1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Weir, H.M.
Kraulis, P.J.
Hill, C.S.
Raine, A.R.C.
Laue, E.D.
Thomas, J.O.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
EMBO J.
EMJODG
0897
0261-4189
12
1311
1319
8467791
Structure of the HMG box motif in the B-domain of HMG1.
1993
10.2210/pdb1hmf/pdb
pdb_00001hmf
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
8791.117
HIGH MOBILITY GROUP PROTEIN FRAGMENT-B
1
man
polymer
no
no
FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK
FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Norway rat
Rattus
sample
10116
Rattus norvegicus
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1994-05-31
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
Y
BNL
1994-03-07
REL
30
BRUNGER
refinement
X-PLOR
2.1
PHE
1
n
1
PHE
1
A
LYS
2
n
2
LYS
2
A
ASP
3
n
3
ASP
3
A
PRO
4
n
4
PRO
4
A
ASN
5
n
5
ASN
5
A
ALA
6
n
6
ALA
6
A
PRO
7
n
7
PRO
7
A
LYS
8
n
8
LYS
8
A
ARG
9
n
9
ARG
9
A
PRO
10
n
10
PRO
10
A
PRO
11
n
11
PRO
11
A
SER
12
n
12
SER
12
A
ALA
13
n
13
ALA
13
A
PHE
14
n
14
PHE
14
A
PHE
15
n
15
PHE
15
A
LEU
16
n
16
LEU
16
A
PHE
17
n
17
PHE
17
A
CYS
18
n
18
CYS
18
A
SER
19
n
19
SER
19
A
GLU
20
n
20
GLU
20
A
TYR
21
n
21
TYR
21
A
ARG
22
n
22
ARG
22
A
PRO
23
n
23
PRO
23
A
LYS
24
n
24
LYS
24
A
ILE
25
n
25
ILE
25
A
LYS
26
n
26
LYS
26
A
GLY
27
n
27
GLY
27
A
GLU
28
n
28
GLU
28
A
HIS
29
n
29
HIS
29
A
PRO
30
n
30
PRO
30
A
GLY
31
n
31
GLY
31
A
LEU
32
n
32
LEU
32
A
SER
33
n
33
SER
33
A
ILE
34
n
34
ILE
34
A
GLY
35
n
35
GLY
35
A
ASP
36
n
36
ASP
36
A
VAL
37
n
37
VAL
37
A
ALA
38
n
38
ALA
38
A
LYS
39
n
39
LYS
39
A
LYS
40
n
40
LYS
40
A
LEU
41
n
41
LEU
41
A
GLY
42
n
42
GLY
42
A
GLU
43
n
43
GLU
43
A
MET
44
n
44
MET
44
A
TRP
45
n
45
TRP
45
A
ASN
46
n
46
ASN
46
A
ASN
47
n
47
ASN
47
A
THR
48
n
48
THR
48
A
ALA
49
n
49
ALA
49
A
ALA
50
n
50
ALA
50
A
ASP
51
n
51
ASP
51
A
ASP
52
n
52
ASP
52
A
LYS
53
n
53
LYS
53
A
GLN
54
n
54
GLN
54
A
PRO
55
n
55
PRO
55
A
TYR
56
n
56
TYR
56
A
GLU
57
n
57
GLU
57
A
LYS
58
n
58
LYS
58
A
LYS
59
n
59
LYS
59
A
ALA
60
n
60
ALA
60
A
ALA
61
n
61
ALA
61
A
LYS
62
n
62
LYS
62
A
LEU
63
n
63
LEU
63
A
LYS
64
n
64
LYS
64
A
GLU
65
n
65
GLU
65
A
LYS
66
n
66
LYS
66
A
TYR
67
n
67
TYR
67
A
GLU
68
n
68
GLU
68
A
LYS
69
n
69
LYS
69
A
ASP
70
n
70
ASP
70
A
ILE
71
n
71
ILE
71
A
ALA
72
n
72
ALA
72
A
ALA
73
n
73
ALA
73
A
TYR
74
n
74
TYR
74
A
ARG
75
n
75
ARG
75
A
ALA
76
n
76
ALA
76
A
LYS
77
n
77
LYS
77
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
5
A
A
HH11
HH
ARG
TYR
9
67
1.29
10
A
A
HH
HH21
TYR
ARG
67
75
1.27
28
A
A
HZ3
H
LYS
LEU
26
32
1.27
2
A
TYR
67
0.062
SIDE CHAIN
13
A
ARG
9
0.185
SIDE CHAIN
13
A
ARG
22
0.291
SIDE CHAIN
13
A
ARG
75
0.291
SIDE CHAIN
14
A
ARG
9
0.289
SIDE CHAIN
14
A
ARG
22
0.315
SIDE CHAIN
14
A
ARG
75
0.194
SIDE CHAIN
15
A
ARG
9
0.121
SIDE CHAIN
15
A
ARG
22
0.229
SIDE CHAIN
15
A
ARG
75
0.112
SIDE CHAIN
18
A
TYR
74
0.065
SIDE CHAIN
1
-6.06
1.00
110.10
104.04
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
45
45
45
N
1
5.40
0.90
109.00
114.40
A
A
A
CD1
NE1
CE2
TRP
TRP
TRP
45
45
45
N
1
8.94
1.10
130.40
139.34
