0.006637
0.000000
0.000000
0.000000
0.006637
0.000000
0.000000
0.000000
0.015664
0.00000
0.00000
0.00000
Conn, G.L.
Draper, D.E.
Lattman, E.E.
Gittis, A.G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
150.675
150.675
63.841
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C10 H16 N5 O14 P3
523.180
n
GUANOSINE-5'-TRIPHOSPHATE
non-polymer
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
K 1
39.098
POTASSIUM ION
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
Os 3
190.230
OSMIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
318
963
10.1016/S0022-2836(02)00147-X
12054794
A Compact RNA Tertiary Structure Contains a Buried Backbone-K+ Complex
2002
US
Science
SCIEAS
0038
0036-8075
284
1171
10.1126/SCIENCE.284.5417.1171
10325228
Crystal Structure of a Conserved Ribosomal Protein-RNA Complex
1999
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
IMAGE PLATE
1998-09-09
RIGAKU IMAGE PLATE
SINGLE WAVELENGTH
M
x-ray
1
1.13951
1.0
X4A
NSLS
1.13951
SYNCHROTRON
NSLS BEAMLINE X4A
8167.547
RIBOSOMAL PROTEIN L11
C-TERMINAL DOMAIN OF RIBOSOMAL PROTEIN L11
2
man
polymer
18885.150
58 NUCLEOTIDE RIBOSOMAL 23S RNA DOMAIN
NTS 1051-1108 FROM E. COLI 23S RRNA
YES
2
man
polymer
24.305
MAGNESIUM ION
21
syn
non-polymer
39.098
POTASSIUM ION
2
syn
non-polymer
190.230
OSMIUM ION
4
syn
non-polymer
18.015
water
13
nat
water
no
no
FTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMIEGTARSMGIVVEN
FTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMIEGTARSMGIVVEN
A,B
polypeptide(L)
no
yes
(GTP)CCAGGAUGUAGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGCGUAAUAGCUCACUGGU
GCCAGGAUGUAGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGCGUAAUAGCUCACUGGU
C,D
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1422
BACILLUS STEAROTHERMOPHILUS
469008
ESCHERICHIA COLI
BL21(DE3)
PLASMID
PET11
sample
RNA SYNTHESIZED BY IN VITRO TRANSCRIPTION USING T7 RNA POLYMERASE
562
ESCHERICHIA COLI
562
ESCHERICHIA COLI
1
3.35
70
6.50
PEG 600, MAGNESIUM ACETATE, COBALT HEXAMINE CHLORIDE, SODIUM CACODYLATE, KCL, pH 6.50
-7.297
1
28
C
101
C
158
-3.420
C_GTP101:U158_C
1
-10.846
-2.354
0.175
-0.581
-0.145
1
19
C
102
C
157
4.280
C_C102:G157_C
2
-17.423
0.264
0.528
-0.071
0.158
1
19
C
103
C
156
-0.490
C_C103:G156_C
3
-6.958
0.190
-0.331
-0.290
-0.042
1
20
C
104
C
155
3.841
C_A104:U155_C
4
1.250
-0.245
0.145
0.063
-6.877
1
19
C
105
C
154
4.609
C_G105:C154_C
5
-14.412
-0.312
-0.355
0.074
-11.947
10
11
C
106
C
153
-7.499
C_G106:A153_C
6
-12.180
6.690
-0.086
-4.256
-2.857
1
19
C
137
C
152
3.582
C_G137:C152_C
7
-3.826
0.443
-0.253
0.024
-19.227
1
20
C
140
C
151
7.149
C_A140:U151_C
8
-0.914
-0.434
-0.439
-0.143
-7.898
1
19
C
141
C
150
3.396
C_G141:C150_C
9
2.587
-0.329
-0.313
-0.121
4.661
1
19
C
142
C
149
-3.775
C_C142:G149_C
10
1.289
0.578
-0.361
-0.392
-5.169
10
11
C
143
C
148
-4.481
C_G143:A148_C
11
7.505
6.643
-0.475
-4.073
10.424
2
21
C
136
C
132
174.500
C_A136:U132_C
12
-7.410
0.231
0.038
1.135
6.915
1
20
C
107
C
131
0.363
C_A107:U131_C
13
-22.759
0.510
-0.156
-0.220
-4.422
1
20
C
108
C
130
1.783
C_U108:A130_C
14
-10.441
-0.241
-0.281
-0.260
0.112
1
19
C
109
C
129
-2.541
C_G109:C129_C
15
3.163
-0.071
0.357
-0.122
-8.518
3
23
C
110
C
138
-69.657
C_U110:A138_C
16
5.715
-1.091
0.447
3.815
8.631
1
19
C
112
C
126
-10.180
C_G112:C126_C
17
-5.198
-0.381
0.418
-0.075
3.214
1
19
C
113
C
125
4.187
C_G113:C125_C
18
-15.253
-0.574
0.403
-0.052
-1.275
1
19
C
114
C
124
5.368
C_C114:G124_C
19
-19.118
0.129
-0.031
-0.062
-12.668
C
115
C
123
-2.534
C_U115:A123_C
20
-9.566
5.148
0.061
-0.961
-2.723
1
28
D
301
D
358
-3.363
D_GTP301:U358_D
21
-7.871
-2.404
0.334
-0.727
2.328
1
19
D
302
D
357
-1.358
D_C302:G357_D
22
-16.912
0.658
0.086
-0.423
-4.621
1
19
D
303
D
356
-1.394
D_C303:G356_D
23
-11.515
-0.068
-0.054
-0.155
-2.424
1
20
D
304
D
355
6.201
D_A304:U355_D
24
-4.175
0.115
0.225
0.077
0.513
1
19
D
305
D
354
1.416
D_G305:C354_D
25
-7.318
-0.303
0.098
-0.063
-15.121
10
11
D
306
D
353
-4.142
D_G306:A353_D
26
-8.872
6.917
0.015
-4.190
-3.986
1
19
D
337
D
352
1.929
D_G337:C352_D
27
-4.681
0.084
-0.326
-0.056
-11.608
1
20
D
340
D
351
5.131
D_A340:U351_D
28
-2.723
-0.414
-0.306
-0.309
-1.938
1
19
D
341
D
350
-0.164
D_G341:C350_D
29
8.903
0.071
-0.504
-0.197
7.777
1
19
D
342
D
349
-0.382
D_C342:G349_D
30
2.290
0.469
-0.570
-0.189
-6.194
10
11
D
343
D
348
-7.208
D_G343:A348_D
31
3.361
6.862
