0.015515 0.000000 0.004543 0.000000 0.033963 0.000000 0.000000 0.000000 0.029495 0.00000 0.00000 0.00000 Brucker, E.A. Phillips Jr., G.N. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 106.32 90.00 64.453 29.444 35.328 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C34 H32 Fe N4 O4 616.487 PROTOPORPHYRIN IX CONTAINING FE HEME non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking N O 30.006 NITRIC OXIDE Nitrogen monoxide non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proteins PSFGEY 0867 0887-3585 30 352 356 10.1002/(SICI)1097-0134(19980301)30:4<352::AID-PROT2>3.3.CO;2-G 9533619 Nitric oxide myoglobin: crystal structure and analysis of ligand geometry. 1998 10.2210/pdb1hjt/pdb pdb_00001hjt 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 295 1 IMAGE PLATE 1997-03-10 RIGAKU M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE SIEMENS 17234.951 MYOGLOBIN 1 nat polymer 96.063 SULFATE ION 1 syn non-polymer 616.487 PROTOPORPHYRIN IX CONTAINING FE 1 syn non-polymer 30.006 NITRIC OXIDE 1 syn non-polymer 18.015 water 106 nat water no no VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKG HHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGYQG VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKG HHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGYQG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sperm whale Physeter sample 9755 Physeter catodon MUSCLE 1 1.87 34.09 database_2 pdbx_database_status pdbx_initial_refinement_model struct_conn struct_site repository Initial release Version format compliance Version format compliance Database references Derived calculations Other Refinement description 1 0 1997-11-12 1 1 2008-03-24 1 2 2011-07-13 1 3 2023-08-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1997-06-24 REL REL SO4 SULFATE ION HEM PROTOPORPHYRIN IX CONTAINING FE NO NITRIC OXIDE HOH water 1YOI PDB ENTRY 1YOI PDB experimental model SO4 200 2 SO4 SO4 200 A HEM 160 3 HEM HEM 160 A NMO 170 4 NO NO 170 A HOH 1001 5 HOH HOH 1001 A HOH 1002 5 HOH HOH 1002 A HOH 1003 5 HOH HOH 1003 A HOH 1004 5 HOH HOH 1004 A HOH 1005 5 HOH HOH 1005 A HOH 1006 5 HOH HOH 1006 A HOH 1007 5 HOH HOH 1007 A HOH 1008 5 HOH HOH 1008 A HOH 1009 5 HOH HOH 1009 A HOH 1010 5 HOH HOH 1010 A HOH 1011 5 HOH HOH 1011 A HOH 1012 5 HOH HOH 1012 A HOH 1013 5 HOH HOH 1013 A HOH 1014 5 HOH HOH 1014 A HOH 1015 5 HOH HOH 1015 A HOH 1016 5 HOH HOH 1016 A HOH 1017 5 HOH HOH 1017 A HOH 1018 5 HOH HOH 1018 A HOH 1019 5 HOH HOH 