0.023312
0.000000
0.000000
0.000000
0.017971
0.000000
0.000000
0.000000
0.009305
0.00000
0.00000
0.00000
Wurtele, M.
Renault, L.
Barbieri, J.T.
Wittinghofer, A.
Wolf, E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
42.897
55.646
107.472
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
NE
FEBS Lett.
FEBLAL
0165
0014-5793
491
26
10.1016/S0014-5793(01)02105-6
11226412
Structure of the Exos Gtpase Activating Domain
2001
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
2000-07-15
MARRESEARCH
MAD
M
x-ray
1
0.9789
1.0
0.9790
1.0
0.8856
1.0
1.54
1.0
BM14
ESRF
0.9789,0.9790,0.8856,1.54
SYNCHROTRON
ESRF BEAMLINE BM14
14432.834
EXOENZYME S
96-234 GTPASE-ACTIVATING PROTEIN (GAP-DOMAIN)
1
man
polymer
18.015
water
65
nat
water
EXOS
no
yes
KQ(MSE)VLQQALP(MSE)TLKGLDKASELATLTPEGLAREHSRLASGDGALRSLSTALAGIRAGSQVEESRIQAGRLLE
RSIGGIALQQWGTTGGAASQLVLDASPELRREITDQLHQV(MSE)SEVALLRQAVESEVSRVSADY
KQMVLQQALPMTLKGLDKASELATLTPEGLAREHSRLASGDGALRSLSTALAGIRAGSQVEESRIQAGRLLERSIGGIAL
QQWGTTGGAASQLVLDASPELRREITDQLHQVMSEVALLRQAVESEVSRVSADY
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
EXOS
287
PSEUDOMONAS AERUGINOSA
562
ESCHERICHIA COLI
PGEX-2T
1
2.22
44.64
5.50
MGCL2, (NH4)2SO4, PEG 6000, NA-CACODYLATE PH5.5, pH 5.50
repository
Initial release
Version format compliance
Version format compliance
1
0
2001-03-19
1
1
2011-05-08
1
2
2011-07-13
CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN THE GAP DOMAIN OF THE PSEUDOMONAS AERUGINOSA EXOS TOXIN AND HUMAN RAC
PDBE
Y
PDBE
2000-11-21
REL
HOH
water
HOH
2001
2
HOH
HOH
2001
A
HOH
2002
2
HOH
HOH
2002
A
HOH
2003
2
HOH
HOH
2003
A
HOH
2004
2
HOH
HOH
2004
A
HOH
2005
2
HOH
HOH
2005
A
HOH
2006
2
HOH
HOH
2006
A
HOH
2007
2
HOH
HOH
2007
A
HOH
2008
2
HOH
HOH
2008
A
HOH
2009
2
HOH
HOH
2009
A
HOH
2010
2
HOH
HOH
2010
A
HOH
2011
2
HOH
HOH
2011
A
HOH
2012
2
HOH
HOH
2012
A
HOH
2013
2
HOH
HOH
2013
A
HOH
2014
2
HOH
HOH
2014
A
HOH
2015
2
HOH
HOH
2015
A
HOH
2016
2
HOH
HOH
2016
A
HOH
2017
2
HOH
HOH
2017
A
HOH
2018
2
HOH
HOH
2018
A
HOH
2019
2
HOH
HOH
2019
A
HOH
2020
2
HOH
HOH
2020
A
HOH
2021
2
HOH
HOH
2021
A
HOH
2022
2
HOH
HOH
2022
A
HOH
2023
2
HOH
HOH
2023
A
HOH
2024
2
HOH
HOH
2024
A
HOH
2025
2
HOH
HOH
2025
A
HOH
2026
2
HOH
HOH
2026
A
HOH
2027
2
HOH
HOH
2027
A
HOH
2028
2
HOH
HOH
2028
A
HOH
2029
2
HOH
HOH
2029
A
HOH
2030
2
HOH
HOH
2030
A
HOH
2031
2
HOH
HOH
2031
A
HOH
2032
2
HOH
HOH
2032
A
HOH
2033
2
HOH
HOH
2033
A
HOH
2034
2
HOH
HOH
2034
A
HOH
2035
2
HOH
HOH
2035
A
HOH
2036
2
HOH