-0.088
-4.023
10.295
2
21
D
336
D
332
175.896
D_A336:U332_D
32
-4.364
0.134
-0.206
1.453
8.860
1
20
D
307
D
331
-0.199
D_A307:U331_D
33
-17.530
0.179
0.242
-0.110
-10.589
1
20
D
308
D
330
-4.158
D_U308:A330_D
34
-13.147
0.265
0.018
-0.231
-2.043
1
19
D
309
D
329
-0.188
D_G309:C329_D
35
-6.095
0.127
0.216
-0.051
-8.468
3
23
D
310
D
338
-66.401
D_U310:A338_D
36
9.232
-0.755
0.848
3.841
10.330
1
19
D
312
D
326
-9.417
D_G312:C326_D
37
-1.456
-0.011
0.642
-0.101
0.405
1
19
D
313
D
325
4.083
D_G313:C325_D
38
-24.136
-0.039
-0.010
-0.121
-1.497
1
19
D
314
D
324
6.579
D_C314:G324_D
39
-26.426
0.465
0.114
-0.143
-10.167
D
315
D
323
2.556
D_U315:A323_D
40
-9.525
5.554
0.114
-1.163
2.919
42.397
C
C
101
102
4.489
C
C
158
157
3.024
3.241
-0.076
-1.311
CC_GTP101C102:G157U158_CC
1
-2.637
3.651
42.200
-2.114
-0.140
2.375
33.284
C
C
102
103
15.727
C
C
157
156
3.051
8.880
-0.585
-1.817
CC_C102C103:G156G157_CC
2
4.312
-7.637
31.826
-4.431
1.633
2.844
27.731
C
C
103
104
10.276
C
C
156
155
3.295
4.892
0.733
-1.809
CC_C103A104:U155G156_CC
3
-2.772
5.822
27.166
-4.894
-2.165
2.323
30.832
C
C
104
105
27.051
C
C
155
154
3.484
13.822
0.659
-1.957
CC_A104G105:C154U155_CC
4
5.044
-9.872
27.170
-6.232
-0.310
3.522
69.940
C
C
105
106
10.227
C
C
154
153
3.706
11.676
-0.418
-0.809
CC_G105G106:A153C154_CC
5
4.057
-3.554
68.976
-1.170
0.526
2.507
44.152
C
C
106
137
2.102
C
C
153
152
3.234
1.567
-3.092
1.373
CC_G106G137:C152A153_CC
6
10.346
-13.883
42.954
1.696
4.978
3.476
44.198
C
C
137
140
4.830
C
C
152
151
3.802
3.629
-1.981
-2.639
CC_G137A140:U151C152_CC
7
2.434
-3.239
43.993
-3.886
2.887
3.151
23.690
C
C
140
141
-0.710
C
C
151
150
3.144
-0.291
-0.753
-2.480
CC_A140G141:C150U151_CC
8
0.689
-1.678
23.679
-5.948
2.055
3.017
33.750
C
C
141
142
0.486
C
C
150
149
3.046
0.282
-0.322
-2.096
CC_G141C142:G149C150_CC
9
1.129
-1.945
33.731
-3.653
0.724
3.629
54.961
C
C
142
143
2.002
C
C
149
148
3.676
1.847
0.250
-1.731
CC_C142G143:A148G149_CC
10
2.895
-3.139
54.862
-1.998
-0.079
1.317
177.044
C
C
136
107
-75.133
C
C
132
131
1.081
-149.791
-2.663
-2.479
CC_A136A107:U131U132_CC
11
83.983
-42.125
138.090
-1.047
1.440
2.918
35.997
C
C
107
108
12.338
C
C
131
130
3.362
7.568
-0.411
-1.918
CC_A107U108:A130U131_CC
12
-1.993
3.250
35.164
-4.150
0.389
2.780
29.600
C
C
108
109
14.168
C
C
130
129
3.265
7.160
-1.099
-2.005
CC_U108G109:C129A130_CC
13
-2.637
5.218
28.621
-5.349
1.627
-2.083
177.784
C
C
109
110
84.827
C
C
129
138
-2.003
169.386
-3.178
-0.164
CC_G109U110:A138C129_CC
14
22.173
-11.104
152.004
0.166
1.557
2.926
35.727
C
C
112
113
8.636
C
C
126
125
3.211
5.279
0.496
-1.617
CC_G112G113:C125C126_CC
15
-1.387
2.269
35.321
-3.354
-0.997
3.301
35.614
C
C
113
114
3.414
C
C
125
124
3.322
2.074
0.832
-2.020
CC_G113C114:G124C125_CC
16
7.036
-11.581
34.875
-3.612
-0.313
3.475
51.782
C
C
114
115
6.808
C
C
124
123
3.575
5.926
0.290
-0.859
CC_C114U115:A123G124_CC
17
5.188
-5.961
51.220
-1.416
0.047
2.998
46.585
D
D
301
302
6.344
D
D
358
357
3.160
5.008
-0.228
-1.397
DD_GTP301C302:G357U358_DD
18
0.640
-0.811
46.325
-2.162
0.339
2.287
31.269
D
D
302
303
22.758
D
D
357
356
3.236
11.967
-0.477
-1.931
DD_C302C303:G356G357_DD
19
-0.706
1.343
28.932
-5.575
0.768
2.596
30.595
D
D
303
304
14.340
D
D
356
355
3.143
7.492
0.688
-1.828
DD_C303A304:U355G356_DD
20
-0.780
1.493
29.675
-4.785
-1.442
2.524
26.856
D
D
304
305
17.384
D
D
355
354
3.221
7.954
0.506
-1.977
DD_A304G305:C354U355_DD
21
1.199
-2.621
25.644
-6.098
-0.811
3.668
71.016
D
D
305
306
11.520
D
D
354
353
3.914
13.304
-0.266
-0.930
DD_G305G306:A353C354_DD
22
7.427
-6.431
69.573
-1.340
0.530
2.304
43.280
D
D
306
337
1.628
D
D
353
352
3.139
1.190
-3.428
1.198
DD_G306G337:C352A353_DD
23
10.347
-14.155
42.067
1.526
5.502
3.275
45.639
D
D
337
340
4.280
D
D
352
351
3.551
3.316
-1.835
-2.712
DD_G337A340:U351C352_DD
24
2.052
-2.649
45.480
-3.799
2.553
2.700
24.203
D
D
340
341
6.644
D
D
351
350
3.070
2.778
-0.775
-2.603
DD_A340G341:C350U351_DD
25
1.562
-3.737
23.995
-6.990
2.288
3.253
32.627
D
D
341
342
-2.782
D
D
350
349
3.151
-1.562
0.075
-2.246
DD_G341C342:G349C350_DD
26
0.199
-0.354
32.590
-3.732
-0.099
3.516
56.820
D
D
342
343
8.472
D
D
349
348
3.803
8.033
-0.171
-1.817
DD_C342G343:A348G349_DD
27
4.014
-4.233
56.164
-2.412
0.431
1.493
179.422
D
D
336
307
-75.481
D
D
332
331
1.479
-150.942
-2.688
-1.772
DD_A336A307:U331U332_DD
28
83.310
-41.661
171.258
-0.837
1.371
