0.034548
0.000000
0.012486
0.000000
0.031340
0.000000
0.000000
0.000000
0.030612
0.00000
0.00000
0.00000
Lehmann, C.
Vertessy, L.
Sheldrick, G.M.
Dauter, Z.
Dauter, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
109.87
90.00
28.945
31.908
34.735
C8 H9 N O4
183.161
(2S)-amino(3,5-dihydroxyphenyl)ethanoic acid
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C6 H12 O6
180.156
beta-D-glucopyranose
beta-D-glucose; D-glucose; glucose
D-saccharide, beta linking
C6 H8 O7
192.124
CITRIC ACID
non-polymer
C7 H15 N O3
161.199
4-epi-vancosamine
(1R,3S,4R,5S)-3-amino-2,3,6-trideoxy-3-methyl-alpha-L-arabino-hexopyranose
L-saccharide, alpha linking
C8 H9 N O3
167.162
(2R)-amino(4-hydroxyphenyl)ethanoic acid
D-peptide linking
H2 O
18.015
WATER
non-polymer
C7 H15 N O2
145.199
N-methyl-D-leucine
D-peptide linking
C9 H11 N O4
197.188
n
(betaR)-beta-hydroxy-L-Tyrosine
L-peptide linking
C9 H10 Cl N O4
231.633
(betaR)-3-CHLORO-BETA-HYDROXY-D-TYROSINE
D-peptide linking
C6 H12 O5
164.156
alpha-L-rhamnopyranose
alpha-L-rhamnose; 6-deoxy-alpha-L-mannopyranose; L-rhamnose; rhamnose
L-saccharide, alpha linking
N
1
N
N
N
2
N
O
Y
3
N
C
Y
4
N
C
Y
5
N
C
Y
6
N
C
N
7
N
O
Y
8
N
C
Y
9
N
C
N
10
S
C
N
11
N
C
N
12
N
O
N
13
N
O
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
N
N
24
S
C
N
25
N
C
N
26
N
O
N
27
N
C
N
28
N
C
N
29
N
O
N
30
N
N
N
31
N
O
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
R
C
N
41
S
C
N
42
S
C
N
43
R
C
N
44
N
C
N
45
R
C
N
46
N
O
N
47
N
O
N
48
N
O
N
49
N
O
N
50
N
O
N
51
N
O
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
C
N
65
N
O
N
66
N
O
N
67
N
C
N
68
N
C
N
69
N
O
N
70
N
C
N
71
N
C
N
72
N
O
N
73
N
O
N
74
N
C
N
75
N
O
N
76
N
O
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
R
C
N
86
N
C
N
87
S
C
N
88
R
C
N
89
S
C
N
90
N
O
N
91
N
C
N
92
N
N
N
93
N
O
N
94
N
C
N
95
N
O
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
N
N
112
R
C
N
113
N
C
N
114
N
O
N
115
N
O
Y
116
N
C
Y
117
N
C
Y
118
N
C
Y
119
N
C
N
120
N
O
Y
121
N
C
Y
122
N
C
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
N
N
136
N
C
N
137
R
C
N
138
N
C
N
139
N
O
N
140
N
C
N
141
N
C
N
142
N
C
N
143
N
C
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
N
N
161
S
C
N
162
N
C
N
163
N
O
N
164
R
C
N
165
N
O
Y
166
N
C
Y
167
N
C
Y
168
