0.019673 0.011358 0.000000 0.000000 0.022717 0.000000 0.000000 0.000000 0.007128 0.00000 0.00000 0.00000 Davies, C. White, S.W. Nicholas, R.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 3 90.00 90.00 120.00 50.830 50.830 140.290 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 276 616 10.1074/JBC.M004471200 10967102 Crystal Structure of a Deacylation-Defective Mutant of Penicillin-Binding Protein 5 at 2.3-A Resolution 2001 US Rev.Infect.Dis. 0162-0886 10 733 3055172 Relations between Beta-Lactamases and Penicillin-Binding Proteins: Beta-Lactamase Activity of Penicillin-Binding Protein 5 from Escherichia Coli 1988 NE FEBS Lett. FEBLAL 0165 0014-5793 165 185 10.1016/0014-5793(84)80166-0 6319180 An Amino Acid Substitution that Blocks the Deacylation Step in the Enzyme Mechanism of Penicillin-Binding Protein 5 of Escherichia Coli 1984 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 293.0 1 MIRRORS IMAGE PLATE 1998-12-15 MACSCIENCE SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE NONIUS FR391 39899.152 PENICILLIN-BINDING PROTEIN 5 3.4.16.4 YES 1 man polymer 18.015 water 145 nat water no no DDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGN PVFKGSSLMFLKPGMQVPVSQLIRDINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS SARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVM GGRTFKGREAESKKLLTWGFRFFETVNPLKVGKEFASEPVWFGDSDRASLGVDKDVYLTIPRGRMKDLKASYVLNSSELH APLQKNQVVGTINFQLDGKTIEQRPLVVLQEIPEGNFGDPVID DDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGN PVFKGSSLMFLKPGMQVPVSQLIRDINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS SARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVM GGRTFKGREAESKKLLTWGFRFFETVNPLKVGKEFASEPVWFGDSDRASLGVDKDVYLTIPRGRMKDLKASYVLNSSELH APLQKNQVVGTINFQLDGKTIEQRPLVVLQEIPEGNFGDPVID A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample PERIPLASM DACA 562 ESCHERICHIA COLI DACA 562 ESCHERICHIA COLI MC1061 PBR322 1 3.06 59.5 7.00 20% POLYETHYLENE GLYCOL 4000, 50 MM TRIS PH 7.0, 0.2 % SODIUM AZIDE repository Initial release Version format compliance Version format compliance 1 0 2001-11-08 1 1 2011-05-08 1 2 2011-07-13 PDBE Y PDBE 2000-11-11 REL HOH water CHAIN A ENGINEERED MUTATION GLY105ASP TO PRODUCE SPBP 5', THE LAST 17 AMINO ACIDS WERE REMOVED BY DELETION OF THEIR RESPECTIVE CODONS, BUT AN ADDITIONAL SIX AMINO ACIDS (GDPVID) WERE INTRODUCED AT THE C TERMINUS DUE TO READ-THROUGH TO THE STOP CODON. NONE OF THESE NON-NATIVE RESIDUES ARE VISIBLE IN THE ELECTRON DENSITY MAP. THE FIRST 29 AMINO ACIDS OF THE PROTEIN ENCODED BY THE OPEN READING FRAME REPRESENT THE SIGNAL SEQUENCE, WHICH IS REMOVED DURING MATURATION AND TRANSPORT TO THE PERIPLASMIC SPACE AND IS NOT PRESENT IN THIS CONSTRUCT. HOH 2001 2 HOH HOH 2001 A HOH 2002 2 HOH HOH 