2.770
41.852
D
D
307
308
15.408
D
D
331
330
3.435
10.887
-0.762
-2.348
DD_A307U308:A330U331_DD
29
-1.866
2.640
40.431
-4.388
0.878
2.674
26.037
D
D
308
309
11.805
D
D
330
329
3.114
5.283
-1.250
-1.786
DD_U308G309:C329A330_DD
30
0.430
-0.962
25.501
-5.259
2.881
-2.131
-177.945
D
D
309
310
84.113
D
D
329
338
-2.027
-168.013
2.854
-1.179
DD_G309U310:A338C329_DD
31
-26.645
-13.340
-155.977
0.374
1.461
3.150
35.566
D
D
312
313
12.558
D
D
326
325
3.565
7.608
0.276
-1.680
DD_G312G313:C325C326_DD
32
2.695
-4.448
34.667
-3.904
-0.043
3.109
35.638
D
D
313
314
3.986
D
D
325
324
3.187
2.436
0.859
-1.776
DD_G313C314:G324C325_DD
33
2.257
-3.693
35.488
-3.243
-1.088
3.321
52.053
D
D
314
315
9.452
D
D
324
323
3.525
8.245
0.017
-0.961
DD_C314U315:A323G324_DD
34
6.621
-7.591
51.041
-1.677
0.448
repository
Initial release
Version format compliance
Version format compliance
1
0
2002-05-23
1
1
2011-05-08
1
2
2011-07-13
L11 RIBOSOMAL PROTEIN RNA BINDING DOMAIN, NMR, 20 STRUCTURES
IDENTIFICATION OF KNOWN PROTEIN AND RNA STRUCTURES IN A 5 AMAP OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULAMARISMORTUI
NMR STRUCTURE OF L11-C76, THE C-TERMINAL DOMAIN OF50S RIBOSOMAL PROTEIN L11, MINIMIZED AVERAGE STRUCTURE
NMR STRUCTURE OF L11-C76, THE C-TERMINAL DOMAIN OF50S RIBOSOMAL PROTEIN L11, 33 STRUCTURES
THE RNA BINDING DOMAIN OF RIBOSOMAL PROTEIN L11:THREE-DIMENSIONAL STRUCTURE OF THE RNA -BOUND FORM OF THEPROTEIN, NMR, MINIMIZED AVERAGE STRUCTURE
CRYSTAL STRUCTURE OF A CONSERVED RIBOSOMAL PROTEIN-RNACOMPLEX
THE RNA BINDING DOMAIN OF RIBOSOMAL PROTEIN L11:THREE-DIMENSIONAL STRUCTURE OF THE RNA -BOUND FORM OF THEPROTEIN, NMR, 26 STRUCTURES
PDBE
Y
PDBE
2001-04-27
REL
MG
MAGNESIUM ION
K
POTASSIUM ION
OS
OSMIUM ION
HOH
water
CHAIN C, D ENGINEERED MUTATION U1601A
MG
1159
3
MG
MG
1159
C
MG
1160
3
MG
MG
1160
C
MG
1161
3
MG
MG
1161
C
K
1162
4
K
K
1162
C
MG
1163
3
MG
MG
1163
C
MG
1164
3
MG
MG
1164
C
MG
1165
3
MG
MG
1165
C
MG
1166
3
MG
MG
1166
C
MG
1167
3
MG
MG
1167
C
MG
1168
3
MG
MG
1168
C
OS
1169
5
OS
OS
1169
C
OS
1170
5
OS
OS
1170
C
MG
1172
3
MG
MG
1172
C
MG
1359
3
MG
MG
1359
D
MG
1360
3
MG
MG
1360
D
MG
1361
3
MG
MG
1361
D
K
1362
4
K
K
1362
D
MG
1363
3
MG
MG
1363
D
MG
1364
3
MG
MG
1364
D
MG
1365
3
MG
MG
1365
D
MG
1366
3
MG
MG
1366
D
MG
1367
3
MG
MG
1367
D
MG
1368
3
MG
MG
1368
D
MG
1369
3
MG
MG
1369
D
OS
1370
5
OS
OS
1370
D
OS
1371
5
OS
OS
1371
D
MG
1372
3
MG
MG
1372
D
HOH
2001
6
HOH
HOH
2001
A
HOH
2001
6
HOH
HOH
2001
B
HOH
2001
6
HOH
HOH
2001
C
HOH
2002
6
HOH
HOH
2002
C
HOH
2003
6
HOH
HOH
2003
C
HOH
2004
6
HOH
HOH
2004
C
HOH
2005
6
HOH
HOH
2005
C
HOH
2006
6
HOH
HOH
2006
C
HOH
2001
6
HOH
HOH
2001
D
HOH
2002
6
HOH
HOH
2002
D
HOH
2003
6
HOH
HOH
2003
D
HOH
2004
6
HOH
HOH
2004
D
HOH
2005
6
HOH
HOH
2005
D
n
1
1
A
THR
2
n
2
THR
2
A
PHE
3
n
3
PHE
3
A
ILE
4
n
4
ILE
4
A
THR
5
n
5
THR
5
A
LYS
6
n
6
LYS
6
A
THR
7
n
7
THR
7
A
PRO
8
n
8
PRO
8
A
PRO
9
n
9
PRO
9
A
ALA
10
n
10
ALA
10
A
ALA
11
n
11
ALA
11
A
VAL
12
n
12
VAL
12
A
LEU
13
n
13
LEU
13
A
LEU
14
n
14
LEU
14
A
LYS
15
n
15
LYS
15
A
LYS
16
n
16
LYS
16
A
ALA
17
n
17
ALA
17
A
ALA
18
n
18
ALA
18
A
GLY
19
n
19
GLY
19
A
ILE
20
n
20
ILE
20
A
GLU
21
n
21
GLU
21
A
SER
22
n
22
SER
22
A
GLY
23
n
23
GLY
23
A
SER
24
n
24
SER
24
A
GLY
25
n
25
GLY
25
A
GLU
26
n
26
GLU
26
A
PRO
27
n
27
PRO
27
A
ASN
28
n
28
ASN
28
A
ARG
29
n
29
ARG
29
A
ASN
30
n
30
ASN
30
A
LYS
31
n
31
LYS
31
A
VAL
32
n
32
VAL
32
A
ALA
33
n
33
ALA
33
A
THR
34
n
34
THR
34
A
ILE
35
n
35
ILE
35
A
LYS
36
n
36
LYS
36
A
ARG
37
n
37
ARG
37
A
ASP
38
n
38
ASP
38
A
LYS
39
n
39
LYS
39
A
VAL
40
n
40
VAL
40
A
ARG
41
n
41
ARG
41
A
GLU
42
n
42
GLU
42
A
ILE
43
n
43
ILE
43
A
ALA
44
n
44
ALA
44
A
GLU
45
n
45
GLU
45
A
LEU
46
n
46
LEU
46
A
LYS
47
n
47
LYS
47
A
MET
48
n
48
MET
48
A
PRO
49
n
49
PRO
49
A
ASP
50
n
50
ASP
50
A
LEU
51
n
51
LEU
51
A
ASN
52
n
52
ASN
52
A
ALA
53
n
53
ALA
53
A
ALA
54
n
54
ALA
54
A
SER
55
n
55
SER
55
A
ILE
56
n
56
ILE
56
A
GLU
57
n
57
GLU
57
A
ALA
58
n
58
ALA
58
A
ALA
59
n
59
ALA
59
A
MET
60
n
60
MET
60
A
ARG
61
n
61
ARG
61
A
MET
62
n
62
MET
62
A
ILE
63
n
63
ILE
63
A
GLU
64
n
64
GLU
64
A
GLY
65
n
65
GLY
65
A
THR
66
n
66
THR
66
A
ALA
67
n
67
ALA
67
A
ARG
68
n
68
ARG
68
A
SER
69
n
69
SER
69
A
MET
70
n
70
MET
70
A
GLY
71
n
71
GLY
71
A
ILE
72
n
72
ILE
72
A
VAL
73
n
73
VAL
73
A
VAL
74
n
74
VAL
74
A
GLU
75
n
75
GLU
75
A
n
76
76
A
n
1
201
B
n
2
202
B
n
3
203
B
n
4
204
B
n
5
205
B
LYS
206
n
