0.011143 0.006434 0.000000 0.000000 0.012867 0.000000 0.000000 0.000000 0.005383 0.00000 0.00000 0.00000 Pley, H.W. Flaherty, K.M. McKay, D.B. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 18 90.00 90.00 120.00 89.740 89.740 185.780 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 R C N 49 N O N 50 R C N 51 N N N 52 N C N 53 N O N 54 N N N 55 N C N 56 N N N 57 N C N 58 N C N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N O N 74 N P N 75 N O N 76 N O N 77 N O N 78 N C N 79 R C N 80 N O N 81 S C N 82 N O N 83 N C N 84 R C Y 85 N N Y 86 N C Y 87 N N Y 88 N C Y 89 N C N 90 N N Y 91 N N Y 92 N C Y 93 N N Y 94 N C N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N O N 110 N P N 111 N O N 112 N O N 113 N O N 114 N C N 115 R C N 116 N O N 117 S C N 118 N O N 119 N C N 120 R C N 121 N N N 122 N C N 123 N O N 124 N N N 125 N C N 126 N N N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N O N 144 N P N 145 N O N 146 N O N 147 N O N 148 N C N 149 R C N 150 N O N 151 S C N 152 N O N 153 N C N 154 R C Y 155 N N Y 156 N C Y 157 N N Y 158 N C N 159 N C N 160 N O N 161 N N N 162 N C N 163 N N N 164 N N Y 165 N C N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N O N 181 N P N 182 N O N 183 N O N 184 N O N 185 N C N 186 R C N 187 N O N 188 S C N 189 N O N 190 N C N 191 R C N 192 N N N 193 N C N 194 N O N 195 N N N 196 N C N 197 N O N 198 N C N 199 N C N 200 N C N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N O N 217 N P N 218 N O N 219 N O N 220 N O N 221 N C N 222 R C N 223 N O N 224 S C N 225 N O N 226 R C N 227 N O N 228 R C Y 229 N N Y 230 N C Y 231 N N Y 232 N C N 233 N C N 234 N O N 235 N N N 236 N C N 237 N N N 238 N N Y 239 N C N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N O N 255 N P N 256 N O N 257 N O N 258 N O N 259 N C N 260 R C N 261 N O N 262 S C N 263 N O N 264 R C N 265 N O N 266 R C N 267 N N N 268 N C N 269 N O N 270 N N N 271 N C N 272 N O N 273 N C N 274 N C N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N doub N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing Y 99 N sing Y 100 N sing Y 101 N doub N 102 N sing Y 103 N sing Y 104 N sing Y 105 N doub N 106 N sing Y 107 N doub N 108 N sing N 109 N sing Y 110 N sing Y 111 N doub N 112 N sing Y 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N doub N 140 N sing N 141 N doub N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing Y 172 N sing Y 173 N sing Y 174 N doub N 175 N sing Y 176 N sing N 177 N sing Y 178 N doub N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N doub N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N doub N 214 N sing N 215 N sing N 216 N sing N 217 N doub N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing Y 249 N sing Y 250 N sing Y 251 N doub N 252 N sing Y 253 N sing N 254 N sing Y 255 N doub N 256 N doub N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N doub N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N doub N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N doub N 296 N sing N 297 N doub N 298 N sing N 299 N sing UK Nature NATUAS 0006 0028-0836 372 68 74 10.1038/372068a0 7969422 Three-dimensional structure of a hammerhead ribozyme. 1994 UK Nature NATUAS 0006 0028-0836 372 111 113 Model for an RNA Tertiary Interaction from the Structure of an Intermolecular Complex Between a GAAA Tetraloop and an RNA Helix 1994 US Cell(Cambridge,Mass.) CELLB5 0998 0092-8674 81 991 1002 The Crystal Structure of an All-RNA Hammerhead Ribozyme: a Proposed Mechanism for RNA Catalytic Cleavage 1995 US J.Biol.Chem. JBCHA3 0071 0021-9258 268 19656 19658 Crystals of a Hammerhead Ribozyme 1993 10.2210/pdb1hmh/pdb pdb_00001hmh 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 IMAGE PLATE MARRESEARCH x-ray 1 1.0 BL7-1 SSRL SYNCHROTRON SSRL BEAMLINE BL7-1 11030.680 HAMMERHEAD RIBOZYME-RNA STRAND 3 man polymer 3968.573 HAMMERHEAD RIBOZYME-DNA