H
ARG
126
n
123
ARG
126
H
GLU
127
n
124
GLU
127
H
THR
128
n
125
THR
128
H
ALA
129
n
126
ALA
129
H
ALA
129
n
127
A
ALA
129
H
SER
129
n
128
B
SER
129
H
LEU
129
n
129
C
LEU
129
H
LEU
130
n
130
LEU
130
H
GLN
131
n
131
GLN
131
H
ALA
132
n
132
ALA
132
H
GLY
133
n
133
GLY
133
H
TYR
134
n
134
TYR
134
H
LYS
135
n
135
LYS
135
H
GLY
136
n
136
GLY
136
H
ARG
137
n
137
ARG
137
H
VAL
138
n
138
VAL
138
H
THR
139
n
139
THR
139
H
GLY
140
n
140
GLY
140
H
TRP
141
n
141
TRP
141
H
GLY
142
n
142
GLY
142
H
ASN
143
n
143
ASN
143
H
LEU
144
n
144
LEU
144
H
LYS
145
n
145
LYS
145
H
GLU
146
n
146
GLU
146
H
THR
147
n
147
THR
147
H
TRP
148
n
148
TRP
148
H
n
149
A
148
H
n
150
B
148
H
n
151
C
148
H
n
152
D
148
H
n
153
E
148
H
n
154
F
148
H
GLY
150
n
155
GLY
150
H
GLN
151
n
156
GLN
151
H
PRO
152
n
157
PRO
152
H
SER
153
n
158
SER
153
H
VAL
154
n
159
VAL
154
H
LEU
155
n
160
LEU
155
H
GLN
156
n
161
GLN
156
H
VAL
157
n
162
VAL
157
H
VAL
158
n
163
VAL
158
H
ASN
159
n
164
ASN
159
H
LEU
160
n
165
LEU
160
H
PRO
161
n
166
PRO
161
H
ILE
162
n
167
ILE
162
H
VAL
163
n
168
VAL
163
H
GLU
164
n
169
GLU
164
H
ARG
165
n
170
ARG
165
H
PRO
166
n
171
PRO
166
H
VAL
167
n
172
VAL
167
H
CYS
168
n
173
CYS
168
H
LYS
169
n
174
LYS
169
H
ASP
170
n
175
ASP
170
H
SER
171
n
176
SER
171
H
THR
172
n
177
THR
172
H
ARG
173
n
178
ARG
173
H
ILE
174
n
179
ILE
174
H
ARG
175
n
180
ARG
175
H
ILE
176
n
181
ILE
176
H
THR
177
n
182
THR
177
H
ASP
178
n
183
ASP
178
H
ASN
179
n
184
ASN
179
H
MET
180
n
185
MET
180
H
PHE
181
n
186
PHE
181
H
CYS
182
n
187
CYS
182
H
ALA
183
n
188
ALA
183
H
GLY
184
n
189
GLY
184
H
TYR
184
n
190
A
TYR
184
H
LYS
185
n
191
LYS
185
H
PRO
186
n
192
PRO
186
H
ASP
186
n
193
A
ASP
186
H
GLU
186
n
194
B
GLU
186
H
GLY
186
n
195
C
GLY
186
H
LYS
186
n
196
D
LYS
186
H
ARG
187
n
197
ARG
187
H
GLY
188
n
198
GLY
188
H
ASP
189
n
199
ASP
189
H
ALA
190
n
200
ALA
190
H
CYS
191
n
201
CYS
191
H
GLU
192
n
202
GLU
192
H
GLY
193
n
203
GLY
193
H
ASP
194
n
204
ASP
194
H
SER
195
n
205
SER
195
H
GLY
196
n
206
GLY
196
H
GLY
197
n
207
GLY
197
H
PRO
198
n
208
PRO
198
H
PHE
199
n
209
PHE
199
H
VAL
200
n
210
VAL
200
H
MET
201
n
211
MET
201
H
LYS
202
n
212
LYS
202
H
SER
203
n
213
SER
203
H
PRO
204
n
214
PRO
204
H
PHE
204
n
215
A
PHE
204
H
ASN
204
n
216
B
ASN
204
H
ASN
205
n
217
ASN
205
H
ARG
206
n
218
ARG
206
H
TRP
207
n
219
TRP
207
H
TYR
208
n
220
TYR
208
H
GLN
209
n
221
GLN