N
C
Y
169
N
C
Y
170
N
C
Y
171
N
C
N
172
N
O
N
173
N
O
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
N
N
186
R
C
N
187
N
C
N
188
N
O
N
189
N
O
N
190
R
C
N
191
N
O
Y
192
N
C
Y
193
N
C
Y
194
N
C
Y
195
N
C
N
196
N
CL
Y
197
N
C
Y
198
N
C
N
199
N
O
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
R
C
N
211
R
C
N
212
R
C
N
213
R
C
N
214
S
C
N
215
N
C
N
216
N
O
N
217
N
O
N
218
N
O
N
219
N
O
N
220
N
O
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
1
N
sing
N
2
N
sing
Y
3
N
sing
Y
4
N
doub
Y
5
N
doub
Y
6
N
sing
N
7
N
sing
Y
8
N
doub
Y
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
doub
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
doub
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
doub
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
doub
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
Y
118
N
doub
Y
119
N
sing
Y
120
N
sing
N
121
N
sing
Y
122
N
doub
N
123
N
sing
N
124
N
sing
Y
125
N
sing
N
126
N
sing
Y
127
N
doub
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
Y
163
N
sing
Y
164
N
doub
Y
165
N
doub
Y
166
N
sing
Y
167
N
sing
Y
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
Y
189
N
doub
Y
190
N
sing
Y
191
N
sing
Y
192
N
doub
Y
193
N
doub
Y
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
SZ
Helv.Chim.Acta
HCACAV
0010
0018-019X
86
1478
10.1002/HLCA.200390131
Structures of Four Crystal Forms of Decaplanin
2003
10.2210/pdb1hhc/pdb
pdb_00001hhc
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
133.0
1
CCD
1998-12-15
SIEMENS
GRAPHITE
SINGLE WAVELENGTH
M
x-ray
1
0.71073
1.0
0.71073
SEALED TUBE
SIEMENS-STOE-HUBER
1115.532
DECAPLANIN
4
nat
polymer
326.297
alpha-L-rhamnopyranose-(1-2)-beta-D-glucopyranose
4
man
branched
161.199
4-epi-vancosamine
4
man
non-polymer
192.124
CITRIC ACID
3
syn
non-polymer
18.015
water
163
nat
water
M86-1410
no
yes
(MLU)(OMZ)N(GHP)(GHP)(OMX)(3FG)
XXNGGYX
A,B,C,D
polypeptide(L)
n
n
n
n
n
n
n
CULTURE HIL Y-86, 36910
sample
100235
UNCULTURED ACTINOMYCETE
DSM 4763
1
2.37
48.11
7.00
1M NA3CIT PH=7.0, PH 7.00
diffrn_source
entity_poly
pdbx_database_proc
pdbx_database_status
pdbx_seq_map_depositor_info
struct_biol
struct_conn
atom_site
atom_site_anisotrop
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_database_status