2002 A HOH 2003 2 HOH HOH 2003 A HOH 2004 2 HOH HOH 2004 A HOH 2005 2 HOH HOH 2005 A HOH 2006 2 HOH HOH 2006 A HOH 2007 2 HOH HOH 2007 A HOH 2008 2 HOH HOH 2008 A HOH 2009 2 HOH HOH 2009 A HOH 2010 2 HOH HOH 2010 A HOH 2011 2 HOH HOH 2011 A HOH 2012 2 HOH HOH 2012 A HOH 2013 2 HOH HOH 2013 A HOH 2014 2 HOH HOH 2014 A HOH 2015 2 HOH HOH 2015 A HOH 2016 2 HOH HOH 2016 A HOH 2017 2 HOH HOH 2017 A HOH 2018 2 HOH HOH 2018 A HOH 2019 2 HOH HOH 2019 A HOH 2020 2 HOH HOH 2020 A HOH 2021 2 HOH HOH 2021 A HOH 2022 2 HOH HOH 2022 A HOH 2023 2 HOH HOH 2023 A HOH 2024 2 HOH HOH 2024 A HOH 2025 2 HOH HOH 2025 A HOH 2026 2 HOH HOH 2026 A HOH 2027 2 HOH HOH 2027 A HOH 2028 2 HOH HOH 2028 A HOH 2029 2 HOH HOH 2029 A HOH 2030 2 HOH HOH 2030 A HOH 2031 2 HOH HOH 2031 A HOH 2032 2 HOH HOH 2032 A HOH 2033 2 HOH HOH 2033 A HOH 2034 2 HOH HOH 2034 A HOH 2035 2 HOH HOH 2035 A HOH 2036 2 HOH HOH 2036 A HOH 2037 2 HOH HOH 2037 A HOH 2038 2 HOH HOH 2038 A HOH 2039 2 HOH HOH 2039 A HOH 2040 2 HOH HOH 2040 A HOH 2041 2 HOH HOH 2041 A HOH 2042 2 HOH HOH 2042 A HOH 2043 2 HOH HOH 2043 A HOH 2044 2 HOH HOH 2044 A HOH 2045 2 HOH HOH 2045 A HOH 2046 2 HOH HOH 2046 A HOH 2047 2 HOH HOH 2047 A HOH 2048 2 HOH HOH 2048 A HOH 2049 2 HOH HOH 2049 A HOH 2050 2 HOH HOH 2050 A HOH 2051 2 HOH HOH 2051 A HOH 2052 2 HOH HOH 2052 A HOH 2053 2 HOH HOH 2053 A HOH 2054 2 HOH HOH 2054 A HOH 2055 2 HOH HOH 2055 A HOH 2056 2 HOH HOH 2056 A HOH 2057 2 HOH HOH 2057 A HOH 2058 2 HOH HOH 2058 A HOH 2059 2 HOH HOH 2059 A HOH 2060 2 HOH HOH 2060 A HOH 2061 2 HOH HOH 2061 A HOH 2062 2 HOH HOH 2062 A HOH 2063 2 HOH HOH 2063 A HOH 2064 2 HOH HOH 2064 A HOH 2065 2 HOH HOH 2065 A HOH 2066 2 HOH HOH 2066 A HOH 2067 2 HOH HOH 2067 A HOH 2068 2 HOH HOH 2068 A HOH 2069 2 HOH HOH 2069 A HOH 2070 2 HOH HOH 2070 A HOH 2071 2 HOH HOH 2071 A HOH 2072 2 HOH HOH 2072 A HOH 2073 2 HOH HOH 2073 A HOH 2074 2 HOH HOH 2074 A HOH 2075 2 HOH HOH 2075 A HOH 2076 2 HOH HOH 2076 A HOH 2077 2 HOH HOH 2077 A HOH 2078 2 HOH HOH 2078 A HOH 2079 2 HOH HOH 2079 A HOH 2080 2 HOH HOH 2080 A HOH 2081 2 HOH HOH 2081 A HOH 2082 2 HOH HOH 2082 A HOH 2083 2 HOH HOH 2083 A HOH 2084 2 HOH HOH 2084 A HOH 2085 2 HOH HOH 2085 A HOH 2086 2 HOH HOH 2086 A HOH 2087 2 HOH HOH 2087 A HOH 2088 2 HOH HOH 2088 A HOH 2089 2 HOH HOH 2089 A HOH 2090 2 HOH HOH 2090 A HOH 2091 2 HOH HOH 2091 A HOH 2092 2 HOH HOH 2092 A HOH 2093 2 HOH HOH 2093 A HOH 2094 2 HOH HOH 2094 A HOH 2095 2 HOH HOH 2095 A HOH 2096 2 HOH HOH 2096 A HOH 2097 2 HOH HOH 2097 A HOH 2098 2 HOH HOH 2098 A HOH 2099 2 HOH HOH 2099 A HOH 2100 2 HOH HOH 2100 A HOH 2101 2 HOH HOH 2101 A HOH 2102 2 HOH HOH 2102 A HOH 2103 2 HOH HOH 2103 A HOH 2104 2 HOH HOH 2104 A HOH 2105 2 HOH HOH 2105 A HOH 2106 2 HOH HOH 2106 A HOH 2107 2 HOH HOH 2107 A HOH 2108 