0.018995 0.000000 0.000000 0.000000 0.017756 0.000000 0.000000 0.000000 0.023940 0.00000 0.00000 0.00000 Leonidas, D.D. Boix, E. Prill, R. Suzuki, M. Turton, R. Minson, K. Swaminathan, G.J. Youle, R.J. Acharya, K.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 52.646 56.318 41.771 C10 H15 N5 O10 P2 427.201 n ADENOSINE-5'-DIPHOSPHATE non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 276 15009 10.1074/JBC.M010585200 11154698 Mapping the Ribonucleolytic Active Site of Eosinophil-Derived Neurotoxin (Edn): High Resolution Crystal Structures of Edn Complexes with Adenylic Nucleotide Inhibitors 2001 UK J.Mol.Biol. JMOBAK 0070 0022-2836 260 540 10.1006/JMBI.1996.0420 8759319 X-Ray Crystallographic Structure of Recombinant Eosinophil-Derived Neurotoxin at 1.83 A Resolution 1996 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 IMAGE PLATE 1999-03-15 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE ENRAF-NONIUS 15611.750 EOSINOPHIL-DERIVED NEUROTOXIN 3.1.27.5 1 man polymer 427.201 ADENOSINE-5'-DIPHOSPHATE 1 syn non-polymer 18.015 water 132 nat water RNASE-2, RNASE-US, EDN no no MKPPQFTWAQWFETQHINMTSQQCTNAMQVINNYQRRCKNQNTFLLTTFANVVNVCGNPNMTCPSNKTRKNCHHSGSQVP LIHCNLTTPSPQNISNCRYAQTPANMFYIVACDNRDQRRDPPQYPVVPVHLDRII MKPPQFTWAQWFETQHINMTSQQCTNAMQVINNYQRRCKNQNTFLLTTFANVVNVCGNPNMTCPSNKTRKNCHHSGSQVP LIHCNLTTPSPQNISNCRYAQTPANMFYIVACDNRDQRRDPPQYPVVPVHLDRII A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n HUMAN BLOOD sample EOSINOPHIL SECRETORY GRANULES 9606 GRANULE HOMO SAPIENS 562 ESCHERICHIA COLI 1 1.34 44 6.50 1.5M AMMONIUM SULFATE, 0.1M SODIUM CACODYLATE PH 6.5, 5% ETHANOL struct repository Initial release Version format compliance Version format compliance Data collection Structure summary 1 0 2001-05-31 1 1 2011-05-08 1 2 2011-07-13 1 3 2018-05-30 _struct.title EOSINOPHIL-DERIVED NEUROTOXIN (EDN) - SULPHATE COMPLEX EOSINOPHIL-DERIVED NEUROTOXIN (EDN) - ADENOSINE-2'-5'-DIPHOSPHATE COMPLEX EOSINOPHIL-DERIVED NEUROTOXIN (EDN) - ADENOSINE-3'-5'-DIPHOSPHATE COMPLEX PDBE Y PDBE 2001-01-02 REL ADP ADENOSINE-5'-DIPHOSPHATE HOH water ADP 999 2 ADP ADP 999 A HOH 2001 3 HOH HOH 2001 A HOH 2002 3 HOH HOH 2002 A HOH 2003 3 