0.011325 0.006539 0.000000 0.000000 0.013077 0.000000 0.000000 0.000000 0.019493 0.00000 0.00000 0.00000 THE IDENTITY OF THE NA 629 ION HAS NOT BEEN CONFIRMED. Bodian, D.L. Jones, E.Y. Harlos, K. Stuart, D.I. Davis, S.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 88.300 88.300 51.300 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Structure STRUE6 2005 0969-2126 2 755 766 10.1016/S0969-2126(94)00076-X 7994575 Crystal structure of the extracellular region of the human cell adhesion molecule CD2 at 2.5 A resolution. 1994 To be Published 0353 Ligand Binding by the Immunoglobulin Superfamily Recognition Molecule Cd2 is Glycosylation Independent UK Nature NATUAS 0006 0028-0836 360 232 Crystal Structure at 2.8 Angstroms Resolution of a Soluble Form of the Cell Adhesion Molecule Cd2 1992 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 21002.076 CD2 1 man polymer 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose 3 man non-polymer 22.990 SODIUM ION 1 syn non-polymer 18.015 water 22 nat water no no KEITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDI YKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITHKWTTSLSAKF KCTAGNKVSKESSVEPVSCPEK KEITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDI YKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITHKWTTSLSAKF KCTAGNKVSKESSVEPVSCPEK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample 9606 OVARY Homo sapiens 2.75 55.24 chem_comp entity pdbx_chem_comp_identifier pdbx_database_status pdbx_entity_nonpoly struct_conn struct_site struct_site_gen repository Initial release Carbohydrate remediation repository Remediation Version format compliance Non-polymer description Version format compliance Data collection Derived calculations Other Structure summary 1 0 1995-02-07 1 1 2008-03-24 1 2 2011-07-13 1 3 2020-07-29 _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_database_status.process_site _pdbx_entity_nonpoly.name _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc Y BNL 1994-08-10 REL NAG 2-acetamido-2-deoxy-beta-D-glucopyranose NA SODIUM ION HOH water THE AUTHOR STATES THAT THE IDENTITY OF THE NA 629 ION HAS NOT BEEN CONFIRMED NAG 500 2 NAG NAG 500 A NAG 501 2 NAG NAG 501 A NAG 502 2 NAG NAG 502 A NA 629 3 NA NA 629 A HOH 600 4 HOH HOH 600 A HOH 601 4 HOH HOH 601 A HOH 602 4 HOH HOH 602 A HOH 603 4 HOH HOH 603 A HOH 604 4 HOH HOH 604 A HOH 605 4 HOH HOH 605 A HOH 609 4 HOH HOH 609 A HOH 610 4 HOH HOH 610 A HOH 611 4 HOH HOH 611 A HOH 617 4 HOH HOH 617 A HOH 618 4 HOH HOH 618 A HOH 619 4 HOH HOH 619 A HOH 621 4 HOH HOH 621 A HOH 622 4 HOH HOH 622 A HOH 623 4 