0.027881 -0.010038 -0.009032 0.000000 0.026837 0.000057 0.000000 0.000000 0.017945 0.00000 0.00000 0.00000 Sierk, M.L. Zhao, Q. Rastinejad, F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 84.13 72.09 70.20 35.867 39.603 58.565 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N O N 89 N P N 90 N O N 91 N O N 92 N O N 93 N C N 94 R C N 95 N O N 96 S C N 97 N O N 98 N C N 99 R C Y 100 N N Y 101 N C Y 102 N N Y 103 N C Y 104 N C N 105 N N Y 106 N N Y 107 N C Y 108 N N Y 109 N C N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N O N 125 N P N 126 N O N 127 N O N 128 N O N 129 N C N 130 R C N 131 N O N 132 S C N 133 N O N 134 N C N 135 R C N 136 N N N 137 N C N 138 N O N 139 N N N 140 N C N 141 N N N 142 N C N 143 N C N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N P N 160 N O N 161 N O N 162 N O N 163 N C N 164 R C N 165 N O N 166 S C N 167 N O N 168 N C N 169 R C Y 170 N N Y 171 N C Y 172 N N Y 173 N C N 174 N C N 175 N O N 176 N N N 177 N C N 178 N N N 179 N N Y 180 N C N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N O N 196 N P N 197 N O N 198 N O N 199 N O N 200 N C N 201 R C N 202 N O N 203 S C N 204 N O N 205 N C N 206 R C N 207 N N N 208 N C N 209 N O N 210 N N N 211 N C N 212 N O N 213 N C N 214 N C N 215 N C N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N C N 238 N O N 239 N N N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C N 256 N C N 257 N C N 258 N O N 259 N O N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 N C N 272 N C N 273 N O N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N N N 281 S C N 282 N C N 283 N O N 284 N C Y 285 N C Y 286 N N Y 287 N C Y 288 N C Y 289 N N N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N O N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 S C N 309 N C N 310 N C N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C N 331 N C N 332 N C N 333 N C N 334 N O N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C N 353 N C N 354 N C N 355 N C N 356 N N N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N S N 380 N C N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N N N 394 S C N 395 N C N 396 N O N 397 N C Y 398 N C Y 399 N C Y 400 N C Y 401 N C Y 402 N C Y 403 N C N 404 N O N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N N N 417 S C N 418 N C N 419 N O N 420 N C N 421 N C N 422 N C N 423 N O N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N N N 434 S C N 435 N C N 436 N O N 437 N C N 438 N O N 439 N O N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N N N 448 S C N 449 N C N 450 N O N 451 R C N 452 N O N 453 N C N 454 N O N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N N N 465 S C N 466 N C N 467 N O N 468 N C Y 469 N C Y 470 N C Y 471 N C Y 472 N C Y 473 N C Y 474 N C N 475 N O N 476 N O N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N N N 489 S C N 490 N C N 491 N O N 492 N C N 493 N C N 494 N C N 495 N O N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing Y 106 N sing Y 107 N sing Y 108 N doub N 109 N sing Y 110 N sing Y 111 N sing Y 112 N doub N 113 N sing Y 114 N doub N 115 N sing N 116 N sing Y 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N sing Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N doub N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N doub N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing Y 289 N sing Y 290 N doub Y 291 N doub N 292 N sing Y 293 N sing N 294 N sing Y 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing Y 397 N doub Y 398 N sing Y 399 N sing N 400 N sing Y 401 N doub N 402 N sing Y 403 N doub N 404 N sing Y 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N