1019 A HOH 1020 5 HOH HOH 1020 A HOH 1021 5 HOH HOH 1021 A HOH 1022 5 HOH HOH 1022 A HOH 1023 5 HOH HOH 1023 A HOH 1024 5 HOH HOH 1024 A HOH 1025 5 HOH HOH 1025 A HOH 1026 5 HOH HOH 1026 A HOH 1027 5 HOH HOH 1027 A HOH 1028 5 HOH HOH 1028 A HOH 1029 5 HOH HOH 1029 A HOH 1030 5 HOH HOH 1030 A HOH 1031 5 HOH HOH 1031 A HOH 1032 5 HOH HOH 1032 A HOH 1033 5 HOH HOH 1033 A HOH 1034 5 HOH HOH 1034 A HOH 1035 5 HOH HOH 1035 A HOH 1036 5 HOH HOH 1036 A HOH 1037 5 HOH HOH 1037 A HOH 1038 5 HOH HOH 1038 A HOH 1039 5 HOH HOH 1039 A HOH 1040 5 HOH HOH 1040 A HOH 1041 5 HOH HOH 1041 A HOH 1042 5 HOH HOH 1042 A HOH 1043 5 HOH HOH 1043 A HOH 1044 5 HOH HOH 1044 A HOH 1045 5 HOH HOH 1045 A HOH 1046 5 HOH HOH 1046 A HOH 1047 5 HOH HOH 1047 A HOH 1048 5 HOH HOH 1048 A HOH 1049 5 HOH HOH 1049 A HOH 1050 5 HOH HOH 1050 A HOH 1051 5 HOH HOH 1051 A HOH 1052 5 HOH HOH 1052 A HOH 1053 5 HOH HOH 1053 A HOH 1054 5 HOH HOH 1054 A HOH 1055 5 HOH HOH 1055 A HOH 1056 5 HOH HOH 1056 A HOH 1057 5 HOH HOH 1057 A HOH 1058 5 HOH HOH 1058 A HOH 1059 5 HOH HOH 1059 A HOH 1060 5 HOH HOH 1060 A HOH 1061 5 HOH HOH 1061 A HOH 1062 5 HOH HOH 1062 A HOH 1063 5 HOH HOH 1063 A HOH 1064 5 HOH HOH 1064 A HOH 1065 5 HOH HOH 1065 A HOH 1066 5 HOH HOH 1066 A HOH 1067 5 HOH HOH 1067 A HOH 1068 5 HOH HOH 1068 A HOH 1069 5 HOH HOH 1069 A HOH 1070 5 HOH HOH 1070 A HOH 1071 5 HOH HOH 1071 A HOH 1072 5 HOH HOH 1072 A HOH 1073 5 HOH HOH 1073 A HOH 1074 5 HOH HOH 1074 A HOH 1075 5 HOH HOH 1075 A HOH 1076 5 HOH HOH 1076 A HOH 1077 5 HOH HOH 1077 A HOH 1078 5 HOH HOH 1078 A HOH 1079 5 HOH HOH 1079 A HOH 1080 5 HOH HOH 1080 A HOH 1081 5 HOH HOH 1081 A HOH 1082 5 HOH HOH 1082 A HOH 1084 5 HOH HOH 1084 A HOH 1085 5 HOH HOH 1085 A HOH 1086 5 HOH HOH 1086 A HOH 1087 5 HOH HOH 1087 A HOH 1088 5 HOH HOH 1088 A HOH 1089 5 HOH HOH 1089 A HOH 1090 5 HOH HOH 1090 A HOH 1091 5 HOH HOH 1091 A HOH 1092 5 HOH HOH 1092 A HOH 1093 5 HOH HOH 1093 A HOH 1094 5 HOH HOH 1094 A HOH 1095 5 HOH HOH 1095 A HOH 1096 5 HOH HOH 1096 A HOH 1097 5 HOH HOH 1097 A HOH 1098 5 HOH HOH 1098 A HOH 1099 5 HOH HOH 1099 A HOH 1100 5 HOH HOH 1100 A HOH 1101 5 HOH HOH 1101 A HOH 1102 5 HOH HOH 1102 A HOH 1103 5 HOH HOH 1103 A HOH 1104 5 HOH HOH 1104 A HOH 1105 5 HOH HOH 1105 A HOH 1106 5 HOH HOH 1106 A HOH 1107 5 HOH HOH 1107 A VAL 1 n 1 VAL 1 A LEU 2 n 2 LEU 2 A SER 3 n 3 SER 3 A GLU 4 n 4 GLU 4 A GLY 5 n 5 GLY 5 A GLU 6 n 6 GLU 6 A TRP 7 n 7 TRP 7 A GLN 8 n 8 GLN 8 A LEU 9 n 9 LEU 9 A VAL 10 n 10 VAL 10 A LEU 11 n 11 LEU 11 A HIS 12 n 