0.019664
0.000000
0.000000
0.000000
0.019664
0.000000
0.000000
0.000000
0.009276
0.00000
0.00000
0.00000
Banfield, M.
Robertson, A.
Allen, S.
Dando, J.
Tyler, S.
Bennett, G.
Brain, S.
Mason, G.
Holden, P.
Clarke, A.
Naylor, R.
Wilcock, G.
Brady, R.
Dawbarn, D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
50.854
50.854
107.808
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
C
N
138
N
O
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
N
N
152
S
C
N
153
N
C
N
154
N
O
N
155
N
C
Y
156
N
C
Y
157
N
N
Y
158
N
C
Y
159
N
C
Y
160
N
N
N
161
N
O
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
N
N
176
S
C
N
177
N
C
N
178
N
O
N
179
S
C
N
180
N
C
N
181
N
C
N
182
N
C
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
N
N
198
S
C
N
199
N
C
N
200
N
O
N
201
N
C
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
N
N
220
S
C
N
221
N
C
N
222
N
O
N
223
N
C
N
224
N
C
N
225
N
C
N
226
N
C
N
227
N
N
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
N
N
245
S
C
N
246
N
C
N
247
N
O
N
248
N
C
N
249
N
C
N
250
N
S
N
251
N
C
N
252
N
O
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
N
N
265
S
C
N
266
N
C
N
267
N
O
N
268
N
C
Y
269
N
C
Y
270
N
C
Y
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
N
275
N
O
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
C
N
293
N
C
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
N
C
N
309
N
O
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
R
C
N
323
N
O
N
324
N
C
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
N
Y
344
N
C
Y
345
N
C
Y
346
N
C
Y
347
N
C
Y
348
N
C
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
N
N
363
S
C
N
364
N
C
N
365
N
O
N
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
N
373
N
O
N
374
N
O
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
N
N
387
S
C
N
388
N
C
N
389
N
O
N
390
N
C
N
391
N
C
N
392
N
C
N
393
N
O
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
Y
153
N
sing
Y
154
N
doub
Y
155
N
doub
N
156
N
sing
Y
157
N
sing
N
158
N
sing
Y
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
doub
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
Y
261
N
doub
Y
262
N
sing
Y
263
N
sing
N
264
N
sing
Y
265
N
doub
N
266
N
sing
Y
267
N
doub
N
268
N
sing
Y
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
Y
330
N
doub
Y
331
N
sing
Y
332
N
sing
N
333
N
sing
Y
334
N
doub
Y
335
N
sing
Y
336
N
sing
N
337
N
sing
Y
338
N
sing
Y
339
N
doub
N
340
N
sing
Y
341
N
doub
N
342
N
sing
Y
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
doub
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
Y
358
N
doub
Y
359
N
sing
Y
360
N
sing
N
361
N
sing
Y
362
N
doub
N
363
N
sing
Y
364
N
doub
N
365
N
sing
Y
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
US
Biochem.Biophys.Res.Commun.
BBRCA9
0146
0006-291X
282
131
10.1006/BBRC.2001.4462
11263982
Identification and Structure of the Nerve Growth Factor Binding Site on Trka.
