1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Jones, D.N.M.
Searles, M.A.
Shaw, G.L.
Churchill, M.E.A.
Ner, S.S.
Keeler, J.
Travers, A.A.
Neuhaus, D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Structure
STRUE6
2005
0969-2126
2
609
627
10.1016/S0969-2126(00)00063-0
7922039
The solution structure and dynamics of the DNA-binding domain of HMG-D from Drosophila melanogaster.
1994
10.2210/pdb1hma/pdb
pdb_00001hma
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
8370.515
HMG-D
1
man
polymer
no
no
SDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSEWEAKAAKAKDDYDRAVKEFEANG
SDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSEWEAKAAKAKDDYDRAVKEFEANG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
fruit fly
Drosophila
sample
7227
Drosophila melanogaster
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1994-07-31
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
Y
BNL
1994-05-12
REL
20
BRUNGER
refinement
X-PLOR
SER
2
n
1
SER
2
A
ASP
3
n
2
ASP
3
A
LYS
4
n
3
LYS
4
A
PRO
5
n
4
PRO
5
A
LYS
6
n
5
LYS
6
A
ARG
7
n
6
ARG
7
A
PRO
8
n
7
PRO
8
A
LEU
9
n
8
LEU
9
A
SER
10
n
9
SER
10
A
ALA
11
n
10
ALA
11
A
TYR
12
n
11
TYR
12
A
MET
13
n
12
MET
13
A
LEU
14
n
13
LEU
14
A
TRP
15
n
14
TRP
15
A
LEU
16
n
15
LEU
16
A
ASN
17
n
16
ASN
17
A
SER
18
n
17
SER
18
A
ALA
19
n
18
ALA
19
A
ARG
20
n
19
ARG
20
A
GLU
21
n
20
GLU
21
A
SER
22
n
21
SER
22
A
ILE
23
n
22
ILE
23
A
LYS
24
n
23
LYS
24
A
ARG
25
n
24
ARG
25
A
GLU
26
n
25
GLU
26
A
ASN
27
n
26
ASN
27
A
PRO
28
n
27
PRO
28
A
GLY
29
n
28
GLY
29
A
ILE
30
n
29
ILE
30
A
LYS
31
n
30
LYS
31
A
VAL
32
n
31
VAL
32
A
THR
33
n
32
THR
33
A
GLU
34
n
33
GLU
34
A
VAL
35
n
34
VAL
35
A
ALA
36
n
35
ALA
36
A
LYS
37
n
36
LYS
37
A
ARG
38
n
37
ARG
38
A
GLY
39
n
38
GLY
39
A
GLY
40
n
39
GLY
40
A
GLU
41
n
40
GLU
41
A
LEU
42
n
41
LEU
42
A
TRP
43
n
42
TRP
43
A
ARG
44
n
43
ARG
44
A
ALA
45
n
44
ALA
45
A
MET
46
n
45
MET
46
A
LYS
47
n
46
LYS
47
A
ASP
48
n
47
ASP
48
A
LYS
49
n
48
LYS
49
A
SER
50
n
49
SER
50
A
GLU
51
n
50
GLU
51
A
TRP
52
n
51
TRP
52
A
GLU
53
n
52
GLU
53
A
ALA
54
n
53
ALA
54
A
LYS
55
n
54
LYS
55
A
ALA
56
n
55
ALA
56
A
ALA
57
n
56
ALA
57
A
LYS
58
n
57
LYS
58
A
ALA
59
n
58
ALA
59
A
LYS
60
n
59
LYS
60
A
ASP
61
n
60
ASP
61
A
ASP
62
n
61
ASP
62
A
TYR
63
n
62
TYR
63
A
ASP
64
n
63
ASP
64
A
ARG
65
n
64
ARG
65
A
ALA
66
n
65
ALA
66
A
VAL
67
