0.017950 0.000000 0.005134 0.000000 0.019550 0.000000 0.000000 0.000000 0.026351 0.00000 0.00000 0.00000 Jing, H. Babu, Y.S. Moore, D. Kilpatrick, J.M. Liu, X.-Y. Volanakis, J.E. Narayana, S.V.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 105.96 90.00 55.710 51.150 39.470 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 282 1061 1081 10.1006/jmbi.1998.2089 9753554 Structures of native and complexed complement factor D: implications of the atypical His57 conformation and self-inhibitory loop in the regulation of specific serine protease activity. 1998 US Protein Sci. PRCIEI 0795 0961-8368 5 553 Complement Factor D, a Novel Serine Protease 1996 US J.Biol.Chem. JBCHA3 0071 0021-9258 270 24399 Crystal Structure of a Complement Factor D Mutant Expressing Enhanced Catalytic Activity 1995 UK J.Mol.Biol. JMOBAK 0070 0022-2836 235 695 Structure of Human Factor D. A Complement System Protein at 2.0 A Resolution 1994 UK J.Mol.Biol. JMOBAK 0070 0022-2836 219 1 Crystallization and Preliminary X-Ray Investigation of Factor D of Human Complement 1991 10.2210/pdb1hfd/pdb pdb_00001hfd 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 293 1 COLLIMATOR AREA DETECTOR 1993-06 SIEMENS GRAPHITE(002) M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RUH2R 24438.807 COMPLEMENT FACTOR D 3.4.21.46 1 nat polymer 18.015 water 75 nat water no no ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPD SQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHH DGAITERLMCAESNRRDSCKGDSGGPLVCGGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLA ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPD SQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHH DGAITERLMCAESNRRDSCKGDSGGPLVCGGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample 9606 Homo sapiens 4 2.15 44 5.4 pH 5.4 database_2 pdbx_database_status pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Database references Other Refinement description 1 0 1999-06-22 1 1 2008-03-24 1 2 2011-07-13 1 3 2023-08-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site Y BNL 1998-06-18 REL REL HOH water 1DSU PDB ENTRY 1DSU MOLECULE B PDB experimental model HOH 301 2 HOH HOH 301 A HOH 302 2 HOH HOH 302 A HOH 303 2 HOH HOH 303 A HOH 304 2 HOH HOH 304 A HOH 305 2 HOH HOH 305 A HOH 306 2 HOH HOH 306 A HOH 307 2 HOH HOH 307 A HOH 308 2 HOH HOH 308 A HOH 309 2 HOH HOH 309 A HOH 310 2 HOH HOH 310 A HOH 311 2 HOH HOH 311 A HOH 312 2 HOH HOH 312 A HOH 313 2 HOH HOH 313 A HOH 314 2 HOH HOH 314 A