1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Denisov, A.Y.
Gehring, K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
29
4284
4293
10.1093/nar/29.21.4284
11691916
Solution structure of an arabinonucleic acid (ANA)/RNA duplex in a chimeric hairpin: comparison with 2'-fluoro-ANA/RNA and DNA/RNA hybrids.
2001
US
NUCLEOSIDES NUCLEOTIDES NUCLEIC ACIDS
1525-7770
20
429
440
10.1081/NCN-100002317
Properties of Arabinonucleic Acids (ANA & 2'F-ANA): Implications for the Design of Antisense Therapeutics that Invoke RNase H Cleavage of RNA
2001
10.2210/pdb1hoq/pdb
pdb_00001hoq
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
3718.377
DNA/RNA (5'-R(*GP*GP*AP*C)-D(P*TP*TP*CP*GP*GP*TP*CP*C)-3')
1
syn
polymer
no
no
GGAC(DT)(DT)(DC)(DG)(DG)(DT)(DC)(DC)
GGACTTCGGTCC
A
polydeoxyribonucleotide/polyribonucleotide hybrid
n
n
n
n
n
n
n
n
n
n
n
n
-4.042
1
19
A
1
A
12
-3.249
A_G1:DC12_A
1
1.652
-0.602
-0.085
-0.431
-9.401
1
19
A
2
A
11
5.181
A_G2:DC11_A
2
-17.732
-0.894
-0.347
-0.447
-6.301
1
20
A
3
A
10
1.313
A_A3:DT10_A
3
-7.846
-0.274
0.038
-0.367
16.958
1
19
A
4
A
9
-1.050
A_C4:DG9_A
4
-13.137
0.681
-0.152
-0.470
-18.946
A
6
A
8
-63.008
A_DT6:DG8_A
5
10.208
-0.941
0.016
3.679
3.113
36.100
A
A
1
2
7.879
A
A
12
11
3.348
4.853
0.277
-1.627
AA_G1G2:DC11DC12_AA
1
5.194
-8.433
35.416
-3.310
0.286
2.662
31.658
A
A
2
3
12.294
A
A
11
10
2.949
6.652
0.038
-1.034
AA_G2A3:DT10DC11_AA
2
-2.520
4.657
30.869
-2.962
-0.474
2.569
36.166
A
A
3
4
3.786
A
A
10
9
2.635
2.346
-0.200
-0.518
AA_A3C4:DG9DT10_AA
3
3.396
-5.482
35.937
-1.098
0.703
4.594
89.226
A
A
4
6
14.760
A
A
9
8
4.834
19.891
0.584
0.604
AA_C4DT6:DG8DG9_AA
4
47.516
-35.258
75.556
-0.247
1.201
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
2001-11-07
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
1HO6 contains the same hairpin but with ANA/RNA stem
1FC8 contains the same hairpin but with 2'F-ANA/RNA stem
RCSB
Y
RCSB
2000-12-11
REL
REL
Solid phase synthesis, phosphoramidite chemistry
sample
This structure was determined using standard 2D homo- and heteronuclear techniques: 2D-NOESY, DQF-COSY, TOCSY, H,C-HMQC, H,P-HetCOSY
all calculated structures submitted
10
10
DQF-COSY
2D-NOESY
7.0
1
atm
293
K
The structures were refined by NMR-restrained molecular dynamics (14 ps, 300-1000 K) with final energy minimization
simulated annealing
the hairpin stem structure closest to the average
1mM hairpin
D2O
1mM hairpin
H2O/D2O
Brunger
refinement
X-PLOR
3.843
Brunger
data analysis
X-PLOR
500
Bruker
DRX
G
1
n
1
G
1
A
G
2
n
2
G
2
A
A
3
n
3
A
3
A
C
4
n
4
C
4
A
T
5
n
5
DT
5
A
T
6
n
6
DT
6
A
C
7
n
7
DC
7
A
G
8
n
8
DG
8
A
G
9
n
9
DG
9
A
T
10
n
10
DT
10
A
C
11
n
11
DC
11
A
C
12
n
12
DC
12
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
2
A
A
HO2'
O5'
G
G
1
2
1.53
3
A
A
HO2'
O5'
G
G
1
2
1.54
4
A
A
HO2'
O5'
G
G
1
2
1.52
4
A
A
H1'
O6
DT
DG
5
8
1.59
5
A
A
HO2'
O5'
G
G
1
2
1.55
6
A
A
HO2'
O5'
G
G
1
2
1.50
6
A
A
N1
H3
A
DT
3
10
1.59
7
A
A
HO2'
O5'
G
G
1
2
1.51
8
A
A
HO2'
O5'
G
G
1
2
1.49
9
A
A
HO2'
O5'
G
G
1
2
1.51
9
A
A
O2
H21
C
DG
4
9
1.56
10
A
A
O2
H21
C
DG
4
9
1.58
1
4.88