2001
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
290
149
10.1006/JMBI.1999.2816
10388563
Crystal Structure of the Neurotrophin-Binding Domain of Trka, Trkb and Trkc
1999
UK
Nature
NATUAS
0006
0028-0836
401
184
10.1038/43705
10490030
Crystal Structure of Nerve Growth Factor in Complex with the Ligand-Binding Domain of the Trka Receptor
1999
10.2210/pdb1he7/pdb
pdb_00001he7
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
MIRRORS
IMAGE PLATE
1999-02-15
MARRESEARCH
MIRRORS
SINGLE WAVELENGTH
M
x-ray
1
0.91
1.0
X11
EMBL/DESY, HAMBURG
0.91
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE X11
13922.378
HIGH AFFINITY NERVE GROWTH FACTOR RECEPTOR
2.7.1.112
LIGAND BINDING DOMAIN, SPANS RESIDUES 285-380
1
man
polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
32
nat
water
TRK1 TRANSFORMING TYROSINE KINASE PROTEIN, P140-TRKA, TRK-A
no
no
SHMPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTL
LAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNSTSGDPVEKKDE
SHMPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTL
LAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNSTSGDPVEKKDE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
9606
HOMO SAPIENS
CYTOPLASM
511693
ESCHERICHIA COLI
BL21
PLAMID
PET15B
1
1.94
32.4
4.70
10 MG/ML PROTEIN + 0.1-0.3M NACL, 0.1M NA-CITRATE, PH 4.6 - 4.8
diffrn_source
pdbx_unobs_or_zero_occ_atoms
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
pdbx_unobs_or_zero_occ_atoms
struct_site
repository
Initial release
Atomic model
Data collection
Derived calculations
Non-polymer description
Other
Refinement description
Structure summary
Version format compliance
Advisory
Data collection
Advisory
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2001-04-02
1
1
2015-03-18
1
2
2019-07-24
1
3
2023-12-13
_diffrn_source.pdbx_synchrotron_site
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
NGF BINDING DOMAIN OF HUMAN TRKA RECEPTOR
NGF IN COMPLEX WITH DOMAIN 5 OF THE TRKA RECEPTOR
SHEET
DETERMINATION METHOD: AUTHOR PROVIDED.
PDBE
Y
PDBE
2000-11-20
REL
REL
GOL
GLYCEROL
HOH
water
STRUCTURE PRESENTED IS OF A STRAND-SWAPPED DIMER. THE
SECOND MONOMER IS GENERATED THROUGH CRYSTALLOGRAPHIC
SYMMETRY. THIS IS NOT THE BIOLOGICALLY ACTIVE FORM OF THE
MOLECULE. IT IS ACTIVE ONLY IN THE NON-STRAND SWAPPED
STATE.
THIS ENTRY IS A SPLICE VARIANT OF THE TRKA_HUMAN (P04629)
SEQUENCE IN WHICH RESIDUES 393-398 ARE NOT PRESENT
1WWA
PDB ENTRY 1WWA
PDB