HOH HOH 2003 A HOH 2004 3 HOH HOH 2004 A HOH 2005 3 HOH HOH 2005 A HOH 2006 3 HOH HOH 2006 A HOH 2007 3 HOH HOH 2007 A HOH 2008 3 HOH HOH 2008 A HOH 2009 3 HOH HOH 2009 A HOH 2010 3 HOH HOH 2010 A HOH 2011 3 HOH HOH 2011 A HOH 2012 3 HOH HOH 2012 A HOH 2013 3 HOH HOH 2013 A HOH 2014 3 HOH HOH 2014 A HOH 2015 3 HOH HOH 2015 A HOH 2016 3 HOH HOH 2016 A HOH 2017 3 HOH HOH 2017 A HOH 2018 3 HOH HOH 2018 A HOH 2019 3 HOH HOH 2019 A HOH 2020 3 HOH HOH 2020 A HOH 2021 3 HOH HOH 2021 A HOH 2022 3 HOH HOH 2022 A HOH 2023 3 HOH HOH 2023 A HOH 2024 3 HOH HOH 2024 A HOH 2025 3 HOH HOH 2025 A HOH 2026 3 HOH HOH 2026 A HOH 2027 3 HOH HOH 2027 A HOH 2028 3 HOH HOH 2028 A HOH 2029 3 HOH HOH 2029 A HOH 2030 3 HOH HOH 2030 A HOH 2031 3 HOH HOH 2031 A HOH 2032 3 HOH HOH 2032 A HOH 2033 3 HOH HOH 2033 A HOH 2034 3 HOH HOH 2034 A HOH 2035 3 HOH HOH 2035 A HOH 2036 3 HOH HOH 2036 A HOH 2037 3 HOH HOH 2037 A HOH 2038 3 HOH HOH 2038 A HOH 2039 3 HOH HOH 2039 A HOH 2040 3 HOH HOH 2040 A HOH 2041 3 HOH HOH 2041 A HOH 2042 3 HOH HOH 2042 A HOH 2043 3 HOH HOH 2043 A HOH 2044 3 HOH HOH 2044 A HOH 2045 3 HOH HOH 2045 A HOH 2046 3 HOH HOH 2046 A HOH 2047 3 HOH HOH 2047 A HOH 2048 3 HOH HOH 2048 A HOH 2049 3 HOH HOH 2049 A HOH 2050 3 HOH HOH 2050 A HOH 2051 3 HOH HOH 2051 A HOH 2052 3 HOH HOH 2052 A HOH 2053 3 HOH HOH 2053 A HOH 2054 3 HOH HOH 2054 A HOH 2055 3 HOH HOH 2055 A HOH 2056 3 HOH HOH 2056 A HOH 2057 3 HOH HOH 2057 A HOH 2058 3 HOH HOH 2058 A HOH 2059 3 HOH HOH 2059 A HOH 2060 3 HOH HOH 2060 A HOH 2061 3 HOH HOH 2061 A HOH 2062 3 HOH HOH 2062 A HOH 2063 3 HOH HOH 2063 A HOH 2064 3 HOH HOH 2064 A HOH 2065 3 HOH HOH 2065 A HOH 2066 3 HOH HOH 2066 A HOH 2067 3 HOH HOH 2067 A HOH 2068 3 HOH HOH 2068 A HOH 2069 3 HOH HOH 2069 A HOH 2070 3 HOH HOH 2070 A HOH 2071 3 HOH HOH 2071 A HOH 2072 3 HOH HOH 2072 A HOH 2073 3 HOH HOH 2073 A HOH 2074 3 HOH HOH 2074 A HOH 2075 3 HOH HOH 2075 A HOH 2076 3 HOH HOH 2076 A HOH 2077 3 HOH HOH 2077 A HOH 2078 3 HOH HOH 2078 A HOH 2079 3 HOH HOH 2079 A HOH 2080 3 HOH HOH 2080 A HOH 2081 3 HOH HOH 2081 A HOH 2082 3 HOH HOH 2082 A HOH 2083 3 HOH HOH 2083 A HOH 2084 3 HOH HOH 2084 A HOH 2085 3 HOH HOH 2085 A HOH 2086 3 HOH HOH 