doub N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N doub N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N doub N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N doub N 462 N sing N 463 N sing N 464 N sing N 465 N sing Y 466 N doub Y 467 N sing Y 468 N sing N 469 N sing Y 470 N doub N 471 N sing Y 472 N doub N 473 N sing Y 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N doub N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing US Biochemistry BICHAW 0033 0006-2960 40 12833 12843 10.1021/bi011086r 11669620 DNA Deformability as a Recognition Feature in the RevErb Response Element 2001 US Mol.Cell MOCEFL 2168 1097-2765 1 849 861 10.1016/S1097-2765(00)80084-2 Structural Elements of an Orphan Nuclear Receptor-DNA Complex 1998 10.2210/pdb1hlz/pdb pdb_00001hlz 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 Double crystal monochromator with sagittally focussed second crystal. Two spherical mirrors. IMAGE PLATE 1997-04-05 FUJI Double crystal monochromator with sagittally focussed second crystal MAD M x-ray 1 0.92016 1.0 X4A NSLS 0.92016 SYNCHROTRON NSLS BEAMLINE X4A 6142.993 5'-D(*CP*AP*AP*CP*TP*AP*GP*GP*TP*CP*AP*CP*TP*AP*GP*GP*TP*CP*AP*G)-3' 1 syn polymer 6124.965 5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*GP*TP*GP*AP*CP*CP*TP*AP*GP*TP*TP*G)-3' 1 syn polymer 10902.009 ORPHAN NUCLEAR RECEPTOR NR1D1 DNA-BINDING DOMAIN PLUS C-TERMINAL EXTENSION 2 man polymer 65.409 ZINC ION 4 syn non-polymer 18.015 water 9 nat water REV-ERB(ALPHA) no no (DC)(DA)(DA)(DC)(DT)(DA)(DG)(DG)(DT)(DC)(DA)(DC)(DT)(DA)(DG)(DG)(DT)(DC)(DA)(DG) CAACTAGGTCACTAGGTCAG C polydeoxyribonucleotide no no (DC)(DT)(DG)(DA)(DC)(DC)(DT)(DA)(DG)(DT)(DG)(DA)(DC)(DC)(DT)(DA)(DG)(DT)(DT)(DG) CTGACCTAGTGACCTAGTTG D polydeoxyribonucleotide no no TKLNGMVLLCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDA VRFGRIPKREKQRM TKLNGMVLLCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDA VRFGRIPKREKQRM A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia Escherichia coli sample 9606 Homo sapiens 469008 Escherichia coli BL21(DE3) BL21(DE3) PLASMID PGEX 1 2.16 42.93 VAPOR DIFFUSION, HANGING DROP 7.5 25% PEG8000, 5 mM MgCl2, 400 mM NaCl, Tris buffer, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 290K 290 PEG8000 1 MgCl2 1 NaCl 1 Tris 1 -1.971 1 C 600 D 640 5.128 C_DC600:DG640_D 1 -10.998 0.397 0.350 0.278 3.830 1 20 C 601 D 639 -5.270 C_DA601:DT639_D 2 -20.335 0.607 0.157 -0.046 1.807 1 19 C 603 D 637 5.966 C_DC603:DG637_D 3 -13.500 0.114 -0.251 -0.010 -3.091 1 20 C 604 D 636 1.897 C_DT604:DA636_D 4 -16.008 -0.063 0.227 0.023 2.604 1 20 C 605 D 635 5.049 C_DA605:DT635_D 5 -10.892 -0.654 0.683 0.024 4.392 1 19 C 606 D 634 6.582 C_DG606:DC634_D 6 0.069 0.010 -0.023 -0.165 0.532 1 19 C 607 D 633 2.486 C_DG607:DC633_D 7 -18.023 0.359 -0.232 -0.032 1.614 1 20 C 608 D 632 6.983 C_DT608:DA632_D 8 -20.146 0.011 0.313 0.173 13.381 1 19 C 609 D 631 2.953 C_DC609:DG631_D 9 -6.853 -0.080 -0.349 0.025 7.836 1 20 C 610 D 630 2.351 C_DA610:DT630_D 10 -18.088 0.458 0.790 0.128 -0.412 1 19 C 611 D 629 6.230 C_DC611:DG629_D 11 -8.715 0.171 0.105 0.032 -3.466 1 20 C 612 D 628 -6.923 C_DT612:DA628_D 12 -12.901 -0.511 -0.417 -0.205 -4.467 1 20 C 613 D 627 -3.113 C_DA613:DT627_D 13 -17.923 -1.220 -0.180 -0.092 1.287 1 19 C 614 D 626 4.484 C_DG614:DC626_D 14 -6.104 0.001 -0.014 -0.208 3.799 1 19 C 615 D 625 2.437 C_DG615:DC625_D 15 -12.117 -0.391 0.160 0.000 -2.209 1 20 C 616 D 624 2.133 C_DT616:DA624_D 16 -4.341 -0.218 0.452 -0.441 4.812 1 19 C 617 D 623 3.058 C_DC617:DG623_D 17 -5.797 -0.119 0.452 -0.104 4.322 1 20 C 618 D 622 -5.632 C_DA618:DT622_D 18 -21.403 0.231 0.650 -0.054 2.726 C 619 D 621 10.838 C_DG619:DC621_D 19 -18.080 -0.104 0.889 0.879 3.329 40.571 C C 600 601 2.882 D D 640 639 3.309 1.996 -0.118 0.799 CC_DC600DA601:DT639DG640_DD 1 2.581 -3.726 40.445 0.927 0.462 6.072 66.847 C C 601 603 13.027 D D 639 637 6.258 14.256 1.019 -0.646 CC_DA601DC603:DG637DT639_DD 2 4.639 -4.239 65.335 -1.658 -0.576 3.615 31.490 C C 603 604 10.098 D D 637 636 3.646 5.438 -0.547 -0.106 CC_DC603DT604:DA636DG637_DD 3 -4.188 7.776 30.752 -1.336 0.130 2.883 47.012 C C 604 605 -10.050 D D 636 635 3.156 -7.974 -0.054 1.412 CC_DT604DA605:DT635DA636_DD 4 -3.759 4.738 46.224 2.382 -0.220 3.459 31.830 C C 605 606 -0.739 D D 635 634 3.447 -0.405 0.315 0.152 CC_DA605DG606:DC634DT635_DD 5 3.593 -6.565 31.629 0.356 0.120 3.280 36.984 C C 606 607 13.565 D D 634 633 3.380 8.521 -0.019 0.005 CC_DG606DG607:DC633DC634_DD 6 3.443 -5.481 35.862 -1.179 0.510 3.070 30.203 C C 607 608 13.897 D D 633 632 3.264 7.168 0.041 -0.397 CC_DG607DT608:DA632DC633_DD 7 -2.341 4.539 29.268 -2.194 -0.546 2.945 38.482 C C 608 609 -7.958 D D 632 631 2.978 -5.199 1.218 1.406 CC_DT608DC609:DG631DA632_DD 8 7.472 -11.438 37.429 2.727 -0.996 3.781 42.360 C C 609 610 7.191 D D 631 630 3.641 5.153 -0.568 1.055 CC_DC609DA610:DT630DG631_DD 9 -8.328 11.620 41.263 0.856 -0.191 3.345 34.745 C C 610 611 7.300 D D 630 629 3.411 4.341 0.586 -0.678 CC_DA610DC611:DG629DT630_DD 10 3.644 -6.127 34.294 -1.826 -0.401 2.696 28.064 C C 611 612 22.489 D D 629 628 3.447 10.584 -1.060 -0.704 CC_DC611DT612:DA628DG629_DD 11 5.014 -10.654 25.548 -3.909 3.350 3.245 43.388 C C 612 613 -8.738 D D 628 627 3.411 -6.429 -0.784 1.339 CC_DT612DA613:DT627DA628_DD 12 -4.130 5.613 42.742 2.451 0.649 3.075 37.373 C C 613 614 6.052 D D 627 626 3.115 3.867 0.648 0.389 CC_DA613DG614:DC626DT627_DD 13 -3.175 4.969 37.048 0.123 -1.409 3.250 32.314 C C 614 615 3.481 D D 626 625 3.260 1.936 0.174 -0.099 CC_DG614DG615:DC625DC626_DD 14 0.256 -0.460 32.257 -0.519 -0.268 3.471 34.493 C C 615 616 7.785 D D 625 624 3.614 4.596 0.120 -0.648 CC_DG615DT616:DA624DC625_DD 15 -3.470 5.877 34.023 -1.871 -0.790 3.508 38.472 C C 616 617 2.625 D D 624 623 3.230 1.716 1.435 1.125 CC_DT616DC617:DG623DA624_DD 16 8.553 -13.086 37.507 1.485 -1.069 3.641 39.791 C C 617 618 7.131 D D 623 622 3.429 4.835 -1.173 1.199 CC_DC617DA618:DT622DG623_DD 17 -3.933 5.801 39.319 1.152 1.228 3.362 31.392 C C 618 619 -6.913 D D 622 621 3.362 -3.732 0.900 -0.115 CC_DA618DG619:DC621DT622_DD 18 0.351 -0.650 31.173 0.510 -1.595 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2001-11-16 1 1 2008-04-27 1 2 2011-07-13 1 3 2023-08-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Rev-Erb(alpha) DBD Bound to DNA, Crystal Form I Rev-Erb(alpha) DBD Bound to DNA, Crystal Form II RCSB Y RCSB 2000-12-04 REL REL ZN ZINC ION HOH water Synthesized optimal DR2 target sample Synthesized optimal DR2 target complementary strand sample 1A6Y PDB Entry 1A6Y, residues 132-198 from chain A & B, plus DNA PDB experimental model ZN 450 4 ZN ZN 450 A ZN 451 4 ZN ZN 451 A ZN 550 4 ZN ZN 550 B ZN 551 4 ZN ZN 551 B HOH 803 5 HOH HOH 803 C HOH 804 5 HOH HOH 804 C HOH 806 5 HOH HOH 806 C HOH 807 5 HOH HOH 807 C HOH 800 5 HOH HOH 800 D HOH 802 5 HOH HOH 802 A HOH 805 5 HOH HOH 805 A HOH 801 5 HOH HOH 801 B HOH 808 5 HOH HOH 808 B C 600 n 1 DC 600 C A 601 n 2 DA 601 C A 602 n 3 DA 602 C C 603 n 4 DC 603 C T 604 n 5 DT 604 C A 605 n 6 DA 605 C G 606 n 7 DG 606 C G 607 n 8 DG 607 C T 608 n 9 DT 608 C C 609 n 10 DC 609 C A 610 n 11 DA 610 C C 611 n 12 DC 611 C T 612 n 13 DT 612 C A 613 n 14 DA 613 C G 614 n 15 DG 614 C G 615 n 16 DG 615 C T 616 n 17 DT 616 C C 617 n 18 DC 617 C A 618 n 19 DA 618 C G 619 