0.011994
0.006925
0.000000
0.000000
0.013850
0.000000
0.000000
0.000000
0.007193
0.00000
0.00000
0.00000
Tanaka, Y.
Nureki, O.
Kurumizaka, H.
Fukai, S.
Kawaguchi, S.
Ikuta, M.
Iwahara, J.
Okazaki, T.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90
90
120
83.374
83.374
139.021
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
N
N
284
S
C
N
285
N
C
N
286
N
O
N
287
S
C
N
288
N
C
N
289
N
C
N
290
N
C
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
N
C
N
310
N
C
N
311
N
C
N
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
C
N
335
N
N
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
N
357
N
C
N
358
N
S
N
359
N
C
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
N
383
N
O
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
N
N
396
S
C
N
397
N
C
N
398
N
O
N
399
N
C
N
400
N
C
N
401
N
C
N
402
N
O
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
N
N
413
S
C
N
414
N
C
N
415
N
O
N
416
N
C
N
417
N
O
N
418
N
O
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
N
N
427
S
C
N
428
N
C
N
429
N
O
N
430
R
C
N
431
N
O
N
432
N
C
N
433
N
O
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
N
N
444
S
C
N
445
N
C
N
446
N
O
N
447
N
C
Y
448
N
C
Y
449
N
C
Y
450
N
C
Y
451
N
N
Y
452
N
C
Y
453
N
C
Y
454
N
C
Y
455
N
C
Y
456
N
C
N
457
N
O
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
N
N
471
S
C
N
472
N
C
N
473
N
O
N
474
N
C
Y
475
N
C
Y
476
N
C
Y
477
N
C
Y
478
N
C
Y
479
N
C
Y
480
N
C
N
481
N
O
N
482
N
O
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
N
N
495
S
C
N
496
N
C
N
497
N
O
N
498
N
C
N
499
N
C
N
500
N
C
N
501
N
O
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
Y
376
N
doub
Y
377
N
sing
Y
378
N
sing
N
379
N
sing
Y
380
N
doub
N
381
N
sing
Y
382
N
doub
N
383
N
sing
Y
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
doub
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
doub
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
doub
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
Y
445
N
doub
Y
446
N
sing
Y
447
N
sing
N
448
N
sing
Y
449
N
doub
Y
450
N
sing
Y
451
N
sing
N
452
N
sing
Y
453
N
sing
Y
454
N
doub
N
455
N
sing
Y
456
N
doub
N
457
N
sing
Y
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
doub
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
Y
473
N
doub
Y
474
N
sing
Y
475
N
sing
N
476
N
sing
Y
477
N
doub
N
478
N
sing
Y
479
N
doub
N
480
N
sing
Y
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
doub
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
UK
EMBO J.
EMJODG
0897
0261-4189
20
6612
6618
10.1093/emboj/20.23.6612
11726497
Crystal structure of the CENP-B protein-DNA complex: the DNA-binding domains of CENP-B induce kinks in the CENP-B box DNA.
2001
10.2210/pdb1hlv/pdb
pdb_00001hlv
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
1999-12-10
MARRESEARCH
Si 111