HOH 315 2 HOH HOH 315 A HOH 316 2 HOH HOH 316 A HOH 317 2 HOH HOH 317 A HOH 318 2 HOH HOH 318 A HOH 319 2 HOH HOH 319 A HOH 320 2 HOH HOH 320 A HOH 321 2 HOH HOH 321 A HOH 322 2 HOH HOH 322 A HOH 323 2 HOH HOH 323 A HOH 324 2 HOH HOH 324 A HOH 325 2 HOH HOH 325 A HOH 326 2 HOH HOH 326 A HOH 327 2 HOH HOH 327 A HOH 328 2 HOH HOH 328 A HOH 329 2 HOH HOH 329 A HOH 330 2 HOH HOH 330 A HOH 331 2 HOH HOH 331 A HOH 332 2 HOH HOH 332 A HOH 333 2 HOH HOH 333 A HOH 334 2 HOH HOH 334 A HOH 335 2 HOH HOH 335 A HOH 336 2 HOH HOH 336 A HOH 337 2 HOH HOH 337 A HOH 338 2 HOH HOH 338 A HOH 339 2 HOH HOH 339 A HOH 340 2 HOH HOH 340 A HOH 341 2 HOH HOH 341 A HOH 342 2 HOH HOH 342 A HOH 343 2 HOH HOH 343 A HOH 344 2 HOH HOH 344 A HOH 345 2 HOH HOH 345 A HOH 346 2 HOH HOH 346 A HOH 348 2 HOH HOH 348 A HOH 349 2 HOH HOH 349 A HOH 350 2 HOH HOH 350 A HOH 351 2 HOH HOH 351 A HOH 352 2 HOH HOH 352 A HOH 353 2 HOH HOH 353 A HOH 354 2 HOH HOH 354 A HOH 355 2 HOH HOH 355 A HOH 356 2 HOH HOH 356 A HOH 357 2 HOH HOH 357 A HOH 358 2 HOH HOH 358 A HOH 359 2 HOH HOH 359 A HOH 360 2 HOH HOH 360 A HOH 361 2 HOH HOH 361 A HOH 362 2 HOH HOH 362 A HOH 363 2 HOH HOH 363 A HOH 364 2 HOH HOH 364 A HOH 365 2 HOH HOH 365 A HOH 366 2 HOH HOH 366 A HOH 367 2 HOH HOH 367 A HOH 368 2 HOH HOH 368 A HOH 369 2 HOH HOH 369 A HOH 370 2 HOH HOH 370 A HOH 371 2 HOH HOH 371 A HOH 372 2 HOH HOH 372 A HOH 373 2 HOH HOH 373 A HOH 374 2 HOH HOH 374 A HOH 375 2 HOH HOH 375 A HOH 376 2 HOH HOH 376 A ILE 16 n 1 ILE 16 A LEU 17 n 2 LEU 17 A GLY 18 n 3 GLY 18 A GLY 19 n 4 GLY 19 A ARG 20 n 5 ARG 20 A GLU 21 n 6 GLU 21 A ALA 22 n 7 ALA 22 A GLU 23 n 8 GLU 23 A ALA 24 n 9 ALA 24 A HIS 25 n 10 HIS 25 A ALA 26 n 11 ALA 26 A ARG 27 n 12 ARG 27 A PRO 28 n 13 PRO 28 A TYR 29 n 14 TYR 29 A MET 30 n 15 MET 30 A ALA 31 n 16 ALA 31 A SER 32 n 17 SER 32 A VAL 33 n 18 VAL 33 A GLN 34 n 19 GLN 34 A LEU 35 n 20 LEU 35 A ASN 36 n 21 ASN 36 A GLY 38 n 22 GLY 38 A ALA 39 n 23 ALA 39 A HIS 40 n 24 HIS 40 A LEU 41 n 25 LEU 41 A CYS 42 n 26 CYS 42 A GLY 43 n 27 GLY 43 A GLY 44 n 28 GLY 44 A VAL 45 n 29 VAL 45 A LEU 46 n 30 LEU 46 A VAL 47 n 31 VAL 47 A ALA 48 n 32 ALA 48 A GLU 49 n 33 GLU 49 A GLN 50 n 34 GLN 50 A TRP 51 n 35 TRP 51 A VAL 52 n 36 VAL 52 A LEU 53 n 37 LEU 53 A SER 54 n 38 SER 54 A ALA 55 n 39 ALA 55 A ALA 56 n 40 ALA 56 A HIS 57 n 41 HIS 57 A CYS 58 n 42 CYS 58 A LEU 59 n 43 LEU 59 A GLU 60 n 44 GLU 60 A ASP 61 n 45 ASP 61 A ALA 61 n 46 A ALA 61 A ALA 61 n 47 B ALA 61 A ASP 61 n 48 C ASP 61 A GLY 62 n 49 