experimental model
GOL
1389
2
GOL
GOL
1389
A
HOH
2001
3
HOH
HOH
2001
A
HOH
2002
3
HOH
HOH
2002
A
HOH
2003
3
HOH
HOH
2003
A
HOH
2004
3
HOH
HOH
2004
A
HOH
2005
3
HOH
HOH
2005
A
HOH
2006
3
HOH
HOH
2006
A
HOH
2007
3
HOH
HOH
2007
A
HOH
2008
3
HOH
HOH
2008
A
HOH
2009
3
HOH
HOH
2009
A
HOH
2010
3
HOH
HOH
2010
A
HOH
2011
3
HOH
HOH
2011
A
HOH
2012
3
HOH
HOH
2012
A
HOH
2013
3
HOH
HOH
2013
A
HOH
2014
3
HOH
HOH
2014
A
HOH
2015
3
HOH
HOH
2015
A
HOH
2016
3
HOH
HOH
2016
A
HOH
2017
3
HOH
HOH
2017
A
HOH
2018
3
HOH
HOH
2018
A
HOH
2019
3
HOH
HOH
2019
A
HOH
2020
3
HOH
HOH
2020
A
HOH
2021
3
HOH
HOH
2021
A
HOH
2022
3
HOH
HOH
2022
A
HOH
2023
3
HOH
HOH
2023
A
HOH
2024
3
HOH
HOH
2024
A
HOH
2025
3
HOH
HOH
2025
A
HOH
2026
3
HOH
HOH
2026
A
HOH
2027
3
HOH
HOH
2027
A
HOH
2028
3
HOH
HOH
2028
A
HOH
2029
3
HOH
HOH
2029
A
HOH
2030
3
HOH
HOH
2030
A
HOH
2031
3
HOH
HOH
2031
A
HOH
2032
3
HOH
HOH
2032
A
SER
282
n
1
SER
282
A
HIS
283
n
2
HIS
283
A
MET
284
n
3
MET
284
A
PRO
285
n
4
PRO
285
A
ALA
286
n
5
ALA
286
A
SER
287
n
6
SER
287
A
VAL
288
n
7
VAL
288
A
GLN
289
n
8
GLN
289
A
LEU
290
n
9
LEU
290
A
HIS
291
n
10
HIS
291
A
THR
292
n
11
THR
292
A
ALA
293
n
12
ALA
293
A
VAL
294
n
13
VAL
294
A
GLU
295
n
14
GLU
295
A
MET
296
n
15
MET
296
A
HIS
297
n
16
HIS
297
A
HIS
298
n
17
HIS
298
A
TRP
299
n
18
TRP
299
A
CYS
300
n
19
CYS
300
A
ILE
301
n
20
ILE
301
A
PRO
302
n
21
PRO
302
A
PHE
303
n
22
PHE
303
A
SER
304
n
23
SER
304
A
VAL
305
n
24
VAL
305
A
ASP
306
n
25
ASP
306
A
GLY
307
n
26
GLY
307
A
GLN
308
n
27
GLN
308
A
PRO
309
n
28
PRO
309
A
ALA
310
n
29
ALA
310
A
PRO
311
n
30
PRO
311
A
SER
312
n
31
SER
312
A
LEU
313
n
32
LEU
313
A
ARG
314
n
33
ARG
314
A
TRP
315
n
34
TRP
315
A
LEU
316
n
35
LEU
316
A
PHE
317
n
36
PHE
317
A
ASN
318
n
37
ASN
318
A
GLY
319
n
38
GLY
319
A
SER
320
n
39
SER
320
A
VAL
321
n
40
VAL
321
A
LEU
322
n
41
LEU
322
A
ASN
323
n
42
ASN
323
A
GLU
324
n
43
GLU
324
A
THR
325
n
44
THR
325
A
SER
326
n
45
SER
326
A
PHE
327
n
46
PHE
327
A
ILE
328
n
47
ILE
328
A
PHE
329
n
48
PHE
329
A
THR
330
n
49
THR
330
A
GLU
331
n
50
GLU
331
A
PHE
332
n
51
PHE
332
A
LEU
333
n
52
LEU
333
A
GLU
334
n
53
GLU
334
A
PRO
335
n
54
PRO
335
A
ALA
336
n
55
ALA
336
A
ALA
337
n
56
ALA
337
A
ASN
338
n
57
ASN
338
A
GLU
339
n
58
GLU
339
A
THR
340
n
59
THR
340
A
VAL
341
n
60
VAL
341
A
ARG
342
n
61
ARG
342
A
HIS
343
n
62
HIS
343
A
GLY
344
n
63
GLY
344
A
CYS
345
n
64
CYS
345
A
LEU
346
n
65
LEU
346
A
ARG
347
n
66
ARG
347
A
LEU
348
n
67
LEU
348
A
ASN
349
n
68
ASN