6
LYS
206
B
THR
207
n
7
THR
207
B
PRO
208
n
8
PRO
208
B
PRO
209
n
9
PRO
209
B
ALA
210
n
10
ALA
210
B
ALA
211
n
11
ALA
211
B
VAL
212
n
12
VAL
212
B
LEU
213
n
13
LEU
213
B
LEU
214
n
14
LEU
214
B
LYS
215
n
15
LYS
215
B
LYS
216
n
16
LYS
216
B
ALA
217
n
17
ALA
217
B
ALA
218
n
18
ALA
218
B
GLY
219
n
19
GLY
219
B
ILE
220
n
20
ILE
220
B
GLU
221
n
21
GLU
221
B
SER
222
n
22
SER
222
B
GLY
223
n
23
GLY
223
B
SER
224
n
24
SER
224
B
GLY
225
n
25
GLY
225
B
GLU
226
n
26
GLU
226
B
PRO
227
n
27
PRO
227
B
ASN
228
n
28
ASN
228
B
ARG
229
n
29
ARG
229
B
ASN
230
n
30
ASN
230
B
LYS
231
n
31
LYS
231
B
VAL
232
n
32
VAL
232
B
ALA
233
n
33
ALA
233
B
THR
234
n
34
THR
234
B
ILE
235
n
35
ILE
235
B
LYS
236
n
36
LYS
236
B
ARG
237
n
37
ARG
237
B
ASP
238
n
38
ASP
238
B
LYS
239
n
39
LYS
239
B
VAL
240
n
40
VAL
240
B
ARG
241
n
41
ARG
241
B
GLU
242
n
42
GLU
242
B
ILE
243
n
43
ILE
243
B
ALA
244
n
44
ALA
244
B
GLU
245
n
45
GLU
245
B
LEU
246
n
46
LEU
246
B
LYS
247
n
47
LYS
247
B
MET
248
n
48
MET
248
B
PRO
249
n
49
PRO
249
B
ASP
250
n
50
ASP
250
B
LEU
251
n
51
LEU
251
B
ASN
252
n
52
ASN
252
B
ALA
253
n
53
ALA
253
B
ALA
254
n
54
ALA
254
B
SER
255
n
55
SER
255
B
ILE
256
n
56
ILE
256
B
GLU
257
n
57
GLU
257
B
ALA
258
n
58
ALA
258
B
ALA
259
n
59
ALA
259
B
MET
260
n
60
MET
260
B
ARG
261
n
61
ARG
261
B
MET
262
n
62
MET
262
B
ILE
263
n
63
ILE
263
B
GLU
264
n
64
GLU
264
B
GLY
265
n
65
GLY
265
B
THR
266
n
66
THR
266
B
ALA
267
n
67
ALA
267
B
ARG
268
n
68
ARG
268
B
SER
269
n
69
SER
269
B
MET
270
n
70
MET
270
B
GLY
271
n
71
GLY
271
B
ILE
272
n
72
ILE
272
B
VAL
273
n
73
VAL
273
B
VAL
274
n
74
VAL
274
B
GLU
275
n
75
GLU
275
B
n
76
276
B
GTP
101
n
1
GTP
101
C
C
102
n
2
C
102
C
C
103
n
3
C
103
C
A
104
n
4
A
104
C
G
105
n
5
G
105
C
G
106
n
6
G
106
C
A
107
n
7
A
107
C
U
108
n
8
U
108
C
G
109
n
9
G
109
C
U
110
n
10
U
110
C
A
111
n
11
A
111
C
G
112
n
12
G
112
C
G
113
n
13
G
113
C
C
114
n
14
C
114
C
U
115
n
15
U
115
C
U
116
n
16
U
116
C
A
117
n
17
A
117
C
G
118
n
18
G
118
C
A
119
n
19
A
119
C
A
120
n
20
A
120
C
G
121
n
21
G
121
C
C
122
n
22
C
122
C
A
123
n
23
A
123
C
G
124
n
24
G
124
C
C
125
n
25
C
125
C
C
126
n
26
C
126
C
A
127
n
27
A
127
C
U
128
n
28
U
128
C
C
129
n
29
C
129
C
A
130
n
30
A
130
C
U
131
n
31
U
131
C
U
132
n
32
U
132
C
U
133
n
33
U
133
C
A
134
n
34
A
134
C
A
135
n
35
A
135
C
A
136
n
36
A
136
C
G
137
n
37
G
137
C
A
138
n
38
A
138
C
A
139
n
39
A
139
C
A
140
n
40
A
140
C
G
141
n
41
G
141
C
C
142
n
42
C
142
C
G
143
n
43
G
143
C
U
144
n
44
U
144
C
A
145
n
45
A
145
C
A
146
n
46
A
146
C
U
147
n
47
U
147
C
A
148
n
48
A
148
C
G
149
n
49
G
149
C
C
150
n
50
C
150
C
U
151
n
51
U
151
C
C
152
n
52
C
152
C
A
153
n
53
A
153
C
C
154
n
54
C
154
C
U
155
n
55
U
155
C
G
156
n
56
G
156
C
G
157
n
57
G
157
C
U
158
n
58
U
158
C
GTP
301
n
1
GTP
301
D
C
302
n
2
C
302
D
C
303
n
3
C
303
D
A
304
n
4
A
304
D
G
305
n
5
G
305
D
G
306
n
6
G
306
D
A
307
n
7
A
307
D
U
308
n
8
U
308
D
G
309
n
9
G
309
D
U
310
n
10
U
310
D
A
311
n
11
A
311
D
G
312
n
12
G
312
D
G
313
n
13
G
313
D
C
314
n
14
C
314
D
U
315
n
15
U
315
D
U
316
n
16
U
316
D
A
317
n
17
A
317
D
G
318
n
18
G
318
D
A
319
n
19
A
319
D
A
320
n
20
A
320
D
G
321
n
21
G
321
D
C
322
n
22
C
322
D
A
323
n
23
A
323
D
G
324
n
24
G
324
D
C
325
n
25
C
325
D
C
326
n
26
C
326
D
A
327
n
27
A
327
D
U
328
n
28
U
328
D
C
329
n
29
C
329
D
A
330
n
30
A
330
D
U
331
n
31
U
331
D
U
332
n
32
U
332
D
U
333
n
33
U
333
D
A
334
n
34
A
334
D
A
335
n
35
A
335
D
A
336
n
36
A
336
D
G
337
n
37
G
337
D
A
338
n
38
A
338
D
A
339
n
39
A
339
D
A
340
n
40
A
340
D
G
341
n
41
G
341
D
C
342
n
42
C
342
D
G
343
n
43
G
343
D
U
344
n
44
U
344
D
A
345
n
45
A
345
D
A
346
n
46
A
346
D
U
347
n
47
U
347
D
A
348
n
48
A
348
D
G
349
n
49
G
349
D
C
350
n
50
C
350
D
U
351
n
51
U
351
D
C
352
n
52
C
352
D
A
353
n
53
A
353
D
C
354
n
54
C
354
D
U
355
n
55
U
355
D
G
356
n
56
G
356
D
G
357
n
57
G
357
D
U
358
n
58
U
358
D
author_and_software_defined_assembly
PQS
2
dimeric
author_and_software_defined_assembly
PQS
2
dimeric
C
A
119
C
O3'
A
19
1_555
C
K
1162
H
K
K
1_555
C
A
120
C
OP2
A
20
1_555
46.2
C
A
119
C
O3'
A
19
1_555
C
K
1162
H
K
K
1_555
C
C
122
C
OP1
C
22
1_555
110.9
C
A
120
C
OP2
A
20
1_555
C
K
1162
H
K
K
1_555
C
C
122
C
OP1
C
22
1_555
64.9
C
A
119
C
O3'
A
19
1_555
C
K
1162
H
K
K
1_555
C
C
122
C
OP2
C
22
1_555
106.3
C
A
120
C
OP2
A
20
1_555
C
K
1162
H
K
K
1_555
C
C
122
C
OP2
C
22
1_555
83.1
C
C
122
C
OP1
C
22
1_555
C
K
1162
H
K
K
