0.013860 0.008002 0.000000 0.000000 0.016004 0.000000 0.000000 0.000000 0.009346 0.00000 0.00000 0.00000 Schneider, B. Babolat, M. Xu, Y.W. Janin, J. Veron, M. Deville-Bonne, D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 72.150 72.150 107.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N C N 199 N N N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N S N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N N N 237 S C N 238 N C N 239 N O N 240 N C Y 241 N C Y 242 N C Y 243 N C Y 244 N C Y 245 N C Y 246 N C N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N N N 260 S C N 261 N C N 262 N O N 263 N C N 264 N C N 265 N C N 266 N O N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N N N 277 S C N 278 N C N 279 N O N 280 N C N 281 N O N 282 N O N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N S N 291 N O N 292 N O N 293 N O N 294 N O N 295 N N N 296 S C N 297 N C N 298 N O N 299 R C N 300 N O N 301 N C N 302 N O N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N N N 313 S C N 314 N C N 315 N O N 316 N C Y 317 N C Y 318 N C Y 319 N C Y 320 N N Y 321 N C Y 322 N C Y 323 N C Y 324 N C Y 325 N C N 326 N O N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N N N 340 S C N 341 N C N 342 N O N 343 N C Y 344 N C Y 345 N C Y 346 N C Y 347 N C Y 348 N C Y 349 N C N 350 N O N 351 N O N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N N N 364 S C N 365 N C N 366 N O N 367 N C N 368 N C N 369 N C N 370 N O N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing Y 235 N doub Y 236 N sing Y 237 N sing N 238 N sing Y 239 N doub N 240 N sing Y 241 N doub N 242 N sing Y 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N doub N 278 N doub N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N doub N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N doub N 304 N sing N 305 N sing N 306 N sing N 307 N sing Y 308 N doub Y 309 N sing Y 310 N sing N 311 N sing Y 312 N doub Y 313 N sing Y 314 N sing N 315 N sing Y 316 N sing Y 317 N doub N 318 N sing Y 319 N doub N 320 N sing Y 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N doub N 332 N sing N 333 N sing N 334 N sing N 335 N sing Y 336 N doub Y 337 N sing Y 338 N sing N 339 N sing Y 340 N doub N 341 N sing Y 342 N doub N 343 N sing Y 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N doub N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing IX Eur.J.Biochem. EJBCAI 0262 0014-2956 268 1964 10.1046/J.1432-1327.2001.02070.X 11277918 Mechanism of Phosphoryl Transfer by Nucleoside Diphosphate Kinase Ph-Dependence and Role of Active Site Lys16 and Tyr56 Residues 2001 10.2210/pdb1hhq/pdb pdb_00001hhq 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 277.0 1 IMAGE PLATE SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU AMMOUNIUM SULFATE 16758.234 NUCLEOSIDE DIPHOSPHATE KINASE 2.7.4.6 YES 1 man polymer 96.063 SULFATE ION 1 syn non-polymer 18.015 