209
H
MET
210
n
222
MET
210
H
GLY
211
n
223
GLY
211
H
ILE
212
n
224
ILE
212
H
VAL
213
n
225
VAL
213
H
SER
214
n
226
SER
214
H
TRP
215
n
227
TRP
215
H
GLY
216
n
228
GLY
216
H
GLU
217
n
229
GLU
217
H
GLY
219
n
230
GLY
219
H
CYS
220
n
231
CYS
220
H
ASP
221
n
232
ASP
221
H
ARG
221
n
233
A
ARG
221
H
ASP
222
n
234
ASP
222
H
GLY
223
n
235
GLY
223
H
LYS
224
n
236
LYS
224
H
TYR
225
n
237
TYR
225
H
GLY
226
n
238
GLY
226
H
PHE
227
n
239
PHE
227
H
TYR
228
n
240
TYR
228
H
THR
229
n
241
THR
229
H
HIS
230
n
242
HIS
230
H
VAL
231
n
243
VAL
231
H
PHE
232
n
244
PHE
232
H
ARG
233
n
245
ARG
233
H
LEU
234
n
246
LEU
234
H
LYS
235
n
247
LYS
235
H
LYS
236
n
248
LYS
236
H
TRP
237
n
249
TRP
237
H
ILE
238
n
250
ILE
238
H
GLN
239
n
251
GLN
239
H
LYS
240
n
252
LYS
240
H
VAL
241
n
253
VAL
241
H
ILE
242
n
254
ILE
242
H
ASP
243
n
255
ASP
243
H
GLN
244
n
256
GLN
244
H
PHE
245
n
257
PHE
245
H
GLY
246
n
258
GLY
246
H
GLU
247
n
259
GLU
247
H
author_defined_assembly
3
trimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
H
O
LYS
81
C
O
LYS
77
H
N
ILE
68
C
N
ILE
63
H
O
LEU
65
C
O
LEU
60
H
N
PHE
34
C
N
PHE
19
H
O
VAL
31
C
O
VAL
16
H
N
ALA
44
C
N
ALA
30
H
O
VAL
52
C
O
VAL
38
H
N
MET
106
C
N
MET
103
H
O
LEU
105
C
O
LEU
102
H
N
TYR
89
C
N
TYR
85
H
O
GLY
136
C
O
GLY
136
H
N
LEU
160
C
N
LEU
165
H
O
PHE
181
C
O
PHE
186
H
N
TYR
228
C
N
TYR
240
H
O
PHE
199
C
O
PHE
209
H
N
GLY
211
C
N
GLY
223
1
L
THR
-5
B
THR
1
1
Y
1
L
PHE
-4
B
PHE
2
1
Y
1
L
GLY
-3
B
GLY
3
1
Y
1
L
SER
-2
B
SER
4
1
Y
1
L
GLY
-1
B
GLY
5
1
Y
1
L
GLU
0
B
GLU
6
1
Y
1
L
ASP
15
B
ASP
34
1
Y
1
L
GLY
16
B
GLY
35
1
Y
1
L
ARG
17
B
ARG
36
1
Y
A
1
H
THR
148
C
THR
149
1
Y
B
1
H
ALA
148
C
ALA
150
1
Y
C
1
H
ASN
148
C
ASN
151
1
Y
D
1
H
VAL
148
C
VAL
152
1
Y
E
1
H
GLY
148
C
GLY
153
1
Y
F
1
H
LYS
148
C
LYS
154
1
Y
1
H
C2
0G6
297
PLANAR
1
D
H
C7
CG2
DT
ILE
407
24
0.93
1
D
H
O4'
NH2
DG
ARG
408
75
1.24
1
D
H
C4'
NH2
DG
ARG
408
75
1.49
1
D
H
C2'
NH2
DG
ARG
408
75
1.62
1
D
H
C1'
NH2
DG
ARG
408
75
1.66
1
D
H
C8
NE
DG
ARG
408
75
1.71
1
D
H
C7
CB
DT
ILE
407
24
1.74
1
H
H
OG
O2
SER
0G6
195
297
1.89
1
L
H
OE2
NZ
GLU
LYS
8
202
1.90
1
D
H
C5
CG2
DT
ILE
407
24
1.92
1
D
H
C3'
NH2
DG
ARG
408
75
1.95
1
D
D
N2
N7
DG
DG
402
405
1.96
1
D
H
C5'
NH1
DG
ARG
408
75
1.97
1
D
H
C5'
NH2
DG
ARG
408
75
2.01
1
D
D
O6
N1
DG
DG
402
414
2.04
1
H
H
CB
O2
SER
0G6
195
297
2.04
1
H
H
OD2
OE2
ASP
GLU
49
247
2.05
1
H
H