2086 A HOH 2087 3 HOH HOH 2087 A HOH 2088 3 HOH HOH 2088 A HOH 2089 3 HOH HOH 2089 A HOH 2090 3 HOH HOH 2090 A HOH 2091 3 HOH HOH 2091 A HOH 2092 3 HOH HOH 2092 A HOH 2093 3 HOH HOH 2093 A HOH 2094 3 HOH HOH 2094 A HOH 2095 3 HOH HOH 2095 A HOH 2096 3 HOH HOH 2096 A HOH 2097 3 HOH HOH 2097 A HOH 2098 3 HOH HOH 2098 A HOH 2099 3 HOH HOH 2099 A HOH 2100 3 HOH HOH 2100 A HOH 2101 3 HOH HOH 2101 A HOH 2102 3 HOH HOH 2102 A HOH 2103 3 HOH HOH 2103 A HOH 2104 3 HOH HOH 2104 A HOH 2105 3 HOH HOH 2105 A HOH 2106 3 HOH HOH 2106 A HOH 2107 3 HOH HOH 2107 A HOH 2108 3 HOH HOH 2108 A HOH 2109 3 HOH HOH 2109 A HOH 2110 3 HOH HOH 2110 A HOH 2111 3 HOH HOH 2111 A HOH 2112 3 HOH HOH 2112 A HOH 2113 3 HOH HOH 2113 A HOH 2114 3 HOH HOH 2114 A HOH 2115 3 HOH HOH 2115 A HOH 2116 3 HOH HOH 2116 A HOH 2117 3 HOH HOH 2117 A HOH 2118 3 HOH HOH 2118 A HOH 2119 3 HOH HOH 2119 A HOH 2120 3 HOH HOH 2120 A HOH 2121 3 HOH HOH 2121 A HOH 2122 3 HOH HOH 2122 A HOH 2123 3 HOH HOH 2123 A HOH 2124 3 HOH HOH 2124 A HOH 2125 3 HOH HOH 2125 A HOH 2126 3 HOH HOH 2126 A HOH 2127 3 HOH HOH 2127 A HOH 2128 3 HOH HOH 2128 A HOH 2129 3 HOH HOH 2129 A HOH 2130 3 HOH HOH 2130 A HOH 2131 3 HOH HOH 2131 A HOH 2132 3 HOH HOH 2132 A MET 0 n 1 MET 0 A LYS 1 n 2 LYS 1 A PRO 2 n 3 PRO 2 A PRO 3 n 4 PRO 3 A GLN 4 n 5 GLN 4 A PHE 5 n 6 PHE 5 A THR 6 n 7 THR 6 A TRP 7 n 8 TRP 7 A ALA 8 n 9 ALA 8 A GLN 9 n 10 GLN 9 A TRP 10 n 11 TRP 10 A PHE 11 n 12 PHE 11 A GLU 12 n 13 GLU 12 A THR 13 n 14 THR 13 A GLN 14 n 15 GLN 14 A HIS 15 n 16 HIS 15 A ILE 16 n 17 ILE 16 A ASN 17 n 18 ASN 17 A MET 18 n 19 MET 18 A THR 19 n 20 THR 19 A SER 20 n 21 SER 20 A GLN 21 n 22 GLN 21 A GLN 22 n 23 GLN 22 A CYS 23 n 24 CYS 23 A THR 24 n 25 THR 24 A ASN 25 n 26 ASN 25 A ALA 26 n 27 ALA 26 A MET 27 n 28 MET 27 A GLN 28 n 29 GLN 28 A VAL 29 n 30 VAL 29 A ILE 30 n 31 ILE 30 A ASN 31 n 32 ASN 31 A ASN 32 n 33 ASN 32 A TYR 33 n 34 TYR 33 A GLN 34 n 35 GLN 34 A ARG 35 n 36 ARG 35 A ARG 36 n 37 ARG 36 A CYS 37 n 38 CYS 37 A LYS 38 n 39 LYS 38 A ASN 39 n 40 ASN 39 A GLN 40 n 41 GLN 40 A ASN 41 n 42 ASN 41 A THR 42 n 43 THR 42 A PHE 43 n 44 PHE 43 A LEU 44 n 45 LEU 44 A LEU 45 n 46 LEU 45 A THR 46 n 47 THR 46 A THR 