0.029940 0.000000 0.000000 0.000000 0.015576 0.000000 0.000000 0.000000 0.010050 0.00000 0.00000 0.00000 Priestle, J.P. Gruetter, M.G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 33.400 64.200 99.500 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C31 H51 N5 O5 573.767 ACETYL-NH-VAL-CYCLOHEXYL-CH2[NCH2CHOH]CH2-BENZYL-VAL-NH-ACETYL CGP 53820 non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N C N 75 N C N 76 N O N 77 N N N 78 S C N 79 N C N 80 N C N 81 N C N 82 N C N 83 N O N 84 N N N 85 S C N 86 N C Y 87 N C Y 88 N C Y 89 N C Y 90 N C Y 91 N C Y 92 N C N 93 S C N 94 N O N 95 N C N 96 N N N 97 N C N 98 N C N 99 N C N 100 N C N 101 N C N 102 N C N 103 N C N 104 N N N 105 N C N 106 N O N 107 S C N 108 N N N 109 N C N 110 N C N 111 N C N 112 N C N 113 N O N 114 N C N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N N N 167 S C N 168 N C N 169 N O N 170 N C N 171 N C N 172 N C N 173 N O N 174 N N N 175 N O N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N N N 187 S C N 188 N C N 189 N O N 190 N C N 191 N C N 192 N C N 193 N O N 194 N O N 195 N O N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 N C N 207 N C N 208 N O N 209 N O N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N O N 216 N H N 217 N H N 218 N N N 219 S C N 220 N C N 221 N O N 222 S C N 223 N C N 224 N C N 225 N C N 226 N O N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N N N 241 S C N 242 N C N 243 N O N 244 N C N 245 N C N 246 N C N 247 N C N 248 N O N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N N N 263 S C N 264 N C N 265 N O N 266 N C N 267 N C N 268 N C N 269 N C N 270 N N N 271 N O N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C N 292 N C N 293 N S N 294 N C N 295 N O N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N N N 308 S C N 309 N C N 310 N O N 311 N C Y 312 N C Y 313 N C Y 314 N C Y 315 N C Y 316 N C Y 317 N C N 318 N O N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N N N 331 S C N 332 N C N 333 N O N 334 N C N 335 N C N 336 N C N 337 N O N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N N N 348 S C N 349 N C N 350 N O N 351 N C N 352 N O N 353 N O N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N S N 362 N O N 363 N O N 364 N O N 365 N O N 366 N N N 367 S C N 368 N C N 369 N O N 370 R C N 371 N O N 372 N C N 373 N O N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N N N 384 S C N 385 N C N 386 N O N 387 N C Y 388 N C Y 389 N C Y 390 N C Y 391 N N Y 392 N C Y 393 N C Y 394 N C Y 395 N C Y 396 N C N 397 N O