GLY 62 A LYS 63 n 50 LYS 63 A VAL 64 n 51 VAL 64 A GLN 65 n 52 GLN 65 A VAL 66 n 53 VAL 66 A LEU 67 n 54 LEU 67 A LEU 68 n 55 LEU 68 A GLY 69 n 56 GLY 69 A ALA 70 n 57 ALA 70 A HIS 71 n 58 HIS 71 A SER 72 n 59 SER 72 A LEU 73 n 60 LEU 73 A SER 74 n 61 SER 74 A GLN 75 n 62 GLN 75 A PRO 76 n 63 PRO 76 A GLU 77 n 64 GLU 77 A PRO 78 n 65 PRO 78 A SER 79 n 66 SER 79 A LYS 80 n 67 LYS 80 A ARG 81 n 68 ARG 81 A LEU 82 n 69 LEU 82 A TYR 83 n 70 TYR 83 A ASP 84 n 71 ASP 84 A VAL 85 n 72 VAL 85 A LEU 86 n 73 LEU 86 A ARG 87 n 74 ARG 87 A ALA 88 n 75 ALA 88 A VAL 89 n 76 VAL 89 A PRO 90 n 77 PRO 90 A HIS 91 n 78 HIS 91 A PRO 92 n 79 PRO 92 A ASP 93 n 80 ASP 93 A SER 94 n 81 SER 94 A GLN 95 n 82 GLN 95 A PRO 96 n 83 PRO 96 A ASP 97 n 84 ASP 97 A THR 98 n 85 THR 98 A ILE 99 n 86 ILE 99 A ASP 100 n 87 ASP 100 A HIS 101 n 88 HIS 101 A ASP 102 n 89 ASP 102 A LEU 103 n 90 LEU 103 A LEU 104 n 91 LEU 104 A LEU 105 n 92 LEU 105 A LEU 106 n 93 LEU 106 A GLN 107 n 94 GLN 107 A LEU 108 n 95 LEU 108 A SER 109 n 96 SER 109 A GLU 110 n 97 GLU 110 A LYS 111 n 98 LYS 111 A ALA 112 n 99 ALA 112 A THR 113 n 100 THR 113 A LEU 114 n 101 LEU 114 A GLY 115 n 102 GLY 115 A PRO 118 n 103 PRO 118 A ALA 119 n 104 ALA 119 A VAL 120 n 105 VAL 120 A ARG 121 n 106 ARG 121 A PRO 122 n 107 PRO 122 A LEU 123 n 108 LEU 123 A PRO 124 n 109 PRO 124 A TRP 124 n 110 A TRP 124 A GLN 125 n 111 GLN 125 A ARG 126 n 112 ARG 126 A VAL 127 n 113 VAL 127 A ASP 128 n 114 ASP 128 A ARG 129 n 115 ARG 129 A ASP 129 n 116 A ASP 129 A VAL 130 n 117 VAL 130 A ALA 131 n 118 ALA 131 A PRO 132 n 119 PRO 132 A GLY 133 n 120 GLY 133 A THR 134 n 121 THR 134 A LEU 135 n 122 LEU 135 A CYS 136 n 123 CYS 136 A ASP 137 n 124 ASP 137 A VAL 138 n 125 VAL 138 A ALA 139 n 126 ALA 139 A GLY 140 n 127 GLY 140 A TRP 141 n 128 TRP 141 A GLY 142 n 129 GLY 142 A ILE 143 n 130 ILE 143 A VAL 144 n 131 VAL 144 A ASN 145 n 132 ASN 145 A HIS 146 n 133 HIS 146 A ALA 147 n 134 ALA 147 A GLY 149 n 135 GLY 149 A ARG 150 n 136 ARG 150 A ARG 151 n 137 ARG 151 A PRO 152 n 138 PRO 152 A ASP 153 n 139 ASP 153 A SER 154 n 140 SER 154 A LEU 155 n 141 LEU 155 A GLN 156 n 142 GLN 156 A HIS 157 n 143 HIS 157 A VAL 158 n 144 VAL 158 A LEU 159 n 145 LEU 159 A LEU 160 n 146 LEU 160 A PRO 161 n 147 PRO 161 A VAL 162 n 148 VAL 162 A LEU 163 n 149 LEU 163 A ASP 164 n 150 ASP 164 A ARG 165 n 151 ARG 165 A ALA 166 n 152 ALA 166 A THR 167 n 153 THR 167 A CYS 168 n 154 CYS 168 A ASN 169 n 155 ASN 169 A ARG 170 n 156 ARG 170 A ARG 170 n 157 A ARG 170 