n 20 DG 619 C C 621 n 1 DC 621 D T 622 n 2 DT 622 D G 623 n 3 DG 623 D A 624 n 4 DA 624 D C 625 n 5 DC 625 D C 626 n 6 DC 626 D T 627 n 7 DT 627 D A 628 n 8 DA 628 D G 629 n 9 DG 629 D T 630 n 10 DT 630 D G 631 n 11 DG 631 D A 632 n 12 DA 632 D C 633 n 13 DC 633 D C 634 n 14 DC 634 D T 635 n 15 DT 635 D A 636 n 16 DA 636 D G 637 n 17 DG 637 D T 638 n 18 DT 638 D T 639 n 19 DT 639 D G 640 n 20 DG 640 D n 1 -8 A n 2 -7 A n 3 -6 A n 4 -5 A n 5 -4 A n 6 -3 A ALA -2 n 7 VAL -2 A ALA -1 n 8 LEU -1 A ALA 0 n 9 LEU 0 A CYS 1 n 10 CYS 1 A LYS 2 n 11 LYS 2 A VAL 3 n 12 VAL 3 A CYS 4 n 13 CYS 4 A GLY 5 n 14 GLY 5 A ASP 6 n 15 ASP 6 A VAL 7 n 16 VAL 7 A ALA 8 n 17 ALA 8 A SER 9 n 18 SER 9 A GLY 10 n 19 GLY 10 A PHE 11 n 20 PHE 11 A HIS 12 n 21 HIS 12 A TYR 13 n 22 TYR 13 A GLY 14 n 23 GLY 14 A VAL 15 n 24 VAL 15 A LEU 16 n 25 LEU 16 A ALA 17 n 26 ALA 17 A CYS 18 n 27 CYS 18 A GLU 19 n 28 GLU 19 A GLY 20 n 29 GLY 20 A CYS 21 n 30 CYS 21 A LYS 22 n 31 LYS 22 A GLY 23 n 32 GLY 23 A PHE 24 n 33 PHE 24 A PHE 25 n 34 PHE 25 A ARG 26 n 35 ARG 26 A ARG 27 n 36 ARG 27 A SER 28 n 37 SER 28 A ILE 29 n 38 ILE 29 A GLN 30 n 39 GLN 30 A ALA 31 n 40 GLN 31 A ALA 32 n 41 ASN 32 A ALA 33 n 42 ILE 33 A ALA 33 n 43 A GLN 33 A TYR 34 n 44 TYR 34 A ALA 35 n 45 LYS 35 A ALA 36 n 46 ARG 36 A CYS 37 n 47 CYS 37 A ALA 38 n 48 LEU 38 A ALA 39 n 49 LYS 39 A ALA 40 n 50 ASN 40 A ALA 41 n 51 GLU 41 A ALA 42 n 52 ASN 42 A CYS 43 n 53 CYS 43 A SER 44 n 54 SER 44 A ILE 45 n 55 ILE 45 A VAL 46 n 56 VAL 46 A ARG 47 n 57 ARG 47 A ILE 48 n 58 ILE 48 A ASN 49 n 59 ASN 49 A ARG 50 n 60 ARG 50 A ASN 51 n 61 ASN 51 A ALA 52 n 62 ARG 52 A CYS 53 n 63 CYS 53 A GLN 54 n 64 GLN 54 A ALA 55 n 65 GLN 55 A CYS 56 n 66 CYS 56 A ARG 57 n 67 ARG 57 A PHE 58 n 68 PHE 58 A ALA 59 n 69 LYS 59 A LYS 60 n 70 LYS 60 A CYS 61 n 71 CYS 61 A LEU 62 n 72 LEU 62 A SER 63 n 73 SER 63 A VAL 64 n 74 VAL 64 A GLY 65 n 75 GLY 65 A MET 66 n 76 MET 66 A SER 67 n 77 SER 67 A ARG 68 n 78 ARG 68 A ASP 69 n 79 ASP 69 A ALA 70 n 80 ALA 70 A VAL 71 n 81 VAL 71 A ARG 72 n 82 ARG 72 A PHE 73 n 83 PHE 73 A GLY 74 n 84 GLY 74 A ARG 75 n 85 ARG 75 A ILE 76 n 86 ILE 76 A PRO 77 n 87 PRO 77 A n 88 78 A n 89 79 A n 90 80 A n 91 81 A n 92 82 A n 93 83 A n 94 84 A n 1 -8 B n 2 -7 B n 3 -6 B n 4 -5 B ALA -4 n 5 GLY -4 B ALA -3 n 6 MET -3 B VAL -2 n 7 VAL -2 B LEU -1 n 8 LEU -1 B LEU 0 n 9 LEU 0 B CYS 1 n 10 CYS 1 B LYS 2 n 11 LYS 2 B VAL 3 n 12 VAL 3 B CYS 4 n 13 CYS 4 B GLY 5 n 14 GLY 5 B ASP 6 n 15 ASP 6 B VAL 7 n 16 VAL 7 B ALA 8 n 17 ALA 8 B SER 9 n 18 SER 9 B GLY 10 n 19 GLY 10 B PHE 11 n 20 PHE 11 B HIS 12 n 21 HIS 12 B TYR 13 n 22 TYR 13 B GLY 14 n 23 GLY 14 B VAL 15 n 24 VAL 15 B LEU 16 n 25 LEU 16 B ALA 17 n 26 ALA 17 B CYS 18 n 27 CYS 18 B GLU 19 n 28 GLU 19 B GLY 20 n 29 GLY 20 B CYS 21 n 30 CYS 21 B LYS 22 n 31 LYS 22 B GLY 23 n 32 GLY 23 B PHE 24 n 33 PHE 24 B PHE 25 n 34 PHE 25 B ARG 26 n 35 ARG 26 B ARG 27 n 36 ARG 27 B SER 28 n 37 SER 28 B ILE 29 n 38 ILE 29 B ALA 30 n 39 GLN 30 B ALA 31 n 40 GLN 31 B ALA 32 n 41 ASN 32 B ALA 33 n 42 ILE 33 B ALA 33 n 43 A GLN 33 B ALA 34 n 44 TYR 34 B ALA 35 n 45 LYS 35 B ALA 36 n 46 ARG 36 B CYS 37 n 47 CYS 37 B LEU 38 n 48 LEU 38 B ALA 39 n 49 LYS 39 B ALA 40 n 50 ASN 40 B ALA 41 n 51 GLU 41 B ALA 42 n 52 ASN 42 B CYS 43 n 53 CYS 43 B SER 44 n 54 SER 44 B ILE 45 n 55 ILE 45 B VAL 46 n 56 VAL 46 B ARG 47 n 57 ARG 47 B ILE 48 n 58 ILE 48 B ASN 49 n 59 ASN 49 B ARG 50 n 60 ARG 50 B ASN 51 n 61 ASN 51 B ARG 52 n 62 ARG 52 B CYS 53 n 63 CYS 53 B GLN 54 n 64 GLN 54 B ALA 55 n 65 GLN 55 B CYS 56 n 66 CYS 56 B ARG 57 n 67 ARG 57 B PHE 58 n 68 PHE 58 B ALA 59 n 69 LYS 59 B LYS 60 n 70 LYS 60 B CYS 61 n 71 CYS 61 B LEU 