2 HOH HOH 2108 A HOH 2109 2 HOH HOH 2109 A HOH 2110 2 HOH HOH 2110 A HOH 2111 2 HOH HOH 2111 A HOH 2112 2 HOH HOH 2112 A HOH 2113 2 HOH HOH 2113 A HOH 2114 2 HOH HOH 2114 A HOH 2115 2 HOH HOH 2115 A HOH 2116 2 HOH HOH 2116 A HOH 2117 2 HOH HOH 2117 A HOH 2118 2 HOH HOH 2118 A HOH 2119 2 HOH HOH 2119 A HOH 2120 2 HOH HOH 2120 A HOH 2121 2 HOH HOH 2121 A HOH 2122 2 HOH HOH 2122 A HOH 2123 2 HOH HOH 2123 A HOH 2124 2 HOH HOH 2124 A HOH 2125 2 HOH HOH 2125 A HOH 2126 2 HOH HOH 2126 A HOH 2127 2 HOH HOH 2127 A HOH 2128 2 HOH HOH 2128 A HOH 2129 2 HOH HOH 2129 A HOH 2130 2 HOH HOH 2130 A HOH 2131 2 HOH HOH 2131 A HOH 2132 2 HOH HOH 2132 A HOH 2133 2 HOH HOH 2133 A HOH 2134 2 HOH HOH 2134 A HOH 2135 2 HOH HOH 2135 A HOH 2136 2 HOH HOH 2136 A HOH 2137 2 HOH HOH 2137 A HOH 2138 2 HOH HOH 2138 A HOH 2139 2 HOH HOH 2139 A HOH 2140 2 HOH HOH 2140 A HOH 2141 2 HOH HOH 2141 A HOH 2142 2 HOH HOH 2142 A HOH 2143 2 HOH HOH 2143 A HOH 2144 2 HOH HOH 2144 A HOH 2145 2 HOH HOH 2145 A n 1 1 A n 2 2 A LEU 3 n 3 LEU 3 A ASN 4 n 4 ASN 4 A ILE 5 n 5 ILE 5 A LYS 6 n 6 LYS 6 A THR 7 n 7 THR 7 A MET 8 n 8 MET 8 A ILE 9 n 9 ILE 9 A PRO 10 n 10 PRO 10 A GLY 11 n 11 GLY 11 A VAL 12 n 12 VAL 12 A PRO 13 n 13 PRO 13 A GLN 14 n 14 GLN 14 A ILE 15 n 15 ILE 15 A ASP 16 n 16 ASP 16 A ALA 17 n 17 ALA 17 A GLU 18 n 18 GLU 18 A SER 19 n 19 SER 19 A TYR 20 n 20 TYR 20 A ILE 21 n 21 ILE 21 A LEU 22 n 22 LEU 22 A ILE 23 n 23 ILE 23 A ASP 24 n 24 ASP 24 A TYR 25 n 25 TYR 25 A ASN 26 n 26 ASN 26 A SER 27 n 27 SER 27 A GLY 28 n 28 GLY 28 A LYS 29 n 29 LYS 29 A VAL 30 n 30 VAL 30 A LEU 31 n 31 LEU 31 A ALA 32 n 32 ALA 32 A GLU 33 n 33 GLU 33 A GLN 34 n 34 GLN 34 A ASN 35 n 35 ASN 35 A ALA 36 n 36 ALA 36 A ASP 37 n 37 ASP 37 A VAL 38 n 38 VAL 38 A ARG 39 n 39 ARG 39 A ARG 40 n 40 ARG 40 A ASP 41 n 41 ASP 41 A PRO 42 n 42 PRO 42 A ALA 43 n 43 ALA 43 A SER 44 n 44 SER 44 A LEU 45 n 45 LEU 45 A THR 46 n 46 THR 46 A LYS 47 n 47 LYS 47 A MET 48 n 48 MET 48 A MET 49 n 49 MET 49 A THR 50 n 50 THR 50 A SER 51 n 51 SER 51 A TYR 52 n 52 TYR 52 A VAL 53 n 53 VAL 53 A ILE 54 n 54 ILE 54 A GLY 55 n 55 GLY 55 A GLN 56 n 56 GLN 56 A ALA 57 n 57 ALA 57 A MET 58 n 58 MET 58 A LYS 59 n 59 LYS 59 A ALA 60 n 60 ALA 60 A GLY 61 n 61 GLY 61 A LYS 62 n 62 LYS 62 A PHE 63 n 63 PHE 63 A LYS 64 n 64 LYS 64 A GLU 65 n 65 GLU 65 A THR 66 n 66 THR 66 A ASP 67 n 67 ASP 67 A LEU 68 n 68 LEU 68 A VAL 69 n 69 VAL 69 A THR 70 n 70 THR 70 A ILE 71 n 71 ILE 71 A GLY 72 n 72 GLY 72 A ASN 73 n 73 ASN 73 A n 74 74 A n 75 75 A n 76 76 A n 77 77 A n 78 78 A n 79 79 A n 80 80 A n 81 81 A n 82 82 A n 83 83 A n 84 84 A n 85 85 A n 86 86 A n 87 87 A n 88 88 A n 89 89 A n 90 90 A LEU 91 n 91 LEU 91 A LYS 92 n 92 LYS 92 A PRO 93 n 93 PRO 93 A GLY 94 n 94 GLY 94 A MET 95 n 95 MET 95 A GLN 96 