47 n 48 THR 47 A PHE 48 n 49 PHE 48 A ALA 49 n 50 ALA 49 A ASN 50 n 51 ASN 50 A VAL 51 n 52 VAL 51 A VAL 52 n 53 VAL 52 A ASN 53 n 54 ASN 53 A VAL 54 n 55 VAL 54 A CYS 55 n 56 CYS 55 A GLY 56 n 57 GLY 56 A ASN 57 n 58 ASN 57 A PRO 58 n 59 PRO 58 A ASN 59 n 60 ASN 59 A MET 60 n 61 MET 60 A THR 61 n 62 THR 61 A CYS 62 n 63 CYS 62 A PRO 63 n 64 PRO 63 A SER 64 n 65 SER 64 A ASN 65 n 66 ASN 65 A LYS 66 n 67 LYS 66 A THR 67 n 68 THR 67 A ARG 68 n 69 ARG 68 A LYS 69 n 70 LYS 69 A ASN 70 n 71 ASN 70 A CYS 71 n 72 CYS 71 A HIS 72 n 73 HIS 72 A HIS 73 n 74 HIS 73 A SER 74 n 75 SER 74 A GLY 75 n 76 GLY 75 A SER 76 n 77 SER 76 A GLN 77 n 78 GLN 77 A VAL 78 n 79 VAL 78 A PRO 79 n 80 PRO 79 A LEU 80 n 81 LEU 80 A ILE 81 n 82 ILE 81 A HIS 82 n 83 HIS 82 A CYS 83 n 84 CYS 83 A ASN 84 n 85 ASN 84 A LEU 85 n 86 LEU 85 A THR 86 n 87 THR 86 A THR 87 n 88 THR 87 A PRO 88 n 89 PRO 88 A SER 89 n 90 SER 89 A PRO 90 n 91 PRO 90 A GLN 91 n 92 GLN 91 A ASN 92 n 93 ASN 92 A ILE 93 n 94 ILE 93 A SER 94 n 95 SER 94 A ASN 95 n 96 ASN 95 A CYS 96 n 97 CYS 96 A ARG 97 n 98 ARG 97 A TYR 98 n 99 TYR 98 A ALA 99 n 100 ALA 99 A GLN 100 n 101 GLN 100 A THR 101 n 102 THR 101 A PRO 102 n 103 PRO 102 A ALA 103 n 104 ALA 103 A ASN 104 n 105 ASN 104 A MET 105 n 106 MET 105 A PHE 106 n 107 PHE 106 A TYR 107 n 108 TYR 107 A ILE 108 n 109 ILE 108 A VAL 109 n 110 VAL 109 A ALA 110 n 111 ALA 110 A CYS 111 n 112 CYS 111 A ASP 112 n 113 ASP 112 A ASN 113 n 114 ASN 113 A ARG 114 n 115 ARG 114 A ASP 115 n 116 ASP 115 A GLN 116 n 117 GLN 116 A ARG 117 n 118 ARG 117 A ARG 118 n 119 ARG 118 A ASP 119 n 120 ASP 119 A PRO 120 n 121 PRO 120 A PRO 121 n 122 PRO 121 A GLN 122 n 123 GLN 122 A TYR 123 n 124 TYR 123 A PRO 124 n 125 PRO 124 A VAL 125 n 126 VAL 125 A VAL 126 n 127 VAL 126 A PRO 127 n 128 PRO 127 A VAL 128 n 129 VAL 128 A HIS 129 n 130 HIS 129 A LEU 130 n 131 LEU 130 A ASP 131 n 132 ASP 131 A ARG 132 n 133 ARG 132 A ILE 133 n 134 ILE 133 A ILE 134 n 135 ILE 134 A author_and_software_defined_assembly PQS 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N PHE 43 A N PHE 44 A O ILE 81 A O ILE 82 A N THR 86 A N THR 87 A O ARG 97 A O ARG 98 A N HIS 72 A N HIS 73 A O VAL 109 