N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N N N 411 S C N 412 N C N 413 N O N 414 N C Y 415 N C Y 416 N C Y 417 N C Y 418 N C Y 419 N C Y 420 N C N 421 N O N 422 N O N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N N N 435 S C N 436 N C N 437 N O N 438 N C N 439 N C N 440 N C N 441 N O N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N doub N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N doub N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing Y 100 N doub Y 101 N sing Y 102 N sing N 103 N sing Y 104 N doub N 105 N sing Y 106 N sing N 107 N sing Y 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N doub N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N doub N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N doub N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N doub N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N doub N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N doub N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N doub N 303 N sing N 304 N sing N 305 N sing N 306 N sing Y 307 N doub Y 308 N sing Y 309 N sing N 310 N sing Y 311 N doub N 312 N sing Y 313 N doub N 314 N sing Y 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N doub N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N doub N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N doub N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N doub N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N doub N 376 N sing N 377 N sing N 378 N sing N 379 N sing Y 380 N doub Y 381 N sing Y 382 N sing N 383 N sing Y 384 N doub Y 385 N sing Y 386 N sing N 387 N sing Y 388 N sing Y 389 N doub N 390 N sing Y 391 N doub N 392 N sing Y 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N doub N 404 N sing N 405 N sing N 406 N sing N 407 N sing Y 408 N doub Y 409 N sing Y 410 N sing N 411 N sing Y 412 N doub N 413 N sing Y 414 N doub N 415 N sing Y 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N doub N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing UK Structure STRUE6 2005 0969-2126 3 381 389 10.1016/S0969-2126(01)00169-1 7613867 Comparative analysis of the X-ray structures of HIV-1 and HIV-2 proteases in complex with CGP 53820, a novel pseudosymmetric inhibitor. 1995 UK Bioorg.Med.Chem.Lett. BMCLE8 1127 0960-894X 3 2837 Novel Pseudosymmetric Inhibitors of HIV-1 Protease 1993 10.2210/pdb1hii/pdb pdb_00001hii 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 DIFFRACTOMETER 1993-02 ENRAF-NONIUS FAST x-ray 1 1.5418 1.0 1.5418 10728.337 HIV-2 PROTEASE 3.4.23.