SINGLE WAVELENGTH
M
x-ray
1
1.000
1.0
BL44B2
SPring-8
1.000
SYNCHROTRON
SPRING-8 BEAMLINE BL44B2
6494.195
CENP-B BOX DNA
1
syn
polymer
6392.151
CENP-B BOX DNA
1
syn
polymer
15169.706
MAJOR CENTROMERE AUTOANTIGEN B
DNA BINDING DOMAIN
1
man
polymer
18.015
water
98
nat
water
CENP-B
no
no
(DG)(DC)(DC)(DT)(DT)(DC)(DG)(DT)(DT)(DG)(DG)(DA)(DA)(DA)(DC)(DG)(DG)(DG)(DA)(DT)
(DT)
GCCTTCGTTGGAAACGGGATT
B
polydeoxyribonucleotide
no
no
(DA)(DA)(DT)(DC)(DC)(DC)(DG)(DT)(DT)(DT)(DC)(DC)(DA)(DA)(DC)(DG)(DA)(DA)(DG)(DG)
(DC)
AATCCCGTTTCCAACGAAGGC
C
polydeoxyribonucleotide
no
no
MGPKRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILASERKYGVASTCRKTNKLSPYDKLEGL
LIAWFQQIRAAGLPVKGIILKEKALRIAEELGMDDFTASNGWLDRFRRRRS
MGPKRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILASERKYGVASTCRKTNKLSPYDKLEGL
LIAWFQQIRAAGLPVKGIILKEKALRIAEELGMDDFTASNGWLDRFRRRRS
A
trt001000209.1
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
CENP-B
9606
Homo sapiens
562
Escherichia coli
JM109(DE3)
PLASMID
PET15D
1
4.88
74.80
VAPOR DIFFUSION, HANGING DROP
6.5
MPD, potassium cacodylate, magnesium chloride, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
MPD
1
potassium cacodylate
1
MgCl2
1
MPD
2
-1.860
1
19
B
1
C
21
1.229
B_DG1:DC21_C
1
-3.827
0.243
-0.027
-0.002
-3.219
1
19
B
2
C
20
-3.607
B_DC2:DG20_C
2
-6.262
0.213
0.377
-0.004
1.752
1
19
B
3
C
19
-0.611
B_DC3:DG19_C
3
-4.512
-0.156
0.183
0.003
1.313
1
20
B
4
C
18
-3.581
B_DT4:DA18_C
4
-10.697
-0.622
0.076
-0.288
1.788
1
20
B
5
C
17
-6.774
B_DT5:DA17_C
5
-15.926
-0.481
-0.053
-0.157
-6.416
1
19
B
6
C
16
-0.798
B_DC6:DG16_C
6
-9.697
0.167
0.114
-0.243
-11.960
1
19
B
7
C
15
1.847
B_DG7:DC15_C
7
-6.879
-0.035
-0.216
-0.057
-1.289
1
20
B
8
C
14
1.368
B_DT8:DA14_C
8
-8.979
-0.150
0.020
-0.117
7.016
1
20
B
9
C
13
2.558
B_DT9:DA13_C
9
-2.675
-0.042
-0.151
-0.266
8.114
1
19
B
10
C
12
1.201
B_DG10:DC12_C
10
-12.878
0.116
0.520
-0.011
5.623
1
19
B
11
C
11
-0.844
B_DG11:DC11_C
11
2.063
-0.212
-0.056
-0.145
9.183
1
20
B
12
C
10
-3.639
B_DA12:DT10_C
12
-11.571
-0.171
-0.087
0.004
9.068
1
20
B
13
C
9
0.249
B_DA13:DT9_C
13
-9.801
0.417
-0.090
-0.023
-7.521
1
20
B
14
C
8
9.099
B_DA14:DT8_C
14
-16.198
-0.081
-0.387
-0.049
-10.523
1
19
B
15
C
7
0.545
B_DC15:DG7_C
15
-7.365
0.113
-0.011
-0.028
4.010
1
19
B
16
C
6
-1.479
B_DG16:DC6_C
16
0.793
-0.438
-0.017
-0.210
23.658
1
19
B
17
C
5
-1.351
B_DG17:DC5_C
17
1.974
0.012
0.408
-0.031
14.953
1
19
B
18
C
4
-1.470
B_DG18:DC4_C
18
-17.576
-0.346
0.431
-0.001
1.097
1
20
B
19
C
3
8.928
B_DA19:DT3_C
19
-17.945
-0.268
0.441
-0.115
-5.282
1
20
B
20
C
2
4.412
B_DT20:DA2_C
20
-21.094
0.234
0.504
0.070
-11.641
1
20
B
21
C
1
-2.472
B_DT21:DA1_C
21
-22.066
-0.275
0.065
0.083
3.362
36.091
B
B
1
2
0.407
C
C
21
20
3.317
0.252
-0.739
-0.355
BB_DG1DC2:DG20DC21_CC
1
-2.936
4.744
35.974
-0.610
0.769
3.203
33.175
