0.015748 0.000000 0.008059 0.000000 0.013624 0.000000 0.000000 0.000000 0.017916 0.00000 0.00000 0.00000 RESIDUES PRO L 8, PRO L 95, PRO L 141 , PRO H 149, PRO H 151, AND PRO H 200 ARE CIS PROLINES. Rini, J.M. Wilson, I.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 117.10 90.00 63.500 73.400 62.700 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Science SCIEAS 0038 0036-8075 255 959 965 1546293 Structural evidence for induced fit as a mechanism for antibody-antigen recognition. 1992 US J.Biol.Chem. JBCHA3 0071 0021-9258 263 17100 Preliminary Crystallographic Data, Primary Sequence, and Binding Data for an Anti-Peptide Fab and its Complex with a Synthetic Peptide from Influenza Virus Hemagglutinin 1988 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 23911.369 IGG2A-KAPPA 17/9 FAB (LIGHT CHAIN) 1 man polymer 23677.441 IGG2A-KAPPA 17/9 FAB (HEAVY CHAIN) 1 man polymer 928.940 INFLUENZA HEMAGGLUTININ HA1 (STRAIN X47) (RESIDUES 100-107) 1 man polymer 18.015 water 22 nat water no no DIVMTQSPSSLTVTAGEKVTMSCTSSQSLFNSGKQKNYLTWYQQKPGQPPKVLIYWASTRESGVPDRFTGSGSGTDFTLT ISSVQAEDLAVYYCQNDYSNPLTFGGGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR DIVMTQSPSSLTVTAGEKVTMSCTSSQSLFNSGKQKNYLTWYQQKPGQPPKVLIYWASTRESGVPDRFTGSGSGTDFTLT ISSVQAEDLAVYYCQNDYSNPLTFGGGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR L polypeptide(L) no no EVQLVESGGDLVKPGGSLKLSCAASGFSFSSYGMSWVRQTPDKRLEWVATISNGGGYTYYPDSVKGRFTISRDNAKNTLY LQMSSLKSEDSAMYYCARRERYDENGFAYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLT WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR EVQLVESGGDLVKPGGSLKLSCAASGFSFSSYGMSWVRQTPDKRLEWVATISNGGGYTYYPDSVKGRFTISRDNAKNTLY LQMSSLKSEDSAMYYCARRERYDENGFAYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLT WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR H polypeptide(L) no no YDVPDYAS YDVPDYAS P polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse sample 10090 Mus musculus house mouse sample 10090 Mus musculus 2.68 54.10 repository Initial release Version format compliance Version format compliance 1 0 1994-01-31 1 1 2008-03-24 1 2 2011-07-13 Y 1992-07-08 REL HOH water HOH 2 4 HOH HOH 212 L HOH 3 4 HOH HOH 213 L HOH 4 4 HOH HOH 214 L HOH 5 4 HOH HOH 215 L HOH 8 4 HOH HOH 216 L HOH 12 4 HOH HOH 217 L HOH 13 4 HOH HOH 218 L HOH 16 4 HOH HOH 219 L HOH 17 4 HOH HOH 220 L HOH 19 4 HOH HOH 221 L HOH 20 4 HOH HOH 222 L HOH 1 4 HOH HOH 229 H HOH 6 4 HOH HOH 230 H HOH 7 4 HOH HOH 231 H HOH 9 4 HOH HOH 232 H HOH 10 4 HOH HOH 233 H HOH 11 4 HOH HOH 234 H HOH 14 4 HOH HOH 235 H HOH 15 4 HOH HOH 236 H HOH 18 4 HOH HOH 237 H HOH 21 4 HOH HOH 238 H HOH 22 4 HOH HOH 239 H ASP 1 n 1 ASP 1 L ILE 2 n 2 ILE 2 L VAL 3 n 3 VAL 3 L MET 4 n 4 MET 4 L THR 5 n 5 THR 5 L GLN 6 n 6 GLN 6 L SER 7 n 7 SER 7 L PRO 8 n 8 PRO 8 L SER 9 n 9 SER 9 L SER 10 n 10 