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
45
45
45
N
1
-7.12
1.00
107.30
100.18
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
45
45
45
N
2
5.02
0.80
106.30
111.32
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
45
45
45
N
2
-6.35
1.00
110.10
103.75
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
45
45
45
N
2
9.63
1.10
130.40
140.03
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
45
45
45
N
2
-7.30
1.00
107.30
100.00
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
45
45
45
N
3
-6.05
1.00
110.10
104.05
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
45
45
45
N
3
9.12
1.10
130.40
139.52
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
45
45
45
N
3
-7.25
1.00
107.30
100.05
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
45
45
45
N
4
-6.19
1.00
110.10
103.91
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
45
45
45
N
4
9.24
1.10
130.40
139.64
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
45
45
45
N
4
-7.17
1.00
107.30
100.13
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
45
45
45
N
5
4.85
0.80
106.30
111.15
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
45
45
45
N
5
-6.32
1.00
110.10
103.78
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
45
45
45
N
5
9.84
1.10
130.40
140.24
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
45
45
45
N
5
-7.50
1.00
107.30
99.80
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
45
45
45
N
6
5.02
0.80
106.30
111.32
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
45
45
45
N
6
-6.34
1.00
110.10
103.76
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
45
45
45
N
6
10.13
1.10
130.40
140.53
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
45
45
45
N
6
-7.70
1.00
107.30
99.60
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
45
45
45
N
7
-6.15
1.00
110.10
103.95
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
45
45
45
N
7
9.58
1.10
130.40
139.98
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
45
45
45
N
7
-7.39
1.00
107.30
99.91
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
45
45
45
N
8
-6.10
1.00
110.10
104.00
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
45
45
45
N
8
9.56
1.10
130.40
139.96
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
45
45
45
N
8
-7.31
1.00
107.30
99.99
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
45
45
45
N
9
-6.13
1.00
110.10
103.97
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
45
45
45
N
9
10.09
1.10
130.40
140.49
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
45
45
45
N
9
-7.71
1.00
107.30
99.59
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
45
45
45
N
9
-5.50
0.90
133.90
128.40
A
A
A
CG
CD2
CE3
TRP
TRP
TRP
45
45
45
N
10
4.99
0.80
106.30
111.29
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
45
45
45
N
10
-6.32
1.00
110.10
103.78
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
45
45
45
N
10
9.85
1.10
130.40
140.25
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
45
45
45
N
10
-7.47
1.00
107.30
99.83