B
B
2
3
5.354
C
C
20
19
3.167
3.048
0.808
-0.172
BB_DC2DC3:DG19DG20_CC
2
3.371
-5.922
32.871
-0.802
-0.862
3.236
28.218
B
B
3
4
3.277
C
C
19
18
3.270
1.597
-0.469
-0.303
BB_DC3DT4:DA18DG19_CC
3
0.701
-1.438
28.166
-0.992
1.124
3.206
36.379
B
B
4
5
3.336
C
C
18
17
3.214
2.081
-0.588
-0.282
BB_DT4DT5:DA17DA18_CC
4
-0.880
1.410
36.311
-0.736
0.822
3.525
44.978
B
B
5
6
2.378
C
C
17
16
3.496
1.819
0.455
0.684
BB_DT5DC6:DG16DA17_CC
5
0.595
-0.778
44.940
0.719
-0.537
3.597
36.872
B
B
6
7
10.690
C
C
16
15
3.366
6.712
1.016
1.093
BB_DC6DG7:DC15DG16_CC
6
4.243
-6.759
36.036
0.749
-0.987
3.173
32.022
B
B
7
8
2.928
C
C
15
14
3.135
1.614
-0.279
0.672
BB_DG7DT8:DA14DC15_CC
7
-1.248
2.263
31.959
0.938
0.288
3.380
36.195
B
B
8
9
6.713
C
C
14
13
3.142
4.150
1.550
0.773
BB_DT8DT9:DA13DA14_CC
8
4.744
-7.673
35.660
0.658
-1.825
3.370
42.946
B
B
9
10
-5.201
C
C
13
12
3.355
-3.792
-0.996
0.890
BB_DT9DG10:DC12DA13_CC
9
-5.953
8.164
42.389
1.605
0.749
3.531
35.904
B
B
10
11
-10.211
C
C
12
11
3.513
-6.245
1.367
0.498
BB_DG10DG11:DC11DC12_CC
10
5.047
-8.253
35.024
1.782
-1.430
3.342
37.995
B
B
11
12
0.812
C
C
11
10
3.289
0.528
-1.200
0.489
BB_DG11DA12:DT10DC11_CC
11
-1.629
2.504
37.958
0.683
1.633
3.273
32.242
B
B
12
13
3.231
C
C
10
9
3.310
1.793
0.638
-0.352
BB_DA12DA13:DT9DT10_CC
12
-0.623
1.123
32.187
-0.955
-1.261
3.591
40.307
B
B
13
14
-3.707
C
C
9
8
3.588
-2.549
-0.185
-0.144
BB_DA13DA14:DT8DT9_CC
13
-4.060
5.905
40.033
0.108
-0.237
3.064
31.807
B
B
14
15
14.127
C
C
8
7
3.321
7.646
-0.820
-1.034
BB_DA14DC15:DG7DT8_CC
14
-4.368
8.070
30.594
-3.280
0.700
3.374
32.785
B
B
15
16
11.114
C
C
7
6
3.213
6.201
0.363
1.114
BB_DC15DG16:DC6DG7_CC
15
6.191
-11.097
31.624
0.879
0.450
2.807
26.191
B
B
16
17
28.035
C
C
6
5
2.931
12.204
0.440
0.576
BB_DG16DG17:DC5DC6_CC
16
-2.644
6.075
23.068
-1.822
-1.642
3.567
37.058
B
B
17
18
-0.124
C
C
5
4
3.578
-0.079
-0.361
0.124
BB_DG17DG18:DC4DC5_CC
17
1.004
-1.579
37.044
0.207
0.714
3.465
39.956
B
B
18
19
-0.198
C
C
4
3
3.477
-0.135
0.315
-0.475
BB_DG18DA19:DT3DC4_CC
18
-1.547
2.264
39.927
-0.679
-0.650
3.257
36.307
B
B
19
20
2.886
C
C
3
2
3.281
1.797
-0.313
-0.611
BB_DA19DT20:DA2DT3_CC
19
-1.265
2.032
36.243
-1.232
0.326
3.123
34.742
B
B
20
21
3.390
C
C
2
1
3.162
2.022
-0.670
-0.061
BB_DT20DT21:DA1DA2_CC
20
1.476
-2.474
34.655
-0.399
1.339
RIKEN Structural Genomics/Proteomics Initiative
RSGI
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
1
0
2002-01-11
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
Solution structure of CENP-B(1-56)
Crystal structure of the DNA-binding domain
of yeast RAP1 in complex with telomeric DNA.
Crystal Structure of the Human Pax-6 Paired Domain-DNA Complex
Y
RCSB
Y
RCSB
2000-12-04
REL
REL
HOH
water
This sequence occurs naturally in humans.
sample
This sequence occurs naturally in humans.