SER 10 L LEU 11 n 11 LEU 11 L THR 12 n 12 THR 12 L VAL 13 n 13 VAL 13 L THR 14 n 14 THR 14 L ALA 15 n 15 ALA 15 L GLY 16 n 16 GLY 16 L GLU 17 n 17 GLU 17 L LYS 18 n 18 LYS 18 L VAL 19 n 19 VAL 19 L THR 20 n 20 THR 20 L MET 21 n 21 MET 21 L SER 22 n 22 SER 22 L CYS 23 n 23 CYS 23 L THR 24 n 24 THR 24 L SER 25 n 25 SER 25 L SER 26 n 26 SER 26 L GLN 27 n 27 GLN 27 L SER 27 n 28 A SER 27 L LEU 27 n 29 B LEU 27 L PHE 27 n 30 C PHE 27 L ASN 27 n 31 D ASN 27 L SER 27 n 32 E SER 27 L GLY 27 n 33 F GLY 27 L LYS 28 n 34 LYS 28 L GLN 29 n 35 GLN 29 L LYS 30 n 36 LYS 30 L ASN 31 n 37 ASN 31 L TYR 32 n 38 TYR 32 L LEU 33 n 39 LEU 33 L THR 34 n 40 THR 34 L TRP 35 n 41 TRP 35 L TYR 36 n 42 TYR 36 L GLN 37 n 43 GLN 37 L GLN 38 n 44 GLN 38 L LYS 39 n 45 LYS 39 L PRO 40 n 46 PRO 40 L GLY 41 n 47 GLY 41 L GLN 42 n 48 GLN 42 L PRO 43 n 49 PRO 43 L PRO 44 n 50 PRO 44 L LYS 45 n 51 LYS 45 L VAL 46 n 52 VAL 46 L LEU 47 n 53 LEU 47 L ILE 48 n 54 ILE 48 L TYR 49 n 55 TYR 49 L TRP 50 n 56 TRP 50 L ALA 51 n 57 ALA 51 L SER 52 n 58 SER 52 L THR 53 n 59 THR 53 L ARG 54 n 60 ARG 54 L GLU 55 n 61 GLU 55 L SER 56 n 62 SER 56 L GLY 57 n 63 GLY 57 L VAL 58 n 64 VAL 58 L PRO 59 n 65 PRO 59 L ASP 60 n 66 ASP 60 L ARG 61 n 67 ARG 61 L PHE 62 n 68 PHE 62 L THR 63 n 69 THR 63 L GLY 64 n 70 GLY 64 L SER 65 n 71 SER 65 L GLY 66 n 72 GLY 66 L SER 67 n 73 SER 67 L GLY 68 n 74 GLY 68 L THR 69 n 75 THR 69 L ASP 70 n 76 ASP 70 L PHE 71 n 77 PHE 71 L THR 72 n 78 THR 72 L LEU 73 n 79 LEU 73 L THR 74 n 80 THR 74 L ILE 75 n 81 ILE 75 L SER 76 n 82 SER 76 L SER 77 n 83 SER 77 L VAL 78 n 84 VAL 78 L GLN 79 n 85 GLN 79 L ALA 80 n 86 ALA 80 L GLU 81 n 87 GLU 81 L ASP 82 n 88 ASP 82 L LEU 83 n 89 LEU 83 L ALA 84 n 90 ALA 84 L VAL 85 n 91 VAL 85 L TYR 86 n 92 TYR 86 L TYR 87 n 93 TYR 87 L CYS 88 n 94 CYS 88 L GLN 89 n 95 GLN 89 L ASN 90 n 96 ASN 90 L ASP 91 n 97 ASP 91 L TYR 92 n 98 TYR 92 L SER 93 n 99 SER 93 L ASN 94 n 100 ASN 94 L PRO 95 n 101 PRO 95 L LEU 96 n 102 LEU 96 L THR 97 n 103 THR 97 L PHE 98 n 104 PHE 98 L GLY 99 n 105 GLY 99 L GLY 100 n 106 GLY 100 L GLY 101 n 107 GLY 101 L THR 102 n 108 THR 102 L LYS 103 n 109 LYS 103 L LEU 104 n 110 LEU 104 L GLU 105 n 111 GLU 105 L LEU 106 n 112 LEU 106 L LYS 107 n 113 LYS 107 L ARG 108 n 114 ARG 108 L ALA 109 n 115 ALA 109 L ASP 110 n 116 ASP 110 L ALA 111 n 117 ALA 111 L ALA 112 n 118 ALA 112 L PRO 113 n 119 PRO 113 L THR 114 n 120 THR 114 L VAL 115 n 121 VAL 115 L SER 116 n 122 SER 116 L ILE 117 n 123 ILE 117 L PHE 118 n 124 PHE 118 L PRO 119 n 125 PRO 119 L PRO 120 n 126 PRO 120 L SER 121 n 127 SER 121 L SER 122 n 128 SER 122 L GLU 123 n 129 GLU 123 L GLN 124 n 130 GLN 124 L LEU 125 n 131 LEU 125 L THR 126 n 132 THR 126 L SER 127 n 133 SER 127 L GLY 128 n 134 GLY 128 L GLY 129 n 135 GLY 129 L ALA 130 n 136 ALA 130 L SER 131 n 137 SER 131 L VAL 132 n 