STRAND 3 man polymer no no GGCGACCCUGAUGAGGCCGAAAGGCCGAAACCGU GGCGACCCUGAUGAGGCCGAAAGGCCGAAACCGU A,C,E polyribonucleotide no no (DA)(DC)(DG)(DG)(DT)(DC)(DG)(DG)(DT)(DC)(DG)(DC)(DC) ACGGTCGGTCGCC B,D,F polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 4.80 74.37 VAPOR DIFFUSION, HANGING DROP 6.00 pH 6.00, VAPOR DIFFUSION, HANGING DROP, temperature 277.00K 277.00 WATER 1 NH4 SULFATE 1 MGCL2 1 SPERMINE 1 CACODYLATE 1 -0.245 1 19 A 27 B 17 1.940 A_G27:DC17_B 1 -14.907 -0.197 0.300 -0.339 -16.954 1 19 A 26 B 16 4.918 A_G26:DC16_B 2 -18.575 -0.406 -0.312 -0.363 -11.406 1 19 A 25 B 15 1.009 A_C25:DG15_B 3 -9.612 -0.026 0.397 -0.453 -3.867 1 19 A 24 B 14 1.729 A_G24:DC14_B 4 -15.031 0.180 0.294 -0.295 -1.116 1 20 A 23 B 13 -4.032 A_A23:DT13_B 5 -13.309 0.025 0.232 -0.496 3.335 1 19 A 22 B 12 1.968 A_C22:DG12_B 6 -6.037 0.266 0.113 -0.365 7.432 1 19 A 21 B 11 5.654 A_C21:DG11_B 7 -13.800 0.712 -0.321 -0.236 1.146 1 A 30 B 170 16.161 A_C30:DC170_B 8 -19.210 2.056 0.241 -2.230 -2.570 1 19 A 114 A 104 0.442 A_G114:C104_A 9 6.044 -0.204 -0.135 -0.423 1.459 1 19 A 113 A 103 2.106 A_G113:C103_A 10 -4.314 -0.411 -0.019 -0.443 -0.006 1 19 A 112 A 102 4.883 A_C112:G102_A 11 -13.810 0.094 -0.074 -0.302 5.822 1 19 A 111 A 101 -0.384 A_C111:G101_A 12 -2.319 0.071 -0.159 -0.165 10.424 10 11 A 120 A 90 -3.769 A_G120:A90_A 13 -9.064 6.701 -0.045 -4.513 -19.356 9 11 A 130 A 80 -0.275 A_A130:G80_A 14 17.880 -6.283 -0.025 -4.313 16.879 5 A 140 A 70 53.697 A_A140:U70_A 15 -5.514 -5.958 0.066 -0.431 -12.198 A 151 B 161 -40.408 A_A151:DT161_B 16 -23.570 0.592 -1.370 1.214 -0.584 1 19 A 152 B 162 5.354 A_C152:DG162_B 17 -19.042 0.189 0.148 0.091 2.045 1 19 A 153 B 163 -2.963 A_C153:DG163_B 18 -11.893 -0.147 -0.047 -0.364 -1.053 1 19 A 154 B 164 -1.503 A_G154:DC164_B 19 -7.562 -0.180 0.243 -0.579 3.114 1 20 A 155 B 165 7.135 A_U155:DA165_B 20 -5.741 0.513 0.520 -0.183 -40.315 L C 24 L A 22 -172.353 C_A24L:A22L_A 21 27.411 1.066 -1.347 2.586 -0.984 1 19 C 114 C 104 0.564 C_G114:C104_C 22 -3.907 -0.415 0.021 -0.302 -8.788 1 19 C 113 C 103 -1.301 C_G113:C103_C 23 -10.861 -0.397 -0.432 -0.313 1.538 1 19 C 112 C 102 4.187 C_C112:G102_C 24 -17.660 -0.157 -0.157 -0.274 3.007 1 19 C 111 C 101 0.665 C_C111:G101_C 25 -11.193 0.198 -0.509 -0.242 4.121 10 C 120 C 90 -11.011 C_G120:A90_C 26 -6.185 7.054 -0.322 -4.749 -18.493 10 11 C 130 C 80 -2.420 C_A130:G80_C 27 19.378 -6.338 0.503 -4.813 26.477 5 C 140 C 70 47.744 C_A140:U70_C 28 -1.762 -6.184 0.364 -0.816 -0.539 C 151 D 161 -36.583 C_A151:DT161_D 29 -34.292 0.526 -1.266 1.145 -10.120 1 19 C 152 D 162 -5.267 C_C152:DG162_D 30 -17.057 0.210 0.742 -0.173 -10.223 1 19 C 153 D 163 0.036 C_C153:DG163_D 31 -15.346 0.140 0.774 -0.274 -3.717 1 19 C 154 D 164 1.303 C_G154:DC164_D 32 -19.763 -0.046 0.080 -0.337 7.537 1 20 C 155 D 165 -0.302 C_U155:DA165_D 33 -4.976 0.358 0.218 -0.274 -4.411 1 19 C 27 D 17 5.615 C_G27:DC17_D 34 -8.306 -0.066 0.115 -0.149 -5.551 1 19 C 26 D 16 -1.565 C_G26:DC16_D 35 -18.269 -0.181 -0.155 -0.144 -1.111 1 19 C 25 D 15 0.585 C_C25:DG15_D 36 -8.975 0.500 -0.076 -0.299 -6.064 1 19 C 24 D 14 0.919 C_G24:DC14_D 37 -20.628 -0.001 0.119 -0.304 10.253 1 20 C 23 D 13 -3.295 C_A23:DT13_D 38 -12.297 -0.085 0.416 -0.310 8.705 1 19 C 22 D 12 3.249 C_C22:DG12_D 39 -11.211 0.044 0.332 -0.272 0.557 1 19 C 21 D 11 0.647 C_C21:DG11_D 40 -7.906 0.445 0.006 -0.522 2.038 1 C 30 D 170 29.271 C_C30:DC170_D 41 -18.632 2.817 0.780 -1.741 -1.727 1 19 E 27 F 17 -1.503 E_G27:DC17_F 42 -2.634 -0.060 0.059 -0.399 0.839 1 19 E 26 F 16 1.925 E_G26:DC16_F 43 -11.469 -0.121 0.169 -0.376 0.524 1 19 E 25 F 15 0.561 E_C25:DG15_F 44 -8.082 0.420 0.265 -0.568 -3.612 1 19 E 24 F 14 11.753 E_G24:DC14_F 45 -16.178 -0.549 0.316 -0.091 5.955 1 20 E 23 F 13 -4.275 E_A23:DT13_F 46 -18.099 0.215 0.060 -0.543 5.078 1 19 E 22 F 12 2.348 E_C22:DG12_F 47 -8.766 0.603 0.189 -0.445 14.347 1 19 E 21 F 11 -0.678 