1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Nagata, T. Kurihara, Y. Matsuda, G. Saeki, J. Kohno, T. Yanagida, Y. Ishikawa, F. Uesugi, S. Katahira, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N N N 159 S C N 160 N C N 161 N O N 162 S C N 163 N C N 164 N C N 165 N C N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 N C N 185 N C N 186 N C N 187 N C N 188 N O N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N N N 203 S C N 204 N C N 205 N O N 206 N C N 207 N C N 208 N C N 209 N C N 210 N N N 211 N O N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N N N 228 S C N 229 N C N 230 N O N 231 N C N 232 N C N 233 N S N 234 N C N 235 N O N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N N N 248 S C N 249 N C N 250 N O N 251 N C Y 252 N C Y 253 N C Y 254 N C Y 255 N C Y 256 N C Y 257 N C N 258 N O N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 S C N 272 N C N 273 N O N 274 N C N 275 N C N 276 N C N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C N 292 N O N 293 N O N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 S C N 303 N C N 304 N O N 305 R C N 306 N O N 307 N C N 308 N O N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N N N 319 S C N 320 N C N 321 N O N 322 N C Y 323 N C Y 324 N C Y 325 N C Y 326 N N Y 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N C N 332 N O N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N N N 346 S C N 347 N C N 348 N O N 349 N C Y 350 N C Y 351 N C Y 352 N C Y 353 N C Y 354 N C Y 355 N C N 356 N O N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N N N 370 S C N 371 N C N 372 N O N 373 N C N 374 N C N 375 N C N 376 N O N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing Y 246 N doub Y 247 N sing Y 248 N sing N 249 N sing Y 250 N doub N 251 N sing Y 252 N doub N 253 N sing Y 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N doub N 311 N sing N 312 N sing N 313 N sing N 314 N sing Y 315 N doub Y 316 N sing Y 317 N sing N 318 N sing Y 319 N doub Y 320 N sing Y 321 N sing N 322 N sing Y 323 N sing Y 324 N doub N 325 N sing Y 326 N doub N 327 N sing Y 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N doub N 339 N sing N 340 N sing N 341 N sing N 342 N sing Y 343 N doub Y 344 N sing Y 345 N sing N 346 N sing Y 347 N doub N 348 N sing Y 349 N doub N 350 N sing Y 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N doub N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 287 221 237 10.1006/jmbi.1999.2616 10080887 Structure and interactions with RNA of the N-terminal UUAG-specific RNA-binding domain of hnRNP D0. 1999 10.2210/pdb1hd0/pdb pdb_00001hd0 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 8572.929 PROTEIN (HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D0) RNA-BINDING DOMAIN 1 man polymer no no KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia Escherichia coli sample PCR HELA NUCLEUS 9606 Homo sapiens BL21(DE3) PET3A 469008 Escherichia coli BL21(DE3) BL21(DE3) PET3A database_2 pdbx_struct_assembly pdbx_struct_oper_list chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Database references Derived calculations Data collection 1 0 2000-05-18 1 1 2008-04-26 1 2 2011-07-13 1 3 2022-02-23 1 4 2023-12-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession BNL Y RCSB 1999-05-18 REL RESTRAINED ENERGY MINIMIZED MEAN STRUCTURE. LOWER ENERGIES 200 1 NOESY TOCSY DQF-COSY 1H-15N 2D HSQC 15N-EDITED NOESY-HSQC 13C-EDITED NOESY-HSQC 15N-EDITED TOCSY-HSQC HNCA HNCO HN(CO)CA HNCACB CBCA(CO)NH HNHA HCCH-COSY HCCH-TOCSY 0 mM 6.0 1 atm 298 K simulated annealing 90% H2O/10% D2O BRUNGER refinement X-PLOR 3.1 BRUNGER refinement X-PLOR 3.8 structure solution X-PLOR 3.1 structure solution X-PLOR 3.8 500 Bruker AMX500 600 Bruker DRX600 LYS 98 n 1 LYS 98 A MET 99 n 2 MET 99 A PHE 100 n 3 PHE 100 A ILE 101 n 4 ILE 101 A GLY 102 n 5 GLY 102 A GLY 103 n 6 GLY 