138 VAL 132 L VAL 133 n 139 VAL 133 L CYS 134 n 140 CYS 134 L PHE 135 n 141 PHE 135 L LEU 136 n 142 LEU 136 L ASN 137 n 143 ASN 137 L ASN 138 n 144 ASN 138 L PHE 139 n 145 PHE 139 L TYR 140 n 146 TYR 140 L PRO 141 n 147 PRO 141 L LYS 142 n 148 LYS 142 L ASP 143 n 149 ASP 143 L ILE 144 n 150 ILE 144 L ASN 145 n 151 ASN 145 L VAL 146 n 152 VAL 146 L LYS 147 n 153 LYS 147 L TRP 148 n 154 TRP 148 L LYS 149 n 155 LYS 149 L ILE 150 n 156 ILE 150 L ASP 151 n 157 ASP 151 L GLY 152 n 158 GLY 152 L SER 153 n 159 SER 153 L GLU 154 n 160 GLU 154 L ARG 155 n 161 ARG 155 L GLN 156 n 162 GLN 156 L ASN 157 n 163 ASN 157 L GLY 158 n 164 GLY 158 L VAL 159 n 165 VAL 159 L LEU 160 n 166 LEU 160 L ASN 161 n 167 ASN 161 L SER 162 n 168 SER 162 L TRP 163 n 169 TRP 163 L THR 164 n 170 THR 164 L ASP 165 n 171 ASP 165 L GLN 166 n 172 GLN 166 L ASP 167 n 173 ASP 167 L SER 168 n 174 SER 168 L LYS 169 n 175 LYS 169 L ASP 170 n 176 ASP 170 L SER 171 n 177 SER 171 L THR 172 n 178 THR 172 L TYR 173 n 179 TYR 173 L SER 174 n 180 SER 174 L MET 175 n 181 MET 175 L SER 176 n 182 SER 176 L SER 177 n 183 SER 177 L THR 178 n 184 THR 178 L LEU 179 n 185 LEU 179 L THR 180 n 186 THR 180 L LEU 181 n 187 LEU 181 L THR 182 n 188 THR 182 L LYS 183 n 189 LYS 183 L ASP 184 n 190 ASP 184 L GLU 185 n 191 GLU 185 L TYR 186 n 192 TYR 186 L GLU 187 n 193 GLU 187 L ARG 188 n 194 ARG 188 L HIS 189 n 195 HIS 189 L ASN 190 n 196 ASN 190 L SER 191 n 197 SER 191 L TYR 192 n 198 TYR 192 L THR 193 n 199 THR 193 L CYS 194 n 200 CYS 194 L GLU 195 n 201 GLU 195 L ALA 196 n 202 ALA 196 L THR 197 n 203 THR 197 L HIS 198 n 204 HIS 198 L LYS 199 n 205 LYS 199 L THR 200 n 206 THR 200 L SER 201 n 207 SER 201 L THR 202 n 208 THR 202 L SER 203 n 209 SER 203 L PRO 204 n 210 PRO 204 L ILE 205 n 211 ILE 205 L VAL 206 n 212 VAL 206 L LYS 207 n 213 LYS 207 L SER 208 n 214 SER 208 L PHE 209 n 215 PHE 209 L ASN 210 n 216 ASN 210 L ARG 211 n 217 ARG 211 L GLU 1 n 1 GLU 1 H VAL 2 n 2 VAL 2 H GLN 3 n 3 GLN 3 H LEU 4 n 4 LEU 4 H VAL 5 n 5 VAL 5 H GLU 6 n 6 GLU 6 H SER 7 n 7 SER 7 H GLY 8 n 8 GLY 8 H GLY 9 n 9 GLY 9 H ASP 10 n 10 ASP 10 H LEU 11 n 11 LEU 11 H VAL 12 n 12 VAL 12 H LYS 13 n 13 LYS 13 H PRO 14 n 14 PRO 14 H GLY 15 n 15 GLY 15 H GLY 16 n 16 GLY 16 H SER 17 n 17 SER 17 H LEU 18 n 18 LEU 18 H LYS 19 n 19 LYS 19 H LEU 20 n 20 LEU 20 H SER 21 n 21 SER 21 H CYS 22 n 22 CYS 22 H ALA 23 n 23 ALA 23 H ALA 24 n 24 ALA 24 H SER 25 n 25 SER 25 H GLY 26 n 26 GLY 26 H PHE 27 n 27 PHE 27 H SER 28 n 28 SER 28 H PHE 29 n 29 PHE 29 H SER 30 n 30 SER 30 H SER 31 n 31 SER 31 H TYR 32 n 32 TYR 32 H GLY 33 n 33 GLY 33 H MET 34 n 34 MET 34 H SER 35 n 35 SER 35 H TRP 36 n 36 TRP 36 H VAL 37 n 37 VAL 37 H ARG 38 n 38 ARG 38 H GLN 39 n 39 GLN 39 H THR 40 n 40 THR 40 H PRO 41 n 41 PRO 41 H ASP 42 n 42 ASP 42 H LYS 43 n 43 LYS 43 H ARG 44 n 44 ARG 