- 2 man polymer 96.063 SULFATE ION 2 syn non-polymer 573.767 ACETYL-NH-VAL-CYCLOHEXYL-CH2[NCH2CHOH]CH2-BENZYL-VAL-NH-ACETYL 1 syn non-polymer 18.015 water 194 nat water no no PQFSLWKRPVVTAYIEGQPVEVLLDTGADDSIVAGIELGNNYSPKIVGGIGGFINTKEYKNVEIEVLNKKVRATIMTGDT PINIFGRNILTALGMSLNL PQFSLWKRPVVTAYIEGQPVEVLLDTGADDSIVAGIELGNNYSPKIVGGIGGFINTKEYKNVEIEVLNKKVRATIMTGDT PINIFGRNILTALGMSLNL A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lentivirus Escherichia sample S2 POL 11709 Human immunodeficiency virus 2 POL 562 Escherichia coli PT7Q10H 2.48 50.50 diffrn_detector pdbx_database_status chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Version format compliance Data collection Other Data collection Database references Derived calculations 1 0 1995-07-10 1 1 2008-03-03 1 2 2011-07-13 1 3 2018-04-18 1 4 2024-02-07 _diffrn_detector.detector _pdbx_database_status.process_site _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1995-03-31 REL SO4 SULFATE ION C20 ACETYL-NH-VAL-CYCLOHEXYL-CH2[NCH2CHOH]CH2-BENZYL-VAL-NH-ACETYL HOH water COMPND MOLECULE: HIV-2 PROTEASE. ROD ISOLATE. SOURCE 1 MOLECULE_NAME: CGP 53820. PSEUDOSYMMETRIC TRANSITION-STATE ANALOG. SOURCE 2 MOLECULE_NAME: SULFATE ION (SO4). PSEUDOSYMMETRIC TRANSITION-STATE ANALOG. SO4 1 2 SO4 SO4 100 A SO4 2 2 SO4 SO4 100 B C20 100 3 C20 C20 101 B HOH 4 4 HOH HOH 101 A HOH 6 4 HOH HOH 102 A HOH 7 4 HOH HOH 103 A HOH 9 4 HOH HOH 104 A HOH 10 4 HOH HOH 105 A HOH 13 4 HOH HOH 106 A HOH 15 4 HOH HOH 107 A HOH 20 4 HOH HOH 108 A HOH 22 4 HOH HOH 109 A HOH 23 4 HOH HOH 110 A HOH 27 4 HOH HOH 111 A HOH 29 4 HOH HOH 112 A HOH 35 4 HOH HOH 113 A HOH 37 4 HOH HOH 114 A HOH 39 4 HOH HOH 115 A HOH 41 4 HOH HOH 116 A HOH 42 4 HOH HOH 117 A HOH 43 4 HOH HOH 118 A HOH 44 4 HOH HOH 119 A HOH 45 4 HOH HOH 120 A HOH 46 4 HOH HOH 121 A HOH 49 4 HOH HOH 122 A HOH 51 4 HOH HOH 123 A HOH 53 4 HOH HOH 124 A HOH 58 4 HOH HOH 125 A HOH 62 4 HOH HOH 126 A HOH 63 4 HOH HOH 127 A HOH 69 4 HOH HOH 128 A HOH 72 4 HOH HOH 129 A HOH 73 4 HOH HOH 130 A HOH 74 4 HOH HOH 131 A HOH 78 4 HOH HOH 132 A HOH 79 4 HOH HOH 133 A HOH 80 4 HOH HOH 134 A HOH 81 4 HOH HOH 135 A HOH 82 4 HOH HOH 136 A HOH 83 4 HOH HOH 137 A HOH 84 4 HOH HOH 138 A HOH 86 4 HOH HOH 139 A HOH 88 4 HOH HOH 140 A HOH 89 4 HOH HOH 141 A HOH 91 4 HOH HOH 142 A HOH 94 4 HOH HOH 143 A HOH 97 4 HOH HOH 144 A HOH 99 4 HOH HOH 145 A HOH 103 4 HOH HOH 146 A HOH 104 4 HOH HOH 147 A HOH 106 4 HOH HOH 148 A HOH 107 4 HOH HOH 149 A HOH 109 4 HOH HOH 150 A HOH 112 4 HOH HOH 151 A HOH 115 4 HOH