water 134 nat water no no MSTNKVNKERTFLAVAPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAM VFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVESANREIALWFKPEELLTEVKPNPNLYE MSTNKVNKERTFLAVAPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAM VFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVESANREIALWFKPEELLTEVKPNPNLYE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 44689 DICTYOSTELIUM DISCOIDEUM 562 ESCHERICHIA COLI 1 2.40 41 VAPOR DIFFUSION, HANGING DROP 7.50 METHOD: HANGING DROP IN DROP: 5MG/ML PROTEIN, 50 MM TRIS HCL PH7.5, 1 M AS, 20MM MGCL2 IN WELL: 2M AS, 50MM TRISHCL PH7.5, 20MM MGCL2, pH 7.50 database_PDB_rev database_PDB_rev_record exptl_crystal_grow pdbx_database_proc pdbx_database_status chem_comp_atom chem_comp_bond database_2 pdbx_database_status pdbx_initial_refinement_model struct_site repository Initial release Version format compliance Version format compliance Data collection Experimental preparation Other Data collection Database references Derived calculations Other Refinement description 1 0 2001-05-31 1 1 2011-05-08 1 2 2011-07-13 1 3 2019-05-08 1 4 2023-12-13 _exptl_crystal_grow.method _pdbx_database_status.recvd_author_approval _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_sf _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id NUCLEOSIDE DIPHOSPHATE KINASE STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE H122G MUTANT 3'-FLUORO-URIDINE DIPHOSPHATE BINDING TO NUCLEOSIDE DIPHOSPHATE KINASE 3'-PHOSPHORYLATED NUCLEOTIDES BINDING TO NUCLEOSIDE DIPHOSPHATE KINASE STRUCTURE OF THE H122G NUCLEOSIDE DIPHOSPHATE KINASE / D4T- TRIPHOSPHATE.MG COMPLEX STRUCTURE OF THE NUCLEOSIDE DIPHOSPHATE KINASE/ALPHA-BORANO(RP)-TDP.MG COMPLEX STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE P100S NUCLEOSIDE DIPHOSPHATE KINASE AZT DIPHOSPHATE BINDING TO NUCLEOSIDE DIPHOSPHATE KINASE THERMAL STABILITY OF HEXAMERIC AND TETRAMERIC NUCLEOSIDE, DIPHOSPHATE KINASES CRYSTAL STRUCTURE OF NDP KINASE COMPLEXED WITH MG, ADP, AND BEF3 BINDING OF NUCLEOTIDES TO NDP KINASE PDBE Y PDBE 2000-12-26 REL REL SO4 SULFATE ION HOH water CHAIN A ENGINEERED MUTATION LYS16ALA PLAYS A MAJOR ROLE IN THE SYNTHESIS OF NUCLEOSIDE TRIPHOSPHATES OTHER THAN ATP. 1NPK PDB experimental model SO4 160 2 SO4 SO4 160 A HOH 2001 3 HOH HOH 2001 A HOH 2002 3 HOH HOH 2002 A HOH 2003 3 HOH HOH 2003 A HOH 2004 3 HOH HOH 2004 A HOH 2005 3 HOH HOH 2005 A HOH 2006 3 HOH HOH 2006 A HOH 2007 3 HOH HOH 2007 A HOH 2008 3 HOH HOH 2008 A HOH 2009 3 HOH HOH 2009 A HOH 2010 3 HOH HOH 2010 A HOH 2011 3 HOH HOH 2011 A HOH 2012 3 HOH HOH 2012 A HOH 2013 3 HOH HOH 2013 A HOH 2014 3 HOH HOH 2014 A HOH 2015 3 HOH HOH 2015 A HOH 2016 3 HOH HOH 2016 A HOH 2017 3 HOH HOH 2017 A HOH 2018 3 HOH HOH 2018 A HOH 2019 3 HOH HOH 2019 A HOH 2020 3 HOH HOH 2020 A HOH 2021 3 HOH HOH 2021 A HOH 2022 3 HOH HOH 2022 A HOH 2023 3 HOH HOH 2023 A HOH 2024 3 HOH HOH 2024 A