n
66
VAL
67
A
LYS
68
n
67
LYS
68
A
GLU
69
n
68
GLU
69
A
PHE
70
n
69
PHE
70
A
GLU
71
n
70
GLU
71
A
ALA
72
n
71
ALA
72
A
ASN
73
n
72
ASN
73
A
GLY
74
n
73
GLY
74
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
ARG
7
0.121
SIDE CHAIN
1
A
ARG
20
0.292
SIDE CHAIN
1
A
ARG
25
0.117
SIDE CHAIN
1
A
ARG
38
0.299
SIDE CHAIN
1
A
ARG
44
0.309
SIDE CHAIN
1
A
ARG
65
0.306
SIDE CHAIN
2
A
ARG
7
0.281
SIDE CHAIN
2
A
ARG
20
0.310
SIDE CHAIN
2
A
ARG
25
0.314
SIDE CHAIN
2
A
ARG
38
0.218
SIDE CHAIN
2
A
ARG
44
0.124
SIDE CHAIN
2
A
ARG
65
0.236
SIDE CHAIN
3
A
ARG
7
0.318
SIDE CHAIN
3
A
ARG
20
0.238
SIDE CHAIN
3
A
ARG
25
0.244
SIDE CHAIN
3
A
ARG
38
0.294
SIDE CHAIN
3
A
ARG
44
0.317
SIDE CHAIN
3
A
ARG
65
0.313
SIDE CHAIN
4
A
ARG
7
0.231
SIDE CHAIN
4
A
ARG
20
0.246
SIDE CHAIN
4
A
ARG
25
0.314
SIDE CHAIN
4
A
ARG
38
0.122
SIDE CHAIN
4
A
ARG
44
0.177
SIDE CHAIN
4
A
ARG
65
0.314
SIDE CHAIN
5
A
ARG
7
0.135
SIDE CHAIN
5
A
ARG
20
0.316
SIDE CHAIN
5
A
ARG
25
0.160
SIDE CHAIN
5
A
ARG
38
0.294
SIDE CHAIN
5
A
ARG
44
0.317
SIDE CHAIN
5
A
ARG
65
0.239
SIDE CHAIN
6
A
ARG
7
0.312
SIDE CHAIN
6
A
ARG
20
0.281
SIDE CHAIN
6
A
ARG
25
0.178
SIDE CHAIN
6
A
ARG
38
0.216
SIDE CHAIN
6
A
ARG
44
0.303
SIDE CHAIN
6
A
ARG
65
0.317
SIDE CHAIN
7
A
ARG
7
0.143
SIDE CHAIN
7
A
ARG
20
0.244
SIDE CHAIN
7
A
ARG
25
0.267
SIDE CHAIN
7
A
ARG
38
0.297
SIDE CHAIN
7
A
ARG
44
0.312
SIDE CHAIN
7
A
ARG
65
0.237
SIDE CHAIN
8
A
ARG
7
0.308
SIDE CHAIN
8
A
ARG
20
0.194
SIDE CHAIN
8
A
ARG
25
0.184
SIDE CHAIN
8
A
ARG
38
0.267
SIDE CHAIN
8
A
ARG
44
0.313
SIDE CHAIN
8
A
ARG
65
0.275
SIDE CHAIN
9
A
ARG
7
0.124
SIDE CHAIN
9
A
ARG
20
0.212
SIDE CHAIN
9
A
ARG
25
0.257
SIDE CHAIN
9
A
ARG
38
0.194
SIDE CHAIN
9
A
ARG
44
0.305
SIDE CHAIN
10
A
ARG
7
0.160
SIDE CHAIN
10
A
ARG
20
0.148
SIDE CHAIN
10
A
ARG
25
0.316
SIDE CHAIN
10
A
ARG
38
0.313
SIDE CHAIN
10
A
ARG
44
0.197
SIDE CHAIN
10
A
ARG
65
0.318
SIDE CHAIN
11
A
ARG
7
0.180
SIDE CHAIN
11
A
ARG
20
0.284
SIDE CHAIN
11
A
ARG
25
0.256
SIDE CHAIN
11
A
ARG
38
0.162
SIDE CHAIN
11
A
ARG
44
0.305
SIDE CHAIN
11
A
ARG
65
0.294
SIDE CHAIN
12
A
ARG
7
0.276
SIDE CHAIN
12
A
ARG
20
0.235
SIDE CHAIN
12
A
ARG
25
0.288
SIDE CHAIN
12
A
ARG
38
0.275
SIDE CHAIN
12
A
ARG
65
0.286
SIDE CHAIN
13
A
ARG
7
0.210
SIDE CHAIN
13
A
ARG
20
0.228
SIDE CHAIN
13
A
ARG
25
0.317
SIDE CHAIN
13
A
ARG
38
0.302
SIDE CHAIN
13
A
ARG
44