1_555
C
C
122
C
OP2
C
22
1_555
53.8
C
A
119
C
O3'
A
19
1_555
C
K
1162
H
K
K
1_555
C
C
122
C
O5'
C
22
1_555
150.5
C
A
120
C
OP2
A
20
1_555
C
K
1162
H
K
K
1_555
C
C
122
C
O5'
C
22
1_555
110.6
C
C
122
C
OP1
C
22
1_555
C
K
1162
H
K
K
1_555
C
C
122
C
O5'
C
22
1_555
48.1
C
C
122
C
OP2
C
22
1_555
C
K
1162
H
K
K
1_555
C
C
122
C
O5'
C
22
1_555
46.0
C
A
119
C
O3'
A
19
1_555
C
K
1162
H
K
K
1_555
C
A
123
C
OP1
A
23
1_555
141.8
C
A
120
C
OP2
A
20
1_555
C
K
1162
H
K
K
1_555
C
A
123
C
OP1
A
23
1_555
147.7
C
C
122
C
OP1
C
22
1_555
C
K
1162
H
K
K
1_555
C
A
123
C
OP1
A
23
1_555
98.8
C
C
122
C
OP2
C
22
1_555
C
K
1162
H
K
K
1_555
C
A
123
C
OP1
A
23
1_555
110.6
C
C
122
C
O5'
C
22
1_555
C
K
1162
H
K
K
1_555
C
A
123
C
OP1
A
23
1_555
67.7
C
A
120
C
OP2
A
20
1_555
C
MG
1163
I
MG
MG
1_555
C
C
122
C
OP1
C
22
1_555
80.2
C
U
116
C
OP1
U
16
1_555
C
MG
1165
K
MG
MG
1_555
D
A
336
D
OP1
A
36
1_555
79.4
C
GTP
101
C
O3B
GTP
1
1_555
C
MG
1166
L
MG
MG
1_555
D
U
358
D
O4
U
58
7_556
111.8
C
GTP
101
C
O3B
GTP
1
1_555
C
MG
1166
L
MG
MG
1_555
C
GTP
101
C
O1B
GTP
1
1_555
53.5
D
U
358
D
O4
U
58
7_556
C
MG
1166
L
MG
MG
1_555
C
GTP
101
C
O1B
GTP
1
1_555
62.2
C
A
123
C
OP2
A
23
1_555
C
MG
1167
M
MG
MG
1_555
C
U
144
C
O4
U
44
1_555
169.7
D
C
322
D
OP1
C
22
1_555
D
K
1362
U
K
K
1_555
D
A
323
D
OP1
A
23
1_555
95.1
D
C
322
D
OP1
C
22
1_555
D
K
1362
U
K
K
1_555
D
C
322
D
O5'
C
22
1_555
45.3
D
A
323
D
OP1
A
23
1_555
D
K
1362
U
K
K
1_555
D
C
322
D
O5'
C
22
1_555
64.7
D
C
322
D
OP1
C
22
1_555
D
K
1362
U
K
K
1_555
D
C
322
D
OP2
C
22
1_555
47.9
D
A
323
D
OP1
A
23
1_555
D
K
1362
U
K
K
1_555
D
C
322
D
OP2
C
22
1_555
105.3
D
C
322
D
O5'
C
22
1_555
D
K
1362
U
K
K
1_555
D
C
322
D
OP2
C
22
1_555
42.5
D
C
322
D
OP1
C
22
1_555
D
K
1362
U
K
K
1_555
D
A
320
D
OP2
A
20
1_555
56.5
D
A
323
D
OP1
A
23
1_555
D
K
1362
U
K
K
1_555
D
A
320
D
OP2
A
20
1_555
142.0
D
C
322
D
O5'
C
22
1_555
D
K
1362
U
K
K
1_555
D
A
320
D
OP2
A
20
1_555
100.0
D
C
322
D
OP2
C
22
1_555
D
K
1362
U
K
K
1_555
D
A
320
D
OP2
A
20
1_555
75.5
D
C
322
D
OP1
C
22
1_555
D
K
1362
U
K
K
1_555
D
A
319
D
O3'
A
19
1_555
105.2
D
A
323
D
OP1
A
23
1_555
D
K
1362
U
K
K
1_555
D
A
319
D
O3'
A
19
1_555
152.9
D
C
322
D
O5'
C
22
1_555
D
K
1362
U
K
K
1_555
D
A
319
D
O3'
A
19
1_555
142.1
D
C
322
D
OP2
C
22
1_555
D
K
1362
U
K
K
1_555
D
A
319
D
O3'
A
19
1_555
101.6
D
A
320
D
OP2
A
20
1_555
D
K
1362
U
K
K
1_555
D
A
319
D
O3'
A
19
1_555
49.5
D
A
320
D
OP2
A
20
1_555
D
MG
1363
V
MG
MG
1_555
D
C
322
D
OP1
C
22
1_555
68.6
C
GTP
101
C
O2B
GTP
1
7_556
D
MG
1364
W
MG
MG
1_555
C
GTP
101
C
N7
GTP
1
7_556
96.6
C
GTP
101
C
O2B
GTP
1
7_556
D
MG
1364
W
MG
MG
1_555
D
GTP
301
D
O1B
GTP
1
1_555
141.6
C
GTP
101
C
N7
GTP
1
7_556
D
MG
1364
W
MG
MG
1_555
D
GTP
301
D
O1B
GTP
1
1_555
121.5
C
U
158
C
O4
U
58
7_556
D
MG
1366
Y
MG
MG
1_555
D
GTP
301
D
O1G
GTP
1
1_555
98.6
D
U
344
D
O4
U
44
1_555
D
MG
1367
Z
MG
MG
1_555
D
A
323
D
OP2
A
23
1_555
156.3
D
G
313
D
OP2
G
13
1_555
D
MG
1372
EA
MG
MG
1_555
D
A
320
D
OP1
A
20
1_555
147.6
D
G
313
D
OP2
G
13
1_555
D
MG
1372
EA
MG
MG
1_555
D
G
313
D
N7
G
13
1_555
93.8
D
A
320
D
OP1
A
20
1_555
D
MG
1372
EA
MG
MG
1_555
D
G
313
D
N7
G
13
1_555
111.7
C
GTP
101
GUANOSINE-5'-TRIPHOSPHATE
C
GTP
1
G
D
GTP
301
GUANOSINE-5'-TRIPHOSPHATE
D
GTP
1
G
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
35
A
N
ILE
35
A
O
VAL
73
A
O
VAL
73
B
N
ILE
235
B
N
ILE
35
B
O
VAL
273
B
O
VAL
73
1
A
OG1
THR
2
A
OG1
THR
2
1
Y
1
A
CG2
THR
2
A
CG2
THR
2
1
Y
1
A
PHE
1
A
PHE
1
1
Y
1
A
ASN
76
A
ASN
76
1
Y
1
B
PHE
201
B
PHE
1
1
Y
1
B
THR
202
B
THR
2
1
Y
1
B
PHE
203
B
PHE
3
1
Y
1
B
ILE
204
B
ILE
4
1
Y
1
B
THR
205
B
THR
5
1
Y
1
B
ASN
276
B
ASN
76
1
Y
1
C
A
119
0.072
SIDE CHAIN
1
C
A
136
0.056
SIDE CHAIN
1
C
G
137
0.058
SIDE CHAIN
1
C
U
147
0.070
SIDE CHAIN
1
D
U
328
0.068
SIDE CHAIN
1
D
U
344
0.064
SIDE CHAIN
1
D
A
345
0.061
SIDE CHAIN
1
D
U
347
0.076
SIDE CHAIN
1
A
ALA
33
-176.27
143.61
1
A
SER
55
178.29
159.66
1
B
ALA
233
175.14
161.98
1
B
ARG
237
-49.76
-11.52
PROTEIN.PARAM
PROTEIN.TOP
DNA-RNA.PARAM
DNA-RNA.TOP
WATER.PARAM
WATER.TOP
ION.PARAM
ION.TOP
0.253
0.217
0.217
2.80
20.00
1373
17542
7.80
94.5
RANDOM
10000
1
THROUGHOUT
0.000
MAD
MAXIMUM LIKELIHOOD USING AMPLITUDES
CNS
2.80
20.00
13
3607
27
2504
1063
0.006
1.030
0.425
0.368
2.84
48
525
27
7.8
88.7
75.50
2.800
20.000
1HC8
17542
0.000
0.24000
1
5.9000
5.000
94.5
0.27000
2.80
2.93
1
4.00
88.7
refinement
CNS
0.9
data reduction
DENZO
data scaling