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
45
45
45
N
11
-6.18
1.00
110.10
103.92
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
45
45
45
N
11
9.43
1.10
130.40
139.83
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
45
45
45
N
11
-7.32
1.00
107.30
99.98
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
45
45
45
N
12
-6.05
1.00
110.10
104.05
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
45
45
45
N
12
9.28
1.10
130.40
139.68
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
45
45
45
N
12
-7.29
1.00
107.30
100.01
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
45
45
45
N
13
4.92
0.80
106.30
111.22
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
45
45
45
N
13
-6.34
1.00
110.10
103.76
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
45
45
45
N
13
9.75
1.10
130.40
140.15
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
45
45
45
N
13
-7.54
1.00
107.30
99.76
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
45
45
45
N
14
4.81
0.80
106.30
111.11
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
45
45
45
N
14
-6.18
1.00
110.10
103.92
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
45
45
45
N
14
9.54
1.10
130.40
139.94
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
45
45
45
N
14
-7.40
1.00
107.30
99.90
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
45
45
45
N
14
-3.70
0.60
121.00
117.30
A
A
A
CB
CG
CD2
TYR
TYR
TYR
74
74
74
N
15
4.83
0.80
106.30
111.13
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
45
45
45
N
15
-6.10
1.00
110.10
104.00
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
45
45
45
N
15
9.56
1.10
130.40
139.96
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
45
45
45
N
15
-7.39
1.00
107.30
99.91
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
45
45
45
N
15
-3.76
0.60
121.00
117.24
A
A
A
CB
CG
CD2
TYR
TYR
TYR
74
74
74
N
16
5.03
0.80
106.30
111.33
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
45
45
45
N
16
-6.35
1.00
110.10
103.75
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
45
45
45
N
16
10.17
1.10
130.40
140.57
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
45
45
45
N
16
-7.63
1.00
107.30
99.67
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
45
45
45
N
16
-5.52
0.90
133.90
128.38
A
A
A
CG
CD2
CE3
TRP
TRP
TRP
45
45
45
N
17
-6.19
1.00
110.10
103.91
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
45
45
45
N
17
9.54
1.10
130.40
139.94
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
45
45
45
N
17
-7.38
1.00
107.30
99.92
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
45
45
45
N
18
-6.15
1.00
110.10
103.95
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
45
45
45
N
18
9.45
1.10
130.40
139.85
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
45
45
45
N
18
-7.30
1.00
107.30
100.00
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
45
45
45
N
19
-6.20
1.00
110.10
103.90
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
45
45
45
N
19
9.74
1.10
130.40
140.14
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
45
45
45
N
19