n 96 GLN 96 A VAL 97 n 97 VAL 97 A PRO 98 n 98 PRO 98 A VAL 99 n 99 VAL 99 A SER 100 n 100 SER 100 A GLN 101 n 101 GLN 101 A LEU 102 n 102 LEU 102 A ILE 103 n 103 ILE 103 A ARG 104 n 104 ARG 104 A ASP 105 n 105 ASP 105 A ILE 106 n 106 ILE 106 A ASN 107 n 107 ASN 107 A LEU 108 n 108 LEU 108 A GLN 109 n 109 GLN 109 A SER 110 n 110 SER 110 A GLY 111 n 111 GLY 111 A ASN 112 n 112 ASN 112 A ASP 113 n 113 ASP 113 A ALA 114 n 114 ALA 114 A CYS 115 n 115 CYS 115 A VAL 116 n 116 VAL 116 A ALA 117 n 117 ALA 117 A MET 118 n 118 MET 118 A ALA 119 n 119 ALA 119 A ASP 120 n 120 ASP 120 A PHE 121 n 121 PHE 121 A ALA 122 n 122 ALA 122 A ALA 123 n 123 ALA 123 A GLY 124 n 124 GLY 124 A SER 125 n 125 SER 125 A GLN 126 n 126 GLN 126 A ASP 127 n 127 ASP 127 A ALA 128 n 128 ALA 128 A PHE 129 n 129 PHE 129 A VAL 130 n 130 VAL 130 A GLY 131 n 131 GLY 131 A LEU 132 n 132 LEU 132 A MET 133 n 133 MET 133 A ASN 134 n 134 ASN 134 A SER 135 n 135 SER 135 A TYR 136 n 136 TYR 136 A VAL 137 n 137 VAL 137 A ASN 138 n 138 ASN 138 A ALA 139 n 139 ALA 139 A LEU 140 n 140 LEU 140 A GLY 141 n 141 GLY 141 A LEU 142 n 142 LEU 142 A LYS 143 n 143 LYS 143 A ASN 144 n 144 ASN 144 A THR 145 n 145 THR 145 A HIS 146 n 146 HIS 146 A PHE 147 n 147 PHE 147 A GLN 148 n 148 GLN 148 A THR 149 n 149 THR 149 A VAL 150 n 150 VAL 150 A HIS 151 n 151 HIS 151 A GLY 152 n 152 GLY 152 A LEU 153 n 153 LEU 153 A ASP 154 n 154 ASP 154 A ALA 155 n 155 ALA 155 A ASP 156 n 156 ASP 156 A GLY 157 n 157 GLY 157 A GLN 158 n 158 GLN 158 A TYR 159 n 159 TYR 159 A SER 160 n 160 SER 160 A SER 161 n 161 SER 161 A ALA 162 n 162 ALA 162 A ARG 163 n 163 ARG 163 A ASP 164 n 164 ASP 164 A MET 165 n 165 MET 165 A ALA 166 n 166 ALA 166 A LEU 167 n 167 LEU 167 A ILE 168 n 168 ILE 168 A GLY 169 n 169 GLY 169 A GLN 170 n 170 GLN 170 A ALA 171 n 171 ALA 171 A LEU 172 n 172 LEU 172 A ILE 173 n 173 ILE 173 A ARG 174 n 174 ARG 174 A ASP 175 n 175 ASP 175 A VAL 176 n 176 VAL 176 A PRO 177 n 177 PRO 177 A ASN 178 n 178 ASN 178 A GLU 179 n 179 GLU 179 A TYR 180 n 180 TYR 180 A SER 181 n 181 SER 181 A ILE 182 n 182 ILE 182 A TYR 183 n 183 TYR 183 A LYS 184 n 184 LYS 184 A GLU 185 n 185 GLU 185 A LYS 186 n 186 LYS 186 A GLU 187 n 187 GLU 187 A PHE 188 n 188 PHE 188 A THR 189 n 189 THR 189 A PHE 190 n 190 PHE 190 A ASN 191 n 191 ASN 191 A GLY 192 n 192 GLY 192 A ILE 193 n 193 ILE 193 A ARG 194 n 194 ARG 194 A GLN 195 n 195 GLN 195 A LEU 196 n 196 LEU 196 A ASN 197 n 197 ASN 197 A ARG 198 n 198 ARG 198 A ASN 199 n 199 ASN 199 A GLY 200 n 200 GLY 200 A LEU 201 n 201 LEU 201 A LEU 202 n 202 LEU 202 A TRP 203 n 203 TRP 203 A ASP 204 n 204 ASP 204 A ASN 205 n 205 ASN 205 A SER 206 n 206 SER 206 A LEU 207 n 207 LEU 207 A ASN 208 n 208 ASN 208 A VAL 209 n 209 VAL 209 A ASP 210 n 210 ASP 210 A GLY 