E_C21:DG11_F 48 -12.664 0.006 -0.115 -0.261 8.247 1 E 30 F 170 25.873 E_C30:DC170_F 49 -14.739 2.502 0.373 -1.710 -14.515 L E 24 L E 21 -19.798 E_A24L:G21L_E 50 1.463 -6.990 0.629 -5.454 -3.684 1 19 E 114 E 104 2.216 E_G114:C104_E 51 0.656 -0.534 -0.287 -0.114 -3.828 1 19 E 113 E 103 0.373 E_G113:C103_E 52 -5.829 -0.137 -0.054 -0.402 -6.234 1 19 E 112 E 102 0.921 E_C112:G102_E 53 -6.654 0.807 0.225 -0.283 3.089 1 19 E 111 E 101 3.052 E_C111:G101_E 54 0.793 0.076 -0.159 0.028 8.430 10 11 E 120 E 90 -2.964 E_G120:A90_E 55 -9.914 6.837 0.342 -4.250 -19.025 10 11 E 130 E 80 -3.864 E_A130:G80_E 56 18.459 -6.611 0.318 -4.599 32.645 5 E 140 E 70 50.362 E_A140:U70_E 57 -2.421 -6.685 0.326 -0.761 -5.490 E 151 F 161 -34.743 E_A151:DT161_F 58 -37.363 0.605 -0.987 0.747 -1.022 1 19 E 152 F 162 -2.347 E_C152:DG162_F 59 -19.244 -0.235 0.471 -0.381 -3.737 1 19 E 153 F 163 -1.224 E_C153:DG163_F 60 -6.125 -0.205 0.735 -0.280 -6.105 1 19 E 154 F 164 5.283 E_G154:DC164_F 61 -27.639 -0.491 0.189 -0.520 -8.154 1 20 E 155 F 165 -3.814 E_U155:DA165_F 62 -4.684 -0.557 0.137 -0.379 3.061 35.358 A A 27 26 17.183 B B 17 16 3.709 10.186 0.492 -1.789 AA_G27G26:DC16DC17_BB 1 8.916 -15.040 32.741 -4.565 0.608 2.648 31.339 A A 26 25 13.618 B B 16 15 3.064 7.290 0.190 -1.433 AA_G26C25:DG15DC16_BB 2 -1.269 2.371 30.474 -3.871 -0.563 2.729 25.292 A A 25 24 12.453 B B 15 14 3.070 5.398 0.121 -1.250 AA_C25G24:DC14DG15_BB 3 3.185 -7.349 24.516 -4.269 0.556 3.161 33.100 A A 24 23 0.183 B B 14 13 3.177 0.104 -0.144 -1.198 AA_G24A23:DT13DC14_BB 4 1.833 -3.219 33.051 -2.119 0.553 3.437 33.033 A A 23 22 -3.536 B B 13 12 3.316 -2.006 0.904 -0.992 AA_A23C22:DG12DT13_BB 5 3.058 -5.389 32.835 -1.393 -1.054 2.869 28.167 A A 22 21 9.862 B B 12 11 3.257 4.772 -0.187 -1.903 AA_C22C21:DG11DG12_BB 6 2.354 -4.865 27.670 -4.965 0.904 3.236 38.245 A A 21 30 9.360 B B 11 170 3.500 6.088 0.420 -0.830 AA_C21C30:DC170DG11_BB 7 -5.584 8.586 37.375 -2.065 -1.373 3.381 25.740 A A 114 113 -0.670 A A 104 103 3.356 -0.298 0.129 -2.145 AA_G114G113:C103C104_AA 8 0.137 -0.307 25.738 -4.730 -0.249 3.160 34.062 A A 113 112 7.685 A A 103 102 3.396 4.487 0.618 -1.841 AA_G113C112:G102C103_AA 9 1.831 -3.136 33.726 -3.862 -0.761 3.038 30.825 A A 112 111 7.120 A A 102 101 3.230 3.773 -0.863 -1.804 AA_C112C111:G101G102_AA 10 -1.918 3.618 30.540 -4.101 1.264 3.246 55.423 A A 111 120 4.393 A A 101 90 3.343 4.082 -0.486 -1.020 AA_C111G120:A90G101_AA 11 2.256 -2.428 55.242 -1.337 0.656 2.206 -10.761 A A 120 130 6.888 A A 90 80 4.032 -1.181 1.008 -1.284 AA_G120A130:G80A90_AA 12 7.079 41.301 -8.024 8.934 17.886 -0.087 33.729 A A 130 140 25.064 A A 80 70 2.038 13.607 3.187 -0.864 AA_A130A140:U70G80_AA 13 -15.008 27.644 27.110 -2.225 -6.305 3.870 76.085 A A 140 151 10.448 A B 70 161 4.005 12.832 -2.749 -0.995 AA_A140A151:DT161U70_BA 14 -1.622 1.321 75.143 -1.269 2.172 2.583 31.380 A A 151 152 0.697 B B 161 162 3.056 0.375 2.248 -0.935 AA_A151C152:DG162DT161_BB 15 -5.869 10.913 30.837 -1.790 -5.117 2.744 29.267 A A 152 153 17.497 B B 162 163 3.226 8.691 -0.527 -1.309 AA_C152C153:DG163DG162_BB 16 -3.504 7.055 27.757 -4.355 0.331 2.732 33.583 A A 153 154 14.934 B B 163 164 3.288 8.528 0.486 -1.603 AA_C153G154:DC164DG163_BB 17 -3.096 5.421 32.369 -4.085 -1.316 3.069 34.185 A A 154 155 2.267 B B 164 165 3.138 1.332 0.638 -1.909 AA_G154U155:DA165DC164_BB 18 0.315 -0.536 34.158 -3.447 -1.038 5.073 -26.500 L C C 24 114 3.885 L A C 22 104 2.718 -1.686 5.442 -2.210 CC_A24LG114:C104A22L_CA 19 -14.432 -33.261 -22.221 5.400 6.907 3.087 32.588 C C 114 113 12.349 C C 104 103 3.531 6.880 -0.535 -1.791 CC_G114G113:C103C104_CC 20 -0.019 0.035 31.873 -4.418 0.950 2.978 31.053 C C 113 112 1.742 C C 103 102 2.997 0.932 1.067 -1.829 CC_G113C112:G102C103_CC 21 1.117 -2.087 31.020 -3.580 -1.796 3.042 33.222 C C 112 111 7.566 C C 102 101 3.313 4.309 -0.678 -1.402 CC_C112C111:G101G102_CC 22 2.841 -4.989 32.829 -3.157 1.651 3.518 60.054 C C 111 120 7.119 C C 101 90 3.617 7.111 -0.984 -0.632 CC_C111G120:A90G101_CC 23 0.681 -0.682 59.667 -1.016 1.020 2.217 -13.778 C C 120 130 30.232 C C 90 80 3.878 -6.770 1.229 -0.980 CC_G120A130:G80A90_CC 24 4.692 20.951 -11.054 10.987 9.905 -0.304 35.369 C C 130 140 18.278 C C 80 70 1.838 10.469 3.215 -0.988 CC_A130A140:U70G80_CC 25 -17.323 30.247 29.158 -2.026 -5.953 3.781 78.914 C C 140 151 6.839 C D 70 161 3.884 8.680 -2.500 -0.972 CC_A140A151:DT161U70_DC 26 -0.117 0.092 78.513 -1.044 1.963 2.357 34.755 C C 151 152 11.999 D D 161 162 3.336 6.970 1.460 -1.014 CC_A151C152:DG162DT161_DD 27 -12.367 21.290 31.805 -2.668 -4.166 3.171 37.773 C C 152 153 3.399 D D 162 163 3.244 2.199 0.167 -1.158 CC_C152C153:DG163DG162_DD 28 -0.614 0.950 37.706 -2.066 -0.336 2.176 31.037 C C 153 154 20.017 D D 163 164 2.827 10.456 0.605 -1.674 CC_C153G154:DC164DG163_DD 29 5.368 -10.276 28.776 -4.728 -0.309 2.688 28.425 C C 154 155 8.129 D D 164 165 3.065 3.977 0.631 -2.262 CC_G154U155:DA165DC164_DD 30 -1.560 3.189 28.109 -5.413 -1.601 2.863 31.931 C C 27 26 13.295 D D 17 16 3.332 7.251 -0.571 -1.637 CC_G27G26:DC16DC17_DD 31 1.251 -2.293 31.093 -4.238 1.256 3.002 35.220 C C 26 25 8.379 D D 16 15 3.193 5.053 0.183 -1.161 CC_G26C25:DG15DC16_DD 32 0.258 -0.427 34.866 -2.634 -0.266 2.587 32.673 C C 25 24 19.586 D D 15 14 3.317 10.817 0.496 -1.768 CC_C25G24:DC14DG15_DD 33 1.530 -2.771 30.839 -4.886 -0.635 2.855 27.261 C C 24 23 -1.334 D D 14 13 2.768 -0.628 -0.970 -1.260 CC_G24A23:DT13DC14_DD 34 -1.873 3.976 27.191 -2.539 1.655 3.031 33.971 C C 23 22 11.725 D D 13 12 3.341 6.804 0.854 -1.454 CC_A23C22:DG12DT13_DD 35 1.664 -2.867 33.262 -3.562 -1.199 3.222 33.861 C C 22 21 5.825 D D 12 11 3.430 3.383 -0.272 -1.615 CC_C22C21:DG11DG12_DD 36 2.940 -5.062 33.572 -3.330 0.950 3.088 41.427 C C 21 30 10.131 D D 11 170 3.428 7.118 1.476 -0.641 CC_C21C30:DC170DG11_DD 37 -4.841 6.889 40.561 -1.672 -2.608 2.750 29.115 E E 27 26 10.243 F F 17 16 3.108 5.122 -0.476 -1.918 EE_G27G26:DC16DC17_FF 38 -1.394 2.788 28.638 -4.826 0.671 3.292 35.078 E E 26 25 3.105 F F 16 15 3.401 1.866 -0.085 -1.765 EE_G26C25:DG15DC16_FF 39 -4.276 7.114 34.776 -3.215 -0.517 2.074 28.263 E E 25 24 24.257 F F 15 14 3.010 11.513 0.089 -1.710 EE_C25G24:DC14DG15_FF 40 0.322 -0.679 25.853 -5.677 -0.120 2.933 35.938 E E 24 23 8.545 F F 14 13 3.056 5.254 -1.310 -0.910 EE_G24A23:DT13DC14_FF 41 -1.088 1.770 35.548 -2.165 1.980 3.147 34.556 E E 23 22 6.966 F F 13 12 3.318 4.128 0.736 -1.420 EE_A23C22:DG12DT13_FF 42 0.806 -1.359 34.307 -3.024 -1.116 1.597 21.739 E E 22 21 25.939 F F 12 11 2.980 9.451 0.174 -2.545 EE_C22C21:DG11DG12_FF 43 1.814 -4.979 19.515 -9.500 0.067 3.144 42.118 E E 21 30 10.845 F F 11 170 3.383 7.751 1.240 -0.744 EE_C21C30:DC170DG11_FF 44 -1.872 2.620 41.390 -1.841 -1.920 2.913 49.323 L E E 24 114 10.721 L E E 21 104 2.938 8.895 2.902 -1.178 EE_A24LG114:C104G21L_EE 45 4.087 -4.926 48.401 -2.011 -3.202 3.403 27.251 E E 114 113 -0.238 E E 104 103 3.396 -0.112 0.013 -2.414 EE_G114G113:C103C104_EE 46 -1.106 2.348 27.229 -5.093 -0.315 3.049 37.374 E E 113 112 9.667 E E 103 102 3.427 6.168 -0.033 -2.093 EE_G113C112:G102C103_EE 47 0.449 -0.703 36.877 -4.076 0.110 2.784 19.879 E E 112 111 6.030 E E 102 101 3.068 2.073 0.030 -2.428 EE_C112C111:G101G102_EE 48 2.280 -6.631 19.641 -7.915 0.881 3.284 53.120 E E 111 120 3.939 E E 101 90 3.329 3.520 -0.828 -0.688 EE_C111G120:A90G101_EE 49 -0.280 0.313 53.011 -0.996 0.908 1.731 -6.853 E E 120 130 17.032 E E 90 80 4.003 -1.780 0.632 -1.297 EE_G120A130:G80A90_EE 50 5.008 47.925 -4.329 18.482 26.759 -0.573 35.530 E E 130 140 17.020 E E 80 70 1.700 9.774 3.253 -1.306 EE_A130A140:U70G80_EE 51 -18.114 31.541 29.119 -2.413 -5.835 4.222 82.494 E E 140 151 9.235 E F 70 161 4.247 12.147 -2.080 -0.380 EE_A140A151:DT161U70_FE 52 -2.576 1.959 81.720 -0.679 1.494 2.517 33.511 E E 151 152 2.568 F F 161 162 