103 A LEU 104 n 7 LEU 104 A SER 105 n 8 SER 105 A TRP 106 n 9 TRP 106 A ASP 107 n 10 ASP 107 A THR 108 n 11 THR 108 A THR 109 n 12 THR 109 A LYS 110 n 13 LYS 110 A LYS 111 n 14 LYS 111 A ASP 112 n 15 ASP 112 A LEU 113 n 16 LEU 113 A LYS 114 n 17 LYS 114 A ASP 115 n 18 ASP 115 A TYR 116 n 19 TYR 116 A PHE 117 n 20 PHE 117 A SER 118 n 21 SER 118 A LYS 119 n 22 LYS 119 A PHE 120 n 23 PHE 120 A GLY 121 n 24 GLY 121 A GLU 122 n 25 GLU 122 A VAL 123 n 26 VAL 123 A VAL 124 n 27 VAL 124 A ASP 125 n 28 ASP 125 A CYS 126 n 29 CYS 126 A THR 127 n 30 THR 127 A LEU 128 n 31 LEU 128 A LYS 129 n 32 LYS 129 A LEU 130 n 33 LEU 130 A ASP 131 n 34 ASP 131 A PRO 132 n 35 PRO 132 A ILE 133 n 36 ILE 133 A THR 134 n 37 THR 134 A GLY 135 n 38 GLY 135 A ARG 136 n 39 ARG 136 A SER 137 n 40 SER 137 A ARG 138 n 41 ARG 138 A GLY 139 n 42 GLY 139 A PHE 140 n 43 PHE 140 A GLY 141 n 44 GLY 141 A PHE 142 n 45 PHE 142 A VAL 143 n 46 VAL 143 A LEU 144 n 47 LEU 144 A PHE 145 n 48 PHE 145 A LYS 146 n 49 LYS 146 A GLU 147 n 50 GLU 147 A SER 148 n 51 SER 148 A GLU 149 n 52 GLU 149 A SER 150 n 53 SER 150 A VAL 151 n 54 VAL 151 A ASP 152 n 55 ASP 152 A LYS 153 n 56 LYS 153 A VAL 154 n 57 VAL 154 A MET 155 n 58 MET 155 A ASP 156 n 59 ASP 156 A GLN 157 n 60 GLN 157 A LYS 158 n 61 LYS 158 A GLU 159 n 62 GLU 159 A HIS 160 n 63 HIS 160 A LYS 161 n 64 LYS 161 A LEU 162 n 65 LEU 162 A ASN 163 n 66 ASN 163 A GLY 164 n 67 GLY 164 A LYS 165 n 68 LYS 165 A VAL 166 n 69 VAL 166 A ILE 167 n 70 ILE 167 A ASP 168 n 71 ASP 168 A PRO 169 n 72 PRO 169 A LYS 170 n 73 LYS 170 A ARG 171 n 74 ARG 171 A ALA 172 n 75 ALA 172 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A H H PHE ALA 100 172 0.91 1 A A HD23 HG LEU LEU 128 130 1.13 1 A A O H GLY ASP 102 168 1.14 1 A A HD12 HG LEU LEU 128 130 1.17 1 A A HD22 HD12 LEU LEU 128 130 1.19 1 A A OE2 H GLU GLU 147 149 1.20 1 A A HB2 HB2 ASP ARG 131 136 1.21 1 A A HG21 HE1 VAL HIS 154 160 1.24 1 A A HG HD12 LEU LEU 128 130 1.25 1 A A O HD3 LEU PRO 130 132 1.27 1 A A HG HD13 LEU LEU 128 130 1.28 1 A A OE2 HB2 GLU GLU 147 149 1.28 1 A A HG11 H VAL ILE 166 167 1.34 1 A A HB2 O LYS PHE 129 140 1.40 1 A A CA HB1 MET ALA 99 172 1.43 1 A A O H ASP SER 115 118 1.47 1 A A O HB3 MET ALA 99 172 1.48 1 A A N HB1 MET ALA 99 172 1.50 1 A A HD22 CD2 LEU LEU 128 130 1.52 1 A A OD1 H ASP LEU 112 113 1.52 1 A A HD22 CD1 LEU LEU 128 130 1.52 1 A A OE2 N GLU GLU 147 149 1.54 1 A A HG CD1 LEU LEU 128 130 1.54 1 A A CD2 HD12 LEU LEU 128 130 1.54 1 A A C HB1 MET ALA 99 172 1.56 1 A A O HD3 ILE PRO 167 169 1.58 1 A A HD22 CG LEU LEU 128 130 1.58 1 A A O HG GLU SER 147 150 1.59 1 A A CB O LYS PHE 129 140 1.79 1 A A O OG GLU SER 147 150 1.81 1 A A CD2 CG LEU LEU 128 130 1.85 1 A A CG CD1 LEU LEU 128 130 1.85 1 A A C CB MET ALA 99 172 1.90 1 A A O CD LEU PRO 130 132 1.91 1 A A OE2 CB GLU GLU 147 149 1.96 1 A A O OD1 THR ASP 109 112 1.96 1 A A CD2 CD1 LEU LEU 128 130 1.98 1 A A O N GLY ASP 102 168 2.02 1 A A O OD2 GLU ASP 149 152 2.05 1 A A O N LEU PRO 130 132 2.08 1 A A CD2 CD2 LEU LEU 128 130 2.12 1 A A OE2 CA GLU GLU 147 149 2.13 1 A A O OG1 SER THR 105 108 2.18 1 A A O CB MET ALA 99 172 2.19 1 A ARG 136 0.149 SIDE CHAIN 1 A ARG 138 0.302 SIDE CHAIN 1 A ARG 171 0.289 SIDE CHAIN 1 A TYR 116 -39.14 -33.79 1 A ASP 131 -39.35 78.91 1 A SER 137 -63.83 90.17 1 A ARG 138 -89.70 33.48 1 A PHE 140 -170.38 121.36 1 A LYS 161 -157.24 72.93 1 A ARG 171 -90.09 49.51 HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D0 (HNRNP D0 RBD1), NMR 1 N N A LYS 110 A LYS 13 HELX_P A PHE 120 A PHE 23 5 H1 11 A SER 148 A SER 51 HELX_P A GLN 157 A GLN 60 5 H2 10 RNA BINDING PROTEIN RNA-BINDING DOMAIN, RNA BINDING PROTEIN HNRPD_HUMAN UNP 1 Q14103 98 172 1HD0 98 172 Q14103 A 1 1 75 1 1 1 1 A LYS 98 A LYS 1 A GLY 102 A GLY 5 A VAL 123 A VAL 26 A LYS 129 A LYS 32 A PHE 140 A PHE 43 A PHE 145 A PHE 48 A ASP 168 A ASP 71 A ARG 171 A ARG 74 1 P 1