1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Simpson, P.J.
Hefang, X.
Bolam, D.N.
White, P.
Hancock, S.M.
Gilbert, H.J.
Williamson, M.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
40
2468
10.1021/BI002564L
11327868
Evidence for Synergy between Family 2B Carbohydrate Binding Modules in Cellulomonas Fimi Xylanase 11A
2001
10.2210/pdb1heh/pdb
pdb_00001heh
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
8750.339
ENDO-1,4-BETA-XYLANASE D
3.2.1.8
XYLAN BINDING DOMAIN 2
1
man
polymer
XYLANASE D, CBM2B-2, XBD2
no
no
TGSCSVSAVRGEEWADRFNVTYSVSGSSSWVVTLGLNGGQSVQSSWNAALTGSSGTVTARPNGSGNSFGVTFYKNGSSAT
PGATCATG
TGSCSVSAVRGEEWADRFNVTYSVSGSSSWVVTLGLNGGQSVQSSWNAALTGSSGTVTARPNGSGNSFGVTFYKNGSSAT
PGATCATG
C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
JM83
sample
1708
CELLULOMONAS FIMI
469008
ESCHERICHIA COLI
BL21(DE3)
pdbx_database_status
pdbx_nmr_software
database_2
pdbx_database_status
repository
Initial release
Version format compliance
Version format compliance
Data collection
Other
Database references
Other
1
0
2001-05-10
1
1
2011-05-08
1
2
2011-07-13
1
3
2020-01-15
1
4
2023-06-14
_pdbx_database_status.status_code_cs
_pdbx_database_status.status_code_mr
_pdbx_nmr_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
C-TERMINAL XYLAN BINDING DOMAIN FROM CELLULOMONAS FIMI XYLANASE 11A (5 STRUCTURES)
INTERNAL XYLAN BINDING DOMAIN FROM C. FIMI XYN10A, R262G MUTANT
INTERNAL XYLAN BINDING DOMAIN FROM C. FIMI XYN10A, R262G MUTANT
INTERNAL XYLAN BINDING DOMAIN FROM CELLULOMONAS FIMI XYLANASE D, NMR, 5 STRUCTURES
INTERNAL XYLAN BINDING DOMAIN FROM CELLULOMONAS FIMI XYLANASE D, NMR, MINIMIZED AVERAGE STRUCTURE
PDBE
Y
PDBE
2000-11-22
REL
REL
REL
REL
ENDOHYDROLYSIS OF 1,4-BETA-D-XYLOSIDIC LINKAGES IN XYLANS.
BELONGS TO CELLULASE FAMILY G (FAMILY 11 OF GLYCOSYL
HYDROLASES).
MINIMISED AVERAGE FROM BEST 23 OUT OF 50. THE STRUCTURE WAS DETERMINED USING HETERONUCLEAR NMR SPECTROSCOPY ON A UNIFORMLY 15N-LABELLED SAMPLE OF XBD2
50
1
TOCSY
DQF-COSY
NOESY
E.COSY
HSQC
NOESY-HMQC
TOCSY-HMQC
HNHA
HNHB
5.0
pH
303
K
YASAP PROTOCOL. DETAILS IN THE JRNL CITATION.
HYBRID DISTANCE GEOMETRY/ SIMULATED ANNEALING
SODIUM PHOSPHATE 50 MM, SODIUM AZIDE 10 MM
BRUNGER
refinement
X-PLOR
3.1
structure solution
Felix
97.0
500
Bruker
DRX
600
Bruker
DRX
THR
557
n
1
THR
557
C
GLY
558
n
2
GLY
558
C
SER
559
n
3
SER
559
C
CYS
560
n
4
CYS
560
C
SER
561
n
5
SER
561
C
VAL
562
n
6
VAL
562
C
SER
563
n
7
SER
563
C
ALA
564
n
8
ALA
564
C
VAL
565
n
9
VAL
565
C
ARG
566
n
10
ARG
566
C
GLY
567
n
11
GLY
567
C
GLU
568
n
12
GLU
568
C
GLU
569
n
13
GLU
569
C
TRP
570
n
14
TRP
570
C
ALA
571
n
15
ALA
571
C
ASP
572
n
16
ASP
572
C
ARG
573
n
17
ARG
573
C
PHE
574
n
18
PHE
574
C
ASN
575
n
19
ASN
575
C
VAL
576
n
20
VAL
576
C
THR
577
n
21
THR
577
C
TYR
578
n
22
TYR
578
C
SER
579
n
23
SER
579
C
VAL
580
n
24
VAL
580
C
SER
581
n
25
SER
581
C
GLY
582
n
26
GLY
582
C
SER
583
n
27
SER
583
C