HOH 2025 3 HOH HOH 2025 A HOH 2026 3 HOH HOH 2026 A HOH 2027 3 HOH HOH 2027 A HOH 2028 3 HOH HOH 2028 A HOH 2029 3 HOH HOH 2029 A HOH 2030 3 HOH HOH 2030 A HOH 2031 3 HOH HOH 2031 A HOH 2032 3 HOH HOH 2032 A HOH 2033 3 HOH HOH 2033 A HOH 2034 3 HOH HOH 2034 A HOH 2035 3 HOH HOH 2035 A HOH 2036 3 HOH HOH 2036 A HOH 2037 3 HOH HOH 2037 A HOH 2038 3 HOH HOH 2038 A HOH 2039 3 HOH HOH 2039 A HOH 2040 3 HOH HOH 2040 A HOH 2041 3 HOH HOH 2041 A HOH 2042 3 HOH HOH 2042 A HOH 2043 3 HOH HOH 2043 A HOH 2044 3 HOH HOH 2044 A HOH 2045 3 HOH HOH 2045 A HOH 2046 3 HOH HOH 2046 A HOH 2047 3 HOH HOH 2047 A HOH 2048 3 HOH HOH 2048 A HOH 2049 3 HOH HOH 2049 A HOH 2050 3 HOH HOH 2050 A HOH 2051 3 HOH HOH 2051 A HOH 2052 3 HOH HOH 2052 A HOH 2053 3 HOH HOH 2053 A HOH 2054 3 HOH HOH 2054 A HOH 2055 3 HOH HOH 2055 A HOH 2056 3 HOH HOH 2056 A HOH 2057 3 HOH HOH 2057 A HOH 2058 3 HOH HOH 2058 A HOH 2059 3 HOH HOH 2059 A HOH 2060 3 HOH HOH 2060 A HOH 2061 3 HOH HOH 2061 A HOH 2062 3 HOH HOH 2062 A HOH 2063 3 HOH HOH 2063 A HOH 2064 3 HOH HOH 2064 A HOH 2065 3 HOH HOH 2065 A HOH 2066 3 HOH HOH 2066 A HOH 2067 3 HOH HOH 2067 A HOH 2068 3 HOH HOH 2068 A HOH 2069 3 HOH HOH 2069 A HOH 2070 3 HOH HOH 2070 A HOH 2071 3 HOH HOH 2071 A HOH 2072 3 HOH HOH 2072 A HOH 2073 3 HOH HOH 2073 A HOH 2074 3 HOH HOH 2074 A HOH 2075 3 HOH HOH 2075 A HOH 2076 3 HOH HOH 2076 A HOH 2077 3 HOH HOH 2077 A HOH 2078 3 HOH HOH 2078 A HOH 2079 3 HOH HOH 2079 A HOH 2080 3 HOH HOH 2080 A HOH 2081 3 HOH HOH 2081 A HOH 2082 3 HOH HOH 2082 A HOH 2083 3 HOH HOH 2083 A HOH 2084 3 HOH HOH 2084 A HOH 2085 3 HOH HOH 2085 A HOH 2086 3 HOH HOH 2086 A HOH 2087 3 HOH HOH 2087 A HOH 2088 3 HOH HOH 2088 A HOH 2089 3 HOH HOH 2089 A HOH 2090 3 HOH HOH 2090 A HOH 2091 3 HOH HOH 2091 A HOH 2092 3 HOH HOH 2092 A HOH 2093 3 HOH HOH 2093 A HOH 2094 3 HOH HOH 2094 A HOH 2095 3 HOH HOH 2095 A HOH 2096 3 HOH HOH 2096 A HOH 2097 3 HOH HOH 2097 A HOH 2098 3 HOH HOH 2098 A HOH 2099 3 HOH HOH 2099 A HOH 2100 3 HOH HOH 2100 A HOH 2101 3 HOH HOH 2101 A HOH 2102 3 HOH HOH 2102 A HOH 2103 3 HOH HOH 2103 A HOH 2104 3 HOH HOH 2104 A HOH 2105 3 HOH HOH 2105 A HOH 2106 3 HOH HOH 2106 A HOH 2107 3 HOH HOH 2107 A HOH 2108 3 HOH HOH 2108 A HOH 2109 3 HOH HOH 2109 A HOH 2110 3 HOH HOH 2110 A HOH 2111 3 HOH HOH 2111 A HOH 2112 3 HOH HOH 2112 A HOH 2113 3 HOH HOH 2113 A HOH 2114 3 HOH HOH 2114 A HOH 2115 3 HOH HOH 2115 A HOH 2116 3 HOH HOH 2116 A HOH 2117 3 HOH HOH 2117 A HOH 2118 3 HOH HOH 2118 A HOH 2119 3 HOH HOH 2119 A HOH 2120 3 HOH HOH 2120 A HOH 2121 3 HOH HOH 2121 A HOH 2122 3 HOH HOH 2122 A HOH 2123 3 HOH HOH 2123 A HOH 2124 3 HOH HOH 2124 A HOH 2125 3 HOH HOH 2125 A HOH 2126 3 HOH HOH 2126 A HOH 2127 3 HOH HOH 2127 A HOH 2128 3 HOH HOH 2128 A HOH 2129 3 HOH HOH 2129 A HOH 2130 3 HOH HOH 2130 A HOH 2131 3 HOH HOH 2131 A HOH 2132 3 HOH HOH 2132 A HOH 2133 3 HOH HOH 2133 A HOH 2134 3 HOH HOH 2134 A n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A