1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Jones, D.N.M. Searles, M.A. Shaw, G.L. Churchill, M.E.A. Ner, S.S. Keeler, J. Travers, A.A. Neuhaus, D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Structure STRUE6 2005 0969-2126 2 609 627 10.1016/S0969-2126(00)00063-0 7922039 The solution structure and dynamics of the DNA-binding domain of HMG-D from Drosophila melanogaster. 1994 10.2210/pdb1hma/pdb pdb_00001hma 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 8370.515 HMG-D 1 man polymer no no SDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSEWEAKAAKAKDDYDRAVKEFEANG SDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSEWEAKAAKAKDDYDRAVKEFEANG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n fruit fly Drosophila sample 7227 Drosophila melanogaster database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Database references Derived calculations Other 1 0 1994-07-31 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site Y BNL 1994-05-12 REL 20 BRUNGER refinement X-PLOR SER 2 n 1 SER 2 A ASP 3 n 2 ASP 3 A LYS 4 n 3 LYS 4 A PRO 5 n 4 PRO 5 A LYS 6 n 5 LYS 6 A ARG 7 n 6 ARG 7 A PRO 8 n 7 PRO 8 A LEU 9 n 8 LEU 9 A SER 10 n 9 SER 10 A ALA 11 n 10 ALA 11 A TYR 12 n 11 TYR 12 A MET 13 n 12 MET 13 A LEU 14 n 13 LEU 14 A TRP 15 n 14 TRP 15 A LEU 16 n 15 LEU 16 A ASN 17 n 16 ASN 17 A SER 18 n 17 SER 18 A ALA 19 n 18 ALA 19 A ARG 20 n 19 ARG 20 A GLU 21 n 20 GLU 21 A SER 22 n 21 SER 22 A ILE 23 n 22 ILE 23 A LYS 24 n 23 LYS 24 A ARG 25 n 24 ARG 25 A GLU 26 n 25 GLU 26 A ASN 27 n 26 ASN 27 A PRO 28 n 27 PRO 28 A GLY 29 n 28 GLY 29 A ILE 30 n 29 ILE 30 A LYS 31 n 30 LYS 31 A VAL 32 n 31 VAL 32 A THR 33 n 32 THR 33 A GLU 34 n 33 GLU 34 A VAL 35 n 34 VAL 35 A ALA 36 n 35 ALA 36 A LYS 37 n 36 LYS 37 A ARG 38 n 37 ARG 38 A GLY 39 n 38 GLY 39 A GLY 40 n 39 GLY 40 A GLU 41 n 40 GLU 41 A LEU 42 n 41 LEU 42 A TRP 43 n 42 TRP 43 A ARG 44 n 43 ARG 44 A ALA 45 n 44 ALA 45 A MET 46 n 45 MET 46 A LYS 47 n 46 LYS 47 A ASP 48 n 47 ASP 48 A LYS 49 n 48 LYS 49 A SER 50 n 49 SER 50 A GLU 51 n 50 GLU 51 A TRP 52 n 51 TRP 52 A GLU 53 n 52 GLU 53 A ALA 54 n 53 ALA 54 A LYS 55 n 54 LYS 55 A ALA 56 n 55 ALA 56 A ALA 57 n 56 ALA 57 A LYS 58 n 57 LYS 58 A ALA 59 n 58 ALA 59 A LYS 60 n 59 LYS 60 A ASP 61 n 60 ASP 61 A ASP 62 n 61 ASP 62 A TYR 63 n 62 TYR 63 A ASP 64 n 63 ASP 64 A