62 n 72 LEU 62 B SER 63 n 73 SER 63 B VAL 64 n 74 VAL 64 B GLY 65 n 75 GLY 65 B MET 66 n 76 MET 66 B SER 67 n 77 SER 67 B ARG 68 n 78 ARG 68 B ASP 69 n 79 ASP 69 B ALA 70 n 80 ALA 70 B VAL 71 n 81 VAL 71 B ARG 72 n 82 ARG 72 B PHE 73 n 83 PHE 73 B GLY 74 n 84 GLY 74 B ARG 75 n 85 ARG 75 B n 86 76 B n 87 77 B n 88 78 B n 89 79 B n 90 80 B n 91 81 B n 92 82 B n 93 83 B n 94 84 B author_defined_assembly 4 tetrameric A CYS 1 C SG CYS 10 1_555 A ZN 450 E ZN ZN 1_555 A CYS 4 C SG CYS 13 1_555 118.3 A CYS 1 C SG CYS 10 1_555 A ZN 450 E ZN ZN 1_555 A CYS 18 C SG CYS 27 1_555 136.7 A CYS 4 C SG CYS 13 1_555 A ZN 450 E ZN ZN 1_555 A CYS 18 C SG CYS 27 1_555 95.5 A CYS 1 C SG CYS 10 1_555 A ZN 450 E ZN ZN 1_555 A CYS 21 C SG CYS 30 1_555 112.8 A CYS 4 C SG CYS 13 1_555 A ZN 450 E ZN ZN 1_555 A CYS 21 C SG CYS 30 1_555 96.2 A CYS 18 C SG CYS 27 1_555 A ZN 450 E ZN ZN 1_555 A CYS 21 C SG CYS 30 1_555 87.5 A CYS 37 C SG CYS 47 1_555 A ZN 451 F ZN ZN 1_555 A CYS 43 C SG CYS 53 1_555 64.3 A CYS 37 C SG CYS 47 1_555 A ZN 451 F ZN ZN 1_555 A CYS 53 C SG CYS 63 1_555 65.9 A CYS 43 C SG CYS 53 1_555 A ZN 451 F ZN ZN 1_555 A CYS 53 C SG CYS 63 1_555 67.9 A CYS 37 C SG CYS 47 1_555 A ZN 451 F ZN ZN 1_555 A CYS 56 C SG CYS 66 1_555 166.8 A CYS 43 C SG CYS 53 1_555 A ZN 451 F ZN ZN 1_555 A CYS 56 C SG CYS 66 1_555 125.8 A CYS 53 C SG CYS 63 1_555 A ZN 451 F ZN ZN 1_555 A CYS 56 C SG CYS 66 1_555 108.2 B CYS 1 D SG CYS 10 1_555 B ZN 550 G ZN ZN 1_555 B CYS 4 D SG CYS 13 1_555 111.0 B CYS 1 D SG CYS 10 1_555 B ZN 550 G ZN ZN 1_555 B CYS 18 D SG CYS 27 1_555 108.9 B CYS 4 D SG CYS 13 1_555 B ZN 550 G ZN ZN 1_555 B CYS 18 D SG CYS 27 1_555 111.4 B CYS 1 D SG CYS 10 1_555 B ZN 550 G ZN ZN 1_555 B CYS 21 D SG CYS 30 1_555 115.2 B CYS 4 D SG CYS 13 1_555 B ZN 550 G ZN ZN 1_555 B CYS 21 D SG CYS 30 1_555 113.1 B CYS 18 D SG CYS 27 1_555 B ZN 550 G ZN ZN 1_555 B CYS 21 D SG CYS 30 1_555 96.2 B CYS 37 D SG CYS 47 1_555 B ZN 551 H ZN ZN 1_555 B CYS 43 D SG CYS 53 1_555 114.0 B CYS 37 D SG CYS 47 1_555 B ZN 551 H ZN ZN 1_555 B CYS 53 D SG CYS 63 1_555 111.3 B CYS 43 D SG CYS 53 1_555 B ZN 551 H ZN ZN 1_555 B CYS 53 D SG CYS 63 1_555 121.1 B CYS 37 D SG CYS 47 1_555 B ZN 551 H ZN ZN 1_555 B CYS 56 D SG CYS 66 1_555 113.1 B CYS 43 D SG CYS 53 1_555 B ZN 551 H ZN ZN 1_555 B CYS 56 D SG CYS 66 1_555 95.6 B CYS 53 D SG CYS 63 1_555 B ZN 551 H ZN ZN 1_555 B CYS 56 D SG CYS 66 1_555 99.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O HIS 12 C O HIS 21 A N VAL 15 C N VAL 24 B O HIS 12 D O HIS 21 B N VAL 15 D N VAL 24 1 A CG1 VAL -2 C CG1 VAL 7 1 Y 1 A CG2 VAL -2 C CG2 VAL 7 1 Y 1 A CG LEU -1 C CG LEU 8 1 Y 1 A CD1 LEU -1 C CD1 LEU 8 1 Y 1 A CD2 LEU -1 C CD2 LEU 8 1 Y 1 A CG LEU 0 C CG LEU 9 1 Y 1 A CD1 LEU 0 C CD1 LEU 9 1 Y 1 A CD2 LEU 0 C CD2 LEU 9 1 Y 1 A CG GLN 31 C CG GLN 40 1 Y 1 A CD GLN 31 C CD GLN 40 1 Y 1 A OE1 GLN 31 C OE1 GLN 40 1 Y 1 A NE2 GLN 31 C NE2 GLN 40 1 Y 1 A CG ASN 32 C CG ASN 41 1 Y 1 A OD1 ASN 32 C OD1 ASN 41 1 Y 1 A ND2 ASN 32 C ND2 ASN 41 1 Y 1 A CG1 ILE 33 C CG1 ILE 42 1 Y 1 A CG2 ILE 33 C CG2 ILE 42 1 Y 1 A CD1 ILE 33 C CD1 ILE 42 1 Y A 1 A CG GLN 33 C CG GLN 43 1 Y A 1 A CD GLN 33 C CD GLN 43 1 Y A 1 A OE1 GLN 33 C OE1 GLN 43 1 Y A 1 A NE2 GLN 33 C NE2 GLN 43 1 Y 1 A CG LYS 35 C CG LYS 45 1 Y 1 A CD LYS 35 C CD LYS 45 1 Y 1 A CE LYS 35 C CE LYS 45 1 Y 1 A NZ LYS 35 C NZ LYS 45 1 Y 1 A CG ARG 36 C CG ARG 46 1 Y 1 A CD ARG 36 C CD ARG 46 1 Y 1 A NE ARG 36 C NE ARG 46 1 Y 1 A CZ ARG 36 C CZ ARG 46 1 Y 1 A NH1 ARG 36 C NH1 ARG 46 1 Y 1 A NH2 ARG 36 C NH2 ARG 46 1 Y 1 A CG LEU 38 C CG LEU 48 1 Y 1 A CD1 LEU 38 C CD1 LEU 48 1 Y 1 A CD2 LEU 38 C CD2 LEU 48 1 Y 1 A CG LYS 39 C CG LYS 49 1 