HOH
2036
A
HOH
2037
2
HOH
HOH
2037
A
HOH
2038
2
HOH
HOH
2038
A
HOH
2039
2
HOH
HOH
2039
A
HOH
2040
2
HOH
HOH
2040
A
HOH
2041
2
HOH
HOH
2041
A
HOH
2042
2
HOH
HOH
2042
A
HOH
2043
2
HOH
HOH
2043
A
HOH
2044
2
HOH
HOH
2044
A
HOH
2045
2
HOH
HOH
2045
A
HOH
2046
2
HOH
HOH
2046
A
HOH
2047
2
HOH
HOH
2047
A
HOH
2048
2
HOH
HOH
2048
A
HOH
2049
2
HOH
HOH
2049
A
HOH
2050
2
HOH
HOH
2050
A
HOH
2051
2
HOH
HOH
2051
A
HOH
2052
2
HOH
HOH
2052
A
HOH
2053
2
HOH
HOH
2053
A
HOH
2054
2
HOH
HOH
2054
A
HOH
2055
2
HOH
HOH
2055
A
HOH
2056
2
HOH
HOH
2056
A
HOH
2057
2
HOH
HOH
2057
A
HOH
2058
2
HOH
HOH
2058
A
HOH
2059
2
HOH
HOH
2059
A
HOH
2060
2
HOH
HOH
2060
A
HOH
2061
2
HOH
HOH
2061
A
HOH
2062
2
HOH
HOH
2062
A
HOH
2063
2
HOH
HOH
2063
A
HOH
2064
2
HOH
HOH
2064
A
HOH
2065
2
HOH
HOH
2065
A
LYS
102
n
1
LYS
102
A
GLN
103
n
2
GLN
103
A
MSE
104
n
3
MSE
104
A
VAL
105
n
4
VAL
105
A
LEU
106
n
5
LEU
106
A
GLN
107
n
6
GLN
107
A
GLN
108
n
7
GLN
108
A
ALA
109
n
8
ALA
109
A
LEU
110
n
9
LEU
110
A
PRO
111
n
10
PRO
111
A
MSE
112
n
11
MSE
112
A
THR
113
n
12
THR
113
A
LEU
114
n
13
LEU
114
A
LYS
115
n
14
LYS
115
A
GLY
116
n
15
GLY
116
A
LEU
117
n
16
LEU
117
A
ASP
118
n
17
ASP
118
A
LYS
119
n
18
LYS
119
A
ALA
120
n
19
ALA
120
A
SER
121
n
20
SER
121
A
GLU
122
n
21
GLU
122
A
LEU
123
n
22
LEU
123
A
ALA
124
n
23
ALA
124
A
THR
125
n
24
THR
125
A
LEU
126
n
25
LEU
126
A
THR
127
n
26
THR
127
A
PRO
128
n
27
PRO
128
A
GLU
129
n
28
GLU
129
A
GLY
130
n
29
GLY
130
A
LEU
131
n
30
LEU
131
A
ALA
132
n
31
ALA
132
A
ARG
133
n
32
ARG
133
A
GLU
134
n
33
GLU
134
A
HIS
135
n
34
HIS
135
A
SER
136
n
35
SER
136
A
ARG
137
n
36
ARG
137
A
LEU
138
n
37
LEU
138
A
ALA
139
n
38
ALA
139
A
SER
140
n
39
SER
140
A
GLY
141
n
40
GLY
141
A
ASP
142
n
41
ASP
142
A
GLY
143
n
42
GLY
143
A
ALA
144
n
43
ALA
144
A
LEU
145
n
44
LEU
145
A
ARG
146
n
45
ARG
146
A
SER
147
n
46
SER
147
A
LEU
148
n
47
LEU
148
A
SER
149
n
48
SER
149
A
THR
150
n
49
THR
150
A
ALA
151
n
50
ALA
151
A
LEU
152
n
51
LEU
152
A
ALA
153
n
52
ALA
153
A
GLY
154
n
53
GLY
154
A
ILE
155
n
54
ILE
155
A
ARG
156
n
55
ARG
156
A
ALA
157
n
56
ALA
157
A
GLY
158
n
57
GLY
158
A
SER
159
n
58
SER
159
A
GLN
160
n
59
GLN
160
A
VAL
161
n
60
VAL
161
A
GLU
162
n
61
GLU
162
A
GLU
163
n
62
GLU
163
A
SER
164
n
63
SER
164
A
ARG
165
n
64
ARG
165
A
ILE
166
n
65
ILE
166
A
GLN
167
n
66
GLN
167
A
ALA
168
n
67
ALA
168
A
GLY
169
n
68
GLY
169
A
ARG
170
n
69
ARG
170
A
LEU
171
n
70
LEU
171
A
LEU
172
n
71
LEU
172
A
GLU
173
n
72
GLU
173
A
ARG
174
n
73
ARG
174
A