ARG 65 n 64 ARG 65 A ALA 66 n 65 ALA 66 A VAL 67 n 66 VAL 67 A LYS 68 n 67 LYS 68 A GLU 69 n 68 GLU 69 A PHE 70 n 69 PHE 70 A GLU 71 n 70 GLU 71 A ALA 72 n 71 ALA 72 A ASN 73 n 72 ASN 73 A GLY 74 n 73 GLY 74 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A ARG 7 0.121 SIDE CHAIN 1 A ARG 20 0.292 SIDE CHAIN 1 A ARG 25 0.117 SIDE CHAIN 1 A ARG 38 0.299 SIDE CHAIN 1 A ARG 44 0.309 SIDE CHAIN 1 A ARG 65 0.306 SIDE CHAIN 2 A ARG 7 0.281 SIDE CHAIN 2 A ARG 20 0.310 SIDE CHAIN 2 A ARG 25 0.314 SIDE CHAIN 2 A ARG 38 0.218 SIDE CHAIN 2 A ARG 44 0.124 SIDE CHAIN 2 A ARG 65 0.236 SIDE CHAIN 3 A ARG 7 0.318 SIDE CHAIN 3 A ARG 20 0.238 SIDE CHAIN 3 A ARG 25 0.244 SIDE CHAIN 3 A ARG 38 0.294 SIDE CHAIN 3 A ARG 44 0.317 SIDE CHAIN 3 A ARG 65 0.313 SIDE CHAIN 4 A ARG 7 0.231 SIDE CHAIN 4 A ARG 20 0.246 SIDE CHAIN 4 A ARG 25 0.314 SIDE CHAIN 4 A ARG 38 0.122 SIDE CHAIN 4 A ARG 44 0.177 SIDE CHAIN 4 A ARG 65 0.314 SIDE CHAIN 5 A ARG 7 0.135 SIDE CHAIN 5 A ARG 20 0.316 SIDE CHAIN 5 A ARG 25 0.160 SIDE CHAIN 5 A ARG 38 0.294 SIDE CHAIN 5 A ARG 44 0.317 SIDE CHAIN 5 A ARG 65 0.239 SIDE CHAIN 6 A ARG 7 0.312 SIDE CHAIN 6 A ARG 20 0.281 SIDE CHAIN 6 A ARG 25 0.178 SIDE CHAIN 6 A ARG 38 0.216 SIDE CHAIN 6 A ARG 44 0.303 SIDE CHAIN 6 A ARG 65 0.317 SIDE CHAIN 7 A ARG 7 0.143 SIDE CHAIN 7 A ARG 20 0.244 SIDE CHAIN 7 A ARG 25 0.267 SIDE CHAIN 7 A ARG 38 0.297 SIDE CHAIN 7 A ARG 44 0.312 SIDE CHAIN 7 A ARG 65 0.237 SIDE CHAIN 8 A ARG 7 0.308 SIDE CHAIN 8 A ARG 20 0.194 SIDE CHAIN 8 A ARG 25 0.184 SIDE CHAIN 8 A ARG 38 0.267 SIDE CHAIN 8 A ARG 44 0.313 SIDE CHAIN 8 A ARG 65 0.275 SIDE CHAIN 9 A ARG 7 0.124 SIDE CHAIN 9 A ARG 20 0.212 SIDE CHAIN 9 A ARG 25 0.257 SIDE CHAIN 9 A ARG 38 0.194 SIDE CHAIN 9 A ARG 44 0.305 SIDE CHAIN 10 A ARG 7 0.160 SIDE CHAIN 10 A ARG 20 0.148 SIDE CHAIN 10 A ARG 25 0.316 SIDE CHAIN 10 A ARG 38 0.313 SIDE CHAIN 10 A ARG 44 0.197 SIDE CHAIN 10 A ARG 65 0.318 SIDE CHAIN 11 A ARG 7 0.180 SIDE CHAIN 11 A ARG 20 0.284 SIDE CHAIN 11 A ARG 25 0.256 SIDE CHAIN 11 A ARG 38 0.162 SIDE CHAIN 11 A ARG 44 0.305 SIDE CHAIN 11 A ARG 65 0.294 SIDE CHAIN 12 A ARG 7 0.276 SIDE CHAIN 12 A ARG 20 0.235 SIDE CHAIN 12 A ARG 25 0.288 SIDE CHAIN 12 A ARG 38 0.275 SIDE CHAIN 12 A ARG 65 0.286 SIDE CHAIN 13 A ARG 7 0.210 SIDE CHAIN 13 A ARG 20 0.228 SIDE CHAIN 13 A ARG 25 0.317 SIDE CHAIN 13 A ARG 38 