HOH HOH 623 A HOH 625 4 HOH HOH 625 A HOH 630 4 HOH HOH 630 A HOH 631 4 HOH HOH 631 A HOH 632 4 HOH HOH 632 A HOH 642 4 HOH HOH 642 A HOH 643 4 HOH HOH 643 A HOH 646 4 HOH HOH 646 A n 1 1 A n 2 2 A n 3 3 A THR 4 n 4 THR 4 A ASN 5 n 5 ASN 5 A ALA 6 n 6 ALA 6 A LEU 7 n 7 LEU 7 A GLU 8 n 8 GLU 8 A THR 9 n 9 THR 9 A TRP 10 n 10 TRP 10 A GLY 11 n 11 GLY 11 A ALA 12 n 12 ALA 12 A LEU 13 n 13 LEU 13 A GLY 14 n 14 GLY 14 A GLN 15 n 15 GLN 15 A ASP 16 n 16 ASP 16 A ILE 17 n 17 ILE 17 A ASN 18 n 18 ASN 18 A LEU 19 n 19 LEU 19 A ASP 20 n 20 ASP 20 A ILE 21 n 21 ILE 21 A PRO 22 n 22 PRO 22 A SER 23 n 23 SER 23 A PHE 24 n 24 PHE 24 A GLN 25 n 25 GLN 25 A MET 26 n 26 MET 26 A SER 27 n 27 SER 27 A ASP 28 n 28 ASP 28 A ASP 29 n 29 ASP 29 A ILE 30 n 30 ILE 30 A ASP 31 n 31 ASP 31 A ASP 32 n 32 ASP 32 A ILE 33 n 33 ILE 33 A LYS 34 n 34 LYS 34 A TRP 35 n 35 TRP 35 A GLU 36 n 36 GLU 36 A LYS 37 n 37 LYS 37 A THR 38 n 38 THR 38 A SER 39 n 39 SER 39 A ASP 40 n 40 ASP 40 A LYS 41 n 41 LYS 41 A LYS 42 n 42 LYS 42 A LYS 43 n 43 LYS 43 A ILE 44 n 44 ILE 44 A ALA 45 n 45 ALA 45 A GLN 46 n 46 GLN 46 A PHE 47 n 47 PHE 47 A ARG 48 n 48 ARG 48 A LYS 49 n 49 LYS 49 A GLU 50 n 50 GLU 50 A LYS 51 n 51 LYS 51 A GLU 52 n 52 GLU 52 A THR 53 n 53 THR 53 A PHE 54 n 54 PHE 54 A LYS 55 n 55 LYS 55 A GLU 56 n 56 GLU 56 A LYS 57 n 57 LYS 57 A ASP 58 n 58 ASP 58 A THR 59 n 59 THR 59 A TYR 60 n 60 TYR 60 A LYS 61 n 61 LYS 61 A LEU 62 n 62 LEU 62 A PHE 63 n 63 PHE 63 A LYS 64 n 64 LYS 64 A ASN 65 n 65 ASN 65 A GLY 66 n 66 GLY 66 A THR 67 n 67 THR 67 A LEU 68 n 68 LEU 68 A LYS 69 n 69 LYS 69 A ILE 70 n 70 ILE 70 A LYS 71 n 71 LYS 71 A HIS 72 n 72 HIS 72 A LEU 73 n 73 LEU 73 A LYS 74 n 74 LYS 74 A THR 75 n 75 THR 75 A ASP 76 n 76 ASP 76 A ASP 77 n 77 ASP 77 A GLN 78 n 78 GLN 78 A ASP 79 n 79 ASP 79 A ILE 80 n 80 ILE 80 A TYR 81 n 81 TYR 81 A LYS 82 n 82 LYS 82 A VAL 83 n 83 VAL 83 A SER 84 n 84 SER 84 A ILE 85 n 85 ILE 85 A TYR 86 n 86 TYR 86 A ASP 87 n 87 ASP 87 A THR 88 n 88 THR 88 A LYS 89 n 89 LYS 89 A GLY 90 n 90 GLY 90 A LYS 91 n 91 LYS 91 A ASN 92 n 92 ASN 92 A VAL 93 n 93 VAL 93 A LEU 94 n 94 LEU 94 A GLU 95 n 95 GLU 95 A LYS 96 n 96 LYS 96 A ILE 97 n 97 ILE 97 A PHE 98 n 98 PHE 98 A ASP 99 n 99 ASP 99 A LEU 100 n 100 LEU 100 A LYS 101 n 101 LYS 101 A ILE 102 n 102 ILE 102 A GLN 103 n 103 GLN 103 A GLU 104 n 104 GLU 104 A ARG 105 n 105 ARG 105 A VAL 106 n 106 VAL 106 A SER 107 n 107 SER 107 A LYS 108 n 108 LYS 108 A PRO 109 n 109 PRO 109 A LYS 110 n 110 LYS 110 A ILE 111 n 111 ILE 111 A SER 112 n 112 SER 112 A TRP 113 n 113 TRP 113 A THR 114 n 114 THR 114 A CYS 115 n 115 CYS 115 A ILE 116 n 116 ILE 116 A ASN 117 n 117 ASN 117 A THR 118 n 118 THR 118 A THR 119 n 119 THR 119 A LEU 120 n 120 LEU 120 A THR 121 n 121 THR 121 A CYS 122 n 122 CYS 122 A GLU 123 n 123 GLU 123 A VAL 124 n 124 VAL 124 A MET 125 n 125 MET 125 A ASN 126 n 126 ASN 126 A GLY 127 n 127 GLY 127 A THR 128 n 128 THR 128 A ASP 129 n 129 ASP 129 A PRO 130 n 130 PRO 130 A GLU 131 n 131 GLU 131 A LEU 132 n 132 LEU 132 A ASN 133 n 133 ASN 133 A LEU 134 n 134 LEU 134 A TYR 135 n 135 TYR 135 A GLN 136 n 136 GLN 136 A ASP 137 n 137 ASP 137 A GLY 138 n 138 GLY 138 A LYS 139 n 139 LYS 139 A HIS 140 n 140 HIS 140 A LEU 141 n 141 LEU 141 A LYS 142 n 142 LYS 142 A LEU 143 n 143 LEU 143 A SER 144 n 144 SER 144 A GLN 145 n 145 GLN 145 A ARG 146 n 146 ARG 146 A VAL 147 n 147 VAL 147 A ILE 148 n 148 ILE 148 A THR 149 n 149 THR 149 A HIS 150 n 150 HIS 150 A LYS 151 n 151 LYS 151 A TRP 152 n 152 TRP 152 A THR 153 n 153 THR 153 A THR 154 n 154 THR 154 A SER 155 n 155 SER 155 A LEU 156 n 156 LEU 156 A SER 157 n 157 SER 157 A ALA 158 n 158 ALA 158 A LYS 159 n 159 LYS 159 A PHE 160 n 160 PHE 160 A LYS 161 n 161 LYS 161 A CYS 162 n 162 CYS 162 A THR 163 n 163 THR 163 A ALA 164 n 164 ALA 164 A GLY 165 n 165 GLY 165 A ASN 166 n 166 ASN 166 A LYS 167 n 167 LYS 167 A VAL 168 n 168 VAL 168 A SER 169 n 169 SER 169 A LYS 170 n 170 LYS 170 A GLU 171 n 171 GLU 171 A SER 172 n 172 SER 172 A SER 173 n 173 SER 173 A VAL 174 n 174 VAL 174 A GLU 175 n 175 GLU 175 A PRO 176 n 176 PRO 176 A VAL 177 n 177 VAL 177 A SER 178 n 178 SER 178 A CYS 179 n 179 CYS 179 A PRO 180 n 180 PRO 180 A GLU 181 n 181 GLU 181 A LYS 182 n 182 LYS 182 A author_defined_assembly 1 monomeric A TYR 60 A OH TYR 60 1_555 A NA 629 E NA NA 1_555 A ASP 77 A OD1 ASP 77 1_555 111.7 A TYR 60 A OH TYR 60 1_555 A NA 629 E NA NA 1_555 A TYR 81 A OH TYR 81 1_555 145.2 A ASP 77 A OD1 ASP 77 1_555 A NA 629 E NA NA 1_555 A TYR 81 A OH TYR 81 1_555 102.7 A ASN 65 GLYCOSYLATION SITE A ASN 65 ASN A ASN 117 GLYCOSYLATION SITE A ASN 117 ASN A ASN 126 GLYCOSYLATION SITE A ASN 126 ASN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 7 A N LEU 7 A O ILE 97 A O ILE 97 A N LEU 100 A N LEU 100 A O ASP 79 A O ASP 79 A O TYR 86 A O TYR 86 A N ASP 31 A N ASP 31 A O TRP 35 A O TRP 35 A N ILE 44 A N ILE 44 A N GLN 46 A N GLN 46 A O PHE 54 A O PHE 54 A N LEU 19 A N LEU 19 A O LEU 68 A O LEU 68 A N LYS 69 A N LYS 69 A O LYS 61 A O LYS 61 A N THR 114 A N THR 114 A O THR 119 A O THR 119 A N CYS 122 A N CYS 122 A O ILE 148 A O ILE 148 A O SER 144 A O SER 144 A N LEU 132 A N LEU 132 A N TYR 135 A N TYR 135 A O LYS 161 A O LYS 161 A O ALA 164 A O ALA 164 A N GLU 171 