Y 1 A CD LYS 39 C CD LYS 49 1 Y 1 A CE LYS 39 C CE LYS 49 1 Y 1 A NZ LYS 39 C NZ LYS 49 1 Y 1 A CG ASN 40 C CG ASN 50 1 Y 1 A OD1 ASN 40 C OD1 ASN 50 1 Y 1 A ND2 ASN 40 C ND2 ASN 50 1 Y 1 A CG GLU 41 C CG GLU 51 1 Y 1 A CD GLU 41 C CD GLU 51 1 Y 1 A OE1 GLU 41 C OE1 GLU 51 1 Y 1 A OE2 GLU 41 C OE2 GLU 51 1 Y 1 A CG ASN 42 C CG ASN 52 1 Y 1 A OD1 ASN 42 C OD1 ASN 52 1 Y 1 A ND2 ASN 42 C ND2 ASN 52 1 Y 1 A CG ARG 52 C CG ARG 62 1 Y 1 A CD ARG 52 C CD ARG 62 1 Y 1 A NE ARG 52 C NE ARG 62 1 Y 1 A CZ ARG 52 C CZ ARG 62 1 Y 1 A NH1 ARG 52 C NH1 ARG 62 1 Y 1 A NH2 ARG 52 C NH2 ARG 62 1 Y 1 A CG GLN 55 C CG GLN 65 1 Y 1 A CD GLN 55 C CD GLN 65 1 Y 1 A OE1 GLN 55 C OE1 GLN 65 1 Y 1 A NE2 GLN 55 C NE2 GLN 65 1 Y 1 A CG LYS 59 C CG LYS 69 1 Y 1 A CD LYS 59 C CD LYS 69 1 Y 1 A CE LYS 59 C CE LYS 69 1 Y 1 A NZ LYS 59 C NZ LYS 69 1 Y 1 B CG MET -3 D CG MET 6 1 Y 1 B SD MET -3 D SD MET 6 1 Y 1 B CE MET -3 D CE MET 6 1 Y 1 B CG GLN 30 D CG GLN 39 1 Y 1 B CD GLN 30 D CD GLN 39 1 Y 1 B OE1 GLN 30 D OE1 GLN 39 1 Y 1 B NE2 GLN 30 D NE2 GLN 39 1 Y 1 B CG GLN 31 D CG GLN 40 1 Y 1 B CD GLN 31 D CD GLN 40 1 Y 1 B OE1 GLN 31 D OE1 GLN 40 1 Y 1 B NE2 GLN 31 D NE2 GLN 40 1 Y 1 B CG ASN 32 D CG ASN 41 1 Y 1 B OD1 ASN 32 D OD1 ASN 41 1 Y 1 B ND2 ASN 32 D ND2 ASN 41 1 Y 1 B CG1 ILE 33 D CG1 ILE 42 1 Y 1 B CG2 ILE 33 D CG2 ILE 42 1 Y 1 B CD1 ILE 33 D CD1 ILE 42 1 Y A 1 B CG GLN 33 D CG GLN 43 1 Y A 1 B CD GLN 33 D CD GLN 43 1 Y A 1 B OE1 GLN 33 D OE1 GLN 43 1 Y A 1 B NE2 GLN 33 D NE2 GLN 43 1 Y 1 B CG TYR 34 D CG TYR 44 1 Y 1 B CD1 TYR 34 D CD1 TYR 44 1 Y 1 B CD2 TYR 34 D CD2 TYR 44 1 Y 1 B CE1 TYR 34 D CE1 TYR 44 1 Y 1 B CE2 TYR 34 D CE2 TYR 44 1 Y 1 B CZ TYR 34 D CZ TYR 44 1 Y 1 B OH TYR 34 D OH TYR 44 1 Y 1 B CG LYS 35 D CG LYS 45 1 Y 1 B CD LYS 35 D CD LYS 45 1 Y 1 B CE LYS 35 D CE LYS 45 1 Y 1 B NZ LYS 35 D NZ LYS 45 1 Y 1 B CG ARG 36 D CG ARG 46 1 Y 1 B CD ARG 36 D CD ARG 46 1 Y 1 B NE ARG 36 D NE ARG 46 1 Y 1 B CZ ARG 36 D CZ ARG 46 1 Y 1 B NH1 ARG 36 D NH1 ARG 46 1 Y 1 B NH2 ARG 36 D NH2 ARG 46 1 Y 1 B CG LYS 39 D CG LYS 49 1 Y 1 B CD LYS 39 D CD LYS 49 1 Y 1 B CE LYS 39 D CE LYS 49 1 Y 1 B NZ LYS 39 D NZ LYS 49 1 Y 1 B CG ASN 40 D CG ASN 50 1 Y 1 B OD1 ASN 40 D OD1 ASN 50 1 Y 1 B ND2 ASN 40 D ND2 ASN 50 1 Y 1 B CG GLU 41 D CG GLU 51 1 Y 1 B CD GLU 41 D CD GLU 51 1 Y 1 B OE1 GLU 41 D OE1 GLU 51 1 Y 1 B OE2 GLU 41 D OE2 GLU 51 1 Y 1 B CG ASN 42 D CG ASN 52 1 Y 1 B OD1 ASN 42 D OD1 ASN 52 1 Y 1 B ND2 ASN 42 D ND2 ASN 52 1 Y 1 B CG GLN 55 D CG GLN 65 1 Y 1 B CD GLN 55 D CD GLN 65 1 Y 1 B OE1 GLN 55 D OE1 GLN 65 1 Y 1 B NE2 GLN 55 D NE2 GLN 65 1 Y 1 B CG LYS 59 D CG LYS 69 1 Y 1 B CD LYS 59 D CD LYS 69 1 Y 1 B CE LYS 59 D CE LYS 69 1 Y 1 B NZ LYS 59 D NZ LYS 69 1 Y 1 A THR -8 C THR 1 1 Y 1 A LYS -7 C LYS 2 1 Y 1 A LEU -6 C LEU 3 1 Y 1 A ASN -5 C ASN 4 1 Y 1 A GLY -4 C GLY 5 1 Y 1 A MET -3 C MET 6 1 Y 1 A LYS 78 C LYS 88 1 Y 1 A ARG 79 C ARG 89 1 Y 1 A GLU 80 C GLU 90 1 Y 1 A LYS 81 C LYS 91 1 Y 1 A GLN 82 C GLN 92 1 Y 1 A ARG 83 C ARG 93 1 Y 1 A MET 84 C MET 94 1 Y 1 B THR -8 D THR 1 1 Y 1 B LYS -7 D LYS 2 1 Y 1 B LEU -6 D LEU 3 1 Y 1 B ASN -5 D ASN 4 1 Y 1 B ILE 76 D ILE 86 1 Y 1 B PRO 77 D PRO 87 1 Y 1 B LYS 78 D LYS 88 1 Y 1 B ARG 79 D ARG 89 1 Y 1 B GLU 80 D GLU 90 1 Y 1 B LYS 81 D LYS 91 1 Y 1 B GLN 82 D GLN 92 1 Y 1 B ARG 83 D ARG 93 1 Y 1 B MET 84 D MET 94 1 Y 1 B B O N ASN CYS 42 43 0.84 1 B ASN 42 118.58 1 B B ASN CYS 42 43 -141.69 1 C DC 611 0.065 SIDE CHAIN 1 25.89 2.20 117.20 143.09 B B B CA C N ASN ASN CYS 42 42 43 Y 1 -86.09 1.60 122.70 36.61 B B B O C N ASN ASN CYS 42 42 43 Y 1 32.62 2.50 121.70 154.32 B B B C N CA ASN CYS CYS 42 43 43 Y 1 A LYS 2 -79.71 35.38 1 A VAL 3 -133.87 -52.41 1 A GLN 30 -69.99 12.28 1 A GLN 31 -171.02 90.22 1 A ASN 32 -45.52 0.87 1 A ASN 40 35.29 28.99 1 A GLU 41 32.54 51.58 1 A ASN 42 -142.13 31.89 1 A CYS 43 -56.11 89.76 1 A MET 66 -58.01 108.75 1 B MET -3 -32.88 167.56 1 B LEU -1 -49.59 152.56 1 B GLN 30 -60.01 13.31 1 B ILE 33 -25.71 114.31 1 B ARG 36 -34.70 138.31 1 B ASN 40 46.75 74.83 1 B GLU 41 -17.57 99.18 1 B ASN 42 -168.55 -60.53 1 B CYS 43 -8.77 137.99 1 B ARG 50 -33.48 -36.70 1 B GLN 55 -48.17 -74.58 1 B SER 67 -172.78 146.50 60.81 -39.691 -1.626 -2.807 10.855 -10.126 28.836 Conjugate-gradient minimization against a maximum-likelihood structure factor target. NCS restraints between upstream and downstream monomers and DNA half-sites used throughout refinement. Harmonic restraints used throughout refinement. 0.3103 0.2599 0.2599 0.2599 2.8 18.6 732 6854 6854 96.9 Random 1 anisotropic THROUGHOUT 0.0 0.0 MOLECULAR REPLACEMENT PDB Entry 1A6Y, residues 132-198 from chain A & B, plus DNA Engh & Huber 0.56 0.52 5.0 1.10 1.06 2.8 18.6 9 1987 4 814 1160 0.0165 3.8266 23.2710 1.8505 0.5721 0.5517 2.90 83 97 58.3 2.70 18.62 1HLZ 7671 7671 0.0 0.0 0.09 1 9.0 3.1 97.0 0.44 2.7 2.8 2.1 7691 3.1 92.7 data reduction DENZO data scaling SCALEPACK phasing AMoRE refinement CNS 0.9 CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENT 1 N N 2 N N 3 N N 3 N N 4 N N 4 N N 4 N N 4 N N 5 N N 5 N N 5 N N 5 N N A CYS 18 C CYS 27 HELX_P A GLN 30 C GLN 39 1 1 13 A ASN 49 C ASN 59 HELX_P A ARG 52 C ARG 62 5 2 4 A CYS 53 C CYS 63 HELX_P A GLY 65 C GLY 75 1 3 13 A SER 67 C SER 77 HELX_P A VAL 71 C VAL 81 5 4 5 B CYS 18 D CYS 27 HELX_P B GLN 30 D GLN 39 1 5 13 B CYS 53 D CYS 63 HELX_P B SER 63 D SER 73 1 6 11 B SER 67 D SER 77 HELX_P B VAL 71 D VAL 81 5 7 5 disulf 2.909 A CYS 37 C SG CYS 47 1_555 A CYS 43 C SG CYS 53 1_555 metalc 2.202 A CYS 1 C SG CYS 10 1_555 A ZN 450 E ZN ZN 1_555 metalc 2.661 A CYS 4 C SG CYS 13 1_555 A ZN 450 E ZN ZN 1_555 metalc 2.453 A CYS 18 C SG CYS 27 1_555 A ZN 450 E ZN ZN 1_555 metalc 2.335 A CYS 21 C SG CYS 30 1_555 A ZN 450 E ZN ZN 1_555 metalc 2.956 A CYS 37 C SG CYS 47 1_555 A ZN 451 F ZN ZN 1_555 metalc 2.455 A CYS 43 C SG CYS 53 1_555 A ZN 451 F ZN ZN 1_555 metalc 2.813 A CYS 53 C SG CYS 63 1_555 A ZN 451 F ZN ZN 1_555 metalc 2.339 A CYS 56 C SG CYS 66 1_555 A ZN 451 F ZN ZN 1_555 metalc 2.170 B CYS 1 D SG CYS 10 1_555 B ZN 550 G ZN ZN 1_555 metalc 2.180 B CYS 4 D SG CYS 13 1_555 B ZN 550 G ZN ZN 1_555 metalc 2.364 B CYS 18 D SG CYS 27 1_555 B ZN 550 G ZN ZN 1_555 metalc 1.847 B CYS 21 D SG CYS 30 1_555 B ZN 550 G ZN ZN 1_555 metalc 2.331 B CYS 37 D SG CYS 47 1_555 B ZN 551 H ZN ZN 1_555 metalc 2.263 B CYS 43 D SG CYS 53 1_555 B ZN 551 H ZN ZN 1_555 metalc 2.166 B CYS 53 D SG CYS 63 1_555 B ZN 551 H ZN ZN 1_555 metalc 2.460 B CYS 56 D SG CYS 66 1_555 B ZN 551 H ZN ZN 1_555 hydrog DC-DG PAIR C DC 600 A O2 DC 1 1_555 D DG 640 B N2 DG 20 1_555 hydrog WATSON-CRICK C DA 601 A N1 DA 2 1_555 D DT 639 B N3 DT 19 1_555 hydrog WATSON-CRICK C DA 601 A N6 DA 2 1_555 D DT 639 B O4 DT 19 1_555 hydrog WATSON-CRICK C DC 603 A N3 DC 4 1_555 D DG 637 B N1 DG 17 1_555 hydrog WATSON-CRICK C DC 603 A N4 DC 4 1_555 D DG 637 B O6 DG 17 1_555 hydrog WATSON-CRICK C DC 603 A O2 DC 4 1_555 D DG 637 B N2 DG 17 1_555 hydrog WATSON-CRICK C DT 604 A N3 DT 5 1_555 D DA 636 B N1 DA 16 1_555 hydrog WATSON-CRICK C DT 604 A O4 DT 5 1_555 D DA 636 B N6 DA 16 1_555 hydrog WATSON-CRICK C DA 605 A N1 DA 6 1_555 D DT 635 B N3 DT 15 1_555 hydrog WATSON-CRICK C DA 605 A N6 DA 6 1_555 D DT 635 B O4 DT 15 1_555 hydrog WATSON-CRICK C DG 606 A N1 DG 7 1_555 D DC 634 B N3 DC 14 1_555 hydrog WATSON-CRICK C DG 606 A N2 DG 7 1_555 D DC 634 B O2 DC 14 