0.252
SIDE CHAIN
13
A
ARG
65
0.317
SIDE CHAIN
14
A
ARG
7
0.253
SIDE CHAIN
14
A
ARG
20
0.311
SIDE CHAIN
14
A
ARG
25
0.277
SIDE CHAIN
14
A
ARG
38
0.309
SIDE CHAIN
14
A
ARG
65
0.314
SIDE CHAIN
15
A
ARG
7
0.278
SIDE CHAIN
15
A
ARG
20
0.294
SIDE CHAIN
15
A
ARG
25
0.196
SIDE CHAIN
15
A
ARG
38
0.303
SIDE CHAIN
15
A
ARG
44
0.292
SIDE CHAIN
15
A
ARG
65
0.207
SIDE CHAIN
16
A
ARG
7
0.110
SIDE CHAIN
16
A
ARG
20
0.265
SIDE CHAIN
16
A
ARG
25
0.315
SIDE CHAIN
16
A
ARG
38
0.176
SIDE CHAIN
16
A
ARG
44
0.317
SIDE CHAIN
17
A
ARG
7
0.291
SIDE CHAIN
17
A
ARG
20
0.119
SIDE CHAIN
17
A
ARG
25
0.147
SIDE CHAIN
17
A
ARG
38
0.311
SIDE CHAIN
17
A
ARG
44
0.313
SIDE CHAIN
17
A
ARG
65
0.156
SIDE CHAIN
18
A
ARG
7
0.308
SIDE CHAIN
18
A
ARG
20
0.162
SIDE CHAIN
18
A
ARG
25
0.101
SIDE CHAIN
18
A
ARG
38
0.202
SIDE CHAIN
18
A
ARG
44
0.273
SIDE CHAIN
18
A
ARG
65
0.297
SIDE CHAIN
19
A
ARG
7
0.316
SIDE CHAIN
19
A
ARG
20
0.295
SIDE CHAIN
19
A
ARG
25
0.221
SIDE CHAIN
19
A
ARG
38
0.163
SIDE CHAIN
19
A
ARG
44
0.270
SIDE CHAIN
19
A
ARG
65
0.315
SIDE CHAIN
20
A
ARG
7
0.288
SIDE CHAIN
20
A
ARG
20
0.313
SIDE CHAIN
20
A
ARG
25
0.210
SIDE CHAIN
20
A
ARG
38
0.297
SIDE CHAIN
20
A
ARG
44
0.203
SIDE CHAIN
20
A
ARG
65
0.210
SIDE CHAIN
1
A
LYS
6
-68.21
90.35
1
A
ILE
30
-36.38
148.32
1
A
MET
46
-83.60
-113.51
1
A
LYS
47
-105.93
-78.54
1
A
ALA
72
-87.85
31.45
2
A
ASP
3
-164.40
-158.68
2
A
ARG
7
-46.66
152.74
2
A
SER
10
-44.76
153.55
2
A
ILE
30
-40.11
155.81
2
A
MET
46
-82.47
-113.10
2
A
LYS
47
-109.31
-82.40
3
A
ASP
3
-145.48
-147.51
3
A
ILE
30
-36.30
149.05
3
A
GLU
41
-92.91
-62.41
3
A
MET
46
-83.39
-114.35
3
A
LYS
47
-102.63
-90.73
3
A
ALA
72
-83.91
47.27
3
A
ASN
73
-148.25
-59.88
4
A
ILE
30
-38.16
149.80
4
A
MET
46
-32.02
-33.72
4
A
LYS
47
22.64
-76.64
5
A
ASP
3
55.86
-94.26
5
A
ARG
7
-15.28
117.33
5
A
LEU
9
178.81
-177.52
5
A
GLU
21
-79.14
-71.84
5
A
ARG
25
-82.32
-72.12
5
A
ILE
30
-37.16
152.64
5
A
MET
46
-69.60
-104.89
5
A
LYS
47
-123.85
-79.09
6
A
ASP
3
-179.00
-48.90
6
A
ARG
25
-95.16
-65.94
6
A
ILE
30
-37.63
153.48
6
A
MET
46
-31.39
-34.32
6
A
LYS
47
23.86
-78.39
6
A
GLU
53
-27.81
-43.63
7
A
ARG
7
-23.07
116.65
7
A
SER
10
-42.76
152.03
7
A
ILE
30
-40.07
153.15
7
A
MET
46
-62.76
-108.99
7
A
LYS
47
-123.15
-90.54
8
A
ASP
3
-119.26
-79.77
8
A
ILE
30
-38.16
148.25
8
A
MET
46
-68.67
-105.35
8
A
LYS
47
-123.67
-84.64
9
A