A N GLU 171 1 A LYS 1 A LYS 1 1 Y 1 A GLU 2 A GLU 2 1 Y 1 A ILE 3 A ILE 3 1 Y 1 -12.68 1.90 111.40 98.72 A A A CB CA C VAL VAL VAL 83 83 83 N 1 A GLN 25 -161.80 107.37 1 A SER 27 -170.43 -166.53 1 A LYS 41 44.32 83.69 1 A LYS 49 58.00 -176.45 1 A GLU 52 159.89 148.60 1 A HIS 72 46.70 70.22 1 A ASP 129 35.21 58.55 1 A LEU 141 -104.89 -64.38 1 A THR 153 -130.61 -40.55 1 A GLU 181 40.80 73.35 36. 0.193 0.193 2.5 24. 7181 1 2.5 24. 22 1512 43 0 1447 1.97 1HNF 7181 1 87. model building X-PLOR refinement X-PLOR phasing X-PLOR CD2 (HUMAN) CRYSTAL STRUCTURE OF THE EXTRACELLULAR REGION OF THE HUMAN CELL ADHESION MOLECULE CD2 AT 2.5 ANGSTROMS RESOLUTION 1 N N 2 N N 2 N N 2 N N 3 N N 4 N N A SER 39 A SER 39 HELX_P A LYS 41 A LYS 41 5 1 3 A LYS 49 A LYS 49 HELX_P A LYS 51 A LYS 51 5 2 3 A LYS 74 A LYS 74 HELX_P A GLN 78 A GLN 78 5 3 5 disulf 2.005 A CYS 115 A SG CYS 115 1_555 A CYS 179 A SG CYS 179 1_555 disulf 2.014 A CYS 122 A SG CYS 122 1_555 A CYS 162 A SG CYS 162 1_555 covale 1.459 one N-Glycosylation A ASN 65 A ND2 ASN 65 1_555 A NAG 500 B C1 NAG 1_555 covale 1.450 one N-Glycosylation A ASN 117 A ND2 ASN 117 1_555 A NAG 501 C C1 NAG 1_555 covale 1.440 one N-Glycosylation A ASN 126 A ND2 ASN 126 1_555 A NAG 502 D C1 NAG 1_555 metalc 2.494 A TYR 60 A OH TYR 60 1_555 A NA 629 E NA NA 1_555 metalc 2.781 A ASP 77 A OD1 ASP 77 1_555 A NA 629 E NA NA 1_555 metalc 2.634 A TYR 81 A OH TYR 81 1_555 A NA 629 E NA NA 1_555 T LYMPHOCYTE ADHESION GLYCOPROTEIN T LYMPHOCYTE ADHESION GLYCOPROTEIN CD2_HUMAN UNP 1 1 P06729 MSFPCKFVASFLLIFNVSSKGAVSKEITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKE KDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQ DGKHLKLSQRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVSCPEKGLDIYLIIGICGGGSLLMVFVALLVFYITKRKKQ RSRRNDEELETRAHRVATEERGRKPQQIPASTPQNPATSQHPPPPPGHRSQAPSHRPPPPGHRVQHQPQKRPPAPSGTQV HQQKGPPLPRPRVQPKPPHGAAENSLSPSSN 25 206 1HNF 1 182 P06729 A 1 1 182 6 3 3 4 parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LEU 7 A LEU 7 A ALA 12 A ALA 12 A ASN 92 A ASN 92 A GLN 103 A GLN 103 A ASP 79 A ASP 79 A ASP 87 A ASP 87 A ILE 30 A ILE 30 A LYS 37 A LYS 37 A LYS 43 A LYS 43 A PHE 47 A PHE 47 A THR 53 A THR 53 A LYS 55 A LYS 55 A ILE 17 A ILE 17 A LEU 19 A LEU 19 A LEU 68 A LEU 68 A ILE 70 A ILE 70 A TYR 60 A TYR 60 A LEU 62 A LEU 62 A LYS 110 A LYS 110 A THR 114 A THR 114 A THR 119 A THR 119 A GLU 123 A GLU 123 A ILE 148 A ILE 148 A LYS 151 A LYS 151 A HIS 140 A HIS 140 A SER 144 A SER 144 A GLU 131 A GLU 131 A GLN 136 A GLN 136 A LEU 156 A LEU 156 A GLY 165 A GLY 165 A LYS 170 A LYS 170 A CYS 179 A CYS 179 152 P 31 2 1