HOH 152 A HOH 116 4 HOH HOH 153 A HOH 118 4 HOH HOH 154 A HOH 119 4 HOH HOH 155 A HOH 120 4 HOH HOH 156 A HOH 121 4 HOH HOH 157 A HOH 122 4 HOH HOH 158 A HOH 125 4 HOH HOH 159 A HOH 128 4 HOH HOH 160 A HOH 129 4 HOH HOH 161 A HOH 130 4 HOH HOH 162 A HOH 131 4 HOH HOH 163 A HOH 132 4 HOH HOH 164 A HOH 133 4 HOH HOH 165 A HOH 136 4 HOH HOH 166 A HOH 137 4 HOH HOH 167 A HOH 139 4 HOH HOH 168 A HOH 145 4 HOH HOH 169 A HOH 149 4 HOH HOH 170 A HOH 151 4 HOH HOH 171 A HOH 153 4 HOH HOH 172 A HOH 154 4 HOH HOH 173 A HOH 156 4 HOH HOH 174 A HOH 159 4 HOH HOH 175 A HOH 160 4 HOH HOH 176 A HOH 164 4 HOH HOH 177 A HOH 166 4 HOH HOH 178 A HOH 167 4 HOH HOH 179 A HOH 170 4 HOH HOH 180 A HOH 172 4 HOH HOH 181 A HOH 173 4 HOH HOH 182 A HOH 174 4 HOH HOH 183 A HOH 178 4 HOH HOH 184 A HOH 180 4 HOH HOH 185 A HOH 183 4 HOH HOH 186 A HOH 186 4 HOH HOH 187 A HOH 190 4 HOH HOH 188 A HOH 1 4 HOH HOH 102 B HOH 2 4 HOH HOH 103 B HOH 3 4 HOH HOH 104 B HOH 5 4 HOH HOH 105 B HOH 8 4 HOH HOH 106 B HOH 11 4 HOH HOH 107 B HOH 12 4 HOH HOH 108 B HOH 14 4 HOH HOH 109 B HOH 16 4 HOH HOH 110 B HOH 17 4 HOH HOH 111 B HOH 18 4 HOH HOH 112 B HOH 19 4 HOH HOH 113 B HOH 21 4 HOH HOH 114 B HOH 24 4 HOH HOH 115 B HOH 25 4 HOH HOH 116 B HOH 26 4 HOH HOH 117 B HOH 28 4 HOH HOH 118 B HOH 30 4 HOH HOH 119 B HOH 31 4 HOH HOH 120 B HOH 32 4 HOH HOH 121 B HOH 33 4 HOH HOH 122 B HOH 34 4 HOH HOH 123 B HOH 36 4 HOH HOH 124 B HOH 38 4 HOH HOH 125 B HOH 40 4 HOH HOH 126 B HOH 47 4 HOH HOH 127 B HOH 48 4 HOH HOH 128 B HOH 50 4 HOH HOH 129 B HOH 52 4 HOH HOH 130 B HOH 54 4 HOH HOH 131 B HOH 55 4 HOH HOH 132 B HOH 56 4 HOH HOH 133 B HOH 57 4 HOH HOH 134 B HOH 59 4 HOH HOH 135 B HOH 60 4 HOH HOH 136 B HOH 61 4 HOH HOH 137 B HOH 64 4 HOH HOH 138 B HOH 65 4 HOH HOH 139 B HOH 66 4 HOH HOH 140 B HOH 67 4 HOH HOH 141 B HOH 68 4 HOH HOH 142 B HOH 70 4 HOH HOH 143 B HOH 71 4 HOH HOH 144 B HOH 75 4 HOH HOH 145 B HOH 76 4 HOH HOH 146 B HOH 77 4 HOH HOH 147 B HOH 85 4 HOH HOH 148 B HOH 87 4 HOH HOH 149 B HOH 90 4 HOH HOH 150 B HOH 92 4 HOH HOH 151 B HOH 93 4 HOH HOH 152 B HOH 95 4 HOH HOH 153 B HOH 96 4 HOH HOH 154 B HOH 98 4 HOH HOH 155 B HOH 100 4 HOH HOH 156 B HOH 101 4 HOH HOH 157 B HOH 102 4 HOH HOH 158 B HOH 105 4 HOH HOH 159 B HOH 108 4 HOH HOH 160 B HOH 110 4 HOH HOH 161 B HOH 111 4 HOH HOH 162 B HOH 113 4 HOH HOH 163 B HOH 114 4 HOH HOH 164 B HOH 117 4 HOH HOH 165 B HOH 123 4 HOH HOH 166 B HOH 124 4 HOH HOH 167 B HOH 126 4 HOH HOH 168 B HOH 127 4 HOH HOH 169 B HOH 134 4 HOH HOH 170 B HOH 135 4 HOH HOH 171 B HOH 138 4 HOH HOH 172 B HOH 140 4 