0.302 SIDE CHAIN 13 A ARG 44 0.252 SIDE CHAIN 13 A ARG 65 0.317 SIDE CHAIN 14 A ARG 7 0.253 SIDE CHAIN 14 A ARG 20 0.311 SIDE CHAIN 14 A ARG 25 0.277 SIDE CHAIN 14 A ARG 38 0.309 SIDE CHAIN 14 A ARG 65 0.314 SIDE CHAIN 15 A ARG 7 0.278 SIDE CHAIN 15 A ARG 20 0.294 SIDE CHAIN 15 A ARG 25 0.196 SIDE CHAIN 15 A ARG 38 0.303 SIDE CHAIN 15 A ARG 44 0.292 SIDE CHAIN 15 A ARG 65 0.207 SIDE CHAIN 16 A ARG 7 0.110 SIDE CHAIN 16 A ARG 20 0.265 SIDE CHAIN 16 A ARG 25 0.315 SIDE CHAIN 16 A ARG 38 0.176 SIDE CHAIN 16 A ARG 44 0.317 SIDE CHAIN 17 A ARG 7 0.291 SIDE CHAIN 17 A ARG 20 0.119 SIDE CHAIN 17 A ARG 25 0.147 SIDE CHAIN 17 A ARG 38 0.311 SIDE CHAIN 17 A ARG 44 0.313 SIDE CHAIN 17 A ARG 65 0.156 SIDE CHAIN 18 A ARG 7 0.308 SIDE CHAIN 18 A ARG 20 0.162 SIDE CHAIN 18 A ARG 25 0.101 SIDE CHAIN 18 A ARG 38 0.202 SIDE CHAIN 18 A ARG 44 0.273 SIDE CHAIN 18 A ARG 65 0.297 SIDE CHAIN 19 A ARG 7 0.316 SIDE CHAIN 19 A ARG 20 0.295 SIDE CHAIN 19 A ARG 25 0.221 SIDE CHAIN 19 A ARG 38 0.163 SIDE CHAIN 19 A ARG 44 0.270 SIDE CHAIN 19 A ARG 65 0.315 SIDE CHAIN 20 A ARG 7 0.288 SIDE CHAIN 20 A ARG 20 0.313 SIDE CHAIN 20 A ARG 25 0.210 SIDE CHAIN 20 A ARG 38 0.297 SIDE CHAIN 20 A ARG 44 0.203 SIDE CHAIN 20 A ARG 65 0.210 SIDE CHAIN 1 A LYS 6 -68.21 90.35 1 A ILE 30 -36.38 148.32 1 A MET 46 -83.60 -113.51 1 A LYS 47 -105.93 -78.54 1 A ALA 72 -87.85 31.45 2 A ASP 3 -164.40 -158.68 2 A ARG 7 -46.66 152.74 2 A SER 10 -44.76 153.55 2 A ILE 30 -40.11 155.81 2 A MET 46 -82.47 -113.10 2 A LYS 47 -109.31 -82.40 3 A ASP 3 -145.48 -147.51 3 A ILE 30 -36.30 149.05 3 A GLU 41 -92.91 -62.41 3 A MET 46 -83.39 -114.35 3 A LYS 47 -102.63 -90.73 3 A ALA 72 -83.91 47.27 3 A ASN 73 -148.25 -59.88 4 A ILE 30 -38.16 149.80 4 A MET 46 -32.02 -33.72 4 A LYS 47 22.64 -76.64 5 A ASP 3 55.86 -94.26 5 A ARG 7 -15.28 117.33 5 A LEU 9 178.81 -177.52 5 A GLU 21 -79.14 -71.84 5 A ARG 25 -82.32 -72.12 5 A ILE 30 -37.16 152.64 5 A MET 46 -69.60 -104.89 5 A LYS 47 -123.85 -79.09 6 A ASP 3 -179.00 -48.90 6 A ARG 25 -95.16 -65.94 6 A ILE 30 -37.63 153.48 6 A MET 46 -31.39 -34.32 6 A LYS 47 23.86 -78.39 6 A GLU 53 -27.81 -43.63 7 A ARG 7 -23.07 116.65 7 A SER 10 -42.76 152.03 7 A ILE 30 -40.07 153.15 7 A MET 46 -62.76 -108.99 7 A LYS 47 -123.15 -90.54 8 A ASP 3 -119.26 -79.77 8 A ILE 30 -38.16 148.25 8 A MET 46 -68.67 -105.35 8 A LYS 47 -123.67 -84.64 9 A ILE 30 -39.00 161.01 9 A MET 46 -63.10 -104.32 9 A LYS 47 -128.51 -69.60 10 A ASP 3 -92.89 -93.64 10 A ARG 7 -4.15 124.65 10 A ILE 30 -40.39 152.50 10 A MET 46 -73.81 -107.99 10 A LYS 47 -121.51 -65.07 10 A ALA 72 -88.91 48.48 11 A ASP 3 -94.37 -88.23 11 A LEU 9 179.72 179.94 11 A ARG 25 -79.99 -70.15 11 A ILE 30 -38.63 148.58 11 A MET 46 -82.31 -127.22 11 A LYS 47 -108.00 -75.73 12 A ASP 3 -81.72 -142.04 12 A ARG 7 -23.83 114.68 12 A ILE 30 -38.87 147.97 12 A MET 46 -78.53 -126.38 12 A LYS 47 -108.95 -71.08 12 A ALA 72 -84.97 49.40 13 A ARG 7 -8.76 122.31 13 A ILE 30 -38.05 151.42 13 A MET 46 -31.40 -33.72 13 A LYS 47 21.05 -75.48 13 A GLU 53 -35.59 -37.62 14 A ASP 3 77.27 155.49 14 A LYS 6 -58.41 87.54 14 A ARG 7 -34.40 113.25 14 A ARG 25 -88.18 -78.10 14 A ILE 30 -36.77 151.78 14 A MET 46 -79.81 -111.39 14 A LYS 47 -106.77 -75.62 14 A GLU 51 -64.61 -70.61 15 A ASP 3 -99.90 -63.11 15 A ARG 7 -10.20 118.78 15 A LEU 9 177.29 -177.91 15 A ILE 30 -34.98 145.32 15 A MET 46 -76.24 -111.30 15 A LYS 47 -103.87 -79.50 16 A LYS 6 -68.38 85.26 16 A ARG 7 -25.61 113.85 16 A PRO 28 -73.68 -145.27 16 A ILE 30 -37.50 151.21 16 A MET 46 -80.28 -112.03 16 A LYS 47 -109.33 -87.03 16 A GLU 51 -68.51 -71.40 16 A ASN 73 -103.28 47.98 17 A ASP 3 62.62 163.02 17 A ILE 30 -37.94 153.83 17 A MET 46 -31.52 -34.10 17 A LYS 47 22.64 -80.55 18 A ASP 3 -128.97 -61.44 18 A ARG 25 -81.50 -73.39 18 A ILE 30 -35.78 149.66 18 A MET 46 -96.02 -120.34 18 A GLU 53 -59.30 -71.73 19 A ARG 7 -31.19 120.28 19 A ILE 30 -37.93 158.36 19 A MET 46 -81.57 -114.52 19 A LYS 47 -113.07 -84.60 20 A ARG 7 -5.11 126.72 20 A LEU 9 -47.01 166.51 20 A ILE 30 -38.08 147.60 20 A MET 46 -72.58 -107.35 20 A LYS 47 -124.88 -80.54 20 A GLU 51 -66.45 -71.34 20 A TYR 63 -84.33 -75.99 model building X-PLOR refinement X-PLOR phasing X-PLOR THE SOLUTION STRUCTURE AND DYNAMICS OF THE DNA BINDING DOMAIN OF HMG-D FROM DROSOPHILA MELANOGASTER 1 Y N A ALA 11 A ALA 10 HELX_P ~60 DEG BEND CENTRED @ ALA 19 A ASN 27 A ASN 26 1 I 17 A THR 33 A THR 32 HELX_P A MET 46 A MET 45 1 II 14 A LYS 49 A LYS 48 HELX_P A ASN 73 A ASN 72 1 III 25 DNA-BINDING DNA-BINDING HMGD_DROME UNP 1 1 Q05783 MSDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSEWEAKAAKAKDDYDRAVKEFEANGGSSAAN GGGAKKRAKPAKKVAKKSKKEESDEDDDDESE 2 74 1HMA 2 74 Q05783 A 1 1 73 1 P 1