SCALEPACK
phasing
MLPHARE
RIBOSOMAL PROTEIN L11
CRYSTAL STRUCTURE OF A CONSERVED RIBOSOMAL PROTEIN-RNA COMPLEX
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
5
N
N
5
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
5
N
N
5
N
N
3
N
N
6
N
N
6
N
N
6
N
N
6
N
N
COMPLEX OF THE RIBOSOMAL PROTEIN L11 AND
THERIBOSOMAL 23S RNA FRAGMENT
A
ALA
10
A
ALA
10
HELX_P
A
ALA
17
A
ALA
17
1
1
8
A
ARG
37
A
ARG
37
HELX_P
A
MET
48
A
MET
48
1
2
12
A
GLU
57
A
GLU
57
HELX_P
A
SER
69
A
SER
69
1
4
13
B
ALA
210
B
ALA
10
HELX_P
B
ALA
217
B
ALA
17
1
5
8
B
ARG
237
B
ARG
37
HELX_P
B
MET
248
B
MET
48
1
6
12
B
GLU
257
B
GLU
57
HELX_P
B
SER
269
B
SER
69
1
8
13
covale
1.608
C
GTP
101
C
O3'
GTP
1
1_555
C
C
102
C
P
C
2
1_555
metalc
2.214
C
MG
1161
G
MG
MG
1_555
C
A
148
C
OP1
A
48
1_555
metalc
3.353
C
K
1162
H
K
K
1_555
C
A
119
C
O3'
A
19
1_555
metalc
2.823
C
K
1162
H
K
K
1_555
C
A
120
C
OP2
A
20
1_555
metalc
2.632
C
K
1162
H
K
K
1_555
C
C
122
C
OP1
C
22
1_555
metalc
2.976
C
K
1162
H
K
K
1_555
C
C
122
C
OP2
C
22
1_555
metalc
3.323
C
K
1162
H
K
K
1_555
C
C
122
C
O5'
C
22
1_555
metalc
2.714
C
K
1162
H
K
K
1_555
C
A
123
C
OP1
A
23
1_555
metalc
2.379
C
MG
1163
I
MG
MG
1_555
C
A
120
C
OP2
A
20
1_555
metalc
2.168
C
MG
1163
I
MG
MG
1_555
C
C
122
C
OP1
C
22
1_555
metalc
2.458
C
MG
1164
J
MG
MG
1_555
C
HOH
2001
HA
O
HOH
1_555
metalc
2.183
C
MG
1165
K
MG
MG
1_555
C
U
116
C
OP1
U
16
1_555
metalc
2.324
C
MG
1165
K
MG
MG
1_555
D
A
336
D
OP1
A
36
1_555
metalc
2.867
C
MG
1166
L
MG
MG
1_555
C
GTP
101
C
O3B
GTP
1
1_555
metalc
2.559
C
MG
1166
L
MG
MG
1_555
D
U
358
D
O4
U
58
7_556
metalc
2.810
C
MG
1166
L
MG
MG
1_555
C
GTP
101
C
O1B
GTP
1
1_555
metalc
2.119
C
MG
1167
M
MG
MG
1_555
C
A
123
C
OP2
A
23
1_555
metalc
2.006
C
MG
1167
M
MG
MG
1_555
C
U
144
C
O4
U
44
1_555
covale
1.602
D
GTP
301
D
O3'
GTP
1
1_555
D
C
302
D
P
C
2
1_555
metalc
2.197
D
MG
1361
T
MG
MG
1_555
D
A
348
D
OP1
A
48
1_555
metalc
2.920
D
K
1362
U
K
K
1_555
D
C
322
D
OP1
C
22
1_555
metalc
2.769
D
K
1362
U
K
K
1_555
D
A
323
D
OP1
A
23
1_555
metalc
3.460
D
K
1362
U
K
K
1_555
D
C
322
D
O5'
C
22
1_555
metalc
3.337
D
K
1362
U
K
K
1_555
D
C
322
D
OP2
C
22
1_555
metalc
2.744
D
K
1362
U
K
K
1_555
D
A
320
D
OP2
A
20
1_555
metalc
3.169
D
K
1362
U
K
K
1_555
D
A
319
D
O3'
A
19
1_555
metalc
2.390
D
MG
1363
V
MG
MG
1_555
D
A
320
D
OP2
A
20
1_555
metalc
2.380
D
MG
1363
V
MG
MG
1_555
D
C
322
D
OP1
C
22
1_555
metalc
2.793
D
MG
1364
W
MG
MG
1_555
C
GTP
101
C
O2B
GTP
1
7_556
metalc
2.988
D
MG
1364
W
MG
MG
1_555
C
GTP
101
C
N7
GTP
1
7_556
metalc
2.356
D
MG
1364
W
MG
MG
1_555
D
GTP
301
D
O1B
GTP
1
1_555
metalc
2.189
D
MG
1365
X
MG
MG
1_555
D
A
311
D
OP2
A
11
1_555
metalc
2.487
D
MG
1366
Y
MG
MG
1_555
C
U
158
C
O4
U
58
7_556
metalc
2.119
D
MG
1366
Y
MG
MG
1_555
D
GTP
301
D
O1G
GTP
1
1_555
metalc
1.910
D
MG
1367
Z
MG
MG
1_555
D
U
344
D
O4
U
44
1_555
metalc
2.229
D
MG
1367
Z
MG
MG
1_555
D
A
323
D
OP2
A
23
1_555
metalc
2.731
D
MG
1372
EA
MG
MG
1_555
D
G
313
D
OP2
G
13
1_555
metalc
2.999
D
MG
1372
EA
MG
MG
1_555
D
A
320
D
OP1
A
20
1_555
metalc
3.094
D
MG
1372
EA
MG
MG
1_555
D
G
313
D
N7
G
13
1_555
hydrog
TYPE_28_PAIR
C
GTP
101
C
N1
GTP
1
1_555
C
U
158
C
O2
U
58
1_555
hydrog
TYPE_28_PAIR
C
GTP
101
C
O6
GTP
1
1_555
C
U
158
C
N3
U
58
1_555
hydrog
WATSON-CRICK
C
C
102
C
N3
C
2
1_555
C
G
157
C
N1
G
57
1_555
hydrog
WATSON-CRICK
C
C
102
C
N4
C
2
1_555
C
G
157
C
O6
G
57
1_555
hydrog
WATSON-CRICK
C
C
102
C
O2
C
2
1_555
C
G
157
C
N2
G
57
1_555
hydrog
WATSON-CRICK
C
C
103
C
N3
C
3
1_555
C
G
156
C
N1
G
56
1_555
hydrog
WATSON-CRICK
C
C
103
C
N4
C
3
1_555
C
G
156
C
O6
G
56
1_555
hydrog
WATSON-CRICK
C
C
103
C
O2
C
3
1_555
C
G
156
C
N2
G
56
1_555
hydrog
WATSON-CRICK
C
A
104
C
N1
A
4
1_555
C
U
155
C
N3
U
55
1_555
hydrog
WATSON-CRICK
C
A
104
C
N6
A
4
1_555
C
U
155
C
O4
U
55
1_555
hydrog
G-A MISPAIR
C
G
105
C
N2
G
5
1_555
C
A
135
C
N3
A
35
1_555
hydrog
WATSON-CRICK
C
G
105
C
N1
G
5
1_555
C
C
154
C
N3
C
54
1_555
hydrog
WATSON-CRICK
C
G
105
C
N2
G
5
1_555
C
C
154
C
O2
C
54
1_555
hydrog
WATSON-CRICK
C
G
105
C
O6
G
5
1_555
C
C
154
C
N4
C
54
1_555
hydrog
TYPE_11_PAIR
C
G
106
C
N2
G
6
1_555
C
A
153
C
N7
A
53
1_555
hydrog
TYPE_11_PAIR
C
G
106
C
N3
G
6
1_555
C
A
153
C
N6
A
53
1_555
hydrog
WATSON-CRICK
C
A
107
C
N1
A
7
1_555
C
U
131
C
N3
U
31
1_555
hydrog
WATSON-CRICK
C
A
107
C
N6
A
7
1_555
C
U
131
C
O4
U
31
1_555
hydrog
WATSON-CRICK
C
U
108
C
N3
U
8
1_555
C
A
130
C
N1
A
30
1_555