349
A
GLN
350
n
69
GLN
350
A
PRO
351
n
70
PRO
351
A
THR
352
n
71
THR
352
A
HIS
353
n
72
HIS
353
A
VAL
354
n
73
VAL
354
A
ASN
355
n
74
ASN
355
A
ASN
356
n
75
ASN
356
A
GLY
357
n
76
GLY
357
A
ASN
358
n
77
ASN
358
A
TYR
359
n
78
TYR
359
A
THR
360
n
79
THR
360
A
LEU
361
n
80
LEU
361
A
LEU
362
n
81
LEU
362
A
ALA
363
n
82
ALA
363
A
ALA
364
n
83
ALA
364
A
ASN
365
n
84
ASN
365
A
PRO
366
n
85
PRO
366
A
PHE
367
n
86
PHE
367
A
GLY
368
n
87
GLY
368
A
GLN
369
n
88
GLN
369
A
ALA
370
n
89
ALA
370
A
SER
371
n
90
SER
371
A
ALA
372
n
91
ALA
372
A
SER
373
n
92
SER
373
A
ILE
374
n
93
ILE
374
A
MET
375
n
94
MET
375
A
ALA
376
n
95
ALA
376
A
ALA
377
n
96
ALA
377
A
PHE
378
n
97
PHE
378
A
MET
379
n
98
MET
379
A
ASP
380
n
99
ASP
380
A
ASN
381
n
100
ASN
381
A
PRO
382
n
101
PRO
382
A
PHE
383
n
102
PHE
383
A
GLU
384
n
103
GLU
384
A
PHE
385
n
104
PHE
385
A
ASN
386
n
105
ASN
386
A
PRO
387
n
106
PRO
387
A
GLU
388
n
107
GLU
388
A
ASP
389
n
108
ASP
389
A
n
109
390
A
n
110
391
A
n
111
392
A
n
112
399
A
n
113
400
A
n
114
401
A
n
115
402
A
n
116
403
A
n
117
404
A
n
118
405
A
n
119
406
A
n
120
407
A
n
121
408
A
n
122
409
A
n
123
410
A
n
124
411
A
n
125
412
A
n
126
413
A
software_defined_assembly
PQS
2
dimeric
4770
-42.2
13900
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
6_565
x,-y+1,-z+1/2
crystal symmetry operation
0.0000000000
50.8540000000
53.9040000000
A
N
VAL
305
A
N
VAL
24
A
O
ARG
342
A
O
ARG
61
A
N
ARG
347
A
N
ARG
66
A
O
PHE
329
A
O
PHE
48
A
N
SER
320
A
N
SER
39
A
O
PHE
317
A
O
PHE
36
A
N
LEU
316
A
N
LEU
35
A
O
THR
360
A
O
THR
79
A
N
ASN
365
A
N
ASN
84
A
O
GLY
368
A
O
GLY
87
1
A
HOH
2007
C
HOH
1
A
OG
SER
304
A
OG
SER
23
0
Y
1
A
CD
GLN
308
A
CD
GLN
27
0
Y
1
A
OE1
GLN
308
A
OE1
GLN
27
0
Y
1
A
NE2
GLN
308
A
NE2
GLN
27
0
Y
1
A
CA
ASP
389
A
CA
ASP
108
1
Y
1
A
C
ASP
389
A
C
ASP
108
1
Y
1
A
O
ASP
389
A
O
ASP
108
1
Y
1
A
CB
ASP
389
A
CB
ASP
108
1
Y
1
A
CG
ASP
389
A
CG
ASP
108
1
Y
1
A
OD1
ASP
389
A
OD1
ASP
108
1
Y
1
A
OD2
ASP
389
A
OD2
ASP
108
1
Y
1
A
PRO
390
A
PRO
109
1
Y
1
A
ILE
391
A
ILE
110
1
Y
1
A
PRO
392
A
PRO
111
1
Y
1
A
ASP
399
A
ASP
112
1
Y
1
A
THR
400
A
THR
113
1
Y
1
A
ASN
401
A
ASN
114
1
Y
1
A
SER
402
A
SER
115
1
Y
1
A
THR
403
A
THR
116
1
Y
1
A
SER
404
A
SER
117
1
Y
1
A
GLY
405
A
GLY
118
1
Y
1
A
ASP
406
A
ASP
119
1
Y
1
A
PRO
407
A
PRO
120
1
Y
1
A
VAL
408
A
VAL
121
1
Y
1
A
GLU
409
A
GLU
122
1
Y
1
A
LYS
410
A
LYS
123
1
Y
1
A
LYS
411
A
LYS
124
1
Y
1
A
ASP
412
A
ASP
125
1
Y
1
A
GLU
413
A
GLU
126
1
Y
1
-17.47