44 H LEU 45 n 45 LEU 45 H GLU 46 n 46 GLU 46 H TRP 47 n 47 TRP 47 H VAL 48 n 48 VAL 48 H ALA 49 n 49 ALA 49 H THR 50 n 50 THR 50 H ILE 51 n 51 ILE 51 H SER 52 n 52 SER 52 H ASN 52 n 53 A ASN 52 H GLY 53 n 54 GLY 53 H GLY 54 n 55 GLY 54 H GLY 55 n 56 GLY 55 H TYR 56 n 57 TYR 56 H THR 57 n 58 THR 57 H TYR 58 n 59 TYR 58 H TYR 59 n 60 TYR 59 H PRO 60 n 61 PRO 60 H ASP 61 n 62 ASP 61 H SER 62 n 63 SER 62 H VAL 63 n 64 VAL 63 H LYS 64 n 65 LYS 64 H GLY 65 n 66 GLY 65 H ARG 66 n 67 ARG 66 H PHE 67 n 68 PHE 67 H THR 68 n 69 THR 68 H ILE 69 n 70 ILE 69 H SER 70 n 71 SER 70 H ARG 71 n 72 ARG 71 H ASP 72 n 73 ASP 72 H ASN 73 n 74 ASN 73 H ALA 74 n 75 ALA 74 H LYS 75 n 76 LYS 75 H ASN 76 n 77 ASN 76 H THR 77 n 78 THR 77 H LEU 78 n 79 LEU 78 H TYR 79 n 80 TYR 79 H LEU 80 n 81 LEU 80 H GLN 81 n 82 GLN 81 H MET 82 n 83 MET 82 H SER 82 n 84 A SER 82 H SER 82 n 85 B SER 82 H LEU 82 n 86 C LEU 82 H LYS 83 n 87 LYS 83 H SER 84 n 88 SER 84 H GLU 85 n 89 GLU 85 H ASP 86 n 90 ASP 86 H SER 87 n 91 SER 87 H ALA 88 n 92 ALA 88 H MET 89 n 93 MET 89 H TYR 90 n 94 TYR 90 H TYR 91 n 95 TYR 91 H CYS 92 n 96 CYS 92 H ALA 93 n 97 ALA 93 H ARG 94 n 98 ARG 94 H ARG 95 n 99 ARG 95 H GLU 96 n 100 GLU 96 H ARG 97 n 101 ARG 97 H TYR 98 n 102 TYR 98 H ASP 99 n 103 ASP 99 H GLU 100 n 104 GLU 100 H ASN 100 n 105 A ASN 100 H GLY 100 n 106 B GLY 100 H PHE 100 n 107 C PHE 100 H ALA 101 n 108 ALA 101 H TYR 102 n 109 TYR 102 H TRP 103 n 110 TRP 103 H GLY 104 n 111 GLY 104 H GLN 105 n 112 GLN 105 H GLY 106 n 113 GLY 106 H THR 107 n 114 THR 107 H LEU 108 n 115 LEU 108 H VAL 109 n 116 VAL 109 H THR 110 n 117 THR 110 H VAL 111 n 118 VAL 111 H SER 112 n 119 SER 112 H ALA 113 n 120 ALA 113 H ALA 114 n 121 ALA 114 H LYS 115 n 122 LYS 115 H THR 116 n 123 THR 116 H THR 117 n 124 THR 117 H ALA 118 n 125 ALA 118 H PRO 119 n 126 PRO 119 H SER 120 n 127 SER 120 H VAL 121 n 128 VAL 121 H TYR 122 n 129 TYR 122 H PRO 123 n 130 PRO 123 H LEU 124 n 131 LEU 124 H ALA 125 n 132 ALA 125 H PRO 126 n 133 PRO 126 H VAL 127 n 134 VAL 127 H CYS 128 n 135 CYS 128 H GLY 129 n 136 GLY 129 H ASP 130 n 137 ASP 130 H THR 133 n 138 THR 133 H THR 134 n 139 THR 134 H GLY 135 n 140 GLY 135 H SER 136 n 141 SER 136 H SER 137 n 142 SER 137 H VAL 138 n 143 VAL 138 H THR 139 n 144 THR 139 H LEU 140 n 145 LEU 140 H GLY 141 n 146 GLY 141 H CYS 142 n 147 CYS 142 H LEU 143 n 148 LEU 143 H VAL 144 n 149 VAL 144 H LYS 145 n 150 LYS 145 H GLY 146 n 151 GLY 146 H TYR 147 n 152 TYR 147 H PHE 148 n 153 PHE 148 H PRO 149 n 154 PRO 149 H GLU 150 n 155 GLU 150 H PRO 151 n 156 PRO 151 H VAL 152 n 157 VAL 152 H THR 153 n 158 THR 153 H LEU 154 n 159 LEU 154 H THR 156 n 160 THR 156 H TRP 157 n 161 TRP 157 H ASN 162 n 162 ASN 162 H SER 163 n 163 SER 163 H GLY 164 n 164 GLY 164 H SER 165 n 165 SER 165 H LEU 166 n 166 LEU 166 H SER 167 n 167 SER 167 H SER 