NE1
N
TRP
GLU
51
247
2.05
1
D
D
O5'
O4
DT
DT
407
409
2.05
1
H
H
O
N
MET
LYS
84
109
2.07
1
D
D
O4'
N3
DT
DT
407
409
2.09
1
D
H
O4'
CZ
DG
ARG
408
75
2.10
1
H
H
OG1
N
THR
ILE
172
174
2.15
1
H
H
N
OD2
CYS
ASP
191
194
2.18
1
H
H
N
OE2
HIS
GLU
71
77
2.18
H
1
H
PHE
60
13.06
1
H
ASN
78
-12.66
1
D
DG
401
0.057
SIDE CHAIN
D
1
L
ARG
14
0.123
SIDE CHAIN
1
17.33
2.50
111.00
128.33
D
D
D
O5'
C5'
C4'
DG
DG
DG
401
401
401
N
1
-4.93
0.40
104.50
99.57
D
D
D
O4'
C4'
C3'
DG
DG
DG
401
401
401
N
1
-9.82
0.80
109.40
99.58
D
D
D
O5'
C5'
C4'
DG
DG
DG
402
402
402
N
1
-11.19
1.60
120.90
109.71
D
D
D
P
O5'
C5'
DG
DG
DG
402
402
402
N
1
-6.28
1.00
110.10
103.82
D
D
D
C1'
O4'
C4'
DG
DG
DG
402
402
402
N
1
3.45
0.50
111.50
114.95
D
D
D
C5
C6
N1
DG
DG
DG
402
402
402
N
1
9.63
1.60
120.90
130.53
D
D
D
P
O5'
C5'
DT
DT
DT
403
403
403
N
1
13.52
2.00
112.30
125.82
D
D
D
C4'
C3'
O3'
DT
DT
DT
403
403
403
N
1
-4.79
0.70
102.20
97.41
D
D
D
C4'
C3'
C2'
DT
DT
DT
403
403
403
N
1
2.46
0.30
108.30
110.76
D
D
D
O4'
C1'
N1
DT
DT
DT
403
403
403
N
1
-4.59
0.60
127.20
122.61
D
D
D
C2
N3
C4
DT
DT
DT
403
403
403
N
1
3.68
0.60
115.20
118.88
D
D
D
N3
C4
C5
DT
DT
DT
403
403
403
N
1
8.47
1.20
119.70
128.17
D
D
D
C3'
O3'
P
DT
DT
DT
403
403
404
Y
1
16.16
1.90
104.00
120.16
D
D
D
O3'
P
O5'
DT
DT
DT
403
404
404
Y
1
16.24
1.20
115.70
131.94
D
D
D
C5'
C4'
C3'
DT
DT
DT
404
404
404
N
1
-17.10
1.90
109.30
92.20
D
D
D
C5'
C4'
O4'
DT
DT
DT
404
404
404
N
1
-6.64
1.00
110.10
103.46
D
D
D
C1'
O4'
C4'
DT
DT
DT
404
404
404
N
1
13.20
2.00
112.30
125.50
D
D
D
C4'
C3'
O3'
DT
DT
DT
404
404
404
N
1
3.44
0.30
108.30
111.74
D
D
D
O4'
C1'
N1
DT
DT
DT
404
404
404
N
1
-5.62
0.60
127.20
121.58
D
D
D
C2
N3
C4
DT
DT
DT
404
404
404
N
1
4.84
0.60
115.20
120.04
D
D
D
N3
C4
C5
DT
DT
DT
404
404
404
N
1
-6.26
0.60
122.30
116.04
D
D
D
N3
C2
O2
DT
DT
DT
404
404
404
N
1
-4.37
0.60
119.90
115.53
D
D
D
N3
C4
O4
DT
DT
DT
404
404
404
N
1
32.08
1.20
119.70
151.78
D
D
D
C3'
O3'
P
DT
DT
DG
404
404
405
Y
1
7.32
1.10
110.50
117.82
D
D
D
O3'
P
OP2
DT
DG
DG
404
405
405
Y
1
-10.22
1.50
119.60
109.38
D
D
D
OP1
P
OP2
DG
DG
DG
405
405
405
N
1
-6.73
0.80
102.40
95.67
D
D
D
C3'
C2'
C1'
DG
DG
DG
405
405
405
N
1
23.02
1.20
119.70
142.72
D
D
D
C3'
O3'
P
DG
DG
DG
405
405
406
Y
1
-10.61
1.50
119.60
108.99
D
D
D
OP1
P
OP2
DG
DG
DG
406
406
406
N
1
-8.79
0.80
102.40
93.61
D
D
D
C3'
C2'
C1'
DG
DG
DG
406
406
406