-7.39
1.00
107.30
99.91
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
45
45
45
N
20
-6.09
1.00
110.10
104.01
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
45
45
45
N
20
9.20
1.10
130.40
139.60
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
45
45
45
N
20
-7.29
1.00
107.30
100.01
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
45
45
45
N
21
-6.10
1.00
110.10
104.00
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
45
45
45
N
21
9.47
1.10
130.40
139.87
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
45
45
45
N
21
-7.41
1.00
107.30
99.89
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
45
45
45
N
22
-6.22
1.00
110.10
103.88
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
45
45
45
N
22
9.74
1.10
130.40
140.14
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
45
45
45
N
22
-7.52
1.00
107.30
99.78
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
45
45
45
N
23
-6.14
1.00
110.10
103.96
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
45
45
45
N
23
8.85
1.10
130.40
139.25
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
45
45
45
N
23
-7.05
1.00
107.30
100.25
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
45
45
45
N
24
-6.17
1.00
110.10
103.93
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
45
45
45
N
24
9.65
1.10
130.40
140.05
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
45
45
45
N
24
-7.36
1.00
107.30
99.94
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
45
45
45
N
25
-6.33
1.00
110.10
103.77
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
45
45
45
N
25
9.99
1.10
130.40
140.39
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
45
45
45
N
25
-7.61
1.00
107.30
99.69
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
45
45
45
N
26
4.94
0.80
106.30
111.24
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
45
45
45
N
26
-6.20
1.00
110.10
103.90
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
45
45
45
N
26
9.39
1.10
130.40
139.79
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
45
45
45
N
26
-7.31
1.00
107.30
99.99
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
45
45
45
N
27
9.22
1.10
130.40
139.62
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
45
45
45
N
27
-7.26
1.00
107.30
100.04
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
45
45
45
N
28
-6.16
1.00
110.10
103.94
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
45
45
45
N
28
9.20
1.10
130.40
139.60
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
45
45
45
N
28
-7.21
1.00
107.30
100.09
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
45
45
45
N
29
4.81
0.80
106.30
111.11
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
45
45
45
N
29
-6.28
1.00
110.10
103.82
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
45
45
45
N
29
9.53
1.10
130.40
139.93
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
45
45
45
N
29
-7.39
1.00
107.30
99.91
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
45
45
45
N
30
-6.10
1.00
110.10
104.00
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