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_molecule
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_unobs_or_zero_occ_atoms
struct_asym
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
repository
Initial release
Carbohydrate remediation
repository
Remediation
Atomic model
Database references
Derived calculations
Structure summary
Version format compliance
Atomic model
Derived calculations
Non-polymer description
Other
Refinement description
Other
Non-polymer description
Data collection
Derived calculations
Other
Polymer sequence
Advisory
Atomic model
Data collection
Derived calculations
Other
Structure summary
Data collection
Database references
Derived calculations
Refinement description
Structure summary
1
0
2005-07-11
1
1
2011-07-13
1
2
2012-07-25
1
3
2012-11-30
1
4
2013-05-01
2
0
2019-04-24
3
0
2020-07-29
3
1
2023-12-13
_diffrn_source.pdbx_synchrotron_y_n
_entity_poly.pdbx_seq_one_letter_code_can
_pdbx_database_status.recvd_author_approval
_pdbx_seq_map_depositor_info.one_letter_code
_struct_conn.pdbx_leaving_atom_flag
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.occupancy
_atom_site.type_symbol
_atom_site_anisotrop.U[1][1]
_atom_site_anisotrop.U[1][2]
_atom_site_anisotrop.U[1][3]
_atom_site_anisotrop.U[2][2]
_atom_site_anisotrop.U[2][3]
_atom_site_anisotrop.U[3][3]
_atom_site_anisotrop.pdbx_auth_asym_id
_atom_site_anisotrop.pdbx_auth_atom_id
_atom_site_anisotrop.pdbx_auth_comp_id
_atom_site_anisotrop.pdbx_auth_seq_id
_atom_site_anisotrop.pdbx_label_asym_id
_atom_site_anisotrop.pdbx_label_atom_id
_atom_site_anisotrop.pdbx_label_comp_id
_atom_site_anisotrop.type_symbol
_chem_comp.name
_chem_comp.type
_pdbx_database_status.status_code_sf
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
A
BGC
9
n
E
BGC
1
A
RAM
10
n
E
RAM
2
B
BGC
9
n
F
BGC
1
B
RAM
10
n
F
RAM
2
C
BGC
9
n
G
BGC
1
C
RAM
10
n
G
RAM
2
D
BGC
9
n
H
BGC
1
D
RAM
10
n
H
RAM
2
DGlcpb
b-D-glucopyranose
b-D-Glcp
Glc
LRhapa
a-L-rhamnopyranose
a-L-Rhap
Rha
CRYSTAL STRUCTURE OF DECAPLANIN - SPACE GROUP P21
CRYSTAL STRUCTURE OF DECAPLANIN - SPACE GROUP P6122
CRYSTAL STRUCTURE OF DECAPLANIN - SPACE GROUP P6122, SECOND FORM
PDBE
Y
PDBE
2000-12-22
REL
REL
oligosaccharide
LRhapa1-2DGlcpb1-ROH