A O VAL 110 A N ASP 112 A N ASP 113 A O VAL 126 A O VAL 127 1 A ARG 36 175.57 146.04 1 A LYS 66 -48.86 -18.68 1 A ASN 92 -178.37 103.74 PROTEIN_REP TOPHCSDX.PR PAR TOP LIG LIG 16.3 0.00 0.00 0.00 0.00 0.00 0.00 BULK SOLVENT MODEL USED 0.253 0.010 0.193 0.193 1.80 30.00 604 11720 5.2 97.7 RANDOM 10000000.00 0.001000 1 RESTRAINED THROUGHOUT 0.0 MOLECULAR REPLACEMENT 0.26 0.19 5.00 0.24 0.19 1.80 30.00 132 1248 27 0 1089 0.009 1.5 27.7 0.79 1.40 1.50 2.09 2.00 2.54 2.00 3.83 2.50 0.328 0.038 0.281 1.91 76 1674 6 4.3 89.9 14.1 1.800 30.000 1HI5 11749 2.000 0.06400 1 10.7000 5.000 97.4 1.80 1.86 4.200 0.26300 1 82.9 refinement X-PLOR 3.851 data reduction DENZO data scaling SCALEPACK phasing AMoRE EOSINOPHIL-DERIVED NEUROTOXIN (E.C.3.1.27.5) Eosinophil-derived Neurotoxin (EDN) - Adenosine-5'-Diphosphate Complex 1 N N 2 N N 3 N N A THR 6 A THR 7 HELX_P A ILE 16 A ILE 17 1 1 11 A GLN 22 A GLN 23 HELX_P A ARG 35 A ARG 36 1 2 14 A THR 47 A THR 48 HELX_P A CYS 55 A CYS 56 1 3 9 A ASN 92 A ASN 93 HELX_P A CYS 96 A CYS 97 5 4 5 disulf 2.032 A CYS 23 A SG CYS 24 1_555 A CYS 83 A SG CYS 84 1_555 disulf 2.033 A CYS 37 A SG CYS 38 1_555 A CYS 96 A SG CYS 97 1_555 disulf 2.037 A CYS 55 A SG CYS 56 1_555 A CYS 111 A SG CYS 112 1_555 disulf 2.031 A CYS 62 A SG CYS 63 1_555 A CYS 71 A SG CYS 72 1_555 HYDROLASE HYDROLASE, RNASE-2, RNASE US, RIBONUCLEASE RNKD_HUMAN UNP 1 P10153 27 161 1HI5 0 134 P10153 A 1 1 135 1 cloning artifact MET 0 1HI5 A P10153 UNP 1 3 4 anti-parallel anti-parallel anti-parallel anti-parallel A GLN 40 A GLN 41 A LEU 44 A LEU 45 A VAL 78 A VAL 79 A THR 87 A THR 88 A ARG 97 A ARG 98 A MET 105 A MET 106 A ASN 59 A ASN 60 A MET 60 A MET 61 A CYS 71 A CYS 72 A HIS 73 A HIS 74 A TYR 107 A TYR 108 A ASN 113 A ASN 114 A VAL 125 A VAL 126 A ILE 133 A ILE 134 BINDING SITE FOR RESIDUE ADP A 999 Software 12 A GLN 14 A GLN 15 12 1_555 A HIS 15 A HIS 16 12 1_555 A LYS 38 A LYS 39 12 1_555 A GLN 40 A GLN 41 12 1_555 A HIS 82 A HIS 83 12 1_555 A HIS 129 A HIS 130 12 1_555 A LEU 130 A LEU 131 12 1_555 A HOH 2016 C HOH 12 1_555 A HOH 2052 C HOH 12 1_555 A HOH 2123 C HOH 12 1_555 A HOH 2128 C HOH 12 1_555 A HOH 2131 C HOH 12 1_555 19 P 21 21 21