45
45
45
N
30
9.41
1.10
130.40
139.81
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
45
45
45
N
30
-7.31
1.00
107.30
99.99
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
45
45
45
N
1
A
A
CG
ND1
HIS
HIS
29
29
-0.126
0.015
1.369
1.243
N
1
A
A
CG
CD2
TRP
TRP
45
45
-0.115
0.017
1.432
1.317
N
2
A
A
CG
ND1
HIS
HIS
29
29
-0.122
0.015
1.369
1.247
N
2
A
A
CG
CD2
TRP
TRP
45
45
-0.128
0.017
1.432
1.304
N
3
A
A
CG
ND1
HIS
HIS
29
29
-0.123
0.015
1.369
1.246
N
3
A
A
CG
CD2
TRP
TRP
45
45
-0.118
0.017
1.432
1.314
N
4
A
A
CG
ND1
HIS
HIS
29
29
-0.124
0.015
1.369
1.245
N
4
A
A
CG
CD2
TRP
TRP
45
45
-0.116
0.017
1.432
1.316
N
5
A
A
CG
ND1
HIS
HIS
29
29
-0.122
0.015
1.369
1.247
N
5
A
A
CG
CD2
TRP
TRP
45
45
-0.128
0.017
1.432
1.304
N
6
A
A
CG
ND1
HIS
HIS
29
29
-0.122
0.015
1.369
1.247
N
6
A
A
CG
CD2
TRP
TRP
45
45
-0.131
0.017
1.432
1.301
N
7
A
A
CG
ND1
HIS
HIS
29
29
-0.122
0.015
1.369
1.247
N
7
A
A
CG
CD2
TRP
TRP
45
45
-0.121
0.017
1.432
1.311
N
8
A
A
CG
ND1
HIS
HIS
29
29
-0.125
0.015
1.369
1.244
N
8
A
A
CG
CD2
TRP
TRP
45
45
-0.121
0.017
1.432
1.311
N
9
A
A
CG
ND1
HIS
HIS
29
29
-0.123
0.015
1.369
1.246
N
9
A
A
CG
CD2
TRP
TRP
45
45
-0.129
0.017
1.432
1.303
N
10
A
A
CG
ND1
HIS
HIS
29
29
-0.121
0.015
1.369
1.248
N
10
A
A
CG
CD2
TRP
TRP
45
45
-0.127
0.017
1.432
1.305
N
11
A
A
CG
ND1
HIS
HIS
29
29
-0.124
0.015
1.369
1.245
N
11
A
A
CG
CD2
TRP
TRP
45
45
-0.123
0.017
1.432
1.309
N
12
A
A
CG
ND1
HIS
HIS
29
29
-0.120
0.015
1.369
1.249
N
12
A
A
CG
CD2
TRP
TRP
45
45
-0.116
0.017
1.432
1.316
N
13
A
A
CG
ND1
HIS
HIS
29
29
-0.123
0.015
1.369
1.246
N
13
A
A
CG
CD2
TRP
TRP
45
45
-0.125
0.017
1.432
1.307
N
14
A
A
CG
ND1
HIS
HIS
29
29
-0.121
0.015
1.369
1.248
N
14
A
A
CG
CD2
TRP
TRP
45
45
-0.124
0.017
1.432
1.308
N
15
A
A
CG
ND1
HIS
HIS
29
29
-0.121
0.015
1.369
1.248
N
15
A
A
CG
CD2
TRP
TRP
45
45
-0.122
0.017
1.432
1.310
N
16
A
A
CG
ND1
HIS
HIS
29
29
-0.122
0.015
1.369
1.247
N
16
A
A
CG
CD2
TRP
TRP
45
45
-0.130
0.017
1.432
1.302
N
17
A
A
CG
ND1
HIS
HIS
29
29
-0.125
0.015
1.369
1.244
N
17
A
A
CG
CD2
TRP
TRP
45
45
-0.121
0.017
1.432
1.311
N
18
A
A
CG
ND1
HIS
HIS
29
29
-0.124
0.015
1.369
1.245
N
18
A
A
CG
CD2
TRP
TRP
45
45
-0.123
0.017
1.432
1.309
N
19
A
A
CG
ND1
HIS
HIS
29
29
-0.123
0.015
1.369
1.246
N
19
A
A
CG
CD2
TRP
TRP
45
45
-0.122
0.017
1.432
1.310
N
20
A
A
CG
ND1
HIS
HIS
29
29
-0.125
0.015
1.369
1.244
N
20
A
A
CG
CD2
TRP
TRP
45
45
-0.121
0.017
1.432
1.311
N
21
A
A
CG
ND1
HIS
HIS
29
29
-0.123
0.015
1.369
1.246
N
21
A
A
CG
CD2
TRP
TRP
45
45
-0.124
0.017
1.432
1.308
N
22
A
A
CG
ND1
HIS
HIS
29
29
-0.123
0.015
1.369
1.246
N
22
A
A
CG
CD2
TRP
TRP
45
45
-0.122
0.017
1.432
1.310
N
23
A
A
CG
ND1
HIS
HIS
29
29
-0.125
0.015
1.369
1.244
N
23
A
A
CG
CD2
TRP
TRP
45
45
-0.116
0.017
1.432
1.316
N
24
A
A
CG
ND1
HIS
HIS
29
29
-0.126
0.015
1.369
1.243
N
24
A
A
CG
CD2
TRP
TRP
45
45
-0.120
0.017
1.432
1.312
N
25
A
A
CG
ND1
HIS
HIS
29
29
-0.121
0.015
1.369
1.248
N
25
A
A
CG
CD2
TRP
TRP
45
45
-0.128
0.017
1.432
1.304
N
26
A
A
CG
ND1
HIS
HIS
29
29
-0.123
0.015
1.369
1.246
N
26
A
A
CG
CD2
TRP
TRP
45