12 HIS 12 A VAL 13 n 13 VAL 13 A TRP 14 n 14 TRP 14 A ALA 15 n 15 ALA 15 A LYS 16 n 16 LYS 16 A VAL 17 n 17 VAL 17 A GLU 18 n 18 GLU 18 A ALA 19 n 19 ALA 19 A ASP 20 n 20 ASP 20 A VAL 21 n 21 VAL 21 A ALA 22 n 22 ALA 22 A GLY 23 n 23 GLY 23 A HIS 24 n 24 HIS 24 A GLY 25 n 25 GLY 25 A GLN 26 n 26 GLN 26 A ASP 27 n 27 ASP 27 A ILE 28 n 28 ILE 28 A LEU 29 n 29 LEU 29 A ILE 30 n 30 ILE 30 A ARG 31 n 31 ARG 31 A LEU 32 n 32 LEU 32 A PHE 33 n 33 PHE 33 A LYS 34 n 34 LYS 34 A SER 35 n 35 SER 35 A HIS 36 n 36 HIS 36 A PRO 37 n 37 PRO 37 A GLU 38 n 38 GLU 38 A THR 39 n 39 THR 39 A LEU 40 n 40 LEU 40 A GLU 41 n 41 GLU 41 A LYS 42 n 42 LYS 42 A PHE 43 n 43 PHE 43 A ASP 44 n 44 ASP 44 A ARG 45 n 45 ARG 45 A PHE 46 n 46 PHE 46 A LYS 47 n 47 LYS 47 A HIS 48 n 48 HIS 48 A LEU 49 n 49 LEU 49 A LYS 50 n 50 LYS 50 A THR 51 n 51 THR 51 A GLU 52 n 52 GLU 52 A ALA 53 n 53 ALA 53 A GLU 54 n 54 GLU 54 A MET 55 n 55 MET 55 A LYS 56 n 56 LYS 56 A ALA 57 n 57 ALA 57 A SER 58 n 58 SER 58 A GLU 59 n 59 GLU 59 A ASP 60 n 60 ASP 60 A LEU 61 n 61 LEU 61 A LYS 62 n 62 LYS 62 A LYS 63 n 63 LYS 63 A HIS 64 n 64 HIS 64 A GLY 65 n 65 GLY 65 A VAL 66 n 66 VAL 66 A THR 67 n 67 THR 67 A VAL 68 n 68 VAL 68 A LEU 69 n 69 LEU 69 A THR 70 n 70 THR 70 A ALA 71 n 71 ALA 71 A LEU 72 n 72 LEU 72 A GLY 73 n 73 GLY 73 A ALA 74 n 74 ALA 74 A ILE 75 n 75 ILE 75 A LEU 76 n 76 LEU 76 A LYS 77 n 77 LYS 77 A LYS 78 n 78 LYS 78 A LYS 79 n 79 LYS 79 A GLY 80 n 80 GLY 80 A HIS 81 n 81 HIS 81 A HIS 82 n 82 HIS 82 A GLU 83 n 83 GLU 83 A ALA 84 n 84 ALA 84 A GLU 85 n 85 GLU 85 A LEU 86 n 86 LEU 86 A LYS 87 n 87 LYS 87 A PRO 88 n 88 PRO 88 A LEU 89 n 89 LEU 89 A ALA 90 n 90 ALA 90 A GLN 91 n 91 GLN 91 A SER 92 n 92 SER 92 A HIS 93 n 93 HIS 93 A ALA 94 n 94 ALA 94 A THR 95 n 95 THR 95 A LYS 96 n 96 LYS 96 A HIS 97 n 97 HIS 97 A LYS 98 n 98 LYS 98 A ILE 99 n 99 ILE 99 A PRO 100 n 100 PRO 100 A ILE 101 n 101 ILE 101 A LYS 102 n 102 LYS 102 A TYR 103 n 103 TYR 103 A LEU 104 n 104 LEU 104 A GLU 105 n 105 GLU 105 A PHE 106 n 106 PHE 106 A ILE 107 n 107 ILE 107 A SER 108 n 108 SER 108 A GLU 109 n 109 GLU 109 A ALA 110 n 110 ALA 110 A ILE 111 n 111 ILE 111 A ILE 112 n 112 ILE 112 A HIS 113 n 113 HIS 113 A VAL 114 n 114 VAL 114 A LEU 115 n 115 LEU 115 A HIS 116 n 116 HIS 116 A SER 117 n 117 SER 117 A ARG 118 n 118 ARG 118 A HIS 119 n 119 HIS 119 A PRO 120 n 120 PRO 120 A GLY 121 n 121 GLY 121 A ASP 122 n 122 ASP 122 A PHE 123 n 123 PHE 123 A GLY 124 n 124 GLY 124 A ALA 125 n 125 ALA 125 A ASP 126 n 126 ASP 