sample
TIP
4
4
HOH
HOH
22
B
TIP
6
4
HOH
HOH
23
B
TIP
7
4
HOH
HOH
24
B
TIP
13
4
HOH
HOH
25
B
TIP
14
4
HOH
HOH
26
B
TIP
20
4
HOH
HOH
27
B
TIP
22
4
HOH
HOH
28
B
TIP
24
4
HOH
HOH
29
B
TIP
29
4
HOH
HOH
30
B
TIP
32
4
HOH
HOH
31
B
TIP
33
4
HOH
HOH
32
B
TIP
36
4
HOH
HOH
33
B
TIP
40
4
HOH
HOH
34
B
TIP
45
4
HOH
HOH
35
B
TIP
50
4
HOH
HOH
36
B
TIP
51
4
HOH
HOH
37
B
TIP
63
4
HOH
HOH
38
B
TIP
65
4
HOH
HOH
39
B
TIP
68
4
HOH
HOH
40
B
TIP
69
4
HOH
HOH
41
B
TIP
75
4
HOH
HOH
42
B
TIP
76
4
HOH
HOH
43
B
TIP
77
4
HOH
HOH
44
B
TIP
79
4
HOH
HOH
45
B
TIP
80
4
HOH
HOH
46
B
TIP
81
4
HOH
HOH
47
B
TIP
84
4
HOH
HOH
48
B
TIP
85
4
HOH
HOH
49
B
TIP
91
4
HOH
HOH
50
B
TIP
96
4
HOH
HOH
51
B
TIP
8
4
HOH
HOH
22
C
TIP
12
4
HOH
HOH
23
C
TIP
16
4
HOH
HOH
24
C
TIP
18
4
HOH
HOH
25
C
TIP
21
4
HOH
HOH
26
C
TIP
23
4
HOH
HOH
27
C
TIP
25
4
HOH
HOH
28
C
TIP
31
4
HOH
HOH
29
C
TIP
34
4
HOH
HOH
30
C
TIP
38
4
HOH
HOH
31
C
TIP
43
4
HOH
HOH
32
C
TIP
46
4
HOH
HOH
33
C
TIP
49
4
HOH
HOH
34
C
TIP
53
4
HOH
HOH
35
C
TIP
58
4
HOH
HOH
36
C
TIP
60
4
HOH
HOH
37
C
TIP
62
4
HOH
HOH
38
C
TIP
70
4
HOH
HOH
39
C
TIP
71
4
HOH
HOH
40
C
TIP
72
4
HOH
HOH
41
C
TIP
86
4
HOH
HOH
42
C
TIP
93
4
HOH
HOH
43
C
TIP
94
4
HOH
HOH
44
C
TIP
95
4
HOH
HOH
45
C
TIP
1
4
HOH
HOH
132
A
TIP
2
4
HOH
HOH
133
A
TIP
3
4
HOH
HOH
134
A
TIP
5
4
HOH
HOH
135
A
TIP
9
4
HOH
HOH
136
A
TIP
10
4
HOH
HOH
137
A
TIP
11
4
HOH
HOH
138
A
TIP
15
4
HOH
HOH
139
A
TIP
17
4
HOH
HOH
140
A
TIP
19
4
HOH
HOH
141
A
TIP
26
4
HOH
HOH
142
A
TIP
27
4
HOH
HOH
143
A
TIP
28
4
HOH
HOH
144
A
TIP
30
4
HOH
HOH
145
A
TIP
35
4
HOH
HOH
146
A
TIP
37
4
HOH
HOH
147
A
TIP
39
4
HOH
HOH
148
A
TIP
41
4
HOH
HOH
149
A
TIP
42
4
HOH
HOH
150
A
TIP
44
4
HOH
HOH
151
A
TIP
47
4
HOH
HOH
152
A
TIP
48
4
HOH
HOH
153
A
TIP
52
4
HOH
HOH
154
A
TIP
54
4
HOH
HOH
155
A
TIP
55
4
HOH
HOH
156
A
TIP
56
4
HOH
HOH
157
A
TIP
57
4
HOH
HOH
158
A
TIP
59
4
HOH
HOH
159
A
TIP
61
4
HOH
HOH
160
A
TIP
64
4
HOH
HOH
161
A
TIP
66
4
HOH
HOH
162
A
TIP
67
4
HOH
HOH
163
A
TIP
73
4
HOH
HOH
164
A
TIP
74
4
HOH
HOH
165
A
TIP
78
4
HOH
HOH
166
A
TIP
82
4
HOH
HOH
167
A
TIP
83
4
HOH
HOH
168
A
TIP
87
4
HOH
HOH
169
A
TIP
88
4
HOH
HOH
170
A
TIP
89
4
HOH
HOH
171
A
TIP
90
4
HOH
HOH
172
A
TIP
92
4
HOH
HOH
173
A
TIP
97
4
HOH
HOH
174
A
TIP
98
4
HOH
HOH
175
A
GUA
1
n
1
DG
1
B
CYT
2
n
2
DC
2
B
CYT
3
n
3
DC
3
B
THY
4
n
4
DT
4
B
THY
5
n
5
DT
5
B
CYT
6
n
6
DC
6
B
GUA
7
n
7
DG
7
B
THY
8
n
8
DT
8
B
THY