2.914 1.473 1.824 -0.939 EE_A151C152:DG162DT161_FF 53 -5.885 10.259 32.973 -1.831 -3.974 3.030 32.273 E E 152 153 8.550 F F 162 163 3.276 4.727 0.163 -1.220 EE_C152C153:DG163DG162_FF 54 -3.638 6.581 31.732 -3.012 -0.921 2.762 32.096 E E 153 154 18.076 F F 163 164 3.293 9.789 0.445 -1.361 EE_C153G154:DC164DG163_FF 55 5.715 -10.552 30.077 -4.144 0.178 3.203 34.076 E E 154 155 1.612 F F 164 165 3.225 0.944 0.135 -0.874 EE_G154U155:DA165DC164_FF 56 1.000 -1.707 34.049 -1.639 -0.074 chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Version format compliance Data collection Database references 1 0 1995-12-07 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession BNL Y NDB 1995-06-06 REL G 27 n 1 G 27 A G 26 n 2 G 26 A C 25 n 3 C 25 A G 24 n 4 G 24 A A 23 n 5 A 23 A C 22 n 6 C 22 A C 21 n 7 C 21 A C 30 n 8 C 30 A U 40 n 9 U 40 A G 50 n 10 G 50 A A 60 n 11 A 60 A U 70 n 12 U 70 A G 80 n 13 G 80 A A 90 n 14 A 90 A G 101 n 15 G 101 A G 102 n 16 G 102 A C 103 n 17 C 103 A C 104 n 18 C 104 A G 21 n 19 L G 21 A A 22 n 20 L A 22 A A 23 n 21 L A 23 A A 24 n 22 L A 24 A G 114 n 23 G 114 A G 113 n 24 G 113 A C 112 n 25 C 112 A C 111 n 26 C 111 A G 120 n 27 G 120 A A 130 n 28 A 130 A A 140 n 29 A 140 A A 151 n 30 A 151 A C 152 n 31 C 152 A C 153 n 32 C 153 A G 154 n 33 G 154 A U 155 n 34 U 155 A A 165 n 1 DA 165 B C 164 n 2 DC 164 B G 163 n 3 DG 163 B G 162 n 4 DG 162 B T 161 n 5 DT 161 B C 170 n 6 DC 170 B G 11 n 7 DG 11 B G 12 n 8 DG 12 B T 13 n 9 DT 13 B C 14 n 10 DC 14 B G 15 n 11 DG 15 B C 16 n 12 DC 16 B C 17 n 13 DC 17 B G 27 n 1 G 27 C G 26 n 2 G 26 C C 25 n 3 C 25 C G 24 n 4 G 24 C A 23 n 5 A 23 C C 22 n 6 C 22 C C 21 n 7 C 21 C C 30 n 8 C 30 C U 40 n 9 U 40 C G 50 n 10 G 50 C A 60 n 11 A 60 C U 70 n 12 U 70 C G 80 n 13 G 80 C A 90 n 14 A 90 C G 101 n 15 G 101 C G 102 n 16 G 102 C C 103 n 17 C 103 C C 104 n 18 C 104 C G 21 n 19 L G 21 C A 22 n 20 L A 22 C A 23 n 21 L A 23 C A 24 n 22 L A 24 C G 114 n 23 G 114 C G 113 n 24 G 113 C C 112 n 25 C 112 C C 111 n 26 C 111 C G 120 n 27 G 120 C A 130 n 28 A 130 C A 140 n 29 A 140 C A 151 n 30 A 151 C C 152 n 31 C 152 C C 153 n 32 C 153 C G 154 n 33 G 154 C U 155 n 34 U 155 C A 165 n 1 DA 165 D C 164 n 2 DC 164 D G 163 n 3 DG 163 D G 162 n 4 DG 162 D T 161 n 5 DT 161 D C 170 n 6 DC 170 D G 11 n 7 DG 11 D G 12 n 8 DG 12 D T 13 n 9 DT 13 D C 14 n 10 DC 14 D G 15 n 11 DG 15 D C 16 n 12 DC 16 D C 17 n 13 DC 17 D G 27 n 1 G 27 E G 26 n 2 G 26 E C 25 n 3 C 25 E G 24 n 4 G 24 E A 23 n 5 A 23 E C 22 n 6 C 22 E C 21 n 7 C 21 E C 30 n 8 C 30 E U 40 n 9 U 40 E G 50 n 10 G 50 E A 60 n 11 A 60 E U 70 n 12 U 70 E G 80 n 13 G 80 E A 90 n 14 A 90 E G 101 n 15 G 101 E G 102 n 16 G 102 E C 103 n 17 C 103 E C 104 n 18 C 104 E G 21 n 19 L G 21 E A 22 n 20 L A 22 E A 23 n 21 L A 23 E A 24 n 22 L A 24 E G 114 n 23 G 114 E G 113 n 24 G 113 E C 112 n 25 C 112 E C 111 n 26 C 111 E G 120 n 27 G 120 E A 130 n 28 A 130 E A 140 n 29 A 140 E A 151 n 30 A 151 E C 152 n 31 C 152 E C 153 n 32 C 153 E G 154 n 33 G 154 E U 155 n 34 U 155 E A 165 n 1 DA 165 F C 164 n 2 DC 164 F G 163 n 3 DG 163 F G 162 n 4 DG 162 F T 161 n 5 DT 161 F C 170 n 6 DC 170 F G 11 n 7 DG 11 F G 12 n 8 DG 12 F T 13 n 9 DT 13 F C 14 n 10 DC 14 F G 15 n 11 DG 15 F C 16 n 12 DC 16 F C 17 n 13 DC 17 F author_defined_assembly 2 dimeric author_defined_assembly 2 dimeric author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 L 1 E A 23 0.064 SIDE CHAIN 1 F DG 162 0.051 SIDE CHAIN 1 -2.73 0.40 104.50 101.77 B B B O4' C4' C3' DG DG DG 163 163 163 N 1 -4.23 0.40 104.50 100.27 B B B O4' C4' C3' DC DC DC 170 170 170 N 1 -2.89 0.40 104.50 101.61 B B B O4' C4' C3' DG DG DG 11 11 11 N 1 1.85 0.30 108.30 110.15 B B B O4' C1' N9 DG DG DG 15 15 15 N 1 -2.66 0.40 104.50 101.84 B B B O4' C4' C3' DC DC DC 16 16 16 N 1 -2.50 0.40 104.50 102.00 B B B O4' C4' C3' DC DC DC 17 17 17 N 1 -5.39 0.80 109.40 104.01 D D D O5' C5' C4' DA DA