hydrog
WATSON-CRICK
C
U
108
C
O4
U
8
1_555
C
A
130
C
N6
A
30
1_555
hydrog
WATSON-CRICK
C
G
109
C
N1
G
9
1_555
C
C
129
C
N3
C
29
1_555
hydrog
WATSON-CRICK
C
G
109
C
N2
G
9
1_555
C
C
129
C
O2
C
29
1_555
hydrog
WATSON-CRICK
C
G
109
C
O6
G
9
1_555
C
C
129
C
N4
C
29
1_555
hydrog
HOOGSTEEN
C
U
110
C
N3
U
10
1_555
C
A
138
C
N7
A
38
1_555
hydrog
HOOGSTEEN
C
U
110
C
O4
U
10
1_555
C
A
138
C
N6
A
38
1_555
hydrog
WATSON-CRICK
C
G
112
C
N1
G
12
1_555
C
C
126
C
N3
C
26
1_555
hydrog
WATSON-CRICK
C
G
112
C
N2
G
12
1_555
C
C
126
C
O2
C
26
1_555
hydrog
WATSON-CRICK
C
G
112
C
O6
G
12
1_555
C
C
126
C
N4
C
26
1_555
hydrog
WATSON-CRICK
C
G
113
C
N1
G
13
1_555
C
C
125
C
N3
C
25
1_555
hydrog
WATSON-CRICK
C
G
113
C
N2
G
13
1_555
C
C
125
C
O2
C
25
1_555
hydrog
WATSON-CRICK
C
G
113
C
O6
G
13
1_555
C
C
125
C
N4
C
25
1_555
hydrog
WATSON-CRICK
C
C
114
C
N3
C
14
1_555
C
G
124
C
N1
G
24
1_555
hydrog
WATSON-CRICK
C
C
114
C
N4
C
14
1_555
C
G
124
C
O6
G
24
1_555
hydrog
WATSON-CRICK
C
C
114
C
O2
C
14
1_555
C
G
124
C
N2
G
24
1_555
hydrog
U-A PAIR
C
U
115
C
O2
U
15
1_555
C
A
123
C
N6
A
23
1_555
hydrog
TYPE_6_PAIR
C
G
121
C
N1
G
21
1_555
C
G
141
C
O6
G
41
1_555
hydrog
TYPE_6_PAIR
C
G
121
C
N2
G
21
1_555
C
G
141
C
N7
G
41
1_555
hydrog
G-C PAIR
C
G
121
C
O6
G
21
1_555
C
C
150
C
N4
C
50
1_555
hydrog
C-C MISPAIR
C
C
122
C
N3
C
22
1_555
C
C
142
C
N4
C
42
1_555
hydrog
C-G PAIR
C
C
122
C
N4
C
22
1_555
C
G
149
C
O6
G
49
1_555
hydrog
REVERSED WATSON-CRICK
C
U
132
C
N3
U
32
1_555
C
A
136
C
N1
A
36
1_555
hydrog
REVERSED WATSON-CRICK
C
U
132
C
O2
U
32
1_555
C
A
136
C
N6
A
36
1_555
hydrog
WATSON-CRICK
C
G
137
C
N1
G
37
1_555
C
C
152
C
N3
C
52
1_555
hydrog
WATSON-CRICK
C
G
137
C
N2
G
37
1_555
C
C
152
C
O2
C
52
1_555
hydrog
WATSON-CRICK
C
G
137
C
O6
G
37
1_555
C
C
152
C
N4
C
52
1_555
hydrog
WATSON-CRICK
C
A
140
C
N1
A
40
1_555
C
U
151
C
N3
U
51
1_555
hydrog
WATSON-CRICK
C
A
140
C
N6
A
40
1_555
C
U
151
C
O4
U
51
1_555
hydrog
WATSON-CRICK
C
G
141
C
N1
G
41
1_555
C
C
150
C
N3
C
50
1_555
hydrog
WATSON-CRICK
C
G
141
C
N2
G
41
1_555
C
C
150
C
O2
C
50
1_555
hydrog
WATSON-CRICK
C
G
141
C
O6
G
41
1_555
C
C
150
C
N4
C
50
1_555
hydrog
WATSON-CRICK
C
C
142
C
N3
C
42
1_555
C
G
149
C
N1
G
49
1_555
hydrog
WATSON-CRICK
C
C
142
C
N4
C
42
1_555
C
G
149
C
O6
G
49
1_555
hydrog
WATSON-CRICK
C
C
142
C
O2
C
42
1_555
C
G
149
C
N2
G
49
1_555
hydrog
TYPE_11_PAIR
C
G
143
C
N2
G
43
1_555
C
A
148
C
N7
A
48
1_555
hydrog
TYPE_11_PAIR
C
G
143
C
N3
G
43
1_555
C
A
148
C
N6
A
48
1_555
hydrog
TYPE_28_PAIR
D
GTP
301
D
N1
GTP
1
1_555
D
U
358
D
O2
U
58
1_555
hydrog
TYPE_28_PAIR
D
GTP
301
D
O6
GTP
1
1_555
D
U
358
D
N3
U
58
1_555
hydrog
WATSON-CRICK
D
C
302
D
N3
C
2
1_555
D
G
357
D
N1
G
57
1_555
hydrog
WATSON-CRICK
D
C
302
D
N4
C
2
1_555
D
G
357
D
O6
G
57
1_555
hydrog
WATSON-CRICK
D
C
302
D
O2
C
2
1_555
D
G
357
D
N2
G
57
1_555
hydrog
WATSON-CRICK
D
C
303
D
N3
C
3
1_555
D
G
356
D
N1
G
56
1_555
hydrog
WATSON-CRICK
D
C
303
D
N4
C
3
1_555
D
G
356
D
O6
G
56
1_555
hydrog
WATSON-CRICK
D
C
303
D
O2
C
3
1_555
D
G
356
D
N2
G
56
1_555
hydrog
WATSON-CRICK
D
A
304
D
N1
A
4
1_555
D
U
355
D
N3
U
55
1_555
hydrog
WATSON-CRICK
D
A
304
D
N6
A
4
1_555
D
U
355
D
O4
U
55
1_555
hydrog
G-A MISPAIR
D
G
305
D
N2
G
5
1_555
D
A
335
D
N3
A
35
1_555
hydrog
WATSON-CRICK
D
G
305
D
N1
G
5
1_555
D
C
354
D
N3
C
54
1_555
hydrog
WATSON-CRICK
D
G
305
D
N2
G
5
1_555
D
C
354
D
O2
C
54
1_555
hydrog
WATSON-CRICK
D
G
305
D
O6
G
5
1_555
D
C
354
D
N4
C
54
1_555
hydrog
TYPE_11_PAIR
D
G
306
D
N2
G
6
1_555
D
A
353
D
N7
A
53
1_555
hydrog
TYPE_11_PAIR
D
G
306
D
N3
G
6
1_555
D
A
353
D
N6
A
53
1_555
hydrog
WATSON-CRICK
D
A
307
D
N1
A
7
1_555
D
U
331
D
N3
U
31
1_555
hydrog
WATSON-CRICK
D
A
307
D
N6
A
7
1_555
D
U
331
D
O4
U
31
1_555
hydrog
WATSON-CRICK
D
U
308
D
N3
U
8
1_555
D
A
330
D
N1
A
30
1_555
hydrog
WATSON-CRICK
D
U
308
D
O4
U
8
1_555
D
A
330
D
N6
A
30
1_555
hydrog
WATSON-CRICK
D
G
309
D
N1
G
9
1_555
D
C
329
D
N3
C
29
1_555
hydrog
WATSON-CRICK
D
G
309
D
N2
G
9
1_555
D
C
329
D
O2
C
29
1_555
hydrog
WATSON-CRICK
D
G
309
D
O6
G
9
1_555
D
C
329
D
N4
C
29
1_555
hydrog
HOOGSTEEN
D
U
310
D
N3
U
10
1_555
D
A
338
D
N7
A
38
1_555
hydrog
HOOGSTEEN
D
U
310
D
O4
U
10
1_555
D
A
338
D
N6
A
38
1_555
hydrog
WATSON-CRICK
D
G
312
D
N1
G
12
1_555
D
C
326
D
N3
C
26
1_555
hydrog
WATSON-CRICK
D
G
312
D
N2
G
12
1_555
D
C
326
D
O2
C
26
1_555
hydrog
WATSON-CRICK
D
G
312
D
O6
G
12
1_555
D
C
326
D
N4
C
26
1_555
hydrog