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/2,2,1/[a2122h-1b_1-5][a2211m-1a_1-5]/1-2/a2-b1
2
PDB2Glycan
1.1.0
WURCS
[][D-1-deoxy-Glcp]{[(2+1)][a-L-Rhap]{}}
2
PDB-CARE
LINUCS
C1
O2
RAM
BGC
2
1
2
O1
HO2
sing
n
n
ERE
4-epi-vancosamine
CIT
CITRIC ACID
HOH
water
DECAPLANIN IS A TRICYCLIC GLYCOPEPTIDE.
HERE, DECAPLSNIN IS REPRESENTED BY GROUPING TOGETGHER THE
SEQUENCE (SEQRES) AND THE THREE LIGANDS (HET) BGC, ERE AND RAM.
GROUP: 1
NAME: DECAPLANIN
CHAIN: A, B, C, D
COMPONENT_1: PEPTIDE LIKE SEQUENCE RESIDUES 1 TO 7
COMPONENT_2: SUGAR RESIDUES 8, 9 AND 10
DESCRIPTION: DECAPLANIN IS A TRICYCLIC GLYCOPEPTIDE.
THE SCAFFOLD IS A HEPTAPEPTIDE WITH THE
CONFIGURATION D-D-L-D-D-L-L, GLYCOSYLATED
BY A MONOSACCHARIDE AND A DISACCHARIDE
1HH3
PDB ENTRY 1HH3
PDB
experimental model
Antibiotic
DECAPLANIN IS A TRICYCLIC GLYCOPEPTIDE.
THE SCAFFOLD IS A HEPTAPEPTIDE WITH THE
CONFIGURATION D-D-L-D-D-L-L, GLYCOSYLATED
Decaplanin
Glycopeptide
ERE
8
3
ERE
ERE
8
A
CIT
1002
4
CIT
CIT
1002
A
ERE
8
3
ERE
ERE
8
B
ERE
8
3
ERE
ERE
8
C
CIT
1003
4
CIT
CIT
1003
C
ERE
8
3
ERE
ERE
8
D
CIT
1001
4
CIT
CIT
1001
D
HOH
2001
5
HOH
HOH
2001
A
HOH
2002
5
HOH
HOH
2002
A
HOH
2003
5
HOH
HOH
2003
A
HOH
2004
5
HOH
HOH
2004
A
HOH
2005
5
HOH
HOH
2005
A
HOH
2006
5
HOH
HOH
2006
A
HOH
2007
5
HOH
HOH
2007
A
HOH
2008
5
HOH
HOH
2008
A
HOH
2009
5
HOH
HOH
2009
A
HOH
2010
5
HOH
HOH
2010
A
HOH
2011
5
HOH
HOH
2011
A
HOH
2012
5
HOH
HOH
2012
A
HOH
2013
5
HOH
HOH
2013
A
HOH
2014
5
HOH
HOH
2014
A
HOH
2015
5
HOH
HOH
2015
A
HOH
2016
5
HOH
HOH
2016
A
HOH
2017
5
HOH
HOH
2017
A
HOH
2018
5
HOH
HOH
2018
A
HOH
2019
5
HOH
HOH
2019
A
HOH
2020
5
HOH
HOH
2020
A
HOH
2021
5
HOH
HOH
2021
A
HOH
2022
5
HOH
HOH
2022
A
HOH
2023
5
HOH
HOH
2023
A
HOH
2024
5
HOH
HOH
2024
A
HOH
2025
5
HOH
HOH
2025
A
HOH
2026
5
HOH
HOH
2026
A
HOH
2027
5
HOH
HOH
2027
A
HOH
2028
5
HOH
HOH
2028
A
HOH
2029
5
HOH
HOH
2029
A
HOH
2030
5
HOH
HOH
2030
A
HOH
2031
5
HOH
HOH
2031
A
HOH
2032
5
HOH
HOH
2032
A
HOH
2033
5
HOH
HOH
2033
A
HOH
2034
5
HOH
HOH
2034
A
HOH
2035
5
HOH
HOH
2035
A
HOH
2036
5
HOH
HOH
2036
A
HOH
2037
5
HOH
HOH
2037
A
HOH
2038
5
HOH
HOH
2038
A
HOH
2039
5
HOH
HOH
2039
A
HOH
2040
5
HOH
HOH
2040
A
HOH
2041
5
HOH
HOH
2041
A
HOH
2001
5
HOH
HOH
2001
B
HOH
2002
5
HOH
HOH
2002
B
HOH
2003
5
HOH
HOH
2003
B
HOH
2004
5
HOH
HOH
2004
B
HOH
2005
5
HOH
HOH
2005