VAL 6 n 6 VAL 6 A ASN 7 n 7 ASN 7 A LYS 8 n 8 LYS 8 A GLU 9 n 9 GLU 9 A ARG 10 n 10 ARG 10 A THR 11 n 11 THR 11 A PHE 12 n 12 PHE 12 A LEU 13 n 13 LEU 13 A ALA 14 n 14 ALA 14 A VAL 15 n 15 VAL 15 A ALA 16 n 16 ALA 16 A PRO 17 n 17 PRO 17 A ASP 18 n 18 ASP 18 A GLY 19 n 19 GLY 19 A VAL 20 n 20 VAL 20 A ALA 21 n 21 ALA 21 A ARG 22 n 22 ARG 22 A GLY 23 n 23 GLY 23 A LEU 24 n 24 LEU 24 A VAL 25 n 25 VAL 25 A GLY 26 n 26 GLY 26 A GLU 27 n 27 GLU 27 A ILE 28 n 28 ILE 28 A ILE 29 n 29 ILE 29 A ALA 30 n 30 ALA 30 A ARG 31 n 31 ARG 31 A TYR 32 n 32 TYR 32 A GLU 33 n 33 GLU 33 A LYS 34 n 34 LYS 34 A LYS 35 n 35 LYS 35 A GLY 36 n 36 GLY 36 A PHE 37 n 37 PHE 37 A VAL 38 n 38 VAL 38 A LEU 39 n 39 LEU 39 A VAL 40 n 40 VAL 40 A GLY 41 n 41 GLY 41 A LEU 42 n 42 LEU 42 A LYS 43 n 43 LYS 43 A GLN 44 n 44 GLN 44 A LEU 45 n 45 LEU 45 A VAL 46 n 46 VAL 46 A PRO 47 n 47 PRO 47 A THR 48 n 48 THR 48 A LYS 49 n 49 LYS 49 A ASP 50 n 50 ASP 50 A LEU 51 n 51 LEU 51 A ALA 52 n 52 ALA 52 A GLU 53 n 53 GLU 53 A SER 54 n 54 SER 54 A HIS 55 n 55 HIS 55 A TYR 56 n 56 TYR 56 A ALA 57 n 57 ALA 57 A GLU 58 n 58 GLU 58 A HIS 59 n 59 HIS 59 A LYS 60 n 60 LYS 60 A GLU 61 n 61 GLU 61 A ARG 62 n 62 ARG 62 A PRO 63 n 63 PRO 63 A PHE 64 n 64 PHE 64 A PHE 65 n 65 PHE 65 A GLY 66 n 66 GLY 66 A GLY 67 n 67 GLY 67 A LEU 68 n 68 LEU 68 A VAL 69 n 69 VAL 69 A SER 70 n 70 SER 70 A PHE 71 n 71 PHE 71 A ILE 72 n 72 ILE 72 A THR 73 n 73 THR 73 A SER 74 n 74 SER 74 A GLY 75 n 75 GLY 75 A PRO 76 n 76 PRO 76 A VAL 77 n 77 VAL 77 A VAL 78 n 78 VAL 78 A ALA 79 n 79 ALA 79 A MET 80 n 80 MET 80 A VAL 81 n 81 VAL 81 A PHE 82 n 82 PHE 82 A GLU 83 n 83 GLU 83 A GLY 84 n 84 GLY 84 A LYS 85 n 85 LYS 85 A GLY 86 n 86 GLY 86 A VAL 87 n 87 VAL 87 A VAL 88 n 88 VAL 88 A ALA 89 n 89 ALA 89 A SER 90 n 90 SER 90 A ALA 91 n 91 ALA 91 A ARG 92 n 92 ARG 92 A LEU 93 n 93 LEU 93 A MET 94 n 94 MET 94 A ILE 95 n 95 ILE 95 A GLY 96 n 96 GLY 96 A VAL 97 n 97 VAL 97 A THR 98 n 98 THR 98 A ASN 99 n 99 ASN 99 A PRO 100 n 100 PRO 100 A LEU 101 n 101 LEU 101 A ALA 102 n 102 ALA 102 A SER 103 n 103 SER 103 A ALA 104 n 104 ALA 104 A PRO 105 n 105 PRO 105 A GLY 106 n 106 GLY 106 A SER 107 n 107 SER 107 A ILE 108 n 108 ILE 108 A ARG 109 n 109 ARG 109 A GLY 110 n 110 GLY 110 A ASP 111 n 111 ASP 111 A PHE 112 n 112 PHE 112 A GLY 113 n 113 GLY 113 A VAL 114 n 114 VAL 114 A ASP 115 n 115 ASP 115 A VAL 116 n 116 VAL 116 A GLY 117 n 117 GLY 117 A ARG 118 n 118 ARG 118 A ASN 119 n 119 ASN 119 A ILE 120 n 120 ILE 120 A ILE 121 n 121 ILE 121 A HIS 122 n 122 HIS 122 A GLY 123 n 123 GLY 123 A SER 124 n 124 SER 124 A ASP 125 n 125 ASP 125 A SER 126 n 126 SER 126 A VAL 127 n 127 VAL 127 A GLU 128 n 128 GLU 128 A SER 129 n 129 SER 129 A ALA 130 n 130 ALA 130 A ASN 131 n 131 ASN 131 A ARG 132 n 132 ARG 132 A GLU 133 n 133 GLU 133 A ILE 134 n 134 ILE 134 A ALA 135 n 135 ALA 135 A LEU 136 n 136 LEU 136 A TRP 137 n 137 TRP 137 A PHE 