45
-0.123
0.017
1.432
1.309
N
27
A
A
CG
ND1
HIS
HIS
29
29
-0.127
0.015
1.369
1.242
N
27
A
A
CG
CD2
TRP
TRP
45
45
-0.120
0.017
1.432
1.312
N
28
A
A
CG
ND1
HIS
HIS
29
29
-0.125
0.015
1.369
1.244
N
28
A
A
CG
CD2
TRP
TRP
45
45
-0.119
0.017
1.432
1.313
N
29
A
A
CG
ND1
HIS
HIS
29
29
-0.124
0.015
1.369
1.245
N
29
A
A
CG
CD2
TRP
TRP
45
45
-0.132
0.017
1.432
1.300
N
30
A
A
CG
ND1
HIS
HIS
29
29
-0.123
0.015
1.369
1.246
N
30
A
A
CG
CD2
TRP
TRP
45
45
-0.117
0.017
1.432
1.315
N
1
A
ASP
3
-154.36
65.36
1
A
PRO
4
-80.75
-91.36
1
A
ASN
5
-69.96
1.48
1
A
ALA
6
-18.80
86.34
1
A
PRO
7
-86.64
-154.20
1
A
PRO
11
-84.99
-151.32
1
A
PHE
14
-57.41
-6.50
1
A
PRO
30
-66.01
74.58
1
A
TYR
67
-61.06
-77.33
1
A
GLU
68
-48.63
-7.55
1
A
TYR
74
-71.74
-143.54
2
A
LYS
2
-117.40
-161.11
2
A
ASP
3
-43.82
156.92
2
A
PRO
4
-48.50
-159.12
2
A
ALA
6
-21.20
140.39
2
A
PRO
7
-82.29
-155.87
2
A
PRO
10
-42.73
164.99
2
A
PRO
11
-75.21
-149.29
2
A
PRO
30
-65.87
82.80
2
A
TYR
67
-50.68
-89.02
2
A
GLU
68
-43.43
-11.94
2
A
ILE
71
-35.33
-23.97
2
A
TYR
74
-61.73
-139.50
2
A
ARG
75
26.44
51.80
2
A
ALA
76
-57.62
178.02
3
A
LYS
2
-163.20
36.44
3
A
PRO
4
-65.84
-83.42
3
A
ALA
6
-51.58
106.86
3
A
PRO
7
-108.46
-155.40
3
A
PRO
11
-77.55
-148.28
3
A
SER
19
-38.58
-34.74
3
A
PRO
30
-68.25
71.61
3
A
ALA
49
-46.58
159.44
3
A
TYR
67
-47.23
-84.74
3
A
GLU
68
-43.89
-6.64
3
A
ALA
76
-169.73
87.70
4
A
PRO
4
-58.16
-155.91
4
A
ALA
6
-23.45
89.47
4
A
PRO
7
-94.11
-155.03
4
A
PRO
11
-85.69
-149.23
4
A
PRO
30
-66.28
76.38
4
A
TYR
67
-57.70
-80.85
4
A
GLU
68
-47.77
-7.54
4
A
TYR
74
-76.57
-133.81
4
A
ARG
75
-36.01
117.08
4
A
ALA
76
-167.43
82.91
5
A
ASP
3
-44.90
164.79
5
A
PRO
4
-52.34
-85.50
5
A
ALA
6
-31.74
100.41
5
A
PRO
7
-95.87
-155.60
5
A
PRO
11
-80.51
-148.69
5
A
TYR
67
-51.91
-90.50
5
A
GLU
68
-40.46
-9.83
5
A
ARG
75
17.70
90.00
5
A
ALA
76
177.71
161.45
6
A
LYS
2
-79.61
49.75
6
A
ALA
6
-41.58
101.64
6
A
PRO
7
-96.77
-156.41
6
A
PRO
11
-77.88
-150.67
6
A
PRO
30
-67.37
78.62
6
A
VAL
37
-54.14
-72.32
6
A
ALA
49
-46.06
152.25
6
A
TYR
67
-49.41
-86.68
6
A
GLU
68
-40.38
-8.77
6
A
ALA
76
-170.02
-169.06
7
A
LYS
2
-155.74
67.48
7
A
PRO
4
-75.95
-87.55
7
A
ALA
6
-25.52
89.34
7
A
PRO
7
-99.45
-155.40
7
A
PRO
10
-50.42
108.92
7
A
PRO
11
-83.68
-148.46
7
A
PRO
30
-68.51
68.53
7
A
ALA
49
-44.88
168.37
7
A
TYR
67
-63.54
-95.20
7
A
GLU
68
-37.07
-12.76
7
A
TYR
74
-69.43
-178.44
7
A
ARG
75
14.94
66.11
7
A
ALA
76
-171.70
45.19
8
A
ASP
3
29.13
72.78
8
A
ALA
6
-33.77
100.54
8
A
PRO
7
-94.35
-156.53
8
A
PRO
11
-79.41
-147.66
8
A
PRO
30
-68.25
69.37
8
A
TYR
67
-56.05
-84.22
8
A
GLU
68
-40.85
-10.56
8
A
TYR
74
-65.47
-168.89
8
A
ALA
76
-169.46
84.83
9
A
ASP
3
-174.11
64.63
9
A
PRO
4
-73.89
-70.30
9
A
ALA
6
-24.83
90.68
9
A
PRO
7
-96.50
-156.70
9
A
PRO
11
-84.59
-147.01
9
A
TYR
67
-62.18
-84.91
9
A
GLU
68
-43.54
-10.35
9
A
TYR
74
-83.85
-156.40
9
A
ALA
76
-167.60
47.21
10
A
ASP
3
-171.54
63.86
10
A
PRO
4
-66.79
-74.59
10
A
ALA
6
-17.35
84.14
10
A
PRO
7
-95.02
-154.22
10
A
PRO
11
-76.64
-147.70
10
A
PRO
30
-68.63
75.12
10
A
TYR
67
-72.30
-77.86
10
A