1_555 hydrog WATSON-CRICK C DG 606 A O6 DG 7 1_555 D DC 634 B N4 DC 14 1_555 hydrog WATSON-CRICK C DG 607 A N1 DG 8 1_555 D DC 633 B N3 DC 13 1_555 hydrog WATSON-CRICK C DG 607 A N2 DG 8 1_555 D DC 633 B O2 DC 13 1_555 hydrog WATSON-CRICK C DG 607 A O6 DG 8 1_555 D DC 633 B N4 DC 13 1_555 hydrog WATSON-CRICK C DT 608 A N3 DT 9 1_555 D DA 632 B N1 DA 12 1_555 hydrog WATSON-CRICK C DT 608 A O4 DT 9 1_555 D DA 632 B N6 DA 12 1_555 hydrog WATSON-CRICK C DC 609 A N3 DC 10 1_555 D DG 631 B N1 DG 11 1_555 hydrog WATSON-CRICK C DC 609 A N4 DC 10 1_555 D DG 631 B O6 DG 11 1_555 hydrog WATSON-CRICK C DC 609 A O2 DC 10 1_555 D DG 631 B N2 DG 11 1_555 hydrog WATSON-CRICK C DA 610 A N1 DA 11 1_555 D DT 630 B N3 DT 10 1_555 hydrog WATSON-CRICK C DA 610 A N6 DA 11 1_555 D DT 630 B O4 DT 10 1_555 hydrog WATSON-CRICK C DC 611 A N3 DC 12 1_555 D DG 629 B N1 DG 9 1_555 hydrog WATSON-CRICK C DC 611 A N4 DC 12 1_555 D DG 629 B O6 DG 9 1_555 hydrog WATSON-CRICK C DC 611 A O2 DC 12 1_555 D DG 629 B N2 DG 9 1_555 hydrog WATSON-CRICK C DT 612 A N3 DT 13 1_555 D DA 628 B N1 DA 8 1_555 hydrog WATSON-CRICK C DT 612 A O4 DT 13 1_555 D DA 628 B N6 DA 8 1_555 hydrog WATSON-CRICK C DA 613 A N1 DA 14 1_555 D DT 627 B N3 DT 7 1_555 hydrog WATSON-CRICK C DA 613 A N6 DA 14 1_555 D DT 627 B O4 DT 7 1_555 hydrog WATSON-CRICK C DG 614 A N1 DG 15 1_555 D DC 626 B N3 DC 6 1_555 hydrog WATSON-CRICK C DG 614 A N2 DG 15 1_555 D DC 626 B O2 DC 6 1_555 hydrog WATSON-CRICK C DG 614 A O6 DG 15 1_555 D DC 626 B N4 DC 6 1_555 hydrog WATSON-CRICK C DG 615 A N1 DG 16 1_555 D DC 625 B N3 DC 5 1_555 hydrog WATSON-CRICK C DG 615 A N2 DG 16 1_555 D DC 625 B O2 DC 5 1_555 hydrog WATSON-CRICK C DG 615 A O6 DG 16 1_555 D DC 625 B N4 DC 5 1_555 hydrog WATSON-CRICK C DT 616 A N3 DT 17 1_555 D DA 624 B N1 DA 4 1_555 hydrog WATSON-CRICK C DT 616 A O4 DT 17 1_555 D DA 624 B N6 DA 4 1_555 hydrog WATSON-CRICK C DC 617 A N3 DC 18 1_555 D DG 623 B N1 DG 3 1_555 hydrog WATSON-CRICK C DC 617 A N4 DC 18 1_555 D DG 623 B O6 DG 3 1_555 hydrog WATSON-CRICK C DC 617 A O2 DC 18 1_555 D DG 623 B N2 DG 3 1_555 hydrog WATSON-CRICK C DA 618 A N1 DA 19 1_555 D DT 622 B N3 DT 2 1_555 hydrog WATSON-CRICK C DA 618 A N6 DA 19 1_555 D DT 622 B O4 DT 2 1_555 hydrog DG-DC PAIR C DG 619 A N2 DG 20 1_555 D DC 621 B O2 DC 1 1_555 TRANSCRIPTION/DNA ORPHAN RECEPTOR, NUCLEAR RECEPTOR, DNA-BINDING, REVERB, REV-ERB, TRANSCRIPTION-DNA COMPLEX NR1D1_HUMAN UNP 3 123 P20393 TKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDA VRFGRIPKREKQRM 1HLZ PDB 1 1HLZ 1HLZ PDB 2 1HLZ 123 216 1HLZ -8 84 P20393 A 1 1 94 123 216 1HLZ -8 84 P20393 B 1 1 94 600 619 1HLZ 600 619 1HLZ C 2 1 20 621 640 1HLZ 621 640 1HLZ D 3 1 20 1 HIS cloning artifact LEU 16 1HLZ A P20393 UNP 147 25 2 HIS cloning artifact LEU 16 1HLZ B P20393 UNP 147 25 2 2 anti-parallel anti-parallel A GLY 10 C GLY 19 A HIS 12 C HIS 21 A VAL 15 C VAL 24 A ALA 17 C ALA 26 B GLY 10 D GLY 19 B HIS 12 D HIS 21 B VAL 15 D VAL 24 B ALA 17 D ALA 26 BINDING SITE FOR RESIDUE ZN A 450 A ZN 450 Software 4 BINDING SITE FOR RESIDUE ZN A 451 A ZN 451 Software 6 BINDING SITE FOR RESIDUE ZN B 550 B ZN 550 Software 4 BINDING SITE FOR RESIDUE ZN B 551 B ZN 551 Software 4 A CYS 1 C CYS 10 4 1_555 A CYS 4 C CYS 13 4 1_555 A CYS 18 C CYS 27 4 1_555 A CYS 21 C CYS 30 4 1_555 A CYS 37 C CYS 47 6 1_555 A GLU 41 C GLU 51 6 1_555 A ASN 42 C ASN 52 6 1_555 A CYS 43 C CYS 53 6 1_555 A CYS 53 C CYS 63 6 1_555 A CYS 56 C CYS 66 6 1_555 B CYS 1 D CYS 10 4 1_555 B CYS 4 D CYS 13 4 1_555 B CYS 18 D CYS 27 4 1_555 B CYS 21 D CYS 30 4 1_555 B CYS 37 D CYS 47 4 1_555 B CYS 43 D CYS 53 4 1_555 B CYS 53 D CYS 63 4 1_555 B CYS 56 D CYS 66 4 1_555 1 P 1