SER
175
n
74
SER
175
A
ILE
176
n
75
ILE
176
A
GLY
177
n
76
GLY
177
A
GLY
178
n
77
GLY
178
A
ILE
179
n
78
ILE
179
A
ALA
180
n
79
ALA
180
A
LEU
181
n
80
LEU
181
A
GLN
182
n
81
GLN
182
A
GLN
183
n
82
GLN
183
A
TRP
184
n
83
TRP
184
A
GLY
185
n
84
GLY
185
A
THR
186
n
85
THR
186
A
THR
187
n
86
THR
187
A
GLY
188
n
87
GLY
188
A
GLY
189
n
88
GLY
189
A
ALA
190
n
89
ALA
190
A
ALA
191
n
90
ALA
191
A
SER
192
n
91
SER
192
A
GLN
193
n
92
GLN
193
A
LEU
194
n
93
LEU
194
A
VAL
195
n
94
VAL
195
A
LEU
196
n
95
LEU
196
A
ASP
197
n
96
ASP
197
A
ALA
198
n
97
ALA
198
A
SER
199
n
98
SER
199
A
PRO
200
n
99
PRO
200
A
GLU
201
n
100
GLU
201
A
LEU
202
n
101
LEU
202
A
ARG
203
n
102
ARG
203
A
ARG
204
n
103
ARG
204
A
GLU
205
n
104
GLU
205
A
ILE
206
n
105
ILE
206
A
THR
207
n
106
THR
207
A
ASP
208
n
107
ASP
208
A
GLN
209
n
108
GLN
209
A
LEU
210
n
109
LEU
210
A
HIS
211
n
110
HIS
211
A
GLN
212
n
111
GLN
212
A
VAL
213
n
112
VAL
213
A
MSE
214
n
113
MSE
214
A
SER
215
n
114
SER
215
A
GLU
216
n
115
GLU
216
A
VAL
217
n
116
VAL
217
A
ALA
218
n
117
ALA
218
A
LEU
219
n
118
LEU
219
A
LEU
220
n
119
LEU
220
A
ARG
221
n
120
ARG
221
A
GLN
222
n
121
GLN
222
A
ALA
223
n
122
ALA
223
A
VAL
224
n
123
VAL
224
A
GLU
225
n
124
GLU
225
A
SER
226
n
125
SER
226
A
GLU
227
n
126
GLU
227
A
VAL
228
n
127
VAL
228
A
SER
229
n
128
SER
229
A
ARG
230
n
129
ARG
230
A
VAL
231
n
130
VAL
231
A
SER
232
n
131
SER
232
A
ALA
233
n
132
ALA
233
A
ASP
234
n
133
ASP
234
A
TYR
235
n
134
TYR
235
A
software_defined_assembly
PQS
2
dimeric
1770
-10.9
15420
A
MSE
104
SELENOMETHIONINE
A
MSE
3
MET
A
MSE
112
SELENOMETHIONINE
A
MSE
11
MET
A
MSE
214
SELENOMETHIONINE
A
MSE
113
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_566
x,-y+1,-z+1
crystal symmetry operation
0.0000000000
55.6460000000
107.4720000000
A
N
ILE
176
A
N
ILE
75
A
O
ILE
179
A
O
ILE
78
1
-6.35
0.90
118.30
111.95
A
A
A
CB
CG
OD2
ASP
ASP
ASP
118
118
118
N
1
-3.79
0.50
120.30
116.51
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
174
174
174
N
1
A
LYS
119
-66.91
0.33
1
A
ARG
133
-66.95
-71.16
1
A
HIS
135
-24.66
-60.77
1
A
SER
136
-52.87
-95.09
1
A
ARG
137
-17.09
-61.38
1
A
LEU
138
-70.23
48.18
1
A
ALA
139
-158.43
8.79
1
A
TRP
184
-57.53
-9.81
1
A
PRO
200
-37.40
-9.10
1
A
ALA
233
-53.96
-73.02
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
WATER_REP.PARAM
WATER.TOP
ION.PARAM
ION.TOP
62.4
-13.82
0.00
0.00
28.18
0.00
-14.36
FIRST POST SUBMISSION CORRECTION C- TERMINUS NOT VISIBLE IN THE ELECTRON DENSITY MAPS.