N
1
11.72
0.30
108.30
120.02
D
D
D
O4'
C1'
N9
DG
DG
DG
406
406
406
N
1
3.05
0.50
111.50
114.55
D
D
D
C5
C6
N1
DG
DG
DG
406
406
406
N
1
-6.58
0.80
102.40
95.82
D
D
D
C3'
C2'
C1'
DT
DT
DT
407
407
407
N
1
7.25
0.30
108.30
115.55
D
D
D
O4'
C1'
N1
DT
DT
DT
407
407
407
N
1
-4.78
0.60
127.20
122.42
D
D
D
C2
N3
C4
DT
DT
DT
407
407
407
N
1
3.71
0.60
115.20
118.91
D
D
D
N3
C4
C5
DT
DT
DT
407
407
407
N
1
-5.17
0.80
102.40
97.23
D
D
D
C3'
C2'
C1'
DG
DG
DG
408
408
408
N
1
6.74
0.30
108.30
115.04
D
D
D
O4'
C1'
N9
DG
DG
DG
408
408
408
N
1
10.12
1.20
119.70
129.82
D
D
D
C3'
O3'
P
DG
DG
DT
408
408
409
Y
1
-12.31
1.50
119.60
107.29
D
D
D
OP1
P
OP2
DT
DT
DT
409
409
409
N
1
4.13
0.30
108.30
112.43
D
D
D
O4'
C1'
N1
DT
DT
DT
409
409
409
N
1
3.78
0.60
114.60
118.38
D
D
D
N1
C2
N3
DT
DT
DT
409
409
409
N
1
-5.12
0.60
127.20
122.08
D
D
D
C2
N3
C4
DT
DT
DT
409
409
409
N
1
-4.68
0.60
119.90
115.22
D
D
D
N3
C4
O4
DT
DT
DT
409
409
409
N
1
8.80
1.20
119.70
128.50
D
D
D
C3'
O3'
P
DT
DT
DG
409
409
410
Y
1
-9.38
0.80
109.40
100.02
D
D
D
O5'
C5'
C4'
DG
DG
DG
410
410
410
N
1
7.94
1.20
110.70
118.64
D
D
D
O5'
P
OP1
DG
DG
DG
411
411
411
N
1
-6.18
0.80
109.40
103.22
D
D
D
O5'
C5'
C4'
DG
DG
DG
411
411
411
N
1
-7.27
1.00
110.10
102.83
D
D
D
C1'
O4'
C4'
DG
DG
DG
411
411
411
N
1
-8.99
0.80
102.40
93.41
D
D
D
C3'
C2'
C1'
DG
DG
DG
411
411
411
N
1
-6.29
0.80
105.90
99.61
D
D
D
O4'
C1'
C2'
DG
DG
DG
411
411
411
N
1
9.00
0.30
108.30
117.30
D
D
D
O4'
C1'
N9
DG
DG
DG
411
411
411
N
1
-9.02
1.50
119.60
110.58
D
D
D
OP1
P
OP2
DT
DT
DT
412
412
412
N
1
5.72
0.30
108.30
114.02
D
D
D
O4'
C1'
N1
DT
DT
DT
412
412
412
N
1
-4.67
0.60
127.20
122.53
D
D
D
C2
N3
C4
DT
DT
DT
412
412
412
N
1
3.80
0.60
115.20
119.00
D
D
D
N3
C4
C5
DT
DT
DT
412
412
412
N
1
12.67
1.20
119.70
132.37
D
D
D
C3'
O3'
P
DT
DT
DT
412
412
413
Y
1
14.35
1.60
120.90
135.25
D
D
D
P
O5'
C5'
DT
DT
DT
413
413
413
N
1
7.29
0.30
108.30
115.59
D
D
D
O4'
C1'
N1
DT
DT
DT
413
413
413
N
1
3.92
0.60
114.60
118.52
D
D
D
N1
C2
N3
DT
DT
DT
413
413
413
N
1
-5.72
0.60
127.20
121.48
D
D
D
C2
N3
C4
DT
DT
DT
413
413
413
N
1
4.41
0.60
115.20
119.61
D
D
D
N3
C4
C5
DT
DT
DT
413
413
413
N
1
-11.94
1.50
119.60
107.66
D
D
D
OP1
P
OP2
DG
DG
DG
414
414
414
N
1
19.49
1.60
120.90
140.39
D
D
D
P
O5'
C5'
DG
DG
DG
414
414
414
N
1
-4.34
0.70
102.20
97.86
D
D
D
C4'
C3'
C2'
DG
DG
DG
414
414
414
N
1
3.67
0.30
108.30
111.97