2.70
111.00
93.53
A
A
A
N
CA
C
LEU
LEU
LEU
346
346
346
N
1
A
GLU
334
-36.33
131.87
1
A
ASN
338
70.23
-31.14
1
A
ASN
381
-55.15
106.32
1
A
ASN
381
-52.14
106.32
1
A
GLU
388
-87.10
34.85
PROTEIN_REP.PARAM
WATER_REP.PARAM
GOL.PAR
45.3
-8.987
0.000
0.000
-8.987
0.000
17.974
THE FOLLOWING ATOMS WERE SET TO ZERO OCCUPANCY AS THEY WERE NOT OBSERVED IN ELECTRON DENSITY, SER A:304 ATOM: OG GLN A:308 ATOMS: CD OE1 NE2 GLU: THE C-TERMINAL RESIDUE WAS NOT SEEN IN THE DENSITY MAPS
0.276
0.237
0.237
2.0
40
992
10145
10.0
99.9
10000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1WWA
46.8
0.35
0.35
0.28
5.00
0.17
0.18
2.0
40
32
876
6
0
838
0.016
1.74
27.5
1.03
1.650
1.50
2.756
2.0
2.238
2.0
3.152
2.5
0.291
0.254
2.09
123
1109
8
10
99.9
23.9
1.900
40.000
1HE7
11819
-3.000
0.04100
1
43.2000
7.200
99.9
0.23300
1.90
1.99
4.400
1
5.70
99.7
refinement
CNS
1.0
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
Human Nerve growth factor receptor TrkA
1
N
N
2
N
N
3
N
N
IN DILUTE SOLUTION THE PROTEIN EXISTS AS A
MONOMER (NOSTRAND-SWAPPING) AND IS ACTIVE. THE
PROTEIN IS INACTIVE INTHE DIMERIC FORM SEEN IN
THE CRYSTAL. THE MATRICES FORCONTRUCTING THE DIMER
ARE GIVEN IN REMARK 350 BELOW
A
THR
352
A
THR
71
HELX_P
A
ASN
356
A
ASN
75
5
1
5
disulf
2.041
A
CYS
300
A
SG
CYS
19
1_555
A
CYS
345
A
SG
CYS
64
1_555
TRANSFERASE
TRANSFERASE, TRK-RECEPTOR, STRAND-SWAPPING, NERVE GROWTH FACTOR
A
GLN
308
A
GLN
27
1
A
PRO
309
A
PRO
28
0.29
TRKA_HUMAN
UNP
1
P04629
282
413
1HE7
282
413
P04629
A
1
1
126
1
VAL
cloning artifact
SER
282
1HE7
A
P04629
UNP
282
1
1
SER
cloning artifact
HIS
283
1HE7
A
P04629
UNP
283
2
1
PHE
cloning artifact
MET
284
1HE7
A
P04629
UNP
284
3
1
VAL
deletion
1HE7
A
P04629
UNP
393
1
SER
deletion
1HE7
A
P04629
UNP
394
1
PHE
deletion
1HE7
A
P04629
UNP
395
1
SER
deletion
1HE7
A
P04629
UNP
396
1
PRO
deletion
1HE7
A
P04629
UNP
397
1
VAL
deletion
1HE7
A
P04629
UNP
398
3
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
HIS
298
A
HIS
17
A
VAL
305
A
VAL
24
A
ARG
342
A
ARG
61
A
ASN
349
A
ASN
68
A
ILE
328
A
ILE
47
A
LEU
333
A
LEU
52
A
SER
320
A
SER
39
A
VAL
321
A
VAL
40
A
SER
312
A
SER
31
A
PHE
317
A
PHE
36
A
GLY
357
A
GLY
76
A
ASN
365
A
ASN
84
A
GLY
368
A
GLY
87
A
ALA
376
A
ALA
95
BINDING SITE FOR RESIDUE GOL A 1389
A
GOL
1389
Software
6
A
LEU
313
A
LEU
32
6
1_555
A
ARG
314
A
ARG
33
6
1_555
A
TRP
315
A
TRP
34
6
1_555
A
LEU
322
A
LEU
41
6
1_555
A
GLU
324
A
GLU
43
6
1_555
A
HOH
2032
C
HOH
6
1_555
95
P 43 2 2