0.50
113.10
117.98
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
1
-2.58
0.40
106.40
103.82
A
A
A
C8
N9
C4
G
G
G
1
1
1
N
1
4.72
0.50
113.10
117.82
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
1
-2.71
0.40
106.40
103.69
A
A
A
C8
N9
C4
G
G
G
2
2
2
N
1
3.71
0.50
113.80
117.51
A
A
A
N7
C8
N9
A
A
A
3
3
3
N
1
3.26
0.30
108.30
111.56
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
1
2.68
0.30
108.30
110.98
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
1
2.74
0.30
108.30
111.04
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
1
2.14
0.30
108.30
110.44
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
1
4.59
0.50
113.10
117.69
A
A
A
N7
C8
N9
DG
DG
DG
8
8
8
N
1
-2.50
0.40
106.40
103.90
A
A
A
C8
N9
C4
DG
DG
DG
8
8
8
N
1
3.58
0.30
108.30
111.88
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
1
4.69
0.50
113.10
117.79
A
A
A
N7
C8
N9
DG
DG
DG
9
9
9
N
1
-2.45
0.40
106.40
103.95
A
A
A
C8
N9
C4
DG
DG
DG
9
9
9
N
1
2.66
0.30
108.30
110.96
A
A
A
O4'
C1'
N1
DT
DT
DT
10
10
10
N
1
3.39
0.30
108.30
111.69
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
1
2.85
0.30
108.30
111.15
A
A
A
O4'
C1'
N1
DC
DC
DC
12
12
12
N
2
4.41
0.50
113.10
117.51
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
2
4.99
0.50
113.10
118.09
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
2
3.85
0.50
113.80
117.65
A
A
A
N7
C8
N9
A
A
A
3
3
3
N
2
2.78
0.30
108.30
111.08
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
2
3.02
0.30
108.30
111.32
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
2
2.83
0.30
108.30
111.13
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
2
3.42
0.30
108.30
111.72
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
2
4.54
0.50
113.10
117.64
A
A
A
N7
C8
N9
DG
DG
DG
8
8
8
N
2
-2.64
0.40
106.40
103.76
A
A
A
C8
N9
C4
DG
DG
DG
8
8
8
N
2
3.52
0.30
108.30
111.82
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
2
4.71
0.50
113.10
117.81
A
A
A
N7
C8
N9
DG
DG
DG
9
9
9
N
2
-2.44
0.40
106.40
103.96
A
A
A
C8
N9
C4
DG
DG
DG
9
9
9
N
2
2.83
0.30
108.30
111.13
A
A
A
O4'
C1'
N1
DT
DT
DT
10
10
10
N
2
3.87
0.30
108.30
112.17
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
2
2.92
0.30
108.30
111.22
A
A
A
O4'
C1'
N1
DC
DC
DC
12
12
12
N
3
4.50
0.50
113.10
117.60
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
3
5.04
0.50
113.10
118.14
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
3
-2.56
0.40
106.40
103.84
A
A
A
C8
N9
C4
G
G
G
2
2
2
N
3
3.79
0.50
113.80
117.59
A
A
A
N7
C8
N9
A
A
A
3
3
3
N
3
2.98
0.30
108.30
111.28
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
3
3.14
0.30
108.30
111.44
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
3
3.16
0.30
108.30
111.46
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
3
4.65
0.50
113.10
117.75
A
A
A
N7
C8
N9
DG
DG
DG
8
8
8
N
3
-2.76
0.40
106.40
103.64
A
A
A
C8
N9
C4
DG
DG
DG
8
8
8
N
3
3.43
0.30
108.30
111.73
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
3
4.67
0.50
113.10
117.77
A
A
A
N7
C8
N9
DG
DG
DG
9
9
9
N
3
-2.58
0.40
106.40
103.82
A
A
A
C8
N9
C4
DG
DG
DG
9
9
9
N
3
2.90
0.30
108.30