211 n 211 GLY 211 A ILE 212 n 212 ILE 212 A LYS 213 n 213 LYS 213 A THR 214 n 214 THR 214 A GLY 215 n 215 GLY 215 A HIS 216 n 216 HIS 216 A THR 217 n 217 THR 217 A ASP 218 n 218 ASP 218 A LYS 219 n 219 LYS 219 A ALA 220 n 220 ALA 220 A GLY 221 n 221 GLY 221 A TYR 222 n 222 TYR 222 A ASN 223 n 223 ASN 223 A LEU 224 n 224 LEU 224 A VAL 225 n 225 VAL 225 A ALA 226 n 226 ALA 226 A SER 227 n 227 SER 227 A ALA 228 n 228 ALA 228 A THR 229 n 229 THR 229 A GLU 230 n 230 GLU 230 A GLY 231 n 231 GLY 231 A GLN 232 n 232 GLN 232 A MET 233 n 233 MET 233 A ARG 234 n 234 ARG 234 A LEU 235 n 235 LEU 235 A ILE 236 n 236 ILE 236 A SER 237 n 237 SER 237 A ALA 238 n 238 ALA 238 A VAL 239 n 239 VAL 239 A MET 240 n 240 MET 240 A GLY 241 n 241 GLY 241 A GLY 242 n 242 GLY 242 A ARG 243 n 243 ARG 243 A THR 244 n 244 THR 244 A PHE 245 n 245 PHE 245 A LYS 246 n 246 LYS 246 A GLY 247 n 247 GLY 247 A ARG 248 n 248 ARG 248 A GLU 249 n 249 GLU 249 A ALA 250 n 250 ALA 250 A GLU 251 n 251 GLU 251 A SER 252 n 252 SER 252 A LYS 253 n 253 LYS 253 A LYS 254 n 254 LYS 254 A LEU 255 n 255 LEU 255 A LEU 256 n 256 LEU 256 A THR 257 n 257 THR 257 A TRP 258 n 258 TRP 258 A GLY 259 n 259 GLY 259 A PHE 260 n 260 PHE 260 A ARG 261 n 261 ARG 261 A PHE 262 n 262 PHE 262 A PHE 263 n 263 PHE 263 A GLU 264 n 264 GLU 264 A THR 265 n 265 THR 265 A VAL 266 n 266 VAL 266 A ASN 267 n 267 ASN 267 A PRO 268 n 268 PRO 268 A LEU 269 n 269 LEU 269 A LYS 270 n 270 LYS 270 A VAL 271 n 271 VAL 271 A GLY 272 n 272 GLY 272 A LYS 273 n 273 LYS 273 A GLU 274 n 274 GLU 274 A PHE 275 n 275 PHE 275 A ALA 276 n 276 ALA 276 A SER 277 n 277 SER 277 A GLU 278 n 278 GLU 278 A PRO 279 n 279 PRO 279 A VAL 280 n 280 VAL 280 A TRP 281 n 281 TRP 281 A PHE 282 n 282 PHE 282 A GLY 283 n 283 GLY 283 A ASP 284 n 284 ASP 284 A SER 285 n 285 SER 285 A ASP 286 n 286 ASP 286 A ARG 287 n 287 ARG 287 A ALA 288 n 288 ALA 288 A SER 289 n 289 SER 289 A LEU 290 n 290 LEU 290 A GLY 291 n 291 GLY 291 A VAL 292 n 292 VAL 292 A ASP 293 n 293 ASP 293 A LYS 294 n 294 LYS 294 A ASP 295 n 295 ASP 295 A VAL 296 n 296 VAL 296 A TYR 297 n 297 TYR 297 A LEU 298 n 298 LEU 298 A THR 299 n 299 THR 299 A ILE 300 n 300 ILE 300 A PRO 301 n 301 PRO 301 A ARG 302 n 302 ARG 302 A GLY 303 n 303 GLY 303 A ARG 304 n 304 ARG 304 A MET 305 n 305 MET 305 A LYS 306 n 306 LYS 306 A ASP 307 n 307 ASP 307 A LEU 308 n 308 LEU 308 A LYS 309 n 309 LYS 309 A ALA 310 n 310 ALA 310 A SER 311 n 311 SER 311 A TYR 312 n 312 TYR 312 A VAL 313 n 313 VAL 313 A LEU 314 n 314 LEU 314 A ASN 315 n 315 ASN 315 A SER 316 n 316 SER 316 A SER 317 n 317 SER 317 A GLU 318 n 318 GLU 318 A LEU 319 n 319 LEU 319 A HIS 320 n 320 HIS 320 A ALA 321 n 321 ALA 321 A PRO 322 n 322 PRO 322 A LEU 323 n 323 LEU 323 A GLN 324 n 324 GLN 324 A LYS 325 n 325 