DA 165 165 165 N 1 -2.42 0.40 104.50 102.08 D D D O4' C4' C3' DC DC DC 170 170 170 N 1 -3.63 0.40 104.50 100.87 F F F O4' C4' C3' DC DC DC 170 170 170 N 1 -3.67 0.40 104.50 100.83 F F F O4' C4' C3' DG DG DG 11 11 11 N 1 -3.11 0.40 104.50 101.39 F F F O4' C4' C3' DG DG DG 12 12 12 N 1 -3.30 0.40 104.50 101.20 F F F O4' C4' C3' DC DC DC 14 14 14 N 1 -2.42 0.40 104.50 102.08 F F F O4' C4' C3' DG DG DG 15 15 15 N 1 -2.53 0.40 104.50 101.97 F F F O4' C4' C3' DC DC DC 17 17 17 N 1 A A P OP3 G G 27 27 -0.101 0.012 1.607 1.506 N 1 C C P OP3 G G 27 27 -0.120 0.012 1.607 1.487 N 1 E E P OP3 G G 27 27 -0.117 0.012 1.607 1.490 N 0.305 0.257 0.257 2.600 8.000 24660 95.600 1 2.000 2.600 8.000 0 2994 0 2994 0 0.010 1.35 10.3 0.95 2.600 1HMH 135854 26816 1 refinement X-PLOR THREE-DIMENSIONAL STRUCTURE OF A HAMMERHEAD RIBOZYME 1 N N 2 N N 1 N N 2 N N 1 N N 2 N N hydrog WATSON-CRICK A G 27 A N1 G 1 1_555 B DC 17 B N3 DC 13 1_555 hydrog WATSON-CRICK A G 27 A N2 G 1 1_555 B DC 17 B O2 DC 13 1_555 hydrog WATSON-CRICK A G 27 A O6 G 1 1_555 B DC 17 B N4 DC 13 1_555 hydrog WATSON-CRICK A G 26 A N1 G 2 1_555 B DC 16 B N3 DC 12 1_555 hydrog WATSON-CRICK A G 26 A N2 G 2 1_555 B DC 16 B O2 DC 12 1_555 hydrog WATSON-CRICK A G 26 A O6 G 2 1_555 B DC 16 B N4 DC 12 1_555 hydrog WATSON-CRICK A C 25 A N3 C 3 1_555 B DG 15 B N1 DG 11 1_555 hydrog WATSON-CRICK A C 25 A N4 C 3 1_555 B DG 15 B O6 DG 11 1_555 hydrog WATSON-CRICK A C 25 A O2 C 3 1_555 B DG 15 B N2 DG 11 1_555 hydrog WATSON-CRICK A G 24 A N1 G 4 1_555 B DC 14 B N3 DC 10 1_555 hydrog WATSON-CRICK A G 24 A N2 G 4 1_555 B DC 14 B O2 DC 10 1_555 hydrog WATSON-CRICK A G 24 A O6 G 4 1_555 B DC 14 B N4 DC 10 1_555 hydrog WATSON-CRICK A A 23 A N1 A 5 1_555 B DT 13 B N3 DT 9 1_555 hydrog WATSON-CRICK A A 23 A N6 A 5 1_555 B DT 13 B O4 DT 9 1_555 hydrog WATSON-CRICK A C 22 A N3 C 6 1_555 B DG 12 B N1 DG 8 1_555 hydrog WATSON-CRICK A C 22 A N4 C 6 1_555 B DG 12 B O6 DG 8 1_555 hydrog WATSON-CRICK A C 22 A O2 C 6 1_555 B DG 12 B N2 DG 8 1_555 hydrog WATSON-CRICK A C 21 A N3 C 7 1_555 B DG 11 B N1 DG 7 1_555 hydrog WATSON-CRICK A C 21 A N4 C 7 1_555 B DG 11 B O6 DG 7 1_555 hydrog WATSON-CRICK A C 21 A O2 C 7 1_555 B DG 11 B N2 DG 7 1_555 hydrog C-DC MISPAIR A C 30 A O2 C 8 1_555 B DC 170 B N4 DC 6 1_555 hydrog U-A PAIR A U 70 A O2 U 12 1_555 A A 140 A N6 A 29 1_555 hydrog TYPE_11_PAIR A G 80 A N2 G 13 1_555 A A 130 A N7 A 28 1_555 hydrog TYPE_11_PAIR A G 80 A N3 G 13 1_555 A A 130 A N6 A 28 1_555 hydrog TYPE_11_PAIR A A 90 A N6 A 14 1_555 A G 120 A N3 G 27 1_555 hydrog TYPE_11_PAIR A A 90 A N7 A 14 1_555 A G 120 A N2 G 27 1_555 hydrog WATSON-CRICK A G 101 A N1 G 15 1_555 A C 111 A N3 C 26 1_555 hydrog WATSON-CRICK A G 101 A N2 G 15 1_555 A C 111 A O2 C 26 1_555 hydrog WATSON-CRICK A G 101 A O6 G 15 1_555 A C 111 A N4 C 26 1_555 hydrog WATSON-CRICK A G 102 A N1 G 16 1_555 A C 112 A N3 C 25 1_555 hydrog WATSON-CRICK A G 102 A N2 G 16 1_555 A C 112 A O2 C 25 1_555 hydrog WATSON-CRICK A G 102 A O6 G 16 1_555 A C 112 A N4 C 25 1_555 hydrog WATSON-CRICK A C 103 A N3 C 17 1_555 A G 113 A N1 G 24 1_555 hydrog WATSON-CRICK A C 103 A N4 C 17 1_555 A G 113 A O6 G 24 1_555 hydrog WATSON-CRICK A C 103 A O2 C 17 1_555 A G 113 A N2 G 24 1_555 hydrog WATSON-CRICK A C 104 A N3 C 18 1_555 A G 114 A N1 G 23 1_555 hydrog WATSON-CRICK A C 104 A N4 C 18 1_555 A G 114 A O6 G 23 1_555 hydrog WATSON-CRICK A C 104 A O2 C 18 1_555 A G 114 A N2 G 23 1_555 hydrog G-A MISPAIR L L A G 21 A N2 G 19 1_555 A A 24 A N7 A 22 1_555 hydrog A-A MISPAIR L L A A 22 A N1 A 20 1_555 C A 24 C N6 A 22 1_555 hydrog A-G MISPAIR L A A 24 A N3 A 22 1_555 C G 113 C N2 G 24 1_555 hydrog A-DT PAIR A A 151 A N6 A 30 1_555 B DT 161 B O4 DT 5 1_555 hydrog WATSON-CRICK A C 152 A N3 C 31 1_555 B DG 162 B N1 DG 4 1_555 hydrog WATSON-CRICK A C 152 A N4 C 31 1_555 B DG 162 B O6 DG 4 1_555 hydrog WATSON-CRICK A C 152 A O2 C 31 1_555 B DG 162 B