126 A ALA 127 n 127 ALA 127 A GLN 128 n 128 GLN 128 A GLY 129 n 129 GLY 129 A ALA 130 n 130 ALA 130 A MET 131 n 131 MET 131 A ASN 132 n 132 ASN 132 A LYS 133 n 133 LYS 133 A ALA 134 n 134 ALA 134 A LEU 135 n 135 LEU 135 A GLU 136 n 136 GLU 136 A LEU 137 n 137 LEU 137 A PHE 138 n 138 PHE 138 A ARG 139 n 139 ARG 139 A LYS 140 n 140 LYS 140 A ASP 141 n 141 ASP 141 A ILE 142 n 142 ILE 142 A ALA 143 n 143 ALA 143 A ALA 144 n 144 ALA 144 A LYS 145 n 145 LYS 145 A TYR 146 n 146 TYR 146 A LYS 147 n 147 LYS 147 A GLU 148 n 148 GLU 148 A LEU 149 n 149 LEU 149 A GLY 150 n 150 GLY 150 A TYR 151 n 151 TYR 151 A GLN 152 n 152 GLN 152 A GLY 153 n 153 GLY 153 A 0.1513000 0.1663000 0.1466000 0.1617000 0.2330000 0.2515000 962 1094 10.1 10.0 9552 author_defined_assembly 1 monomeric A HIS 93 A NE2 HIS 93 1_555 A HEM 160 C FE HEM 1_555 A HEM 160 C NA HEM 1_555 90.0 A HIS 93 A NE2 HIS 93 1_555 A HEM 160 C FE HEM 1_555 A HEM 160 C NB HEM 1_555 87.5 A HEM 160 C NA HEM 1_555 A HEM 160 C FE HEM 1_555 A HEM 160 C NB HEM 1_555 89.1 A HIS 93 A NE2 HIS 93 1_555 A HEM 160 C FE HEM 1_555 A HEM 160 C NC HEM 1_555 88.5 A HEM 160 C NA HEM 1_555 A HEM 160 C FE HEM 1_555 A HEM 160 C NC HEM 1_555 177.0 A HEM 160 C NB HEM 1_555 A HEM 160 C FE HEM 1_555 A HEM 160 C NC HEM 1_555 88.3 A HIS 93 A NE2 HIS 93 1_555 A HEM 160 C FE HEM 1_555 A HEM 160 C ND HEM 1_555 90.0 A HEM 160 C NA HEM 1_555 A HEM 160 C FE HEM 1_555 A HEM 160 C ND HEM 1_555 91.8 A HEM 160 C NB HEM 1_555 A HEM 160 C FE HEM 1_555 A HEM 160 C ND HEM 1_555 177.3 A HEM 160 C NC HEM 1_555 A HEM 160 C FE HEM 1_555 A HEM 160 C ND HEM 1_555 90.8 A HIS 93 A NE2 HIS 93 1_555 A HEM 160 C FE HEM 1_555 A NO 170 D N NO 1_555 176.8 A HEM 160 C NA HEM 1_555 A HEM 160 C FE HEM 1_555 A NO 170 D N NO 1_555 89.8 A HEM 160 C NB HEM 1_555 A HEM 160 C FE HEM 1_555 A NO 170 D N NO 1_555 95.7 A HEM 160 C NC HEM 1_555 A HEM 160 C FE HEM 1_555 A NO 170 D N NO 1_555 91.8 A HEM 160 C ND HEM 1_555 A HEM 160 C FE HEM 1_555 A NO 170 D N NO 1_555 86.9 A HIS 93 A NE2 HIS 93 1_555 A HEM 160 C FE HEM 1_555 A NO 170 D O NO 1_555 156.6 A HEM 160 C NA HEM 1_555 A HEM 160 C FE HEM 1_555 A NO 170 D O NO 1_555 111.7 A HEM 160 C NB HEM 1_555 A HEM 160 C FE HEM 1_555 A NO 170 D O NO 1_555 84.4 A HEM 160 C NC HEM 1_555 A HEM 160 C FE HEM 1_555 A NO 170 D O NO 1_555 69.4 A HEM 160 C ND HEM 1_555 A HEM 160 C FE HEM 1_555 A NO 170 D O NO 1_555 97.6 A NO 170 D N NO 1_555 A HEM 160 C FE HEM 1_555 A NO 170 D O NO 1_555 24.9 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A