9
n
9
DT
9
B
GUA
10
n
10
DG
10
B
GUA
11
n
11
DG
11
B
ADE
12
n
12
DA
12
B
ADE
13
n
13
DA
13
B
ADE
14
n
14
DA
14
B
CYT
15
n
15
DC
15
B
GUA
16
n
16
DG
16
B
GUA
17
n
17
DG
17
B
GUA
18
n
18
DG
18
B
ADE
19
n
19
DA
19
B
THY
20
n
20
DT
20
B
THY
21
n
21
DT
21
B
ADE
1
n
1
DA
1
C
ADE
2
n
2
DA
2
C
THY
3
n
3
DT
3
C
CYT
4
n
4
DC
4
C
CYT
5
n
5
DC
5
C
CYT
6
n
6
DC
6
C
GUA
7
n
7
DG
7
C
THY
8
n
8
DT
8
C
THY
9
n
9
DT
9
C
THY
10
n
10
DT
10
C
CYT
11
n
11
DC
11
C
CYT
12
n
12
DC
12
C
ADE
13
n
13
DA
13
C
ADE
14
n
14
DA
14
C
CYT
15
n
15
DC
15
C
GUA
16
n
16
DG
16
C
ADE
17
n
17
DA
17
C
ADE
18
n
18
DA
18
C
GUA
19
n
19
DG
19
C
GUA
20
n
20
DG
20
C
CYT
21
n
21
DC
21
C
MET
1
n
1
MET
1
A
GLY
2
n
2
GLY
2
A
PRO
3
n
3
PRO
3
A
LYS
4
n
4
LYS
4
A
ARG
5
n
5
ARG
5
A
ARG
6
n
6
ARG
6
A
GLN
7
n
7
GLN
7
A
LEU
8
n
8
LEU
8
A
THR
9
n
9
THR
9
A
PHE
10
n
10
PHE
10
A
ARG
11
n
11
ARG
11
A
GLU
12
n
12
GLU
12
A
LYS
13
n
13
LYS
13
A
SER
14
n
14
SER
14
A
ARG
15
n
15
ARG
15
A
ILE
16
n
16
ILE
16
A
ILE
17
n
17
ILE
17
A
GLN
18
n
18
GLN
18
A
GLU
19
n
19
GLU
19
A
VAL
20
n
20
VAL
20
A
GLU
21
n
21
GLU
21
A
GLU
22
n
22
GLU
22
A
ASN
23
n
23
ASN
23
A
PRO
24
n
24
PRO
24
A
ASP
25
n
25
ASP
25
A
LEU
26
n
26
LEU
26
A
ARG
27
n
27
ARG
27
A
LYS
28
n
28
LYS
28
A
GLY
29
n
29
GLY
29
A
GLU
30
n
30
GLU
30
A
ILE
31
n
31
ILE
31
A
ALA
32
n
32
ALA
32
A
ARG
33
n
33
ARG
33
A
ARG
34
n
34
ARG
34
A
PHE
35
n
35
PHE
35
A
ASN
36
n
36
ASN
36
A
ILE
37
n
37
ILE
37
A
PRO
38
n
38
PRO
38
A
PRO
39
n
39
PRO
39
A
SER
40
n
40
SER
40
A
THR
41
n
41
THR
41
A
LEU
42
n
42
LEU
42
A
SER
43
n
43
SER
43
A
THR
44
n
44
THR
44
A
ILE
45
n
45
ILE
45
A
LEU
46
n
46
LEU
46
A
LYS
47
n
47
LYS
47
A
ASN
48
n
48
ASN
48
A
LYS
49
n
49
LYS
49
A
ARG
50
n
50
ARG
50
A
ALA
51
n
51
ALA
51
A
ILE
52
n
52
ILE
52
A
LEU
53
n
53
LEU
53
A
ALA
54
n
54
ALA
54
A
SER
55
n
55
SER
55
A
GLU
56
n
56
GLU
56
A
ARG
57
n
57
ARG
57
A
LYS
58
n
58
LYS
58
A
TYR
59
n
59
TYR
59
A
GLY
60
n
60
GLY
60
A
VAL
61
n
61
VAL
61
A
ALA
62
n
62
ALA
62
A
SER
63
n
63
SER
63
A
THR
64
n
64
THR
64
A
CYS
65
n
65
CYS
65
A
ARG
66
n
66
ARG
66
A
LYS
67
n
67
LYS
67
A
THR
68
n
68
THR
68
A
ASN
69
n
69
ASN
69
A
LYS
70
n
70
LYS
70
A
LEU
71
n
71
LEU
71
A
SER
72
n
72
SER
72
A
PRO
73
n
73
PRO
73
A
TYR
74
n
74
TYR
74
A
ASP
75
n
75
ASP
75
A
LYS
76
n
76
LYS
76
A
LEU
77
n
77
LEU
77
A
GLU
78
n
78
GLU
78
A
GLY
79
n
79
GLY
79
A
LEU
80
n
80
LEU
80
A
LEU
81
n
81
LEU
81
A
ILE
82
n
82
ILE
82