168 n 168 SER 168 H GLY 169 n 169 GLY 169 H VAL 171 n 170 VAL 171 H HIS 172 n 171 HIS 172 H THR 173 n 172 THR 173 H PHE 174 n 173 PHE 174 H PRO 175 n 174 PRO 175 H ALA 176 n 175 ALA 176 H VAL 177 n 176 VAL 177 H LEU 178 n 177 LEU 178 H GLN 179 n 178 GLN 179 H SER 180 n 179 SER 180 H ASP 183 n 180 ASP 183 H LEU 184 n 181 LEU 184 H TYR 185 n 182 TYR 185 H THR 186 n 183 THR 186 H LEU 187 n 184 LEU 187 H SER 188 n 185 SER 188 H SER 189 n 186 SER 189 H SER 190 n 187 SER 190 H VAL 191 n 188 VAL 191 H THR 192 n 189 THR 192 H VAL 193 n 190 VAL 193 H THR 194 n 191 THR 194 H SER 195 n 192 SER 195 H SER 196 n 193 SER 196 H THR 198 n 194 THR 198 H TRP 199 n 195 TRP 199 H PRO 200 n 196 PRO 200 H SER 202 n 197 SER 202 H GLN 203 n 198 GLN 203 H SER 204 n 199 SER 204 H ILE 205 n 200 ILE 205 H THR 206 n 201 THR 206 H CYS 208 n 202 CYS 208 H ASN 209 n 203 ASN 209 H VAL 210 n 204 VAL 210 H ALA 211 n 205 ALA 211 H HIS 212 n 206 HIS 212 H PRO 213 n 207 PRO 213 H ALA 214 n 208 ALA 214 H SER 215 n 209 SER 215 H SER 216 n 210 SER 216 H THR 217 n 211 THR 217 H LYS 218 n 212 LYS 218 H VAL 219 n 213 VAL 219 H ASP 220 n 214 ASP 220 H LYS 221 n 215 LYS 221 H LYS 222 n 216 LYS 222 H ILE 223 n 217 ILE 223 H GLU 226 n 218 GLU 226 H PRO 227 n 219 PRO 227 H ARG 228 n 220 ARG 228 H TYR 100 n 1 TYR 100 P ASP 101 n 2 ASP 101 P VAL 102 n 3 VAL 102 P PRO 103 n 4 PRO 103 P ASP 104 n 5 ASP 104 P TYR 105 n 6 TYR 105 P ALA 106 n 7 ALA 106 P SER 107 n 8 SER 107 P author_defined_assembly 3 trimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 L O SER 7 A O SER 7 L N SER 22 A N SER 22 L O CYS 23 A O CYS 23 L N PHE 71 A N PHE 77 L O THR 74 A O THR 80 L N THR 63 A N THR 69 L N LEU 11 A N LEU 11 L O LYS 103 A O LYS 109 L O THR 102 A O THR 108 L N TYR 86 A N TYR 92 L O GLN 89 A O GLN 95 L N THR 34 A N THR 40 L O GLN 37 A O GLN 43 L N LYS 45 A N LYS 51 L N TYR 49 A N TYR 55 L O THR 53 A O THR 59 L O PHE 118 A O PHE 124 L N VAL 133 A N VAL 139 L O PHE 139 A O PHE 145 L N TYR 173 A N TYR 179 L O THR 178 A O THR 184 L N LEU 160 A N LEU 166 L N ARG 155 A N ARG 161 L O TRP 148 A O TRP 154 L N LYS 149 A N LYS 155 L O THR 193 A O THR 199 L N ALA 196 A N ALA 202 L O ILE 205 A O ILE 211 H O SER 7 B O SER 7 H N SER 21 B N SER 21 H O CYS 22 B O CYS 22 H N LEU 78 B N LEU 79 H N GLN 81 B N GLN 82 H O THR 68 B O THR 69 H N VAL 12 B N VAL 12 H O THR 110 B O THR 117 H N VAL 109 B N VAL 116 H O ALA 88 B O ALA 92 H N ARG 95 B N ARG 99 H O GLY 33 B O GLY 33 H O ARG 38 B O ARG 38 H N GLU 46 B N GLU 46 H N LEU 124 B N LEU 131 H O GLY 141 B O GLY 146 H O TYR 147 B O TYR 152 H N TYR 185 B N TYR 182 H N SER 190 B N SER 187 H O HIS 172 B O HIS 171 H N VAL 138 B N VAL 143 H O VAL 193 B O VAL 190 H O THR 156 B O THR 160 H N ASN 209 B N ASN 203 H N HIS 212 B N HIS 206 H O THR 217 B O THR 211 1 L TYR 32 0.067 SIDE CHAIN 1 L TYR 