GLU
68
-47.90
-8.48
10
A
TYR
74
-73.16
-139.80
10
A
ALA
76
-164.21
57.49
11
A
PRO
4
-49.70
-0.49
11
A
PRO
7
-87.81
-153.85
11
A
PRO
11
-80.60
-148.56
11
A
PRO
30
-68.20
80.41
11
A
TYR
67
-51.96
-80.86
11
A
GLU
68
-46.51
-15.53
11
A
TYR
74
-79.40
-158.98
11
A
ARG
75
20.38
43.34
12
A
LYS
2
46.79
72.18
12
A
ASN
5
-61.98
-76.85
12
A
ALA
6
-37.63
95.70
12
A
PRO
7
-101.28
-156.54
12
A
PRO
11
-80.95
-148.52
12
A
PRO
30
-61.88
75.97
12
A
TYR
67
-58.83
-86.62
12
A
GLU
68
-46.04
-9.34
12
A
TYR
74
-66.56
-135.86
12
A
ARG
75
-30.68
157.88
12
A
ALA
76
-170.95
99.11
13
A
PRO
4
-67.29
-76.37
13
A
ALA
6
-23.45
90.53
13
A
PRO
7
-89.36
-154.03
13
A
PRO
11
-72.93
-148.92
13
A
PRO
30
-66.20
72.25
13
A
VAL
37
-56.97
-71.67
13
A
TYR
67
-59.32
-78.78
13
A
GLU
68
-45.66
-10.02
13
A
TYR
74
-61.95
-139.26
13
A
ALA
76
-169.56
66.88
14
A
ALA
6
-18.11
86.34
14
A
LYS
8
37.54
120.67
14
A
PRO
10
-45.93
162.88
14
A
PRO
11
-78.30
-147.93
14
A
PRO
30
-67.75
75.86
14
A
TYR
67
-47.21
-71.54
14
A
GLU
68
-47.68
-6.88
14
A
TYR
74
-73.35
-143.64
15
A
LYS
2
-167.30
64.99
15
A
ALA
6
-17.30
85.11
15
A
PRO
7
-94.86
-148.99
15
A
PRO
11
-83.09
-152.19
15
A
PRO
30
-68.42
73.30
15
A
ALA
49
-56.82
176.41
15
A
TYR
67
-62.91
-70.83
15
A
GLU
68
-52.49
-5.56
15
A
TYR
74
-96.87
-139.82
15
A
ARG
75
-56.06
85.34
15
A
ALA
76
-73.12
40.62
16
A
ASP
3
-30.96
96.81
16
A
PRO
4
-56.32
-139.35
16
A
ASN
5
-67.19
11.95
16
A
ALA
6
-27.98
110.09
16
A
PRO
7
-89.89
-158.59
16
A
PRO
10
-45.42
168.72
16
A
PRO
11
-78.57
-148.87
16
A
PRO
30
-67.59
73.09
16
A
TYR
67
-50.09
-84.93
16
A
GLU
68
-43.53
-11.51
16
A
TYR
74
-57.61
-169.42
16
A
ARG
75
22.51
44.58
16
A
ALA
76
-67.64
97.61
17
A
ASP
3
-163.79
76.57
17
A
ALA
6
-27.38
89.33
17
A
PRO
7
-95.20
-154.92
17
A
PRO
10
-47.84
150.90
17
A
PRO
11
-81.04
-148.62
17
A
PRO
30
-67.75
70.78
17
A
TYR
67
-60.88
-77.26
17
A
GLU
68
-47.63
-7.12
17
A
TYR
74
-70.40
-146.25
17
A
ALA
76
-167.17
47.43
18
A
LYS
2
-172.82
145.56
18
A
ASP
3
-50.03
179.45
18
A
PRO
4
-63.00
-70.20
18
A
ASN
5
-161.72
47.36
18
A
ALA
6
-26.31
148.55
18
A
PRO
7
-102.27
-162.03
18
A
PRO
10
-44.95
105.76
18
A
PRO
11
-84.44
-147.58
18
A
SER
19
-39.73
-33.16
18
A
PRO
30
-68.22
72.86
18
A
TYR
67
-54.42
-104.35
18
A
GLU
68
-44.96
-7.73
18
A
ILE
71
-36.14
-24.37
18
A
TYR
74
-57.70
-149.77
18
A
ARG
75
32.34
64.68
19
A
LYS
2
57.94
166.39
19
A
PRO
4
-58.67
-146.97
19
A
ALA
6
-36.37
99.17
19
A
PRO
7
-96.15
-156.84
19
A
PRO
11
-80.53
-148.76
19
A
PRO
30
-66.27
81.11
19
A
TYR
67
-54.14
-85.95
19
A
GLU
68
-39.64
-10.87
19
A
ALA
76
-171.06
79.13
20
A
LYS
2
-170.50
-179.11
20
A
PRO
4
-51.26
-175.18
20
A
ALA
6
-35.15
99.88
20
A
PRO
7
-104.36
-156.97
20
A
PRO
11
-88.05
-149.16
20
A
PRO
30
-66.32
76.63
20
A
TYR
67
-67.14
-90.94
20
A
GLU
68
-39.18
-10.52
20
A
TYR
74
-57.40
-165.47
20
A
ARG
75
-66.35
82.48
20
A
ALA
76
-175.82
69.23
21
A
ASP
3
-170.09
68.02
21
A
ALA
6
-27.19
94.12
21
A
PRO
11
-84.66
-146.10
21
A
PRO
30
-66.08
82.51
21
A
TYR
67
-57.67
-100.12
21
A
GLU
68
-44.09
-14.59
21
A
TYR
74
-61.07
-141.08
21
A
ARG
75
-61.04
77.87
21
A
ALA
76
174.81
119.32