B
HOH
2006
5
HOH
HOH
2006
B
HOH
2007
5
HOH
HOH
2007
B
HOH
2008
5
HOH
HOH
2008
B
HOH
2009
5
HOH
HOH
2009
B
HOH
2010
5
HOH
HOH
2010
B
HOH
2011
5
HOH
HOH
2011
B
HOH
2012
5
HOH
HOH
2012
B
HOH
2013
5
HOH
HOH
2013
B
HOH
2014
5
HOH
HOH
2014
B
HOH
2015
5
HOH
HOH
2015
B
HOH
2016
5
HOH
HOH
2016
B
HOH
2017
5
HOH
HOH
2017
B
HOH
2018
5
HOH
HOH
2018
B
HOH
2019
5
HOH
HOH
2019
B
HOH
2020
5
HOH
HOH
2020
B
HOH
2021
5
HOH
HOH
2021
B
HOH
2022
5
HOH
HOH
2022
B
HOH
2023
5
HOH
HOH
2023
B
HOH
2024
5
HOH
HOH
2024
B
HOH
2025
5
HOH
HOH
2025
B
HOH
2026
5
HOH
HOH
2026
B
HOH
2027
5
HOH
HOH
2027
B
HOH
2028
5
HOH
HOH
2028
B
HOH
2029
5
HOH
HOH
2029
B
HOH
2030
5
HOH
HOH
2030
B
HOH
2031
5
HOH
HOH
2031
B
HOH
2032
5
HOH
HOH
2032
B
HOH
2033
5
HOH
HOH
2033
B
HOH
2034
5
HOH
HOH
2034
B
HOH
2035
5
HOH
HOH
2035
B
HOH
2036
5
HOH
HOH
2036
B
HOH
2037
5
HOH
HOH
2037
B
HOH
2038
5
HOH
HOH
2038
B
HOH
2039
5
HOH
HOH
2039
B
HOH
2040
5
HOH
HOH
2040
B
HOH
2041
5
HOH
HOH
2041
B
HOH
2042
5
HOH
HOH
2042
B
HOH
2001
5
HOH
HOH
2001
C
HOH
2002
5
HOH
HOH
2002
C
HOH
2003
5
HOH
HOH
2003
C
HOH
2004
5
HOH
HOH
2004
C
HOH
2005
5
HOH
HOH
2005
C
HOH
2006
5
HOH
HOH
2006
C
HOH
2007
5
HOH
HOH
2007
C
HOH
2008
5
HOH
HOH
2008
C
HOH
2009
5
HOH
HOH
2009
C
HOH
2010
5
HOH
HOH
2010
C
HOH
2011
5
HOH
HOH
2011
C
HOH
2012
5
HOH
HOH
2012
C
HOH
2013
5
HOH
HOH
2013
C
HOH
2014
5
HOH
HOH
2014
C
HOH
2015
5
HOH
HOH
2015
C
HOH
2016
5
HOH
HOH
2016
C
HOH
2017
5
HOH
HOH
2017
C
HOH
2018
5
HOH
HOH
2018
C
HOH
2019
5
HOH
HOH
2019
C
HOH
2020
5
HOH
HOH
2020
C
HOH
2021
5
HOH
HOH
2021
C
HOH
2022
5
HOH
HOH
2022
C
HOH
2023
5
HOH
HOH
2023
C
HOH
2024
5
HOH
HOH
2024
C
HOH
2025
5
HOH
HOH
2025
C
HOH
2026
5
HOH
HOH
2026
C
HOH
2027
5
HOH
HOH
2027
C
HOH
2028
5
HOH
HOH
2028
C
HOH
2029
5
HOH
HOH
2029
C
HOH
2030
5
HOH
HOH
2030
C
HOH
2031
5
HOH
HOH
2031
C
HOH
2032
5
HOH
HOH
2032
C
HOH
2033
5
HOH
HOH
2033
C
HOH
2034
5
HOH
HOH
2034
C
HOH
2035
5
HOH
HOH
2035
C
HOH
2036
5
HOH
HOH
2036
C
HOH
2037
5
HOH
HOH
2037
C
HOH
2038
5
HOH
HOH
2038
C
HOH
2001
5
HOH
HOH
2001
D
HOH
2002
5
HOH
HOH
2002
D
HOH
2003
5
HOH
HOH
2003
D
HOH
2004
5
HOH
HOH
2004
D
HOH
2005
5
HOH
HOH
2005
D
HOH
2006
5
HOH
HOH
2006
D
HOH
2007
5
HOH
HOH
2007
D
HOH
2008
5
HOH
HOH
2008
D
HOH
2009
5
HOH
HOH
2009
D
HOH
2010
5
HOH
HOH
2010
D
HOH
2011
5
HOH
HOH
2011
D
HOH
2012