86 0.078 SIDE CHAIN 1 H ARG 95 0.293 SIDE CHAIN 1 -9.66 1.60 100.20 90.54 L L L CG SD CE MET MET MET 4 4 4 N 1 7.15 1.10 114.20 121.35 L L L CA CB SG CYS CYS CYS 23 23 23 N 1 -9.83 1.50 110.50 100.67 L L L N CA CB SER SER SER 25 25 25 N 1 5.34 0.80 106.30 111.64 L L L CD1 CG CD2 TRP TRP TRP 35 35 35 N 1 9.56 1.50 119.30 128.86 L L L C N CA GLN PRO PRO 42 43 43 Y 1 -8.59 1.40 111.70 103.11 L L L CA N CD PRO PRO PRO 43 43 43 N 1 17.65 2.20 113.40 131.05 L L L CA CB CG LYS LYS LYS 45 45 45 N 1 7.12 0.80 106.30 113.42 L L L CD1 CG CD2 TRP TRP TRP 50 50 50 N 1 -7.07 1.00 110.10 103.03 L L L CG CD1 NE1 TRP TRP TRP 50 50 50 N 1 -6.30 0.80 107.30 101.00 L L L CE2 CD2 CG TRP TRP TRP 50 50 50 N 1 -9.88 1.50 110.50 100.62 L L L N CA CB SER SER SER 52 52 52 N 1 -13.41 1.90 110.30 96.89 L L L N CA CB THR THR THR 69 69 69 N 1 17.24 2.30 115.30 132.54 L L L CA CB CG LEU LEU LEU 106 106 106 N 1 8.49 1.10 114.20 122.69 L L L CA CB SG CYS CYS CYS 134 134 134 N 1 -13.87 2.30 121.90 108.03 L L L OD1 CG ND2 ASN ASN ASN 145 145 145 N 1 16.10 2.40 116.70 132.80 L L L CB CG ND2 ASN ASN ASN 145 145 145 N 1 6.74 0.80 106.30 113.04 L L L CD1 CG CD2 TRP TRP TRP 148 148 148 N 1 -6.34 0.80 107.30 100.96 L L L CE2 CD2 CG TRP TRP TRP 148 148 148 N 1 6.14 0.80 106.30 112.44 L L L CD1 CG CD2 TRP TRP TRP 163 163 163 N 1 -3.78 0.60 121.00 117.22 L L L CB CG CD1 TYR TYR TYR 173 173 173 N 1 -14.12 1.60 100.20 86.08 L L L CG SD CE MET MET MET 175 175 175 N 1 -3.97 0.60 121.00 117.03 L L L CB CG CD1 TYR TYR TYR 192 192 192 N 1 9.89 1.10 114.20 124.09 L L L CA CB SG CYS CYS CYS 194 194 194 N 1 16.97 2.70 111.20 128.17 L L L CA CB OG SER SER SER 208 208 208 N 1 6.41 0.50 120.30 126.71 L L L NE CZ NH1 ARG ARG ARG 211 211 211 N 1 -3.75 0.50 120.30 116.55 L L L NE CZ NH2 ARG ARG ARG 211 211 211 N 1 4.08 0.60 121.00 125.08 H H H CB CG CD2 TYR TYR TYR 32 32 32 N 1 -5.85 0.60 121.00 115.15 H H H CB CG CD1 TYR TYR TYR 32 32 32 N 1 -9.96 1.60 100.20 90.24 H H H CG SD CE MET MET MET 34 34 34 N 1 5.29 0.80 106.30 111.59 H H H CD1 CG CD2 TRP TRP TRP 36 36 36 N 1 -3.49 0.50 120.30 116.81 H H H NE CZ NH2 ARG ARG ARG 44 44 44 N 1 5.96 0.80 106.30 112.26 H H H CD1 CG CD2 TRP TRP TRP 47 47 47 N 1 -5.31 0.80 107.30 101.99 H H H CE2 CD2 CG TRP TRP TRP 47 47 47 N 1 -5.54 0.60 121.00 115.46 H H H CB CG CD1 TYR TYR TYR 59 59 59 N 1 -3.21 0.50 120.30 117.09 H H H NE CZ NH2 ARG ARG ARG 71 71 71 N 1 -4.13 0.60 121.00 116.87 H H H CB CG CD1 TYR TYR TYR 91 91 91 N 1 -3.80 0.50 120.30 116.50 H H H NE CZ NH1 ARG ARG ARG 94 94 94 N 1 -12.26 1.40 123.60 111.34 H H H CD NE CZ ARG ARG ARG 95 95 95 N 1 -7.38 1.10 119.40 112.02 H H H NH1 CZ NH2 ARG ARG ARG 95 95 95 N 1 6.24 0.50 120.30 126.54 H H H NE CZ NH1 ARG ARG ARG 97 97 97 N 1 -3.96 0.50 120.30 116.34 H H H NE CZ NH2 ARG ARG ARG 97 97 97 N 1 -5.94 0.60 121.00 115.06 H