D
D
D
O4'
C1'
N9
DG
DG
DG
414
414
414
N
1
3.07
0.50
111.50
114.57
D
D
D
C5
C6
N1
DG
DG
DG
414
414
414
N
1
12.28
1.90
104.00
116.28
D
D
D
O3'
P
O5'
DG
DG
DG
414
415
415
Y
1
15.04
1.60
120.90
135.94
D
D
D
P
O5'
C5'
DG
DG
DG
415
415
415
N
1
7.22
0.30
108.30
115.52
D
D
D
O4'
C1'
N9
DG
DG
DG
415
415
415
N
1
-4.52
0.60
119.90
115.38
D
D
D
N1
C6
O6
DG
DG
DG
415
415
415
N
A
A
A
1
-8.76
0.90
118.30
109.54
L
L
L
CB
CG
OD2
ASP
ASP
ASP
1
1
1
N
1
11.71
1.20
123.30
135.01
L
L
L
OE1
CD
OE2
GLU
GLU
GLU
13
13
13
N
B
B
B
1
-11.77
1.90
110.30
98.53
L
L
L
N
CA
CB
THR
THR
THR
14
14
14
N
C
C
C
1
13.11
1.20
123.30
136.41
L
L
L
OE1
CD
OE2
GLU
GLU
GLU
14
14
14
N
G
G
G
1
16.76
1.90
110.20
126.96
L
L
L
CB
CA
C
LEU
LEU
LEU
14
14
14
N
I
I
I
1
-13.17
1.50
110.50
97.33
L
L
L
N
CA
CB
SER
SER
SER
14
14
14
N
1
15.62
2.50
121.70
137.32
H
H
H
C
N
CA
VAL
GLU
GLU
17
18
18
Y
1
12.64
1.80
110.60
123.24
H
H
H
N
CA
CB
GLU
GLU
GLU
18
18
18
N
1
-8.72
0.90
118.30
109.58
H
H
H
CB
CG
OD2
ASP
ASP
ASP
21
21
21
N
1
14.05
2.20
113.40
127.45
H
H
H
CA
CB
CG
GLU
GLU
GLU
23
23
23
N
1
11.46
1.60
122.70
134.16
H
H
H
O
C
N
VAL
VAL
MET
31
31
32
Y
1
14.03
1.90
110.20
124.23
H
H
H
CB
CA
C
LEU
LEU
LEU
33
33
33
N
1
15.85
1.40
123.60
139.45
H
H
H
CD
NE
CZ
ARG
ARG
ARG
35
35
35
N
1
4.64
0.50
120.30
124.94
H
H
H
NE
CZ
NH1
ARG
ARG
ARG
35
35
35
N
1
-3.56
0.50
120.30
116.74
H
H
H
NE
CZ
NH2
ARG
ARG
ARG
35
35
35
N
1
13.96
1.90
110.20
124.16
H
H
H
CB
CA
C
LEU
LEU
LEU
41
41
41
N
1
10.41
1.50
110.10
120.51
H
H
H
CB
CA
C
ALA
ALA
ALA
55
55
55
N
1
-9.23
1.40
110.10
100.87
H
H
H
N
CA
CB
ALA
ALA
ALA
55
55
55
N
1
12.87
2.00
118.30
131.17
H
H
H
CG
CD
OE1
GLU
GLU
GLU
61
61
61
N
1
5.98
0.90
118.30
124.28
H
H
H
CB
CG
OD2
ASP
ASP
ASP
63
63
63
N
1
15.79
2.30
115.30
131.09
H
H
H
CA
CB
CG
LEU
LEU
LEU
65
65
65
N
1
3.51
0.50
120.30
123.81
H
H
H
NE
CZ
NH2
ARG
ARG
ARG
73
73
73
N
1
-16.21
2.70
111.60
95.39
H
H
H
CB
CA
C
THR
THR
THR
74
74
74
N
A
A
A
1
3.90
0.50
120.30
124.20
H
H
H
NE
CZ
NH1
ARG
ARG
ARG
77
77
77
N
1
9.62
1.20
123.30
132.92
H
H
H
OE1
CD
OE2
GLU
GLU
GLU
80
80
80
N
1
15.85
2.50
121.70
137.55
H
H
H
C
N
CA
SER
MET
MET
83
84
84
Y
1
-3.89
0.60
121.00
117.11
H
H
H
CB
CG
CD1
TYR
TYR
TYR
89
89
89
N
1
4.32
0.50
120.30
124.62
H
H
H
NE
CZ
NH2
ARG
ARG
ARG
93
93
93
N
1
3.32
0.50
120.30
123.62
H
H
H
NE
CZ
NH2
ARG
ARG
ARG
97
97
97
N
1
3.61
0.50
120.30
123.91
H
H
H
NE
CZ
NH2
ARG
ARG