LYS 325 A ASN 326 n 326 ASN 326 A GLN 327 n 327 GLN 327 A VAL 328 n 328 VAL 328 A VAL 329 n 329 VAL 329 A GLY 330 n 330 GLY 330 A THR 331 n 331 THR 331 A ILE 332 n 332 ILE 332 A ASN 333 n 333 ASN 333 A PHE 334 n 334 PHE 334 A GLN 335 n 335 GLN 335 A LEU 336 n 336 LEU 336 A ASP 337 n 337 ASP 337 A GLY 338 n 338 GLY 338 A LYS 339 n 339 LYS 339 A THR 340 n 340 THR 340 A ILE 341 n 341 ILE 341 A GLU 342 n 342 GLU 342 A GLN 343 n 343 GLN 343 A ARG 344 n 344 ARG 344 A PRO 345 n 345 PRO 345 A LEU 346 n 346 LEU 346 A VAL 347 n 347 VAL 347 A VAL 348 n 348 VAL 348 A LEU 349 n 349 LEU 349 A GLN 350 n 350 GLN 350 A GLU 351 n 351 GLU 351 A ILE 352 n 352 ILE 352 A PRO 353 n 353 PRO 353 A GLU 354 n 354 GLU 354 A GLY 355 n 355 GLY 355 A ASN 356 n 356 ASN 356 A n 357 357 A n 358 358 A n 359 359 A n 360 360 A n 361 361 A n 362 362 A n 363 363 A author_and_software_defined_assembly PQS 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLN 34 A N GLN 34 A O TYR 20 A O TYR 20 A N ILE 23 A N ILE 23 A O ILE 236 A O ILE 236 A N GLY 242 A N GLY 242 A O TYR 222 A O TYR 222 A O SER 227 A O SER 227 A N ASP 210 A N ASP 210 A N VAL 69 A N VAL 69 A O VAL 97 A O VAL 97 A N PHE 190 A N PHE 190 A O ILE 193 A O ILE 193 A N LEU 269 A N LEU 269 A O VAL 296 A O VAL 296 A N VAL 313 A N VAL 313 A O THR 331 A O THR 331 A N LEU 336 A N LEU 336 A O LYS 339 A O LYS 339 A N VAL 347 A N VAL 347 A O GLY 291 A O GLY 291 A N LEU 290 A N LEU 290 A O ALA 276 A O ALA 276 A N TRP 281 A N TRP 281 A O LEU 319 A O LEU 319 1 A ASP 1 A ASP 1 1 Y 1 A ASP 2 A ASP 2 1 Y 1 A ASP 74 A ASP 74 1 Y 1 A ALA 75 A ALA 75 1 Y 1 A TRP 76 A TRP 76 1 Y 1 A ALA 77 A ALA 77 1 Y 1 A THR 78 A THR 78 1 Y 1 A GLY 79 A GLY 79 1 Y 1 A ASN 80 A ASN 80 1 Y 1 A PRO 81 A PRO 81 1 Y 1 A VAL 82 A VAL 82 1 Y 1 A PHE 83 A PHE 83 1 Y 1 A LYS 84 A LYS 84 1 Y 1 A GLY 85 A GLY 85 1 Y 1 A SER 86 A SER 86 1 Y 1 A SER 87 A SER 87 1 Y 1 A LEU 88 A LEU 88 1 Y 1 A MET 89 A MET 89 1 Y 1 A PHE 90 A PHE 90 1 Y 1 A PHE 357 A PHE 357 1 Y 1 A GLY 358 A GLY 358 1 Y 1 A ASP 359 A ASP 359 1 Y 1 A PRO 360 A PRO 360 1 Y 1 A VAL 361 A VAL 361 1 Y 1 A ILE 362 A ILE 362 1 Y 1 A ASP 363 A ASP 363 1 Y 1 A SER 27 11.39 1 A LEU 153 12.15 1 A TYR 180 -12.38 1 A ASN 315 10.20 1 A ALA 321 -14.57 1 A A GLY ILE 211 212 109.66 1 A A ALA PRO 321 322 -32.14 1 16.29 1.90 110.20 126.49 A A A CB CA C LEU LEU LEU 3 3 3 N 1 28.43 2.10 120.10 148.53 A A A CA C O LEU LEU LEU 3 3 3 N 1 -18.05 2.20 117.20 99.15 A A A CA C N LEU LEU ASN 3 3 4 Y 1 -11.60 1.60 122.70 111.10 A A A O C N LEU LEU ASN 3 3 4 Y 1 32.66 2.50 121.70 154.36 A A A C N CA LEU ASN ASN 3 4 4 Y 1 15.79 2.20 113.40 129.19 A A A CA CB CG ASN ASN ASN 4 4 4 N 1 -4.06 0.50 120.30 116.24 A A A NE CZ NH1 ARG ARG ARG 39 39 39 N 1 -10.33 0.50 120.30 109.97 A A A NE CZ NH1 ARG ARG ARG 40 40 40 N 1 13.96 0.50 120.30 134.26 A A A NE CZ NH2 ARG ARG ARG 40 40 40 N 1 6.60 0.90 118.30 124.90 A A A CB CG OD2 ASP ASP ASP 105 105 105 N 1 12.41 2.00 121.60 134.01 A A A CG CD OE1 GLN GLN GLN 126 126 126 N 1 7.07 0.90 118.30 125.37 A A A CB CG OD1 ASP ASP ASP 154 154 154 N 1 13.40 2.10 120.10 133.50 A A A CA C O ASP ASP ASP 154 154 154 N 1 -15.03 2.20 117.20 102.17 A A A CA C N ASP ASP ALA 154 154 155 Y 1 -15.08 2.20 113.40 98.32 A A A CA CB CG ASP ASP ASP 156 156 156 N 1 22.54 2.10 120.10 142.64 A A A CA C O ASP ASP ASP 156 156 156 N 1 -13.52 1.70 123.20 109.68 A A A O C N ASP ASP GLY 156 156 157 Y 1 37.14 2.10 122.30 159.44 A A A C N CA ASP GLY GLY 156 157 157 Y 1 17.08 2.50 113.10 130.18 A A A N CA C GLY GLY GLY 157 157 157 N 1 13.01 1.80 120.60 133.61 A A A CA C O GLY GLY GLY 157 157 157 N 1 14.52 2.10 111.80 126.32 A A A CG CD NE ARG ARG ARG 174 174 174 N 1 46.85 1.40 123.60 170.45 A A A CD NE CZ ARG ARG ARG 174 174 174 N 1 3.77 0.50 120.30 124.07 A A A NE CZ NH2 ARG ARG ARG 174 174 174 N 1 6.10 0.90 118.30 124.40 A A A CB CG OD2 ASP ASP ASP 175 175 175 N 1 -4.45 0.60 121.00 116.55 A A A CB CG CD2 TYR TYR TYR 183 183 183 N 1 4.37 0.60 121.00 125.37 A A A CB CG CD1 TYR TYR TYR 183 183 183 N 1 6.28 0.90 118.30 124.58 A A A CB CG OD2 ASP ASP ASP 204 204 204 N 1 8.30 0.90 118.30 126.60 A A A CB CG OD1 ASP ASP ASP 210 210 210 N 1 11.13 1.80 120.60 131.73 A A A CA C O GLY GLY GLY 211 211 211 N 1 57.04 2.50 121.70 178.74 A A A C N CA GLY ILE ILE 211 212 212 Y 1 9.01 1.40 123.60 132.61 A A A CD NE CZ ARG ARG ARG 234 234 234 N 1 -11.73 0.50 120.30 108.57 A A A NE CZ NH1 ARG ARG ARG 234 234 234 N 1 8.34 0.50 120.30 128.64 A A A NE CZ NH2 ARG ARG ARG 234 234 234 N 1 -6.23 0.50 120.30 114.07 A A A NE CZ NH1 ARG ARG ARG 243 243 243 N 1 16.58 2.10 111.80 128.38 A A A CG CD NE ARG ARG ARG 248 248 248 N 1 11.26 1.40 123.60 134.86 A A A CD NE CZ ARG ARG ARG 248 248 248 N 1 5.07 0.50 120.30 125.37 A A A NE CZ NH2 ARG ARG ARG 248 248 248 N 1 7.10 0.50 120.30 127.40 A A A NE CZ NH2 ARG ARG ARG 261 261 261 N 1 -4.23 0.70 120.80 116.57 A A A CB CG CD1 PHE PHE PHE 262 262 262 N 1 17.18 2.20 113.40 130.58 A A A CA CB CG ASP ASP ASP 284 284 284 N 1 12.36 1.50 110.50 122.86 A A A N CA CB SER SER SER 285 285 285 N 1 4.09 0.50 120.30 124.39 A A A NE CZ NH1 ARG ARG ARG 287 287 287 N 1 -13.59 2.20 111.50 97.91 A A A N CA CB VAL VAL VAL 292 292 292 N 1 15.09 2.10 111.80 126.89 A A A CG CD NE ARG ARG ARG 304 304 304 N 1 -19.15 2.10 120.10 100.95 A A A CA C O ALA ALA ALA 321 321 321 N 1 13.58 1.90 121.10 134.68 A A A O C N ALA ALA PRO 321 321 322 Y 1 -9.53 1.40 111.50 101.97 A A A CA N CD PRO PRO PRO 322 322 322 N 1 7.56 1.10 102.60 110.16 A A A N CA CB PRO PRO PRO 322 322 322 N 1 9.50 1.20 103.80 