H H CB CG CD2 TYR TYR TYR 102 102 102 N 1 5.55 0.80 106.30 111.85 H H H CD1 CG CD2 TRP TRP TRP 103 103 103 N 1 -4.90 0.80 107.30 102.40 H H H CE2 CD2 CG TRP TRP TRP 103 103 103 N 1 -5.07 0.60 121.00 115.93 H H H CB CG CD2 TYR TYR TYR 122 122 122 N 1 -13.56 2.20 117.20 103.64 H H H CA C N VAL VAL CYS 127 127 128 Y 1 11.19 1.10 114.20 125.39 H H H CA CB SG CYS CYS CYS 142 142 142 N 1 7.81 0.80 106.30 114.11 H H H CD1 CG CD2 TRP TRP TRP 157 157 157 N 1 -6.34 1.00 110.10 103.76 H H H CG CD1 NE1 TRP TRP TRP 157 157 157 N 1 -6.15 0.80 107.30 101.15 H H H CE2 CD2 CG TRP TRP TRP 157 157 157 N 1 18.32 2.30 115.30 133.62 H H H CA CB CG LEU LEU LEU 178 178 178 N 1 15.36 2.20 113.40 128.76 H H H CA CB CG GLN GLN GLN 179 179 179 N 1 6.96 0.80 106.30 113.26 H H H CD1 CG CD2 TRP TRP TRP 199 199 199 N 1 -5.88 0.80 107.30 101.42 H H H CE2 CD2 CG TRP TRP TRP 199 199 199 N 1 16.25 2.20 113.40 129.65 H H H CA CB CG ARG ARG ARG 228 228 228 N 1 3.93 0.50 120.30 124.23 H H H NE CZ NH1 ARG ARG ARG 228 228 228 N 1 -15.97 2.20 113.40 97.43 P P P CA CB CG ASP ASP ASP 101 101 101 N 1 -9.84 0.90 118.30 108.46 P P P CB CG OD1 ASP ASP ASP 101 101 101 N 1 8.78 0.90 118.30 127.08 P P P CB CG OD2 ASP ASP ASP 101 101 101 N 1 L L NE2 CD2 HIS HIS 189 189 -0.074 0.011 1.373 1.299 N 1 H H CD OE2 GLU GLU 100 100 -0.076 0.011 1.252 1.176 N 1 H H NE2 CD2 HIS HIS 212 212 -0.076 0.011 1.373 1.297 N 1 L THR 14 -88.10 -148.39 1 L GLN 29 95.46 45.62 1 L LEU 47 -98.40 -80.89 1 L ALA 51 70.19 -38.61 1 L ASP 60 -48.91 -6.52 1 L PRO 141 -66.22 -172.93 1 L ASP 143 -66.97 99.74 1 L GLN 156 -132.80 -46.08 1 L ARG 188 -91.35 30.81 1 L ASN 190 -133.44 -71.20 1 L SER 201 -54.00 94.95 1 L PHE 209 -108.52 -141.51 1 L ASN 210 170.19 129.20 1 H SER 30 -43.48 -18.47 1 H ALA 49 -170.78 148.06 1 H TYR 56 -49.54 103.51 B 1 H SER 82 47.48 79.21 1 H GLU 100 79.62 85.49 A 1 H ASN 100 -166.59 44.44 1 H GLN 105 -110.16 53.72 1 H CYS 128 28.49 93.68 1 H THR 133 -82.10 -91.46 1 H SER 137 -115.26 -169.56 1 H PRO 149 -78.97 -99.12 1 H ASN 162 39.86 53.08 1 H GLN 179 -77.83 -126.37 1 H SER 180 -53.23 71.16 1 H ASP 183 34.17 25.61 1 H SER 195 9.26 -96.56 1 H SER 196 -22.64 -41.33 1 H PRO 227 -79.23 -86.77 0.22 0.22 3.1 8.0 1 2.0 3.1 8.0 22 3432 0 0 3410 0.019 3.9 model building X-PLOR refinement X-PLOR phasing X-PLOR IGG2A FAB FRAGMENT (FAB 17/9) COMPLEXED WITH PEPTIDE OF INFLUENZA HEMAGGLUTININ HA1 (STRAIN X47) (RESIDUES 100-107) STRUCTURAL EVIDENCE FOR INDUCED FIT AS A MECHANISM FOR ANTIBODY-ANTIGEN RECOGNITION 1 N N 2 N N 3 N N 4 N N 4 N N L GLN 79 A GLN 85 HELX_P L LEU 83 A LEU 89 5 1 5 L SER 121 A SER 127 HELX_P L THR 126 A THR 132 1 2 6 L LYS 183 A LYS 189 HELX_P L ARG 188 A ARG 194 1 3 6 H SER 28 B SER 28 HELX_P H TYR 32 B TYR 32 5 4 5 H LYS 83 B LYS 87 HELX_P H SER 87 B SER 91 5 5 5 H SER 163 B SER 163 HELX_P H SER 165 