5
HOH
HOH
2012
D
HOH
2013
5
HOH
HOH
2013
D
HOH
2014
5
HOH
HOH
2014
D
HOH
2015
5
HOH
HOH
2015
D
HOH
2016
5
HOH
HOH
2016
D
HOH
2017
5
HOH
HOH
2017
D
HOH
2018
5
HOH
HOH
2018
D
HOH
2019
5
HOH
HOH
2019
D
HOH
2020
5
HOH
HOH
2020
D
HOH
2021
5
HOH
HOH
2021
D
HOH
2022
5
HOH
HOH
2022
D
HOH
2023
5
HOH
HOH
2023
D
HOH
2024
5
HOH
HOH
2024
D
HOH
2025
5
HOH
HOH
2025
D
HOH
2026
5
HOH
HOH
2026
D
HOH
2027
5
HOH
HOH
2027
D
HOH
2028
5
HOH
HOH
2028
D
HOH
2029
5
HOH
HOH
2029
D
HOH
2030
5
HOH
HOH
2030
D
HOH
2031
5
HOH
HOH
2031
D
HOH
2032
5
HOH
HOH
2032
D
HOH
2033
5
HOH
HOH
2033
D
HOH
2034
5
HOH
HOH
2034
D
HOH
2035
5
HOH
HOH
2035
D
HOH
2036
5
HOH
HOH
2036
D
HOH
2037
5
HOH
HOH
2037
D
HOH
2038
5
HOH
HOH
2038
D
HOH
2039
5
HOH
HOH
2039
D
HOH
2040
5
HOH
HOH
2040
D
HOH
2041
5
HOH
HOH
2041
D
HOH
2042
5
HOH
HOH
2042
D
MLU
1
n
1
MLU
1
A
OMZ
2
n
2
OMZ
2
A
ASN
3
n
3
ASN
3
A
GHP
4
n
4
GHP
4
A
GHP
5
n
5
GHP
5
A
OMX
6
n
6
OMX
6
A
3FG
7
n
7
3FG
7
A
MLU
1
n
1
MLU
1
B
OMZ
2
n
2
OMZ
2
B
ASN
3
n
3
ASN
3
B
GHP
4
n
4
GHP
4
B
GHP
5
n
5
GHP
5
B
OMX
6
n
6
OMX
6
B
3FG
7
n
7
3FG
7
B
MLU
1
n
1
MLU
1
C
OMZ
2
n
2
OMZ
2
C
ASN
3
n
3
ASN
3
C
GHP
4
n
4
GHP
4
C
GHP
5
n
5
GHP
5
C
OMX
6
n
6
OMX
6
C
3FG
7
n
7
3FG
7
C
MLU
1
n
1
MLU
1
D
OMZ
2
n
2
OMZ
2
D
ASN
3
n
3
ASN
3
D
GHP
4
n
4
GHP
4
D
GHP
5
n
5
GHP
5
D
OMX
6
n
6
OMX
6
D
3FG
7
n
7
3FG
7
D
0.1849
0.2242
0.1828
0.2221
0.2255
0.2642
1425
1901
4.9
4.9
29332
author_and_software_defined_assembly
PISA
2
dimeric
author_and_software_defined_assembly
PISA
2
dimeric
A
OMX
6
(BETAR)-BETA-HYDROXY-L-TYROSINE
A
OMX
6
TYR
B
OMX
6
(BETAR)-BETA-HYDROXY-L-TYROSINE
B
OMX
6
TYR
C
OMX
6
(BETAR)-BETA-HYDROXY-L-TYROSINE
C
OMX
6
TYR
D
OMX
6
(BETAR)-BETA-HYDROXY-L-TYROSINE
D
OMX
6
TYR
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
B
CG
MLU
1
B
CG
MLU
1
1
Y
1
B
CD1
MLU
1
B
CD1
MLU
1
1
Y
1
B
CD2
MLU
1
B
CD2
MLU
1
1
Y
1
C
C2
CIT
1003
M
C2
CIT
1
1
N
1
C
C3
CIT
1003
M
C3
CIT
1
1
N
1
C
O7
CIT
1003
M
O7
CIT
1
1
N
1
C
C4
CIT
1003
M
C4
CIT
1
1
N
1
C
C5
CIT
1003
M
C5
CIT
1
1
N
1
C
O3
CIT
1003
M
O3
CIT
1
1
N
1
C
O4
CIT
1003
M
O4
CIT
1
1
N
1
C
C6
CIT
1003
M
C6
CIT
1
1
N
1
C
O5
CIT
1003
M
O5
CIT
1
1
N
1
C
O6
CIT
1003
M
O6
CIT
1
1
N
1
-12.30
1.60
122.70
110.40
B
B
B
O
C
N
OMZ
OMZ
ASN
2
2
3
Y
1
C
ASN
3
-95.79
-61.12
0.2642
0.2242
0.2221
1.13
18.08
5685