111.20
A
A
A
O4'
C1'
N1
DT
DT
DT
10
10
10
N
3
3.41
0.30
108.30
111.71
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
3
2.77
0.30
108.30
111.07
A
A
A
O4'
C1'
N1
DC
DC
DC
12
12
12
N
4
4.47
0.50
113.10
117.57
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
4
5.00
0.50
113.10
118.10
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
4
3.81
0.50
113.80
117.61
A
A
A
N7
C8
N9
A
A
A
3
3
3
N
4
2.97
0.30
108.30
111.27
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
4
3.09
0.30
108.30
111.39
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
4
2.87
0.30
108.30
111.17
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
4
4.54
0.30
108.30
112.84
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
4
4.76
0.50
113.10
117.86
A
A
A
N7
C8
N9
DG
DG
DG
8
8
8
N
4
-2.63
0.40
106.40
103.77
A
A
A
C8
N9
C4
DG
DG
DG
8
8
8
N
4
3.68
0.30
108.30
111.98
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
4
4.68
0.50
113.10
117.78
A
A
A
N7
C8
N9
DG
DG
DG
9
9
9
N
4
-2.68
0.40
106.40
103.72
A
A
A
C8
N9
C4
DG
DG
DG
9
9
9
N
4
2.94
0.30
108.30
111.24
A
A
A
O4'
C1'
N1
DT
DT
DT
10
10
10
N
4
3.78
0.30
108.30
112.08
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
4
2.98
0.30
108.30
111.28
A
A
A
O4'
C1'
N1
DC
DC
DC
12
12
12
N
5
4.52
0.50
113.10
117.62
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
5
5.04
0.50
113.10
118.14
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
5
3.83
0.50
113.80
117.63
A
A
A
N7
C8
N9
A
A
A
3
3
3
N
5
3.13
0.30
108.30
111.43
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
5
2.74
0.30
108.30
111.04
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
5
3.06
0.30
108.30
111.36
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
5
2.51
0.30
108.30
110.81
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
5
4.82
0.50
113.10
117.92
A
A
A
N7
C8
N9
DG
DG
DG
8
8
8
N
5
-2.81
0.40
106.40
103.59
A
A
A
C8
N9
C4
DG
DG
DG
8
8
8
N
5
3.23
0.30
108.30
111.53
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
5
4.54
0.50
113.10
117.64
A
A
A
N7
C8
N9
DG
DG
DG
9
9
9
N
5
-2.47
0.40
106.40
103.93
A
A
A
C8
N9
C4
DG
DG
DG
9
9
9
N
5
2.93
0.30
108.30
111.23
A
A
A
O4'
C1'
N1
DT
DT
DT
10
10
10
N
5
3.53
0.30
108.30
111.83
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
5
3.06
0.30
108.30
111.36
A
A
A
O4'
C1'
N1
DC
DC
DC
12
12
12
N
6
4.48
0.50
113.10
117.58
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
6
5.08
0.50
113.10
118.18
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
6
-2.42
0.40
106.40
103.98
A
A
A
C8
N9
C4
G
G
G
2
2
2
N
6
3.79
0.50
113.80
117.59
A
A
A
N7
C8
N9
A
A
A
3
3
3
N
6
3.11
0.30
108.30
111.41
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
6
2.67
0.30
108.30
110.97
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
6
2.58
0.30
108.30
110.88
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
6
2.48
0.30
108.30
110.78
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
6
4.70
0.50
113.10
117.80
A
A
A
N7
C8
N9
DG
DG
DG
8
8
8
N
6
-2.70
0.40
106.40
103.70
A
A
A
C8
N9
C4
DG
DG
DG
8
8
8
N
6
4.25
0.30
108.30
112.55
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