N2 DG 4 1_555 hydrog WATSON-CRICK A C 153 A N3 C 32 1_555 B DG 163 B N1 DG 3 1_555 hydrog WATSON-CRICK A C 153 A N4 C 32 1_555 B DG 163 B O6 DG 3 1_555 hydrog WATSON-CRICK A C 153 A O2 C 32 1_555 B DG 163 B N2 DG 3 1_555 hydrog WATSON-CRICK A G 154 A N1 G 33 1_555 B DC 164 B N3 DC 2 1_555 hydrog WATSON-CRICK A G 154 A N2 G 33 1_555 B DC 164 B O2 DC 2 1_555 hydrog WATSON-CRICK A G 154 A O6 G 33 1_555 B DC 164 B N4 DC 2 1_555 hydrog WATSON-CRICK A U 155 A N3 U 34 1_555 B DA 165 B N1 DA 1 1_555 hydrog WATSON-CRICK A U 155 A O4 U 34 1_555 B DA 165 B N6 DA 1 1_555 hydrog WATSON-CRICK C G 27 C N1 G 1 1_555 D DC 17 D N3 DC 13 1_555 hydrog WATSON-CRICK C G 27 C N2 G 1 1_555 D DC 17 D O2 DC 13 1_555 hydrog WATSON-CRICK C G 27 C O6 G 1 1_555 D DC 17 D N4 DC 13 1_555 hydrog WATSON-CRICK C G 26 C N1 G 2 1_555 D DC 16 D N3 DC 12 1_555 hydrog WATSON-CRICK C G 26 C N2 G 2 1_555 D DC 16 D O2 DC 12 1_555 hydrog WATSON-CRICK C G 26 C O6 G 2 1_555 D DC 16 D N4 DC 12 1_555 hydrog WATSON-CRICK C C 25 C N3 C 3 1_555 D DG 15 D N1 DG 11 1_555 hydrog WATSON-CRICK C C 25 C N4 C 3 1_555 D DG 15 D O6 DG 11 1_555 hydrog WATSON-CRICK C C 25 C O2 C 3 1_555 D DG 15 D N2 DG 11 1_555 hydrog WATSON-CRICK C G 24 C N1 G 4 1_555 D DC 14 D N3 DC 10 1_555 hydrog WATSON-CRICK C G 24 C N2 G 4 1_555 D DC 14 D O2 DC 10 1_555 hydrog WATSON-CRICK C G 24 C O6 G 4 1_555 D DC 14 D N4 DC 10 1_555 hydrog WATSON-CRICK C A 23 C N1 A 5 1_555 D DT 13 D N3 DT 9 1_555 hydrog WATSON-CRICK C A 23 C N6 A 5 1_555 D DT 13 D O4 DT 9 1_555 hydrog WATSON-CRICK C C 22 C N3 C 6 1_555 D DG 12 D N1 DG 8 1_555 hydrog WATSON-CRICK C C 22 C N4 C 6 1_555 D DG 12 D O6 DG 8 1_555 hydrog WATSON-CRICK C C 22 C O2 C 6 1_555 D DG 12 D N2 DG 8 1_555 hydrog WATSON-CRICK C C 21 C N3 C 7 1_555 D DG 11 D N1 DG 7 1_555 hydrog WATSON-CRICK C C 21 C N4 C 7 1_555 D DG 11 D O6 DG 7 1_555 hydrog WATSON-CRICK C C 21 C O2 C 7 1_555 D DG 11 D N2 DG 7 1_555 hydrog C-DC MISPAIR C C 30 C O2 C 8 1_555 D DC 170 D N4 DC 6 1_555 hydrog U-A PAIR C U 70 C O2 U 12 1_555 C A 140 C N6 A 29 1_555 hydrog TYPE_11_PAIR C G 80 C N2 G 13 1_555 C A 130 C N7 A 28 1_555 hydrog TYPE_11_PAIR C G 80 C N3 G 13 1_555 C A 130 C N6 A 28 1_555 hydrog A-G MISPAIR C A 90 C N7 A 14 1_555 C G 120 C N2 G 27 1_555 hydrog WATSON-CRICK C G 101 C N1 G 15 1_555 C C 111 C N3 C 26 1_555 hydrog WATSON-CRICK C G 101 C N2 G 15 1_555 C C 111 C O2 C 26 1_555 hydrog WATSON-CRICK C G 101 C O6 G 15 1_555 C C 111 C N4 C 26 1_555 hydrog WATSON-CRICK C G 102 C N1 G 16 1_555 C C 112 C N3 C 25 1_555 hydrog WATSON-CRICK C G 102 C N2 G 16 1_555 C C 112 C O2 C 25 1_555 hydrog WATSON-CRICK C G 102 C O6 G 16 1_555 C C 112 C N4 C 25 1_555 hydrog WATSON-CRICK C C 103 C N3 C 17 1_555 C G 113 C N1 G 24 1_555 hydrog WATSON-CRICK C C 103 C N4 C 17 1_555 C G 113 C O6 G 24 1_555 hydrog WATSON-CRICK C C 103 C O2 C 17 1_555 C G 113 C N2 G 24 1_555 hydrog WATSON-CRICK C C 104 C N3 C 18 1_555 C G 114 C N1 G 23 1_555 hydrog WATSON-CRICK C C 104 C N4 C 18 1_555 C G 114 C O6 G 23 1_555 hydrog WATSON-CRICK C C 104 C O2 C 18 1_555 C G 114 C N2 G 23 1_555 hydrog G-A MISPAIR L L C G 21 C N2 G 19 1_555 C A 24 C N7 A 22 1_555 hydrog A-DT PAIR C A 151 C N6 A 30 1_555 D DT 161 D O4 DT 5 1_555 hydrog C-DG PAIR C C 152 C N4 C 31 1_555 D DG 163 D O6 DG 3 1_555 hydrog WATSON-CRICK C C 152 C N3 C 31 1_555 D DG 162 D N1 DG 4 1_555 hydrog WATSON-CRICK C C 152 C N4 C 31 1_555 D DG 162 D O6 DG 4 1_555 hydrog WATSON-CRICK C C 152 C O2 C 31 1_555 D DG 162 D N2 DG 4 1_555 hydrog WATSON-CRICK C C 153 C N3 C 32 1_555 D DG 163 D N1 DG 3 1_555 hydrog WATSON-CRICK C C 153 C N4 C 32 1_555 D DG 163 D O6 DG 3 1_555 hydrog WATSON-CRICK C C 153 C O2 C 32 1_555 D DG 163 D N2 DG 3 1_555 hydrog WATSON-CRICK C G 154 C N1 G 33 1_555 D DC 164 D N3 DC 2 1_555 hydrog WATSON-CRICK C G 154 C N2 G 33 1_555 D DC 164 D O2 DC 2 1_555 hydrog WATSON-CRICK C G 154 C O6 G 33 1_555 D DC 164 D N4 DC 2 1_555 hydrog