138 n 138 PHE 138 A LYS 139 n 139 LYS 139 A PRO 140 n 140 PRO 140 A GLU 141 n 141 GLU 141 A GLU 142 n 142 GLU 142 A LEU 143 n 143 LEU 143 A LEU 144 n 144 LEU 144 A THR 145 n 145 THR 145 A GLU 146 n 146 GLU 146 A VAL 147 n 147 VAL 147 A LYS 148 n 148 LYS 148 A PRO 149 n 149 PRO 149 A ASN 150 n 150 ASN 150 A PRO 151 n 151 PRO 151 A ASN 152 n 152 ASN 152 A LEU 153 n 153 LEU 153 A TYR 154 n 154 TYR 154 A GLU 155 n 155 GLU 155 A author_and_software_defined_assembly PQS 6 hexameric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_455 -x+y-1,-x,z crystal symmetry operation -72.1500000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_565 -y,x-y+1,z crystal symmetry operation -36.0750000000 62.4837328830 0.0000000000 0.5000000000 0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 12_564 x,x-y+1,-z-1/2 crystal symmetry operation -36.0750000000 62.4837328830 -53.5000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 11_454 -x+y-1,y,-z-1/2 crystal symmetry operation -72.1500000000 0.0000000000 -53.5000000000 0.5000000000 -0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 10_554 -y,-x,-z-1/2 crystal symmetry operation 0.0000000000 0.0000000000 -53.5000000000 A N LEU 45 A N LEU 45 A O VAL 77 A O VAL 77 A N PHE 82 A N PHE 82 A O THR 11 A O THR 11 A N ALA 14 A N ALA 14 A O HIS 122 A O HIS 122 1 A MET 1 A MET 1 1 Y 1 A SER 2 A SER 2 1 Y 1 A THR 3 A THR 3 1 Y 1 A ASN 4 A ASN 4 1 Y 1 A LYS 5 A LYS 5 1 Y 1 A LYS 43 -175.16 147.36 1 A ILE 120 59.82 -54.64 18.7 0.255 0.177 0.177 2.1 20 1092 10966 10.0 99 RANDOM 1 2 MOLECULAR REPLACEMENT 1NPK 2.1 20 134 1282 5 0 1143 0.006 1.2 25 0.65 18.0 2.100 20.000 1HHQ 11016 2.000 0.05000 1 10.1000 4.300 99.7 refinement X-PLOR 3.8 data reduction MOSFLM data scaling CCP4 phasing AMoRE Role of active site resiude Lys16 in Nucleoside Diphosphate Kinase 1 N N 2 N N 3 N N A ALA 16 A ALA 16 HELX_P A ARG 22 A ARG 22 1 1 7 A LEU 24 A LEU 24 HELX_P A GLY 36 A GLY 36 1 2 13 A THR 48 A THR 48 HELX_P A TYR 56 A TYR 56 1 3 9 A ALA 57 A ALA 57 HELX_P A LYS 60 A LYS 60 5 4 4 A PHE 64 A PHE 64 HELX_P A THR 73 A THR 73 1 5 10 A GLY 86 A GLY 86 HELX_P A GLY 96 A GLY 96 1 6 11 A ASN 99 A ASN 99 HELX_P A SER 103 A SER 103 5 7 5 A SER 107 A SER 107 HELX_P A GLY 113 A GLY 113 1 8 7 A SER 126 A SER 126 HELX_P A PHE 138 A PHE 138 1 9 13 A LYS 139 A LYS 139 HELX_P A LEU 143 A LEU 143 5 10 5 TRANSFERASE METABOLIC ROLE, TRANSFERASE, KINASE NDKC_DICDI UNP 1 P22887 1 155 1HHQ 1 155 P22887 A 1 1 155 1 LYS engineered mutation ALA 16 1HHQ A P22887 UNP 16 16 4 anti-parallel anti-parallel anti-parallel A VAL 38 A VAL 38 A LEU 45 A LEU 45 A VAL 77 A VAL 77 A GLU 83 A GLU 83 A ARG 10 A ARG 10 A VAL 15 A VAL 15 A ILE 121 A ILE 121 A GLY 123 A GLY 123 BINDING SITE FOR RESIDUE SO4 A 160 A SO4 160 Software 5 A ARG 92 A ARG 92 5 1_555 A THR 98 A THR 98 5 1_555 A ARG 109 A ARG 109 5 1_555 A HOH 2101 C HOH 5 1_555 A HOH 2134 C HOH 5 1_555 182 P 63 2 2