A THR 170 n 158 B THR 170 A HIS 171 n 159 HIS 171 A HIS 172 n 160 HIS 172 A ASP 173 n 161 ASP 173 A GLY 174 n 162 GLY 174 A ALA 175 n 163 ALA 175 A ILE 176 n 164 ILE 176 A THR 177 n 165 THR 177 A GLU 178 n 166 GLU 178 A ARG 179 n 167 ARG 179 A LEU 180 n 168 LEU 180 A MET 181 n 169 MET 181 A CYS 182 n 170 CYS 182 A ALA 183 n 171 ALA 183 A GLU 184 n 172 GLU 184 A SER 185 n 173 SER 185 A ASN 186 n 174 ASN 186 A ARG 187 n 175 ARG 187 A ARG 188 n 176 ARG 188 A ASP 189 n 177 ASP 189 A SER 190 n 178 SER 190 A CYS 191 n 179 CYS 191 A LYS 192 n 180 LYS 192 A GLY 193 n 181 GLY 193 A ASP 194 n 182 ASP 194 A SER 195 n 183 SER 195 A GLY 196 n 184 GLY 196 A GLY 197 n 185 GLY 197 A PRO 198 n 186 PRO 198 A LEU 199 n 187 LEU 199 A VAL 200 n 188 VAL 200 A CYS 201 n 189 CYS 201 A GLY 202 n 190 GLY 202 A GLY 207 n 191 GLY 207 A VAL 208 n 192 VAL 208 A LEU 209 n 193 LEU 209 A GLU 210 n 194 GLU 210 A GLY 211 n 195 GLY 211 A VAL 212 n 196 VAL 212 A VAL 213 n 197 VAL 213 A THR 214 n 198 THR 214 A SER 215 n 199 SER 215 A GLY 216 n 200 GLY 216 A SER 217 n 201 SER 217 A ARG 218 n 202 ARG 218 A VAL 219 n 203 VAL 219 A CYS 220 n 204 CYS 220 A GLY 221 n 205 GLY 221 A ASN 222 n 206 ASN 222 A ARG 223 n 207 ARG 223 A LYS 223 n 208 A LYS 223 A LYS 224 n 209 LYS 224 A PRO 225 n 210 PRO 225 A GLY 226 n 211 GLY 226 A ILE 227 n 212 ILE 227 A TYR 228 n 213 TYR 228 A THR 229 n 214 THR 229 A ARG 230 n 215 ARG 230 A VAL 231 n 216 VAL 231 A ALA 232 n 217 ALA 232 A SER 233 n 218 SER 233 A TYR 234 n 219 TYR 234 A ALA 235 n 220 ALA 235 A ALA 236 n 221 ALA 236 A TRP 237 n 222 TRP 237 A ILE 238 n 223 ILE 238 A ASP 239 n 224 ASP 239 A SER 240 n 225 SER 240 A VAL 241 n 226 VAL 241 A LEU 242 n 227 LEU 242 A ALA 243 n 228 ALA 243 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ARG 81 A O ARG 68 A N LEU 68 A N LEU 55 A O GLN 65 A O GLN 52 A N GLN 34 A N GLN 19 A O ALA 31 A O ALA 16 A N GLY 44 A N GLY 28 A O VAL 45 A O VAL 29 A N LEU 53 A N LEU 37 A O VAL 52 A O VAL 36 A N LEU 106 A N LEU 93 A O LEU 105 A O LEU 92 A N VAL 89 A N VAL 76 A O CYS 136 A O CYS 123 A N LEU 160 A N LEU 146 A O MET 181 A O MET 169 A N TYR 228 A N TYR 213 A O THR 229 A O THR 214 A N VAL 212 A N VAL 196 A O VAL 208 A O VAL 192 A N CYS 201 A N CYS 189 1 3.69 0.50 120.30 123.99 A A A NE CZ NH2 ARG ARG ARG 150 150 150 N 1 3.65 0.50 120.30 123.95 A A A NE CZ NH2 ARG ARG ARG 151 151 151 N 1 3.55 0.50 120.30 123.85 A A A NE CZ NH2 ARG ARG ARG 187 187 187 N 1 3.51 0.50 120.30 123.81 A A A NE CZ NH2 ARG ARG ARG 188 