1901
38893
1007
4.9
96.8
SHELLS
1
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1HH3
ENGH AND HUBER
MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228
0
623.50
1.13
18.08
163
629
153
0
313
0.042
0.041
0.076
0.096
0.146
0.014
0.011
0.084
1.130
18.080
1HHC
20450
0.09810
1
12.3400
7.140
96.8
0.30200
1.13
1.25
4.670
1
4.70
88.2
refinement
SHELXL-97
data reduction
SAINT
data scaling
SADABS
phasing
EPMR
Crystal structure of Decaplanin - space group P21, second form
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
4
N
N
3
N
N
3
N
N
4
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
5
N
N
covale
1.336
both
A
MLU
1
A
C
MLU
1
1_555
A
OMZ
2
A
N
OMZ
2
1_555
covale
1.340
both
A
OMZ
2
A
C
OMZ
2
1_555
A
ASN
3
A
N
ASN
3
1_555
covale
1.387
none
A
OMZ
2
A
OH
OMZ
2
1_555
A
GHP
4
A
C5
GHP
4
1_555
covale
1.369
both
A
ASN
3
A
C
ASN
3
1_555
A
GHP
4
A
N
GHP
4
1_555
covale
1.333
both
A
GHP
4
A
C
GHP
4
1_555
A
GHP
5
A
N
GHP
5
1_555
covale
1.420
none
A
GHP
4
A
C3
GHP
4
1_555
A
OMX
6
A
OH
OMX
6
1_555
covale
1.443
one
A
GHP
4
A
O4
GHP
4
1_555
E
BGC
1
E
C1
BGC
1_555
covale
1.323
both
A
GHP
5
A
C
GHP
5
1_555
A
OMX
6
A
N
OMX
6
1_555
covale
1.486
one
A
GHP
5
A
C3
GHP
5
1_555
A
3FG
7
A
CG1
3FG
7
1_555
covale
1.355
both
A
OMX
6
A
C
OMX
6
1_555
A
3FG
7
A
N
3FG
7
1_555
covale
1.420
one
A
OMX
6
A
OC
OMX
6
1_555
A
ERE
8
I
C1
ERE
1_555
covale
1.355
both
B
MLU
1
B
C
MLU
1
1_555
B
OMZ
2
B
N
OMZ
2
1_555
covale
1.281
both
B
OMZ
2
B
C
OMZ
2
1_555
B
ASN
3
B
N
ASN
3
1_555
covale
1.393
none
B
OMZ
2
B
OH
OMZ
2
1_555
B
GHP
4
B
C5
GHP
4
1_555
covale
1.330
both
B
ASN
3
B
C
ASN
3
1_555
B
GHP
4
B
N
GHP
4
1_555
covale
1.358
both
B
GHP
4
B
C
GHP
4
1_555
B
GHP
5
B
N
GHP
5
1_555
covale
1.376
none
B
GHP
4
B
C3
GHP
4
1_555
B
OMX
6
B
OH
OMX
6
1_555
covale
1.410
one
B
GHP
4
B
O4
GHP
4
1_555
F
BGC
1
F
C1
BGC
1_555
covale
1.332
both
B
GHP
5
B
C
GHP
5
1_555
B
OMX
6
B
N
OMX
6
1_555
covale
1.480
one
B
GHP
5
B
C3
GHP
5
1_555
B
3FG
7
B
CG1
3FG
7
1_555
covale
1.362
both
B
OMX
6
B
C
OMX
6
1_555
B
3FG
7
B
N
3FG
7
1_555
covale
1.417
one
B
OMX
6
B
OC
OMX
6
1_555
B
ERE
8
K
C1
ERE
1_555
covale
1.345
both
C
MLU
1
C
C
MLU
1
1_555
C
OMZ
2
C
N
OMZ
2
1_555
covale
1.344
both
C
OMZ
2
C
C
OMZ
2
1_555
C
ASN
3
C
N
ASN
3
1_555
covale
1.391
none
C
OMZ
2
C
OH
OMZ
2
1_555