ARG
101
101
101
N
1
9.96
1.60
122.70
132.66
H
H
H
O
C
N
ARG
ARG
ASP
101
101
102
Y
1
6.06
0.90
118.30
124.36
H
H
H
CB
CG
OD2
ASP
ASP
ASP
116
116
116
N
1
9.88
1.60
122.70
132.58
H
H
H
O
C
N
CYS
CYS
LEU
122
122
123
Y
1
13.46
2.20
113.40
126.86
H
H
H
CA
CB
CG
ARG
ARG
ARG
137
137
137
N
1
11.49
1.40
123.60
135.09
H
H
H
CD
NE
CZ
ARG
ARG
ARG
137
137
137
N
1
8.70
0.50
120.30
129.00
H
H
H
NE
CZ
NH1
ARG
ARG
ARG
137
137
137
N
1
12.67
1.90
110.20
122.87
H
H
H
CB
CA
C
LEU
LEU
LEU
144
144
144
N
1
11.51
1.80
110.60
122.11
H
H
H
N
CA
CB
GLN
GLN
GLN
151
151
151
N
1
10.35
1.60
122.70
133.05
H
H
H
O
C
N
GLN
GLN
VAL
156
156
157
Y
1
14.40
1.90
121.10
135.50
H
H
H
O
C
N
LEU
LEU
PRO
160
160
161
Y
1
3.80
0.50
120.30
124.10
H
H
H
NE
CZ
NH1
ARG
ARG
ARG
165
165
165
N
1
-4.70
0.50
120.30
115.60
H
H
H
NE
CZ
NH2
ARG
ARG
ARG
165
165
165
N
1
-14.95
2.20
113.40
98.45
H
H
H
CA
CB
CG
ASP
ASP
ASP
170
170
170
N
1
-3.82
0.50
120.30
116.48
H
H
H
NE
CZ
NH1
ARG
ARG
ARG
173
173
173
N
1
3.19
0.50
120.30
123.49
H
H
H
NE
CZ
NH2
ARG
ARG
ARG
175
175
175
N
1
15.99
1.10
114.20
130.19
H
H
H
CA
CB
SG
CYS
CYS
CYS
182
182
182
N
A
A
1
15.60
2.50
121.70
137.30
H
H
H
C
N
CA
PRO
ASP
ASP
186
186
186
Y
1
-11.81
0.90
118.30
106.49
H
H
H
CB
CG
OD1
ASP
ASP
ASP
194
194
194
N
1
8.85
0.90
118.30
127.15
H
H
H
CB
CG
OD2
ASP
ASP
ASP
194
194
194
N
A
A
A
1
-5.16
0.70
120.80
115.64
H
H
H
CB
CG
CD1
PHE
PHE
PHE
204
204
204
N
1
10.60
1.40
123.60
134.20
H
H
H
CD
NE
CZ
ARG
ARG
ARG
206
206
206
N
1
-7.25
1.10
119.40
112.15
H
H
H
NH1
CZ
NH2
ARG
ARG
ARG
206
206
206
N
1
3.93
0.50
120.30
124.23
H
H
H
NE
CZ
NH1
ARG
ARG
ARG
206
206
206
N
1
3.02
0.50
120.30
123.32
H
H
H
NE
CZ
NH2
ARG
ARG
ARG
206
206
206
N
1
10.43
1.60
122.70
133.13
H
H
H
O
C
N
TRP
TRP
TYR
207
207
208
Y
1
13.27
2.10
122.30
135.57
H
H
H
C
N
CA
TRP
GLY
GLY
215
216
216
Y
A
A
1
13.08
1.60
122.70
135.78
H
H
H
O
C
N
ARG
ARG
ASP
221
221
222
Y
1
7.20
0.90
118.30
125.50
H
H
H
CB
CG
OD1
ASP
ASP
ASP
222
222
222
N
1
-12.00
2.00
110.40
98.40
H
H
H
CB
CA
C
PHE
PHE
PHE
232
232
232
N
1
11.05
1.60
122.70
133.75
H
H
H
O
C
N
ILE
ILE
ASP
242
242
243
Y
1
-8.88
1.20
123.30
114.42
H
H
H
OE1
CD
OE2
GLU
GLU
GLU
247
247
247
N
1
D
D
O4'
C1'
DG
DG
401
401
0.071
0.011
1.420
1.491
N
1
D
H
OP2
NH1
DT
ARG
413
101
1.15
1_555
2_564
1
D
H
P
NH1
DT
ARG
413
101
1.50
1_555
2_564
1
D
H
C5'
NE
DT
ARG
413
101
1.58
1_555
2_564
1
D
H
O5'
NH1
DT
ARG