SER
584
n
28
SER
584
C
SER
585
n
29
SER
585
C
TRP
586
n
30
TRP
586
C
VAL
587
n
31
VAL
587
C
VAL
588
n
32
VAL
588
C
THR
589
n
33
THR
589
C
LEU
590
n
34
LEU
590
C
GLY
591
n
35
GLY
591
C
LEU
592
n
36
LEU
592
C
ASN
593
n
37
ASN
593
C
GLY
594
n
38
GLY
594
C
GLY
595
n
39
GLY
595
C
GLN
596
n
40
GLN
596
C
SER
597
n
41
SER
597
C
VAL
598
n
42
VAL
598
C
GLN
599
n
43
GLN
599
C
SER
600
n
44
SER
600
C
SER
601
n
45
SER
601
C
TRP
602
n
46
TRP
602
C
ASN
603
n
47
ASN
603
C
ALA
604
n
48
ALA
604
C
ALA
605
n
49
ALA
605
C
LEU
606
n
50
LEU
606
C
THR
607
n
51
THR
607
C
GLY
608
n
52
GLY
608
C
SER
609
n
53
SER
609
C
SER
610
n
54
SER
610
C
GLY
611
n
55
GLY
611
C
THR
612
n
56
THR
612
C
VAL
613
n
57
VAL
613
C
THR
614
n
58
THR
614
C
ALA
615
n
59
ALA
615
C
ARG
616
n
60
ARG
616
C
PRO
617
n
61
PRO
617
C
ASN
618
n
62
ASN
618
C
GLY
619
n
63
GLY
619
C
SER
620
n
64
SER
620
C
GLY
621
n
65
GLY
621
C
ASN
622
n
66
ASN
622
C
SER
623
n
67
SER
623
C
PHE
624
n
68
PHE
624
C
GLY
625
n
69
GLY
625
C
VAL
626
n
70
VAL
626
C
THR
627
n
71
THR
627
C
PHE
628
n
72
PHE
628
C
TYR
629
n
73
TYR
629
C
LYS
630
n
74
LYS
630
C
ASN
631
n
75
ASN
631
C
GLY
632
n
76
GLY
632
C
SER
633
n
77
SER
633
C
SER
634
n
78
SER
634
C
ALA
635
n
79
ALA
635
C
THR
636
n
80
THR
636
C
PRO
637
n
81
PRO
637
C
GLY
638
n
82
GLY
638
C
ALA
639
n
83
ALA
639
C
THR
640
n
84
THR
640
C
CYS
641
n
85
CYS
641
C
ALA
642
n
86
ALA
642
C
THR
643
n
87
THR
643
C
GLY
644
n
88
GLY
644
C
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
C
O
SER
563
A
O
SER
7
C
N
SER
579
A
N
SER
23
C
N
TYR
578
A
N
TYR
22
C
O
PHE
624
A
O
PHE
68
C
N
GLY
625
A
N
GLY
69
C
O
TRP
602
A
O
TRP
46
C
O
THR
640
A
O
THR
84
C
N
THR
589
A
N
THR
33
C
N
LEU
590
A
N
LEU
34
C
O
VAL
613
A
O
VAL
57
C
N
ARG
616
A
N
ARG
60
C
O
ALA
605
A
O
ALA
49
1
C
ARG
566
0.218
SIDE CHAIN
1
C
ARG
573
0.142
SIDE CHAIN
1
C
ARG
616
0.314
SIDE CHAIN
1
C
GLU
568
-40.22
161.58
1
C
SER
581
-101.64
-70.67
1
C
SER
583
-85.43
46.92
1
C
VAL
587
-160.03
32.52
1
C
LEU
592
-65.02
-167.93
1
C
ALA
604
162.94
168.23
1
C
SER
609
-156.93
22.83
1
C
SER
610
169.89
108.47
1
C
ASN
618
-152.25
20.98
1
C
SER
620
164.17
113.67
1
C
ASN
631
43.06
29.60
1
C
SER
633
-88.42
-148.57
1
C
SER
634
-171.50
-112.93
1
C
CYS
641
-160.38
69.62
MINIMIZED AVERAGE
C-terminal xylan binding domain from Cellulomonas fimi xylanase 11A
1
N
N
disulf
2.024
C
CYS
560
A
SG
CYS
4
1_555
C
CYS
641
A
SG
CYS
85
1_555
HYDROLASE(XYLAN DEGRADATION)
HYDROLASE(XYLAN DEGRADATION), HYDROLASE, XYLAN BINDING DOMAIN, XYLANASE, BETA-SHEET
XYND_CELFI
UNP
1
P54865
557
644
1HEH
557
644
P54865
C
1
1
88
4
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
C
VAL
562
A
VAL
6
C
GLU
568
A
GLU
12
C
ARG
573
A
ARG
17
C
SER
581
A
SER
25
C
SER
623
A
SER
67
C
TYR
629
A
TYR
73
C
VAL
598
A
VAL
42
C
TRP
602
A
TRP
46
C
GLY
638
A
GLY
82
C
ALA
642
A
ALA
86
C
VAL
587
A
VAL
31
C
LEU
592
A
LEU
36
C
VAL
613
A
VAL
57
C
ARG
616
A
ARG
60
C
ALA
605
A
ALA
49
C
GLY
608
A
GLY
52
1
P 1