WATSON-CRICK
D
G
313
D
N1
G
13
1_555
D
C
325
D
N3
C
25
1_555
hydrog
WATSON-CRICK
D
G
313
D
N2
G
13
1_555
D
C
325
D
O2
C
25
1_555
hydrog
WATSON-CRICK
D
G
313
D
O6
G
13
1_555
D
C
325
D
N4
C
25
1_555
hydrog
WATSON-CRICK
D
C
314
D
N3
C
14
1_555
D
G
324
D
N1
G
24
1_555
hydrog
WATSON-CRICK
D
C
314
D
N4
C
14
1_555
D
G
324
D
O6
G
24
1_555
hydrog
WATSON-CRICK
D
C
314
D
O2
C
14
1_555
D
G
324
D
N2
G
24
1_555
hydrog
U-A PAIR
D
U
315
D
O2
U
15
1_555
D
A
323
D
N6
A
23
1_555
hydrog
TYPE_6_PAIR
D
G
321
D
N1
G
21
1_555
D
G
341
D
O6
G
41
1_555
hydrog
TYPE_6_PAIR
D
G
321
D
N2
G
21
1_555
D
G
341
D
N7
G
41
1_555
hydrog
G-C PAIR
D
G
321
D
O6
G
21
1_555
D
C
350
D
N4
C
50
1_555
hydrog
C-C MISPAIR
D
C
322
D
N3
C
22
1_555
D
C
342
D
N4
C
42
1_555
hydrog
C-G PAIR
D
C
322
D
N4
C
22
1_555
D
G
349
D
O6
G
49
1_555
hydrog
REVERSED WATSON-CRICK
D
U
332
D
N3
U
32
1_555
D
A
336
D
N1
A
36
1_555
hydrog
REVERSED WATSON-CRICK
D
U
332
D
O2
U
32
1_555
D
A
336
D
N6
A
36
1_555
hydrog
WATSON-CRICK
D
G
337
D
N1
G
37
1_555
D
C
352
D
N3
C
52
1_555
hydrog
WATSON-CRICK
D
G
337
D
N2
G
37
1_555
D
C
352
D
O2
C
52
1_555
hydrog
WATSON-CRICK
D
G
337
D
O6
G
37
1_555
D
C
352
D
N4
C
52
1_555
hydrog
WATSON-CRICK
D
A
340
D
N1
A
40
1_555
D
U
351
D
N3
U
51
1_555
hydrog
WATSON-CRICK
D
A
340
D
N6
A
40
1_555
D
U
351
D
O4
U
51
1_555
hydrog
WATSON-CRICK
D
G
341
D
N1
G
41
1_555
D
C
350
D
N3
C
50
1_555
hydrog
WATSON-CRICK
D
G
341
D
N2
G
41
1_555
D
C
350
D
O2
C
50
1_555
hydrog
WATSON-CRICK
D
G
341
D
O6
G
41
1_555
D
C
350
D
N4
C
50
1_555
hydrog
WATSON-CRICK
D
C
342
D
N3
C
42
1_555
D
G
349
D
N1
G
49
1_555
hydrog
WATSON-CRICK
D
C
342
D
N4
C
42
1_555
D
G
349
D
O6
G
49
1_555
hydrog
WATSON-CRICK
D
C
342
D
O2
C
42
1_555
D
G
349
D
N2
G
49
1_555
hydrog
TYPE_11_PAIR
D
G
343
D
N2
G
43
1_555
D
A
348
D
N7
A
48
1_555
hydrog
TYPE_11_PAIR
D
G
343
D
N3
G
43
1_555
D
A
348
D
N6
A
48
1_555
RIBOSOME
RIBOSOME, RIBOSOMAL RNA, TERTIARY STRUCTURE, RNA-PROTEIN
given
0.043157
-0.998994
-0.012207
-0.392208
-0.005704
-0.919859
0.918863
0.044486
-0.392060
166.83000
180.47920
-58.80740
RL11_BACST
UNP
1
P56210
1HC8
PDB
2
1HC8
58
133
1HC8
1
76
P56210
A
1
1
76
58
133
1HC8
201
276
P56210
B
1
1
76
101
158
1HC8
101
158
1HC8
C
2
1
58
301
358
1HC8
301
358
1HC8
D
2
1
58
2
2
parallel
parallel
A
VAL
32
A
VAL
32
A
THR
34
A
THR
34
A
ILE
72
A
ILE
72
A
GLU
75
A
GLU
75
B
VAL
232
B
VAL
32
B
THR
234
B
THR
34
B
ILE
272
B
ILE
72
B
GLU
275
B
GLU
75
BINDING SITE FOR RESIDUE MG C1159
Software
1
BINDING SITE FOR RESIDUE MG C1161
Software
1
BINDING SITE FOR RESIDUE K C1162
Software
4
BINDING SITE FOR RESIDUE MG C1163
Software
3
BINDING SITE FOR RESIDUE MG C1164
Software
2
BINDING SITE FOR RESIDUE MG C1165
Software
3
BINDING SITE FOR RESIDUE MG C1166
Software
2
BINDING SITE FOR RESIDUE MG C1167
Software
3
BINDING SITE FOR RESIDUE MG C1168
Software
1
BINDING SITE FOR RESIDUE OS C1169
Software
1
BINDING SITE FOR RESIDUE MG C1172
Software
1
BINDING SITE FOR RESIDUE MG D1360
Software
1
BINDING SITE FOR RESIDUE MG D1361
Software
2
BINDING SITE FOR RESIDUE K D1362
Software
4
BINDING SITE FOR RESIDUE MG D1363
Software
3
BINDING SITE FOR RESIDUE MG D1364
Software
2
BINDING SITE FOR RESIDUE MG D1365
Software
1
BINDING SITE FOR RESIDUE MG D1366
Software
2
BINDING SITE FOR RESIDUE MG D1367
Software
2
BINDING SITE FOR RESIDUE MG D1368
Software
1
BINDING SITE FOR RESIDUE MG D1372
Software
3
C
U
108
C
U
8
1
1_555
C
A
148
C
A
48
1
1_555
C
A
119
C
A
19
4
1_555
C
A
120
C
A
20
4
1_555
C
C
122
C
C
22
4
1_555
C
A
123
C
A
23
4
1_555
C
A
120
C
A
20
3
1_555
C
G
121
C
G
21
3
1_555
C
C
122
C
C
22
3
1_555
C
C
152
C
C
52
2
1_555
C
HOH
2001
HA
HOH
2
1_555
C
U
115
C
U
15
3
1_555
C
U
116
C
U
16
3
1_555
D
A
336
D
A
36
3
1_555
C
GTP
101
C
GTP
1
2
1_555
D
U
358
D
U
58
2
1_555
C
A
123
C
A
23
3
1_555
C
G
143
C
G
43
3
1_555
C
U
144
C
U
44
3
1_555
C
A
111
C
A
11
1
1_555
C
G
137
C
G
37
1
1_555
C
G
113
C
G
13
1
1_555
D
G
321
D
G
21
1
1_555
D
G
321
D
G
21
2
1_555
D
A
348
D
A
48
2
1_555
D
A
319
D
A
19
4
1_555
D
A
320
D
A
20
4
1_555
D
C
322
D
C
22
4
1_555
D
A
323
D
A
23
4
1_555
D
G
313
D
G
13
3
1_555
D
A
320
D
A
20
3
1_555
D
C
322
D
C
22
3
1_555
C
GTP
101
C
GTP
1
2
1_555
D
GTP
301
D
GTP
1
2
1_555
D
A
311
D
A
11
1
1_555
C
U
158
C
U
58
2
1_555
D
GTP
301
D
GTP
1
2
1_555
D
A
323
D
A
23
2
1_555
D
U
344
D
U
44
2
1_555
D
G
306
D
G
6
1
1_555
D
G
312
D
G
12
3
1_555
D
G
313
D
G
13
3
1_555
D
A
320
D
A
20
3
1_555
96
P 43 21 2