A
ALA
83
n
83
ALA
83
A
TRP
84
n
84
TRP
84
A
PHE
85
n
85
PHE
85
A
GLN
86
n
86
GLN
86
A
GLN
87
n
87
GLN
87
A
ILE
88
n
88
ILE
88
A
ARG
89
n
89
ARG
89
A
ALA
90
n
90
ALA
90
A
ALA
91
n
91
ALA
91
A
GLY
92
n
92
GLY
92
A
LEU
93
n
93
LEU
93
A
PRO
94
n
94
PRO
94
A
VAL
95
n
95
VAL
95
A
LYS
96
n
96
LYS
96
A
GLY
97
n
97
GLY
97
A
ILE
98
n
98
ILE
98
A
ILE
99
n
99
ILE
99
A
LEU
100
n
100
LEU
100
A
LYS
101
n
101
LYS
101
A
GLU
102
n
102
GLU
102
A
LYS
103
n
103
LYS
103
A
ALA
104
n
104
ALA
104
A
LEU
105
n
105
LEU
105
A
ARG
106
n
106
ARG
106
A
ILE
107
n
107
ILE
107
A
ALA
108
n
108
ALA
108
A
GLU
109
n
109
GLU
109
A
GLU
110
n
110
GLU
110
A
LEU
111
n
111
LEU
111
A
GLY
112
n
112
GLY
112
A
MET
113
n
113
MET
113
A
ASP
114
n
114
ASP
114
A
ASP
115
n
115
ASP
115
A
PHE
116
n
116
PHE
116
A
THR
117
n
117
THR
117
A
ALA
118
n
118
ALA
118
A
SER
119
n
119
SER
119
A
ASN
120
n
120
ASN
120
A
GLY
121
n
121
GLY
121
A
TRP
122
n
122
TRP
122
A
LEU
123
n
123
LEU
123
A
ASP
124
n
124
ASP
124
A
ARG
125
n
125
ARG
125
A
PHE
126
n
126
PHE
126
A
ARG
127
n
127
ARG
127
A
ARG
128
n
128
ARG
128
A
ARG
129
n
129
ARG
129
A
ARG
130
n
130
ARG
130
A
SER
131
n
131
SER
131
A
author_defined_assembly
3
trimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
B
DG
10
0.057
SIDE CHAIN
1
C
DA
14
0.073
SIDE CHAIN
1
A
ASN
69
-90.35
41.50
1
A
SER
119
-46.69
155.89
1
A
ARG
129
-67.15
-82.01
1
A
ARG
130
-57.97
-7.33
45.8703
-5.82
-4.385
0.000
-5.820
0.000
11.639
0.2599000
0.2219000
0.2219000
0.2219000
2.5
30
940
19313
19313
99.5
RANDOM
1
0.0
0.0
MIR
Engh & Huber
0.41
0.35
5.0
0.39
0.36
2.5
30
98
2019
0
855
1066
1.07324
0.005558
18.42049
1.27355
0.3931000
0.3484000
2.59
87
0.976
0.3440000
0.3204000
2.69
104
0.998
0.3053000
0.2793000
2.82
86
0.9953
0.3659000
0.3077000
2.96
97
0.9985
0.3268000
0.2693000
3.15
85
0.999
0.2568000
0.2201000
3.39
105
0.9985
0.2872000
0.2454000
3.73
95
1.000
0.2163000
0.2013000
4.27
97
1.000
0.2383000
0.1788000
5.38
86
0.9994
0.2027000
0.1723000
30.0
98
0.9896
58.195
2.5
40
1HLV
19313
19313
0.0
0.0
0.0450000
0.0450000
1
13.9
20.9
99.5
0.2160000
2.5
2.59
0.2160000
99.80
phasing
MLPHARE
refinement
CNS
data reduction
DENZO
data scaling
SCALEPACK
CRYSTAL STRUCTURE OF CENP-B(1-129) COMPLEXED WITH THE CENP-B BOX DNA
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
A
THR
9
C
THR
9
HELX_P
A
ASN
23
C
ASN
23
1
1
15
A
ARG
27
C
ARG
27
HELX_P
A
ASN
36
C
ASN