113.30 A A A N CD CG PRO PRO PRO 322 322 322 N 1 3.79 0.50 120.30 124.09 A A A NE CZ NH1 ARG ARG ARG 344 344 344 N 1 -3.44 0.50 120.30 116.86 A A A NE CZ NH2 ARG ARG ARG 344 344 344 N 1 A A N CA GLY GLY 157 157 -0.106 0.015 1.456 1.350 N 1 A A N CA ILE ILE 212 212 -0.121 0.020 1.459 1.338 N 1 A ASN 4 -11.09 -37.12 1 A ALA 43 57.60 -125.74 1 A ALA 60 -67.58 4.01 1 A PRO 93 -38.49 133.13 1 A GLN 148 -131.41 -30.37 1 A ASN 191 38.83 42.06 1 A ASN 208 -110.42 78.22 1 A ILE 212 131.18 -110.29 35.44 XPLOR USED IN EARLY STAGES OF REFINEMENT 0.283 0.199 0.207 2.3 15.0 1693 17184 10.0 95.4 8.60 0.210 RANDOM 1 THROUGHOUT 0.0 MIR 0.372 0.284 2.3 15.0 145 2751 0 0 2606 0.013 0.02 0.043 0.04 0.074 0.05 1.642 2.000 2.541 3.000 1.864 2.000 2.920 3.000 0.0244 0.03 0.148 0.150 0.191 0.30 0.257 0.30 0.187 0.30 9.8 7.0 19.9 15.0 22.8 20.0 28.41 2.300 22.400 1HD8 17239 0.06900 1 13.2000 2.520 94.8 2.30 2.38 3.300 0.29400 1 1.90 85.2 refinement REFMAC data reduction DENZO data scaling SCALEPACK phasing SHARP PENICILLIN-BINDING PROTEIN 5 (E.C.3.4.16.4) Crystal structure of a deacylation-defective mutant of penicillin-binding protein 5 at 2.3 A resolution 1 N N 2 N N A PRO 42 A PRO 42 HELX_P A LEU 45 A LEU 45 5 1 4 A THR 46 A THR 46 HELX_P A ALA 60 A ALA 60 1 2 15 A VAL 99 A VAL 99 HELX_P A SER 110 A SER 110 1 3 12 A GLY 111 A GLY 111 HELX_P A GLY 124 A GLY 124 1 4 14 A SER 125 A SER 125 HELX_P A GLY 141 A GLY 141 1 5 17 A SER 161 A SER 161 HELX_P A VAL 176 A VAL 176 1 6 16 A VAL 176 A VAL 176 HELX_P A SER 181 A SER 181 1 7 6 A ILE 182 A ILE 182 HELX_P A GLU 185 A GLU 185 5 8 4 A ASN 199 A ASN 199 HELX_P A ASP 204 A ASP 204 5 9 6 A LYS 246 A LYS 246 HELX_P A PHE 262 A PHE 262 1 10 17 A ARG 304 A ARG 304 HELX_P A LEU 308 A LEU 308 5 11 5 HYDROLASE PEPTIDOGLYCAN SYNTHESIS, PENICILLIN-BINDING PROTEIN, DD-CARBOXYPEPTIDASE, HYDROLASE DACA_ECOLI UNP 1 P04287 1HD8 PDB 1 1HD8 30 386 1HD8 1 357 P04287 A 1 1 357 358 363 1HD8 358 363 1HD8 A 2 358 363 1 GLY engineered mutation ASP 105 1HD8 A P04287 UNP 105 105 5 2 2 2 6 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel A VAL 30 A VAL 30 A GLN 34 A GLN 34 A ALA 17 A ALA 17 A ASP 24 A ASP 24 A MET 233 A MET 233 A GLY 242 A GLY 242 A GLY 221 A GLY 221 A GLU 230 A GLU 230 A VAL 209 A VAL 209 A THR 217 A THR 217 A LEU 68 A LEU 68 A THR 70 A THR 70 A GLN 96 A GLN 96 A PRO 98 A PRO 98 A GLU 187 A GLU 187 A PHE 190 A PHE 190 A ILE 193 A ILE 193 A LEU 196 A LEU 196 A PHE 263 A PHE 263 A LEU 269 A LEU 269 A VAL 296 A VAL 296 A PRO 301 A PRO 301 A LYS 309 A LYS 309 A LEU 314 A LEU 314 A VAL 328 A VAL 328 A LEU 336 A LEU 336 A LYS 339 A LYS 339 A VAL 348 A VAL 348 A ARG 287 A ARG 287 A GLY 291 A GLY 291 A ALA 276 A ALA 276 A TRP 281 A TRP 281 A LEU 319 A LEU 319 A HIS 320 A HIS 320 145 P 32