B SER 165 5 6 3 H SER 196 B SER 193 HELX_P H GLN 203 B GLN 198 1 7 6 disulf 2.017 L CYS 23 A SG CYS 23 1_555 L CYS 88 A SG CYS 94 1_555 disulf 2.007 L CYS 134 A SG CYS 140 1_555 L CYS 194 A SG CYS 200 1_555 disulf 2.017 H CYS 22 B SG CYS 22 1_555 H CYS 92 B SG CYS 96 1_555 disulf 2.028 H CYS 142 B SG CYS 147 1_555 H CYS 208 B SG CYS 202 1_555 IMMUNOGLOBULIN IMMUNOGLOBULIN L SER 7 A SER 7 1 L PRO 8 A PRO 8 -2.73 L ASN 94 A ASN 100 1 L PRO 95 A PRO 101 1.03 L TYR 140 A TYR 146 1 L PRO 141 A PRO 147 0.95 H PHE 148 B PHE 153 1 H PRO 149 B PRO 154 -0.05 H GLU 150 B GLU 155 1 H PRO 151 B PRO 156 -2.79 H TRP 199 B TRP 195 1 H PRO 200 B PRO 196 0.45 A31790 PIR 1 1 A31790 DIVMTQSPSSLTVTAGEKVTMSCTSSQSLFNSGKQKNYLTWYQQKPGQPPKVLIYWASTRESGVPDRFTGSGSGTDFTLT ISSVQAEDLAVYYCQNDYSNPLTFGGGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC AAA38230 GB 2 1 533229 EVQLVESGGDLVKPGGSLKLSCAASGFSFSSYGMSWVRQTPDKRLEWVATISNGGGYTYYPDSVKGRFTISRDNAKNTLY LQMSSLKSEDSAMYYCARRERYDENGFAYWGQGTLVTVSAAKTTAPSVYPLAPVCGDXXTTGSSVTLGCLVKGYFPEPVT LXTWXXXXNSGSLSSGXVHTFPAVLQSXXDLYTLSSSVTVTSSXTWPXSQSITXCNVAHPASSTKVDKKIXXERGPTIXX KPCPPCKCPAPNLLG 1HIN PDB 3 1HIN 1 217 1HIN 1 211 A31790 L 1 1 217 1 219 1HIN 1 228 533229 H 2 1 220 100 107 1HIN 100 107 1HIN P 3 1 8 2 INSERTION PRO 227 1HIN H 533229 GB 219 4 5 2 2 4 4 4 5 4 2 3 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel L THR 5 A THR 5 L SER 7 A SER 7 L VAL 19 A VAL 19 L THR 24 A THR 24 L ASP 70 A ASP 76 L ILE 75 A ILE 81 L PHE 62 A PHE 68 L SER 67 A SER 73 L SER 10 A SER 10 L VAL 13 A VAL 13 L THR 102 A THR 108 L LEU 106 A LEU 112 L VAL 85 A VAL 91 L ASN 90 A ASN 96 L LEU 33 A LEU 39 L GLN 38 A GLN 44 L LYS 45 A LYS 51 L VAL 46 A VAL 52 L LYS 30 A LYS 36 L ASN 31 A ASN 37 L ILE 48 A ILE 54 L TYR 49 A TYR 55 L THR 53 A THR 59 L ARG 54 A ARG 60 L THR 114 A THR 120 L PHE 118 A PHE 124 L GLY 129 A GLY 135 L PHE 139 A PHE 145 L TYR 173 A TYR 179 L THR 182 A THR 188 L VAL 159 A VAL 165 L TRP 163 A TRP 169 L SER 153 A SER 159 L ARG 155 A ARG 161 L LYS 147 A LYS 153 L ILE 150 A ILE 156 L SER 191 A SER 197 L ALA 196 A ALA 202 L ILE 205 A ILE 211 L ASN 210 A ASN 216 H GLN 3 B GLN 3 H SER 7 B SER 7 H LEU 18 B LEU 18 H SER 25 B SER 25 H THR 77 B THR 78 H MET 82 B MET 83 H THR 68 B THR 69 H SER 70 B SER 71 H LEU 11 B LEU 11 H VAL 12 B VAL 12 H THR 107 B THR 114 H VAL 111 B VAL 118 H ALA 88 B ALA 92 H ARG 95 B ARG 99 H GLY 33 B GLY 33 H GLN 39 B GLN 39 H LEU 45 B LEU 45 H THR 50 B THR 50 H SER 120 B SER 127 H LEU 124 B LEU 131 H GLY 141 B GLY 146 H TYR 147 B TYR 152 H TYR 185 B TYR 182 H SER 190 B SER 187 H HIS 172 B HIS 171 H LEU 178 B LEU 177 H VAL 138 B VAL 143 H THR 139 B THR 144 H THR 192 B THR 189 H VAL 193 B VAL 190 H THR 153 B THR 158 H TRP 157 B TRP 161 H THR 206 B THR 201 H HIS 212 B HIS 206 H THR 217 B THR 211 H LYS 222 B LYS 216 4 P 1 21 1