0.265
0.012
0.257
0.257
2.40
20.00
518
5237
9.9
99.1
RANDOM
1274374.44
1
RESTRAINED
THROUGHOUT
0.0
MAD
FLAT MODEL
75.8674
0.389157
0.41
0.35
5.00
0.30
0.32
2.40
20.00
65
1065
0
0
1000
0.019
2.1
21.7
1.36
1.96
1.50
3.44
2.00
2.83
2.00
4.14
2.50
0.347
0.038
0.311
2.55
85
747
6
10.2
96.3
2.400
20.000
1HE9
5237
3.000
0.05300
1
34.0000
99.1
2.40
2.49
8.000
0.17500
1
98.4
refinement
CNS
1.0
data reduction
DENZO
data scaling
SCALEPACK
phasing
SHARP
EXOENZYME S
Crystal structure of the GAP domain of the Pseudomonas aeruginosa ExoS toxin
1
N
N
2
N
N
BIOLOGICAL_UNIT: MONOMER
A
LYS
102
A
LYS
1
HELX_P
A
ALA
109
A
ALA
8
1
1
8
A
THR
113
A
THR
12
HELX_P
A
LYS
119
A
LYS
18
1
2
7
A
ALA
120
A
ALA
19
HELX_P
A
THR
125
A
THR
24
5
3
6
A
THR
127
A
THR
26
HELX_P
A
HIS
135
A
HIS
34
1
4
9
A
GLY
143
A
GLY
42
HELX_P
A
SER
159
A
SER
58
1
5
17
A
VAL
161
A
VAL
60
HELX_P
A
ARG
174
A
ARG
73
1
6
14
A
GLN
182
A
GLN
81
HELX_P
A
TRP
184
A
TRP
83
5
7
3
A
GLY
189
A
GLY
88
HELX_P
A
ALA
198
A
ALA
97
1
8
10
A
GLU
201
A
GLU
100
HELX_P
A
VAL
213
A
VAL
112
1
9
13
A
SER
215
A
SER
114
HELX_P
A
SER
232
A
SER
131
1
10
18
covale
1.333
A
GLN
103
A
C
GLN
2
1_555
A
MSE
104
A
N
MSE
3
1_555
covale
1.333
A
MSE
104
A
C
MSE
3
1_555
A
VAL
105
A
N
VAL
4
1_555
covale
1.327
A
PRO
111
A
C
PRO
10
1_555
A
MSE
112
A
N
MSE
11
1_555
covale
1.322
A
MSE
112
A
C
MSE
11
1_555
A
THR
113
A
N
THR
12
1_555
covale
1.331
A
VAL
213
A
C
VAL
112
1_555
A
MSE
214
A
N
MSE
113
1_555
covale
1.329
A
MSE
214
A
C
MSE
113
1_555
A
SER
215
A
N
SER
114
1_555
TOXIN (EXOENZYME S)
TOXIN (EXOENZYME S), EXOS, PSEUDOMONAS AERUGINOSA, GAP, TOXIN, VIRULENCE FACTOR, SIGNAL TRANSDUCTION
Q51451
UNP
1
Q51451
102
235
1HE9
102
235
Q51451
A
1
1
134
1
LYS
cloning artifact
TYR
235
1HE9
A
Q51451
UNP
235
134
1
MET
modified residue
MSE
104
1HE9
A
Q51451
UNP
104
3
1
MET
modified residue
MSE
112
1HE9
A
Q51451
UNP
112
11
1
MET
modified residue
MSE
214
1HE9
A
Q51451
UNP
214
113
2
anti-parallel
A
SER
175
A
SER
74
A
ILE
176
A
ILE
75
A
ILE
179
A
ILE
78
A
ALA
180
A
ALA
79
20
C 2 2 21