36
1
2
10
A
PRO
38
C
PRO
38
HELX_P
A
ASN
48
C
ASN
48
1
3
11
A
ASN
48
C
ASN
48
HELX_P
A
GLY
60
C
GLY
60
1
4
13
A
VAL
61
C
VAL
61
HELX_P
A
CYS
65
C
CYS
65
5
5
5
A
TYR
74
C
TYR
74
HELX_P
A
ARG
89
C
ARG
89
1
6
16
A
ALA
90
C
ALA
90
HELX_P
A
GLY
92
C
GLY
92
5
7
3
A
LYS
96
C
LYS
96
HELX_P
A
GLY
112
C
GLY
112
1
8
17
A
SER
119
C
SER
119
HELX_P
A
ARG
130
C
ARG
130
1
9
12
hydrog
WATSON-CRICK
B
DG
1
A
N1
DG
1
1_555
C
DC
21
B
N3
DC
21
1_555
hydrog
WATSON-CRICK
B
DG
1
A
N2
DG
1
1_555
C
DC
21
B
O2
DC
21
1_555
hydrog
WATSON-CRICK
B
DG
1
A
O6
DG
1
1_555
C
DC
21
B
N4
DC
21
1_555
hydrog
WATSON-CRICK
B
DC
2
A
N3
DC
2
1_555
C
DG
20
B
N1
DG
20
1_555
hydrog
WATSON-CRICK
B
DC
2
A
N4
DC
2
1_555
C
DG
20
B
O6
DG
20
1_555
hydrog
WATSON-CRICK
B
DC
2
A
O2
DC
2
1_555
C
DG
20
B
N2
DG
20
1_555
hydrog
WATSON-CRICK
B
DC
3
A
N3
DC
3
1_555
C
DG
19
B
N1
DG
19
1_555
hydrog
WATSON-CRICK
B
DC
3
A
N4
DC
3
1_555
C
DG
19
B
O6
DG
19
1_555
hydrog
WATSON-CRICK
B
DC
3
A
O2
DC
3
1_555
C
DG
19
B
N2
DG
19
1_555
hydrog
WATSON-CRICK
B
DT
4
A
N3
DT
4
1_555
C
DA
18
B
N1
DA
18
1_555
hydrog
WATSON-CRICK
B
DT
4
A
O4
DT
4
1_555
C
DA
18
B
N6
DA
18
1_555
hydrog
WATSON-CRICK
B
DT
5
A
N3
DT
5
1_555
C
DA
17
B
N1
DA
17
1_555
hydrog
WATSON-CRICK
B
DT
5
A
O4
DT
5
1_555
C
DA
17
B
N6
DA
17
1_555
hydrog
WATSON-CRICK
B
DC
6
A
N3
DC
6
1_555
C
DG
16
B
N1
DG
16
1_555
hydrog
WATSON-CRICK
B
DC
6
A
N4
DC
6
1_555
C
DG
16
B
O6
DG
16
1_555
hydrog
WATSON-CRICK
B
DC
6
A
O2
DC
6
1_555
C
DG
16
B
N2
DG
16
1_555
hydrog
WATSON-CRICK
B
DG
7
A
N1
DG
7
1_555
C
DC
15
B
N3
DC
15
1_555
hydrog
WATSON-CRICK
B
DG
7
A
N2
DG
7
1_555
C
DC
15
B
O2
DC
15
1_555
hydrog
WATSON-CRICK
B
DG
7
A
O6
DG
7
1_555
C
DC
15
B
N4
DC
15
1_555
hydrog
WATSON-CRICK
B
DT
8
A
N3
DT
8
1_555
C
DA
14
B
N1
DA
14
1_555
hydrog
WATSON-CRICK
B
DT
8
A
O4
DT
8
1_555
C
DA
14
B
N6
DA
14
1_555
hydrog
WATSON-CRICK
B
DT
9
A
N3
DT
9
1_555
C
DA
13
B
N1
DA
13
1_555
hydrog
WATSON-CRICK
B
DT
9
A
O4
DT
9
1_555
C
DA
13
B
N6
DA
13
1_555
hydrog
WATSON-CRICK
B
DG
10
A
N1
DG
10
1_555
C
DC
12
B
N3
DC
12
1_555
hydrog
WATSON-CRICK
B
DG
10
A
N2
DG
10
1_555
C
DC
12
B
O2
DC
12
1_555
hydrog
WATSON-CRICK
B
DG
10
A
O6
DG
10
1_555
C
DC
12
B
N4
DC
12
1_555
hydrog
WATSON-CRICK
B
DG
11
A
N1
DG
11
1_555
C
DC
11
B
N3
DC
11
1_555
hydrog
WATSON-CRICK
B
DG
11
A
N2
DG
11
1_555
C
DC
11
B
O2
DC
11
1_555
hydrog
WATSON-CRICK
B
DG
11
A
O6
DG
11
1_555
C
DC
11
B
N4