HOH HOH 173 B HOH 141 4 HOH HOH 174 B HOH 142 4 HOH HOH 175 B HOH 143 4 HOH HOH 176 B HOH 144 4 HOH HOH 177 B HOH 146 4 HOH HOH 178 B HOH 147 4 HOH HOH 179 B HOH 148 4 HOH HOH 180 B HOH 150 4 HOH HOH 181 B HOH 152 4 HOH HOH 182 B HOH 155 4 HOH HOH 183 B HOH 157 4 HOH HOH 184 B HOH 158 4 HOH HOH 185 B HOH 161 4 HOH HOH 186 B HOH 162 4 HOH HOH 187 B HOH 163 4 HOH HOH 188 B HOH 165 4 HOH HOH 189 B HOH 168 4 HOH HOH 190 B HOH 169 4 HOH HOH 191 B HOH 171 4 HOH HOH 192 B HOH 175 4 HOH HOH 193 B HOH 176 4 HOH HOH 194 B HOH 177 4 HOH HOH 195 B HOH 179 4 HOH HOH 196 B HOH 181 4 HOH HOH 197 B HOH 182 4 HOH HOH 198 B HOH 184 4 HOH HOH 199 B HOH 185 4 HOH HOH 200 B HOH 187 4 HOH HOH 201 B HOH 188 4 HOH HOH 202 B HOH 189 4 HOH HOH 203 B HOH 191 4 HOH HOH 204 B HOH 192 4 HOH HOH 205 B HOH 193 4 HOH HOH 206 B HOH 194 4 HOH HOH 207 B PRO 1 n 1 PRO 1 A GLN 2 n 2 GLN 2 A PHE 3 n 3 PHE 3 A SER 4 n 4 SER 4 A LEU 5 n 5 LEU 5 A TRP 6 n 6 TRP 6 A LYS 7 n 7 LYS 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A VAL 10 n 10 VAL 10 A VAL 11 n 11 VAL 11 A THR 12 n 12 THR 12 A ALA 13 n 13 ALA 13 A TYR 14 n 14 TYR 14 A ILE 15 n 15 ILE 15 A GLU 16 n 16 GLU 16 A GLY 17 n 17 GLY 17 A GLN 18 n 18 GLN 18 A PRO 19 n 19 PRO 19 A VAL 20 n 20 VAL 20 A GLU 21 n 21 GLU 21 A VAL 22 n 22 VAL 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASP 25 n 25 ASP 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A ASP 30 n 30 ASP 30 A SER 31 n 31 SER 31 A ILE 32 n 32 ILE 32 A VAL 33 n 33 VAL 33 A ALA 34 n 34 ALA 34 A GLY 35 n 35 GLY 35 A ILE 36 n 36 ILE 36 A GLU 37 n 37 GLU 37 A LEU 38 n 38 LEU 38 A GLY 39 n 39 GLY 39 A ASN 40 n 40 ASN 40 A ASN 41 n 41 ASN 41 A TYR 42 n 42 TYR 42 A SER 43 n 43 SER 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A ILE 46 n 46 ILE 46 A VAL 47 n 47 VAL 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A PHE 53 n 53 PHE 53 A ILE 54 n 54 ILE 54 A ASN 55 n 55 ASN 55 A THR 56 n 56 THR 56 A LYS 57 n 57 LYS 57 A GLU 58 n 58 GLU 58 A TYR 59 n 59 TYR 59 A LYS 60 n 60 LYS 60 A ASN 61 n 61 ASN 61 A VAL 62 n 62 VAL 62 A GLU 63 n 63 GLU 63 A ILE 64 n 64 ILE 64 A GLU 65 n 65 GLU 65 A VAL 66 n 66 VAL 66 A LEU 67 n 67 LEU 67 A ASN 68 n 68 ASN 68 A LYS 69 n 69 LYS 69 A LYS 70 n 70 LYS 70 A VAL 71 n 71 VAL 71 A ARG 72 n 72 ARG 72 A ALA 73 n 73 ALA 73 A THR 74 n 74 THR 74 A ILE 75 n 75 ILE 75 A MET 76 n 76 MET 76 A THR 77 n 77 THR 77 A GLY 78 n 78 GLY 78 A ASP 79 n 79 ASP 79 A THR 80 n 80 THR 80 A PRO 81 n 81 PRO 81 A ILE 82 n 82 ILE 82 A ASN 83 n 83 ASN 83 A ILE 84 n 84 ILE 84 A PHE 85 n 85 PHE 