22
A
LYS
2
-60.20
94.65
22
A
PRO
4
-70.64
-77.81
22
A
ALA
6
-47.05
104.73
22
A
PRO
7
-106.38
-156.27
22
A
PRO
11
-80.19
-149.12
22
A
PRO
30
-66.47
76.29
22
A
ASN
47
-73.10
33.10
22
A
TYR
67
-54.88
-87.19
22
A
GLU
68
-37.06
-11.92
22
A
TYR
74
-72.86
-158.51
22
A
ARG
75
-40.10
102.81
22
A
ALA
76
-162.98
56.29
23
A
ASP
3
-163.93
73.18
23
A
PRO
7
-104.59
-156.55
23
A
PRO
11
-85.60
-146.69
23
A
PRO
30
-65.99
74.24
23
A
TYR
67
-60.25
-94.10
23
A
GLU
68
-44.71
-11.57
23
A
TYR
74
-65.85
-172.82
23
A
ARG
75
-118.07
-154.78
23
A
ALA
76
-168.55
42.95
24
A
LYS
2
-46.89
97.42
24
A
ALA
6
-39.77
101.44
24
A
PRO
7
-102.67
-157.88
24
A
PRO
11
-83.12
-150.46
24
A
PRO
30
-69.63
31.60
24
A
TYR
67
-54.66
-87.38
24
A
GLU
68
-39.06
-12.47
24
A
ARG
75
-105.34
-163.21
25
A
LYS
2
48.09
-172.30
25
A
ASP
3
-150.87
72.21
25
A
PRO
7
-98.63
-155.59
25
A
PRO
11
-74.95
-147.28
25
A
LYS
26
-48.83
-18.74
25
A
PRO
30
-69.07
67.66
25
A
VAL
37
-55.06
-71.32
25
A
TYR
67
-64.10
-85.98
25
A
GLU
68
-39.04
-9.67
25
A
TYR
74
-90.69
-126.12
25
A
ARG
75
39.42
-169.56
25
A
ALA
76
-172.28
39.77
26
A
PRO
4
-59.63
-71.77
26
A
ALA
6
-29.41
96.91
26
A
PRO
7
-92.13
-155.23
26
A
PRO
11
-83.03
-150.31
26
A
PRO
30
-64.51
81.13
26
A
ALA
49
-43.98
151.60
26
A
TYR
67
-57.02
-78.16
26
A
GLU
68
-46.00
-10.06
26
A
TYR
74
-63.54
-159.10
26
A
ARG
75
8.77
92.78
27
A
LYS
2
-50.79
-177.06
27
A
PRO
4
-83.30
-73.69
27
A
ALA
6
-32.43
101.37
27
A
PRO
7
-96.12
-155.16
27
A
PRO
11
-78.86
-146.19
27
A
PRO
30
-64.70
78.20
27
A
ALA
49
-49.99
152.68
27
A
TYR
67
-57.38
-85.94
27
A
GLU
68
-40.59
-15.25
27
A
TYR
74
-58.92
-145.56
27
A
ARG
75
-37.32
97.26
27
A
ALA
76
174.15
123.66
28
A
PRO
4
-61.27
-163.42
28
A
ALA
6
-16.59
84.33
28
A
PRO
7
-98.24
-154.06
28
A
PRO
11
-92.11
-151.86
28
A
PHE
14
-57.72
-6.78
28
A
PRO
30
-68.28
80.64
28
A
TYR
67
-51.67
-91.06
28
A
GLU
68
-47.12
-8.38
28
A
TYR
74
-73.23
-131.03
28
A
ARG
75
-38.87
161.23
29
A
LYS
2
-167.15
48.74
29
A
PRO
4
-68.06
-140.45
29
A
ALA
6
-24.30
95.11
29
A
PRO
7
-96.47
-153.55
29
A
PRO
11
-84.63
-148.44
29
A
PRO
30
-59.83
81.19
29
A
TYR
67
-52.88
-86.75
29
A
GLU
68
-42.58
-9.31
29
A
ASP
70
-135.09
-30.55
30
A
ASP
3
-47.22
163.07
30
A
PRO
4
-50.84
-158.48
30
A
ASN
5
-48.16
-19.05
30
A
ALA
6
-23.88
91.00
30
A
PRO
7
-95.17
-158.00
30
A
PRO
11
-82.39
-149.12
30
A
PRO
30
-69.50
69.71
30
A
LYS
66
-39.77
-33.65
30
A
TYR
67
-67.82
-102.85
30
A
GLU
68
-46.17
-7.31
30
A
ALA
72
-46.15
-15.98
30
A
TYR
74
-48.39
161.45
30
A
ARG
75
-129.42
-165.63
model building
X-PLOR
2.0
refinement
X-PLOR
2.0
phasing
X-PLOR
2.0
STRUCTURE OF THE HMG BOX MOTIF IN THE B-DOMAIN OF HMG1
1
Y
N
A
ALA
13
A
ALA
13
HELX_P
BENT ROUND H2
A
HIS
29
A
HIS
29
1
H1
17
A
ILE
34
A
ILE
34
HELX_P
A
THR
48
A
THR
48
1
H2
15
A
ALA
50
A
ALA
50
HELX_P
A
TYR
74
A
TYR
74
1
H3
25
DNA-BINDING
DNA-BINDING
HMG1_RAT
UNP
1
1
P63159
GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP
KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAA
YRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEEEEDEDEEEDDDDE
88
164
1HMF
1
77
P63159
A
1
1
77
1
P 1