413
101
1.72
1_555
2_564
1
D
H
C5'
CZ
DT
ARG
413
101
1.80
1_555
2_564
1
D
H
C5'
CD
DT
ARG
413
101
1.84
1_555
2_564
1
D
H
O5'
CZ
DT
ARG
413
101
2.08
1_555
2_564
1
D
H
C5'
NH1
DT
ARG
413
101
2.15
1_555
2_564
A
1
L
ASP
1
-104.07
62.21
1
L
PHE
7
-122.38
-75.02
J
1
L
TYR
14
-49.63
-9.08
1
H
SER
27
-158.27
78.97
1
H
LYS
36
-78.43
-70.74
1
H
GLN
38
-61.17
91.17
1
H
SER
48
177.48
155.74
1
H
ASP
49
-39.91
-15.11
1
H
ARG
50
-134.79
-34.60
1
H
HIS
57
-54.53
-3.77
E
1
H
ASP
60
86.13
17.88
G
1
H
ASN
60
-157.25
75.06
1
H
GLU
61
-29.36
-32.20
1
H
HIS
71
-153.24
-74.99
1
H
GLU
77
-58.61
85.68
A
1
H
ARG
77
-29.50
-42.84
1
H
ILE
79
-120.90
-50.35
1
H
ARG
93
-79.23
22.36
A
1
H
GLU
97
-90.62
-61.77
1
H
ASN
98
-159.20
11.06
1
H
ARG
101
39.85
60.36
1
H
LYS
109
-63.15
-71.73
1
H
LEU
130
-67.55
92.30
1
H
TRP
141
-81.27
47.85
1
H
ARG
165
-26.18
-51.07
B
1
H
GLU
186
-49.43
-2.81
D
1
H
LYS
186
-172.42
143.94
1
H
ASP
189
178.39
164.07
1
H
GLU
192
-52.11
103.58
1
H
SER
195
-29.62
135.50
1
H
PRO
204
-97.66
34.81
B
1
H
ASN
204
-141.96
-6.51
1
H
SER
214
-124.73
-56.11
1
H
TRP
215
-163.18
-156.89
1
H
ASP
221
71.22
52.05
1
H
HIS
230
-67.12
83.27
1
H
PHE
232
-33.90
-76.94
1
H
ARG
233
-27.72
-29.86
1
H
ASP
243
-92.94
37.02
1
H
GLN
244
-149.12
-32.32
1
H
PHE
245
-170.95
25.80
0.161
2.800
10.000
7717
68.000
1
2.000
2.800
10.000
151
2771
30
315
2275
2.500
15.000
1HAP
9225
1.000
1
57.000
refinement
NUCLIN
refinement
PROLSQ
ALPHA-THROMBIN (E.C.3.4.21.5)/DNA COMPLEX + D-PHE-PRO-ARG-CHLOROMETHYLKETONE (PPACK)
COMPLEX OF HUMAN ALPHA-THROMBIN WITH A 15MER OLIGONUCLEOTIDE GGTTGGTGTGGTTGG (BASED ON X-RAY MODEL OF DNA)
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
L
GLU
14
B
GLU
25
HELX_P
L
LEU
14
B
LEU
29
1
1
5
C
G
H
PRO
60
C
PRO
48
HELX_P
H
TRP
60
C
TRP
50
5
2
3
B
D
H
ARG
126
C
ARG
123
HELX_P
H
LEU
129
C
LEU
129
1
3
7
C
H
ARG
165
C
ARG
170
HELX_P
H
ASP
170
C
ASP
175
1
4
6
H
PHE
232
C
PHE
244
HELX_P
H
PHE
245
C
PHE
257
5
5
14
disulf
2.009
L
CYS
1
B
SG
CYS
9
1_555
H
CYS
122
C
SG
CYS
119
1_555
disulf
2.087
H
CYS
42
C
SG
CYS
28
1_555
H
CYS
58
C
SG
CYS
44
1_555
disulf
1.998
H
CYS
168
C
SG
CYS
173
1_555
H
CYS
182
C
SG
CYS
187
1_555
disulf
2.038
H
CYS
191
C
SG
CYS
201
1_555
H
CYS
220
C
SG
CYS
231
1_555
covale
1.848
H
SER
195
C
OG
SER
205
1_555
H
0G6
297
D
C2
0G6
1_555
covale
1.940
H
HIS
57
C
NE2
HIS
43
1_555
H
0G6
297
D
C3
0G6
1_555