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A ILE 89 n 89 ILE 89 A LEU 90 n 90 LEU 90 A THR 91 n 91 THR 91 A ALA 92 n 92 ALA 92 A LEU 93 n 93 LEU 93 A GLY 94 n 94 GLY 94 A MET 95 n 95 MET 95 A SER 96 n 96 SER 96 A LEU 97 n 97 LEU 97 A ASN 98 n 98 ASN 98 A LEU 99 n 99 LEU 99 A PRO 1 n 1 PRO 1 B GLN 2 n 2 GLN 2 B PHE 3 n 3 PHE 3 B SER 4 n 4 SER 4 B LEU 5 n 5 LEU 5 B TRP 6 n 6 TRP 6 B LYS 7 n 7 LYS 7 B ARG 8 n 8 ARG 8 B PRO 9 n 9 PRO 9 B VAL 10 n 10 VAL 10 B VAL 11 n 11 VAL 11 B THR 12 n 12 THR 12 B ALA 13 n 13 ALA 13 B TYR 14 n 14 TYR 14 B ILE 15 n 15 ILE 15 B GLU 16 n 16 GLU 16 B GLY 17 n 17 GLY 17 B GLN 18 n 18 GLN 18 B PRO 19 n 19 PRO 19 B VAL 20 n 20 VAL 20 B GLU 21 n 21 GLU 21 B VAL 22 n 22 VAL 22 B LEU 23 n 23 LEU 23 B LEU 24 n 24 LEU 24 B ASP 25 n 25 ASP 25 B THR 26 n 26 THR 26 B GLY 27 n 27 GLY 27 B ALA 28 n 28 ALA 28 B ASP 29 n 29 ASP 29 B ASP 30 n 30 ASP 30 B SER 31 n 31 SER 31 B ILE 32 n 32 ILE 32 B VAL 33 n 33 VAL 33 B ALA 34 n 34 ALA 34 B GLY 35 n 35 GLY 35 B ILE 36 n 36 ILE 36 B GLU 37 n 37 GLU 37 B LEU 38 n 38 LEU 38 B GLY 39 n 39 GLY 39 B ASN 40 n 40 ASN 40 B ASN 41 n 41 ASN 41 B TYR 42 n 42 TYR 42 B SER 43 n 43 SER 43 B PRO 44 n 44 PRO 44 B LYS 45 n 45 LYS 45 B ILE 46 n 46 ILE 46 B VAL 47 n 47 VAL 47 B GLY 48 n 48 GLY 48 B GLY 49 n 49 GLY 49 B ILE 50 n 50 ILE 50 B GLY 51 n 51 GLY 51 B GLY 52 n 52 GLY 52 B PHE 53 n 53 PHE 53 B ILE 54 n 54 ILE 54 B ASN 55 n 55 ASN 55 B THR 56 n 56 THR 56 B LYS 57 n 57 LYS 57 B GLU 58 n 58 GLU 58 B TYR 59 n 59 TYR 59 B LYS 60 n 60 LYS 60 B ASN 61 n 61 ASN 61 B VAL 62 n 62 VAL 62 B GLU 63 n 63 GLU 63 B ILE 64 n 64 ILE 64 B GLU 65 n 65 GLU 65 B VAL 66 n 66 VAL 66 B LEU 67 n 67 LEU 67 B ASN 68 n 68 ASN 68 B LYS 69 n 69 LYS 69 B LYS 70 n 70 LYS 70 B VAL 71 n 71 VAL 71 B ARG 72 n 72 ARG 72 B ALA 73 n 73 ALA 73 B THR 74 n 74 THR 74 B ILE 75 n 75 ILE 75 B MET 76 n 76 MET 76 B THR 77 n 77 THR 77 B GLY 78 n 78 GLY 78 B ASP 79 n 79 ASP 79 B THR 80 n 80 THR 80 B PRO 81 n 81 PRO 81 B ILE 82 n 82 ILE 82 B ASN 83 n 83 ASN 83 B ILE 84 n 84 ILE 84 B PHE 85 n 85 PHE 85 B GLY 86 n 86 GLY 86 B ARG 87 n 87 ARG 87 B ASN 88 n 88 ASN 88 B ILE 89 n 89 ILE 89 B LEU 90 n 90 LEU 90 B THR 91 n 91 THR 91 B ALA 92 n 92 ALA 92 B LEU 93 n 93 LEU 93 B GLY 94 n 94 GLY 94 B MET 95 n 95 MET 95 B SER 96 n 96 SER 96 B LEU 97 n 97 LEU 97 B ASN 98 n 98 ASN 98 B LEU 99 n 99 LEU 99 B author_and_software_defined_assembly PISA 2 dimeric 5090 -42 9470 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O GLN 18 A O GLN 18 A N ILE 15 A N ILE 15 A O TYR 14 A O TYR 14 A N GLU 65 A