ASP 20 -157.08 77.41 0.2515000 0.1663000 0.1617000 1.70 5.00 5499 1094 10947 5369 10.0 79.9 1 FREE R DIFFERENCE FOURIER PDB ENTRY 1YOI ENGH AND HUBER MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228 0 0.00 1352.4 1.70 5.00 106 1373 50 0 1217 0.005 0.017 0.004 0.015 0.042 0.041 0.006 0.000 0.105 0.000 1.7 30.0 1HJT 11674 0.0440000 1 32.7 3.1 80.1 0.2440000 1.70 1.80 6.4 2.5 73.1 model building SHELXL-96 model building X-PLOR 3.851 refinement SHELXL-96 refinement X-PLOR 3.851 data reduction XDS data scaling XSCALE phasing SHELXL-96 phasing X-PLOR 3.851 SPERM WHALE MYOGLOBIN (FERROUS, NITRIC OXIDE BOUND) 1 N N 2 N N 3 N N 4 N N 5 N N A GLU 4 A GLU 4 HELX_P A ALA 19 A ALA 19 1 1 16 A VAL 21 A VAL 21 HELX_P A SER 35 A SER 35 1 2 15 A PRO 37 A PRO 37 HELX_P A LYS 42 A LYS 42 1 3 6 A GLU 52 A GLU 52 HELX_P A ALA 57 A ALA 57 1 4 6 A GLU 59 A GLU 59 HELX_P A LYS 78 A LYS 78 1 5 20 A GLU 83 A GLU 83 HELX_P A THR 95 A THR 95 1 6 13 A ILE 101 A ILE 101 HELX_P A ARG 118 A ARG 118 1 7 18 A ALA 125 A ALA 125 HELX_P A LEU 149 A LEU 149 1 8 25 metalc 2.179 A HIS 93 A NE2 HIS 93 1_555 A HEM 160 C FE HEM 1_555 metalc 1.889 A HEM 160 C FE HEM 1_555 A NO 170 D N NO 1_555 metalc 2.551 A HEM 160 C FE HEM 1_555 A NO 170 D O NO 1_555 OXYGEN TRANSPORT GLOBIN, HEME, OXYGEN STORAGE, NITRIC OXIDE, OXYGEN TRANSPORT MYG_PHYCA UNP 1 1 P02185 VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKG HHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGYQG 1 153 1HJT 1 153 P02185 A 1 1 153 BINDING SITE FOR RESIDUE SO4 A 200 A SO4 200 Software 7 BINDING SITE FOR RESIDUE HEM A 160 A HEM 160 Software 20 BINDING SITE FOR RESIDUE NO A 170 A NO 170 Software 3 A SER 58 A SER 58 7 1_555 A GLU 59 A GLU 59 7 1_555 A ASP 60 A ASP 60 7 1_555 A HOH 1032 E HOH 7 1_555 A HOH 1033 E HOH 7 1_555 A HOH 1046 E HOH 7 1_555 A HOH 1048 E HOH 7 1_555 A THR 39 A THR 39 20 1_555 A LYS 42 A LYS 42 20 1_555 A PHE 43 A PHE 43 20 1_555 A ARG 45 A ARG 45 20 1_555 A HIS 64 A HIS 64 20 1_555 A VAL 68 A VAL 68 20 1_555 A SER 92 A SER 92 20 1_555 A HIS 93 A HIS 93 20 1_555 A HIS 97 A HIS 97 20 1_555 A ILE 99 A ILE 99 20 1_555 A TYR 103 A TYR 103 20 1_555 A HIS 113 A HIS 113 20 1_565 A HIS 116 A HIS 116 20 1_565 A GLN 128 A GLN 128 20 1_565 A NO 170 D NO 20 1_555 A HOH 1034 E HOH 20 1_555 A HOH 1035 E HOH 20 1_555 A HOH 1037 E HOH 20 1_555 A HOH 1038 E HOH 20 1_555 A HOH 1081 E HOH 20 1_555 A HIS 64 A HIS 64 3 1_555 A VAL 68 A VAL 68 3 1_555 A HEM 160 C HEM 3 1_555 4 P 1 21 1