C
GHP
4
C
C5
GHP
4
1_555
covale
1.326
both
C
ASN
3
C
C
ASN
3
1_555
C
GHP
4
C
N
GHP
4
1_555
covale
1.362
both
C
GHP
4
C
C
GHP
4
1_555
C
GHP
5
C
N
GHP
5
1_555
covale
1.392
none
C
GHP
4
C
C3
GHP
4
1_555
C
OMX
6
C
OH
OMX
6
1_555
covale
1.437
one
C
GHP
4
C
O4
GHP
4
1_555
G
BGC
1
G
C1
BGC
1_555
covale
1.312
both
C
GHP
5
C
C
GHP
5
1_555
C
OMX
6
C
N
OMX
6
1_555
covale
1.501
one
C
GHP
5
C
C3
GHP
5
1_555
C
3FG
7
C
CG1
3FG
7
1_555
covale
1.363
both
C
OMX
6
C
C
OMX
6
1_555
C
3FG
7
C
N
3FG
7
1_555
covale
1.397
one
C
OMX
6
C
OC
OMX
6
1_555
C
ERE
8
L
C1
ERE
1_555
covale
1.334
both
D
MLU
1
D
C
MLU
1
1_555
D
OMZ
2
D
N
OMZ
2
1_555
covale
1.334
both
D
OMZ
2
D
C
OMZ
2
1_555
D
ASN
3
D
N
ASN
3
1_555
covale
1.391
none
D
OMZ
2
D
OH
OMZ
2
1_555
D
GHP
4
D
C5
GHP
4
1_555
covale
1.346
both
D
ASN
3
D
C
ASN
3
1_555
D
GHP
4
D
N
GHP
4
1_555
covale
1.328
both
D
GHP
4
D
C
GHP
4
1_555
D
GHP
5
D
N
GHP
5
1_555
covale
1.397
none
D
GHP
4
D
C3
GHP
4
1_555
D
OMX
6
D
OH
OMX
6
1_555
covale
1.395
one
D
GHP
4
D
O4
GHP
4
1_555
H
BGC
1
H
C1
BGC
1_555
covale
1.325
both
D
GHP
5
D
C
GHP
5
1_555
D
OMX
6
D
N
OMX
6
1_555
covale
1.504
one
D
GHP
5
D
C3
GHP
5
1_555
D
3FG
7
D
CG1
3FG
7
1_555
covale
1.352
both
D
OMX
6
D
C
OMX
6
1_555
D
3FG
7
D
N
3FG
7
1_555
covale
1.410
one
D
OMX
6
D
OC
OMX
6
1_555
D
ERE
8
N
C1
ERE
1_555
covale
1.423
both
E
BGC
1
E
O2
BGC
1_555
E
RAM
2
E
C1
RAM
1_555
covale
1.412
both
F
BGC
1
F
O2
BGC
1_555
F
RAM
2
F
C1
RAM
1_555
covale
1.412
both
G
BGC
1
G
O2
BGC
1_555
G
RAM
2
G
C1
RAM
1_555
covale
1.405
both
H
BGC
1
H
O2
BGC
1_555
H
RAM
2
H
C1
RAM
1_555
ANTIBIOTIC
ANTIBIOTIC, GLYCOPEPTIDE
A
GHP
5
A
GHP
5
1
A
OMX
6
A
OMX
6
6.02
B
GHP
5
B
GHP
5
1
B
OMX
6
B
OMX
6
10.01
C
GHP
5
C
GHP
5
1
C
OMX
6
C
OMX
6
7.39
D
GHP
5
D
GHP
5
1
D
OMX
6
D
OMX
6
8.34
given
-0.966650
-0.178880
-0.183300
-0.140040
-0.230070
0.963050
-0.214440
0.956590
0.197350
0.07411
-26.26217
20.64583
given
0.761130
0.004130
0.648580
-0.035650
-0.998200
0.048190
0.647610
-0.059800
-0.759620
-14.32841
12.11362
40.40091
given
-0.851290
0.246660
-0.463110
0.502150
0.127030
-0.855400
-0.152170
-0.960740
-0.232000
3.44473
12.69141
43.50352
NOR00692
NOR
1
NOR00692
1
7
1HHC
1
7
NOR00692
A
1
1
7
1
7
1HHC
1
7
NOR00692
B
1
1
7
1
7
1HHC
1
7
NOR00692
C
1
1
7
1
7
1HHC
1
7
NOR00692
D
1
1
7
4
P 1 21 1