ILE
30
-39.00
161.01
9
A
MET
46
-63.10
-104.32
9
A
LYS
47
-128.51
-69.60
10
A
ASP
3
-92.89
-93.64
10
A
ARG
7
-4.15
124.65
10
A
ILE
30
-40.39
152.50
10
A
MET
46
-73.81
-107.99
10
A
LYS
47
-121.51
-65.07
10
A
ALA
72
-88.91
48.48
11
A
ASP
3
-94.37
-88.23
11
A
LEU
9
179.72
179.94
11
A
ARG
25
-79.99
-70.15
11
A
ILE
30
-38.63
148.58
11
A
MET
46
-82.31
-127.22
11
A
LYS
47
-108.00
-75.73
12
A
ASP
3
-81.72
-142.04
12
A
ARG
7
-23.83
114.68
12
A
ILE
30
-38.87
147.97
12
A
MET
46
-78.53
-126.38
12
A
LYS
47
-108.95
-71.08
12
A
ALA
72
-84.97
49.40
13
A
ARG
7
-8.76
122.31
13
A
ILE
30
-38.05
151.42
13
A
MET
46
-31.40
-33.72
13
A
LYS
47
21.05
-75.48
13
A
GLU
53
-35.59
-37.62
14
A
ASP
3
77.27
155.49
14
A
LYS
6
-58.41
87.54
14
A
ARG
7
-34.40
113.25
14
A
ARG
25
-88.18
-78.10
14
A
ILE
30
-36.77
151.78
14
A
MET
46
-79.81
-111.39
14
A
LYS
47
-106.77
-75.62
14
A
GLU
51
-64.61
-70.61
15
A
ASP
3
-99.90
-63.11
15
A
ARG
7
-10.20
118.78
15
A
LEU
9
177.29
-177.91
15
A
ILE
30
-34.98
145.32
15
A
MET
46
-76.24
-111.30
15
A
LYS
47
-103.87
-79.50
16
A
LYS
6
-68.38
85.26
16
A
ARG
7
-25.61
113.85
16
A
PRO
28
-73.68
-145.27
16
A
ILE
30
-37.50
151.21
16
A
MET
46
-80.28
-112.03
16
A
LYS
47
-109.33
-87.03
16
A
GLU
51
-68.51
-71.40
16
A
ASN
73
-103.28
47.98
17
A
ASP
3
62.62
163.02
17
A
ILE
30
-37.94
153.83
17
A
MET
46
-31.52
-34.10
17
A
LYS
47
22.64
-80.55
18
A
ASP
3
-128.97
-61.44
18
A
ARG
25
-81.50
-73.39
18
A
ILE
30
-35.78
149.66
18
A
MET
46
-96.02
-120.34
18
A
GLU
53
-59.30
-71.73
19
A
ARG
7
-31.19
120.28
19
A
ILE
30
-37.93
158.36
19
A
MET
46
-81.57
-114.52
19
A
LYS
47
-113.07
-84.60
20
A
ARG
7
-5.11
126.72
20
A
LEU
9
-47.01
166.51
20
A
ILE
30
-38.08
147.60
20
A
MET
46
-72.58
-107.35
20
A
LYS
47
-124.88
-80.54
20
A
GLU
51
-66.45
-71.34
20
A
TYR
63
-84.33
-75.99
model building
X-PLOR
refinement
X-PLOR
phasing
X-PLOR
THE SOLUTION STRUCTURE AND DYNAMICS OF THE DNA BINDING DOMAIN OF HMG-D FROM DROSOPHILA MELANOGASTER
1
Y
N
A
ALA
11
A
ALA
10
HELX_P
~60 DEG BEND CENTRED @ ALA 19
A
ASN
27
A
ASN
26
1
I
17
A
THR
33
A
THR
32
HELX_P
A
MET
46
A
MET
45
1
II
14
A
LYS
49
A
LYS
48
HELX_P
A
ASN
73
A
ASN
72
1
III
25
DNA-BINDING
DNA-BINDING
HMGD_DROME
UNP
1
1
Q05783
MSDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSEWEAKAAKAKDDYDRAVKEFEANGGSSAAN
GGGAKKRAKPAKKVAKKSKKEESDEDDDDESE
2
74
1HMA
2
74
Q05783
A
1
1
73
1
P 1