WATSON-CRICK C U 155 C N3 U 34 1_555 D DA 165 D N1 DA 1 1_555 hydrog WATSON-CRICK C U 155 C O4 U 34 1_555 D DA 165 D N6 DA 1 1_555 hydrog WATSON-CRICK E G 27 E N1 G 1 1_555 F DC 17 F N3 DC 13 1_555 hydrog WATSON-CRICK E G 27 E N2 G 1 1_555 F DC 17 F O2 DC 13 1_555 hydrog WATSON-CRICK E G 27 E O6 G 1 1_555 F DC 17 F N4 DC 13 1_555 hydrog WATSON-CRICK E G 26 E N1 G 2 1_555 F DC 16 F N3 DC 12 1_555 hydrog WATSON-CRICK E G 26 E N2 G 2 1_555 F DC 16 F O2 DC 12 1_555 hydrog WATSON-CRICK E G 26 E O6 G 2 1_555 F DC 16 F N4 DC 12 1_555 hydrog WATSON-CRICK E C 25 E N3 C 3 1_555 F DG 15 F N1 DG 11 1_555 hydrog WATSON-CRICK E C 25 E N4 C 3 1_555 F DG 15 F O6 DG 11 1_555 hydrog WATSON-CRICK E C 25 E O2 C 3 1_555 F DG 15 F N2 DG 11 1_555 hydrog WATSON-CRICK E G 24 E N1 G 4 1_555 F DC 14 F N3 DC 10 1_555 hydrog WATSON-CRICK E G 24 E N2 G 4 1_555 F DC 14 F O2 DC 10 1_555 hydrog WATSON-CRICK E G 24 E O6 G 4 1_555 F DC 14 F N4 DC 10 1_555 hydrog WATSON-CRICK E A 23 E N1 A 5 1_555 F DT 13 F N3 DT 9 1_555 hydrog WATSON-CRICK E A 23 E N6 A 5 1_555 F DT 13 F O4 DT 9 1_555 hydrog WATSON-CRICK E C 22 E N3 C 6 1_555 F DG 12 F N1 DG 8 1_555 hydrog WATSON-CRICK E C 22 E N4 C 6 1_555 F DG 12 F O6 DG 8 1_555 hydrog WATSON-CRICK E C 22 E O2 C 6 1_555 F DG 12 F N2 DG 8 1_555 hydrog WATSON-CRICK E C 21 E N3 C 7 1_555 F DG 11 F N1 DG 7 1_555 hydrog WATSON-CRICK E C 21 E N4 C 7 1_555 F DG 11 F O6 DG 7 1_555 hydrog WATSON-CRICK E C 21 E O2 C 7 1_555 F DG 11 F N2 DG 7 1_555 hydrog C-DC MISPAIR E C 30 E O2 C 8 1_555 F DC 170 F N4 DC 6 1_555 hydrog U-A PAIR E U 70 E O2 U 12 1_555 E A 140 E N6 A 29 1_555 hydrog TYPE_11_PAIR E G 80 E N2 G 13 1_555 E A 130 E N7 A 28 1_555 hydrog TYPE_11_PAIR E G 80 E N3 G 13 1_555 E A 130 E N6 A 28 1_555 hydrog TYPE_11_PAIR E A 90 E N6 A 14 1_555 E G 120 E N3 G 27 1_555 hydrog TYPE_11_PAIR E A 90 E N7 A 14 1_555 E G 120 E N2 G 27 1_555 hydrog WATSON-CRICK E G 101 E N1 G 15 1_555 E C 111 E N3 C 26 1_555 hydrog WATSON-CRICK E G 101 E N2 G 15 1_555 E C 111 E O2 C 26 1_555 hydrog WATSON-CRICK E G 101 E O6 G 15 1_555 E C 111 E N4 C 26 1_555 hydrog WATSON-CRICK E G 102 E N1 G 16 1_555 E C 112 E N3 C 25 1_555 hydrog WATSON-CRICK E G 102 E N2 G 16 1_555 E C 112 E O2 C 25 1_555 hydrog WATSON-CRICK E G 102 E O6 G 16 1_555 E C 112 E N4 C 25 1_555 hydrog WATSON-CRICK E C 103 E N3 C 17 1_555 E G 113 E N1 G 24 1_555 hydrog WATSON-CRICK E C 103 E N4 C 17 1_555 E G 113 E O6 G 24 1_555 hydrog WATSON-CRICK E C 103 E O2 C 17 1_555 E G 113 E N2 G 24 1_555 hydrog WATSON-CRICK E C 104 E N3 C 18 1_555 E G 114 E N1 G 23 1_555 hydrog WATSON-CRICK E C 104 E N4 C 18 1_555 E G 114 E O6 G 23 1_555 hydrog WATSON-CRICK E C 104 E O2 C 18 1_555 E G 114 E N2 G 23 1_555 hydrog G-A MISPAIR L L E G 21 E N2 G 19 1_555 E A 24 E N7 A 22 1_555 hydrog A-DT PAIR E A 151 E N6 A 30 1_555 F DT 161 F O4 DT 5 1_555 hydrog WATSON-CRICK E C 152 E N3 C 31 1_555 F DG 162 F N1 DG 4 1_555 hydrog WATSON-CRICK E C 152 E N4 C 31 1_555 F DG 162 F O6 DG 4 1_555 hydrog WATSON-CRICK E C 152 E O2 C 31 1_555 F DG 162 F N2 DG 4 1_555 hydrog WATSON-CRICK E C 153 E N3 C 32 1_555 F DG 163 F N1 DG 3 1_555 hydrog WATSON-CRICK E C 153 E N4 C 32 1_555 F DG 163 F O6 DG 3 1_555 hydrog WATSON-CRICK E C 153 E O2 C 32 1_555 F DG 163 F N2 DG 3 1_555 hydrog WATSON-CRICK E G 154 E N1 G 33 1_555 F DC 164 F N3 DC 2 1_555 hydrog WATSON-CRICK E G 154 E N2 G 33 1_555 F DC 164 F O2 DC 2 1_555 hydrog WATSON-CRICK E G 154 E O6 G 33 1_555 F DC 164 F N4 DC 2 1_555 hydrog WATSON-CRICK E U 155 E N3 U 34 1_555 F DA 165 F N1 DA 1 1_555 hydrog WATSON-CRICK E U 155 E O4 U 34 1_555 F DA 165 F N6 DA 1 1_555 RIBOZYME DNA-RNA HAMMERHEAD RIBOZYME, LOOP, RIBOZYME 1HMH PDB 1 1HMH 1HMH PDB 2 1HMH 27 155 1HMH 27 155 1HMH A 1 1 34 165 17 1HMH 165 17 1HMH B 2 1 13 27 155 1HMH 27 155 1HMH C 1 1 34 165 17 1HMH 165 17 1HMH D 2 1 13 27 155 1HMH 27 155 1HMH E 1 1 34 165 17 1HMH 165 17 1HMH F 2 1 13 154 P 32 2 1