N GLU 65 A O VAL 62 A O VAL 62 A N ALA 73 A N ALA 73 A O SER 43 A O SER 43 A N GLU 58 A N GLU 58 A O LYS 57 A O LYS 57 A N THR 77 A N THR 77 A O SER 96 A O SER 96 B N ASN 98 B N ASN 98 B O GLN 18 B O GLN 18 B N ILE 15 B N ILE 15 B O TYR 14 B O TYR 14 B N GLU 65 B N GLU 65 B O VAL 62 B O VAL 62 B N ALA 73 B N ALA 73 B O SER 43 B O SER 43 B N GLU 58 B N GLU 58 B O LYS 57 B O LYS 57 B N THR 77 B N THR 77 22.8 0.138 2.3 6.0 8879 94.1 1 0.0 2.3 6.0 194 1755 51 0 1510 0.012 2.00 1HII 9517 0.0 0.051 1 4.13 94.3 model building X-PLOR refinement TNT refinement X-PLOR data reduction MADNES phasing X-PLOR COMPARATIVE ANALYSIS OF THE X-RAY STRUCTURES OF HIV-1 AND HIV-2 PROTEASES IN COMPLEX WITH CGP 53820, A NOVEL PSEUDOSYMMETRIC INHIBITOR 1 N N 1 N N 2 N N 2 N N 3 N N 4 N N 4 N N MTRIX THE TRANSFORMATIONS PRESENTED ON MTRIX RECORDS BELOW DESCRIBE NON-CRYSTALLOGRAPHIC RELATIONSHIPS AMONG THE VARIOUS DOMAINS IN THIS ENTRY. APPLYING THE APPROPRIATE MTRIX TRANSFORMATION TO THE RESIDUES LISTED FIRST WILL YIELD APPROXIMATE COORDINATES FOR THE RESIDUES LISTED SECOND. APPLIED TO TRANSFORMED TO MTRIX RESIDUES RESIDUES RMSD M1 A 1 .. A 99 B 1 .. B 99 0.479 A ARG 87 A ARG 87 HELX_P A LEU 93 A LEU 93 1 1 7 B ARG 87 B ARG 87 HELX_P B LEU 93 B LEU 93 1 2 7 HYDROLASE (ASPARTIC PROTEINASE) ASPARTATE PROTEASE, INHIBITED, HIV, HYDROLASE (ASPARTIC PROTEINASE) given 0.263360 -0.907330 0.327720 -0.908970 -0.347180 -0.230730 0.323130 -0.237120 -0.916170 35.48000 58.68000 26.44000 POL_HV2RO UNP 1 1 P04584 TGRFFRTGPLGKEAPQLPRGPSSAGADTNSTPSGSSSGSTGEIYAAREKTERAERETIQGSDRGLTAPRAGGDTIQGATN RGLAAPQFSLWKRPVVTAYIEGQPVEVLLDTGADDSIVAGIELGNNYSPKIVGGIGGFINTKEYKNVEIEVLNKKVRATI MTGDTPINIFGRNILTALGMSLNLPVAKVEPIKIMLKPGKDGPKLRQWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPY NTPTFAIKKKDKNKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKKRRITVLDVGDAYFSIPLHEDFRPYTAFTLPSVN NAEPGKRYIYKVLPQGWKGSPAIFQHTMRQVLEPFRKANKDVIIIQYMDDILIASDRTDLEHDRVVLQLKELLNGLGFST PDEKFQKDPPYHWMGYELWPTKWKLQKIQLPQKEIWTVNDIQKLVGVLNWAAQLYPGIKTKHLCRLIRGKMTLTEEVQWT ELAEAELEENRIILSQEQEGHYYQEEKELEATVQKDQENQWTYKIHQEEKILKVGKYAKVKNTHTNGIRLLAQVVQKIGK EALVIWGRIPKFHLPVEREIWEQWWDNYWQVTWIPDWDFVSTPPLVRLAFNLVGDPIPGAETFYTDGSCNRQSKEGKAGY VTDRGKDKVKKLEQTTNQQAELEAFAMALTDSGPKVNIIVDSQYVMGISASQPTESESKIVNQIIEEMIKKEAIYVAWVP AHKGIGGNQEVDHLVSQGIRQVLFLEKIEPAQEEHEKYHSNVKELSHKFGIPNLVARQIVNSCAQCQQKGEAIHGQVNAE LGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGANFTSQEVKMVAWWIGIEQ SFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAIHCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKN SKLKDFRVYFREGRDQLWKGPGELLWKGEGAVLVKVGTDIKIIPRRKAKIIRDYGGRQEMDSGSHLEGAREDGEMA 86 184 1HII 1 99 P04584 A 1 1 99 86 184 1HII 1 99 P04584 B 1 1 99 4 3 2 4 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLN 18 A GLN 18 A LEU 23 A LEU 23 A VAL 10 A VAL 10 A ILE 15 A ILE 15 A VAL 62 A VAL 62 A VAL 66 A VAL 66 A LYS 69 A LYS 69 A ALA 73 A ALA 73 A TYR 42 A TYR 42 A GLY 48 A GLY 48 A PHE 53 A PHE 53 A TYR 59 A TYR 59 A ILE 75 A ILE 75 A THR 77 A THR 77 A SER 96 A SER 96 A ASN 98 A ASN 98 B SER 96 B SER 96 B ASN 98 B ASN 98 B GLN 18 B GLN 18 B LEU 23 B LEU 23 B VAL 10 B VAL 10 B ILE 15 B ILE 15 B VAL 62 B VAL 62 B VAL 66 B VAL 66 B LYS 69 B LYS 69 B ALA 73 B ALA 73 B SER 43 B SER 43 B GLY 49 B GLY 49 B GLY 52 B GLY 52 B TYR 59 B TYR 59 B ILE 75 B ILE 75 B THR 77 B THR 77 Unknown 2 Unknown 6 Unknown 9 Unknown 9 Unknown 6 BINDING SITE FOR RESIDUE SO4 A 100 A SO4 100 Software 6 BINDING SITE FOR RESIDUE SO4 B 100 B SO4 100 Software 4 BINDING SITE FOR RESIDUE C20 B 101 B C20 101 Software 16 A ASP 25 A ASP 25 2 1_555 B ASP 25 B ASP 25 2 1_555 A ILE 50 A ILE 50 6 1_555 B ALA 28 B ALA 28 6 1_555 B ASP 30 B ASP 30 6 1_555 B ILE 32 B ILE 32 6 1_555 B VAL 47 B VAL 47 6 1_555 B ILE 84 B ILE 84 6 1_555 A ARG 8 A ARG 8 9 1_555 A LEU 23 A LEU 23 9 1_555 A THR 80 A THR 80 9 1_555 A PRO 81 A PRO 81 9 1_555 A ILE 82 A ILE 82 9 1_555 A ILE 84 A ILE 84 9 1_555 B GLY 27 B GLY 27 9 1_555 B GLY 49 B GLY 49 9 1_555 B ILE 50 B ILE 50 9 1_555 A GLY 27 A GLY 27 9 1_555 A GLY 49 A GLY 49 9 1_555 A ILE 50 A ILE 50 9 1_555 B ARG 8 B ARG 8 9 1_555 B LEU 23 B LEU 23 9 1_555 B THR 80 B THR 80 9 1_555 B PRO 81 B PRO 81 9 1_555 B ILE 82 B ILE 82 9 1_555 B ILE 84 B ILE 84 9 1_555 A ALA 28 A ALA 28 6 1_555 A ASP 30 A ASP 30 6 1_555 A ILE 32 A ILE 32 6 1_555 A VAL 47 A VAL 47 6 1_555 A ILE 84 A ILE 84 6 1_555 B ILE 50 B ILE 50 6 1_555 A LYS 69 A LYS 69 6 4_455 A THR 74 A THR 74 6 1_555 A ASN 88 A ASN 88 6 1_555 A HOH 112 F HOH 6 1_555 A HOH 128 F HOH 6 1_555 A HOH 174 F HOH 6 1_555 A PRO 1 A PRO 1 4 1_455 A GLN 2 A GLN 2 4 1_455 B ARG 8 B ARG 8 4 1_555 B HOH 171 G HOH 4 1_555 A ASP 25 A ASP 25 16 1_555 A GLY 27 A GLY 27 16 1_555 A ALA 28 A ALA 28 16 1_555 A ASP 29 A ASP 29 16 1_555 A GLY 48 A GLY 48 16 1_555 A GLY 49 A GLY 49 16 1_555 A ILE 82 A ILE 82 16 1_555 B ASP 25 B ASP 25 16 1_555 B GLY 27 B GLY 27 16 1_555 B ALA 28 B ALA 28 16 1_555 B ASP 29 B ASP 29 16 1_555 B VAL 47 B VAL 47 16 1_555 B GLY 48 B GLY 48 16 1_555 B GLY 49 B GLY 49 16 1_555 B ILE 50 B ILE 50 16 1_555 B HOH 102 G HOH 16 1_555 19 P 21 21 21