188 188 N 1 10.57 1.50 119.30 129.87 A A A C N CA GLY PRO PRO 197 198 198 Y 1 3.61 0.50 120.30 123.91 A A A NE CZ NH2 ARG ARG ARG 223 223 223 N 1 A SER 54 -145.38 -158.99 A 1 A ALA 61 -78.50 26.59 1 A HIS 71 -134.22 -54.18 1 A PRO 96 -64.39 4.63 1 A HIS 171 -108.47 -108.99 1 A ASP 173 19.62 75.01 1 A ARG 187 71.70 -29.70 1 A SER 215 -109.81 51.84 PROTEIN_REP.PARAM TOPHCSDX.PRO TOPH19.SOL TOPH19.PEP 22.0 BULK SOLVENT CORRECTION WAS APPLIED 0.216 0.007 0.174 0.174 2.3 20.0 936 8925 10.0 95 RANDOM 1000000 0.001 1 THROUGHOUT 2.0 MOLECULAR REPLACEMENT PDB ENTRY 1DSU MOLECULE B 0.29 0.23 5.0 0.28 0.22 2.3 20.0 75 1787 0 0 1712 0.012 1.605 28.58 0.891 0.256 0.027 0.215 2.4 90 808 8 10.0 78.5 15.7 2.3 20 1HFD 9267 2 0.083 1 15 4.0 95 0.242 2.3 2.4 2.8 4.0 79 data collection XENGEN data reduction XENGEN model building X-PLOR 3.851 refinement X-PLOR 3.851 data scaling XENGEN phasing X-PLOR 3.851 HUMAN COMPLEMENT FACTOR D IN A P21 CRYSTAL FORM 1 N N 2 N N A ALA 56 A ALA 40 HELX_P A CYS 58 A CYS 42 5 1 3 A ARG 165 A ARG 151 HELX_P A CYS 168 A CYS 154 1 2 4 A ALA 232 A ALA 217 HELX_P A VAL 241 A VAL 226 5 3 10 disulf 2.038 A CYS 42 A SG CYS 26 1_555 A CYS 58 A SG CYS 42 1_555 disulf 2.031 A CYS 136 A SG CYS 123 1_555 A CYS 201 A SG CYS 189 1_555 disulf 2.027 A CYS 168 A SG CYS 154 1_555 A CYS 182 A SG CYS 170 1_555 disulf 1.987 A CYS 191 A SG CYS 179 1_555 A CYS 220 A SG CYS 204 1_555 SERINE PROTEASE SERINE PROTEASE, HYDROLASE, COMPLEMENT, FACTOR D, CATALYTIC TRIAD, SELF-REGULATION CFAD_HUMAN UNP 1 1 P00746 MHSSVYFAVLVLLGAAACAARPRGRILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLL GAHSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAG RRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAESNRRDSCKGDSGGPLVCGGVLEGVVTSGSRVCGNRKKPGIYTR VASYAAWIDSVLA 26 253 1HFD 16 243 P00746 A 1 1 228 7 2 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ARG 81 A ARG 68 A ASP 84 A ASP 71 A VAL 64 A VAL 51 A LEU 68 A LEU 55 A MET 30 A MET 15 A LEU 35 A LEU 20 A HIS 40 A HIS 24 A ALA 48 A ALA 32 A TRP 51 A TRP 35 A SER 54 A SER 38 A LEU 104 A LEU 91 A LEU 108 A LEU 95 A VAL 85 A VAL 72 A PRO 90 A PRO 77 A LEU 135 A LEU 122 A GLY 140 A GLY 127 A GLN 156 A GLN 142 A PRO 161 A PRO 147 A LEU 180 A LEU 168 A ALA 183 A ALA 171 A GLY 226 A GLY 211 A ARG 230 A ARG 215 A VAL 208 A VAL 192 A VAL 213 A VAL 197 A PRO 198 A PRO 186 A CYS 201 A CYS 189 CATALYTIC TRIAD. Unknown 3 A HIS 57 A HIS 41 3 1_555 A ASP 102 A ASP 89 3 1_555 A SER 195 A SER 183 3 1_555 4 P 1 21 1