hydrog
TYPE_6_PAIR
D
DG
401
A
N1
DG
1
1_555
D
DG
415
A
O6
DG
15
1_555
hydrog
TYPE_6_PAIR
D
DG
401
A
N2
DG
1
1_555
D
DG
415
A
N7
DG
15
1_555
hydrog
DG-DG MISPAIR
D
DG
402
A
N1
DG
2
1_555
D
DG
405
A
O6
DG
5
1_555
hydrog
DG-DG MISPAIR
D
DG
402
A
N7
DG
2
1_555
D
DG
414
A
N1
DG
14
1_555
hydrog
TYPE_6_PAIR
D
DG
405
A
N1
DG
5
1_555
D
DG
411
A
O6
DG
11
1_555
hydrog
TYPE_6_PAIR
D
DG
405
A
N2
DG
5
1_555
D
DG
411
A
N7
DG
11
1_555
hydrog
TYPE_6_PAIR
D
DG
406
A
N7
DG
6
1_555
D
DG
410
A
N2
DG
10
1_555
hydrog
TYPE_6_PAIR
D
DG
406
A
O6
DG
6
1_555
D
DG
410
A
N1
DG
10
1_555
hydrog
DG-DG MISPAIR
D
DG
410
A
N7
DG
10
1_555
D
DG
415
A
N1
DG
15
1_555
hydrog
TYPE_6_PAIR
D
DG
411
A
N1
DG
11
1_555
D
DG
414
A
O6
DG
14
1_555
hydrog
TYPE_6_PAIR
D
DG
411
A
N2
DG
11
1_555
D
DG
414
A
N7
DG
14
1_555
HYDROLASE/HYDROLASE INHIBITOR/DNA
COAGULATION, QUADRUPLE HELIX, HYDROLASE-HYDROLASE INHIBITOR-DNA COMPLEX
H
SER
36
C
SER
22
A
1
H
PRO
37
C
PRO
23
-2.34
THRB_HUMAN
UNP
2
328
P00734
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
THRB_HUMAN
UNP
3
364
P00734
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
1HAP
PDB
1
1
1HAP
GGTTGGTGTGGTTGG
328
363
1HAP
1
14
P00734
B
K
L
1
7
33
364
622
1HAP
16
247
P00734
H
2
1
259
401
415
1HAP
401
415
1HAP
D
3
1
15
4
3
2
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
H
LYS
81
C
LYS
77
H
SER
83
C
SER
79
H
LEU
64
C
LEU
59
H
ILE
68
C
ILE
63
H
GLN
30
C
GLN
15
H
ARG
35
C
ARG
20
H
GLU
39
C
GLU
25
H
SER
45
C
SER
31
H
TRP
51
C
TRP
37
H
THR
54
C
THR
40
H
ALA
104
C
ALA
101
H
LEU
108
C
LEU
105
H
LEU
85
C
LEU
81
H
ILE
90
C
ILE
86
H
LYS
135
C
LYS
135
H
THR
139
C
THR
139
H
VAL
157
C
VAL
162
H
PRO
161
C
PRO
166
H
MET
180
C
MET
185
H
ALA
183
C
ALA
188
H
GLY
226
C
GLY
238
H
THR
229
C
THR
241
H
PRO
198
C
PRO
208
H
SER
203
C
SER
213
H
ARG
206
C
ARG
218
H
ILE
212
C
ILE
224
BINDING SITE FOR RESIDUE 0G6 H 297
Software
13
CATALYTIC SITE
Author
3
H
HIS
57
C
HIS
43
13
1_555
H
TYR
60
C
TYR
47
A
13
1_555
H
TRP
60
C
TRP
50
D
13
1_555
H
LEU
99
C
LEU
96
13
1_555
H
ASP
189
C
ASP
199
13
1_555
H
ALA
190
C
ALA
200
13
1_555
H
ASP
194
C
ASP
204
13
1_555
H
SER
195
C
SER
205
13
1_555
H
SER
214
C
SER
226
13
1_555
H
TRP
215
C
TRP
227
13
1_555
H
GLY
216
C
GLY
228
13
1_555
H
GLY
219
C
GLY
230
13
1_555
H
GLY
226
C
GLY
238
13
1_555
H
HIS
57
C
HIS
43
3
1_555
H
ASP
102
C
ASP
99
3
1_555
H
SER
195
C
SER
205
3
1_555
19
P 21 21 21