DC
11
1_555
hydrog
WATSON-CRICK
B
DA
12
A
N1
DA
12
1_555
C
DT
10
B
N3
DT
10
1_555
hydrog
WATSON-CRICK
B
DA
12
A
N6
DA
12
1_555
C
DT
10
B
O4
DT
10
1_555
hydrog
WATSON-CRICK
B
DA
13
A
N1
DA
13
1_555
C
DT
9
B
N3
DT
9
1_555
hydrog
WATSON-CRICK
B
DA
13
A
N6
DA
13
1_555
C
DT
9
B
O4
DT
9
1_555
hydrog
WATSON-CRICK
B
DA
14
A
N1
DA
14
1_555
C
DT
8
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
B
DA
14
A
N6
DA
14
1_555
C
DT
8
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
B
DC
15
A
N3
DC
15
1_555
C
DG
7
B
N1
DG
7
1_555
hydrog
WATSON-CRICK
B
DC
15
A
N4
DC
15
1_555
C
DG
7
B
O6
DG
7
1_555
hydrog
WATSON-CRICK
B
DC
15
A
O2
DC
15
1_555
C
DG
7
B
N2
DG
7
1_555
hydrog
WATSON-CRICK
B
DG
16
A
N1
DG
16
1_555
C
DC
6
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
B
DG
16
A
N2
DG
16
1_555
C
DC
6
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
B
DG
16
A
O6
DG
16
1_555
C
DC
6
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
B
DG
17
A
N1
DG
17
1_555
C
DC
5
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
B
DG
17
A
N2
DG
17
1_555
C
DC
5
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
B
DG
17
A
O6
DG
17
1_555
C
DC
5
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
B
DG
18
A
N1
DG
18
1_555
C
DC
4
B
N3
DC
4
1_555
hydrog
WATSON-CRICK
B
DG
18
A
N2
DG
18
1_555
C
DC
4
B
O2
DC
4
1_555
hydrog
WATSON-CRICK
B
DG
18
A
O6
DG
18
1_555
C
DC
4
B
N4
DC
4
1_555
hydrog
WATSON-CRICK
B
DA
19
A
N1
DA
19
1_555
C
DT
3
B
N3
DT
3
1_555
hydrog
WATSON-CRICK
B
DA
19
A
N6
DA
19
1_555
C
DT
3
B
O4
DT
3
1_555
hydrog
WATSON-CRICK
B
DT
20
A
N3
DT
20
1_555
C
DA
2
B
N1
DA
2
1_555
hydrog
WATSON-CRICK
B
DT
20
A
O4
DT
20
1_555
C
DA
2
B
N6
DA
2
1_555
hydrog
WATSON-CRICK
B
DT
21
A
N3
DT
21
1_555
C
DA
1
B
N1
DA
1
1_555
hydrog
WATSON-CRICK
B
DT
21
A
O4
DT
21
1_555
C
DA
1
B
N6
DA
1
1_555
DNA BINDING PROTEIN/DNA
HELIX-TURN-HELIX, PROTEIN-DNA COMPLEX, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, DNA BINDING PROTEIN-DNA COMPLEX
CENPB_HUMAN
UNP
3
1
P07199
MGPKRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILASERKYGVASTCRKTNKLSPYDKLEGL
LIAWFQQIRAAGLPVKGIILKEKALRIAEELGMDDFTASNGWLDRFRRR
1HLV
PDB
1
1HLV
1HLV
PDB
2
1HLV
1
129
1HLV
1
129
P07199
A
1
1
129
1
21
1HLV
1
21
1HLV
B
2
1
21
1
21
1HLV
1
21
1HLV
C
3
1
21
1
cloning artifact
ARG
130
1HLV
A
P07199
UNP
130
1
cloning artifact
SER
131
1HLV
A
P07199
UNP
131
151
P 31 1 2