6
4.59
0.50
113.10
117.69
A
A
A
N7
C8
N9
DG
DG
DG
9
9
9
N
6
2.86
0.30
108.30
111.16
A
A
A
O4'
C1'
N1
DT
DT
DT
10
10
10
N
6
3.78
0.30
108.30
112.08
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
6
2.97
0.30
108.30
111.27
A
A
A
O4'
C1'
N1
DC
DC
DC
12
12
12
N
7
4.47
0.50
113.10
117.57
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
7
5.04
0.50
113.10
118.14
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
7
-2.50
0.40
106.40
103.90
A
A
A
C8
N9
C4
G
G
G
2
2
2
N
7
3.80
0.50
113.80
117.60
A
A
A
N7
C8
N9
A
A
A
3
3
3
N
7
3.21
0.30
108.30
111.51
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
7
2.98
0.30
108.30
111.28
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
7
2.56
0.30
108.30
110.86
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
7
3.34
0.30
108.30
111.64
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
7
4.68
0.50
113.10
117.78
A
A
A
N7
C8
N9
DG
DG
DG
8
8
8
N
7
-2.72
0.40
106.40
103.68
A
A
A
C8
N9
C4
DG
DG
DG
8
8
8
N
7
3.15
0.30
108.30
111.45
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
7
4.59
0.50
113.10
117.69
A
A
A
N7
C8
N9
DG
DG
DG
9
9
9
N
7
2.73
0.30
108.30
111.03
A
A
A
O4'
C1'
N1
DT
DT
DT
10
10
10
N
7
3.79
0.30
108.30
112.09
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
7
2.84
0.30
108.30
111.14
A
A
A
O4'
C1'
N1
DC
DC
DC
12
12
12
N
8
4.47
0.50
113.10
117.57
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
8
5.03
0.50
113.10
118.13
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
8
-2.44
0.40
106.40
103.96
A
A
A
C8
N9
C4
G
G
G
2
2
2
N
8
3.79
0.50
113.80
117.59
A
A
A
N7
C8
N9
A
A
A
3
3
3
N
8
3.04
0.30
108.30
111.34
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
8
2.72
0.30
108.30
111.02
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
8
3.18
0.30
108.30
111.48
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
8
3.11
0.30
108.30
111.41
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
8
4.72
0.50
113.10
117.82
A
A
A
N7
C8
N9
DG
DG
DG
8
8
8
N
8
-2.69
0.40
106.40
103.71
A
A
A
C8
N9
C4
DG
DG
DG
8
8
8
N
8
3.84
0.30
108.30
112.14
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
8
4.71
0.50
113.10
117.81
A
A
A
N7
C8
N9
DG
DG
DG
9
9
9
N
8
2.91
0.30
108.30
111.21
A
A
A
O4'
C1'
N1
DT
DT
DT
10
10
10
N
8
3.62
0.30
108.30
111.92
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
8
2.95
0.30
108.30
111.25
A
A
A
O4'
C1'
N1
DC
DC
DC
12
12
12
N
9
4.59
0.50
113.10
117.69
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
9
4.95
0.50
113.10
118.05
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
9
-2.41
0.40
106.40
103.99
A
A
A
C8
N9
C4
G
G
G
2
2
2
N
9
3.67
0.50
113.80
117.47
A
A
A
N7
C8
N9
A
A
A
3
3
3
N
9
2.87
0.30
108.30
111.17
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
9
3.12
0.30
108.30
111.42
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
9
2.09
0.30
108.30
110.39
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
9
2.14
0.30
108.30
110.44
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
9
4.80
0.50
113.10
117.90
A
A
A
N7
C8
N9
DG
DG
DG
8
8
8
N
9
-2.77
0.40
106.40
103.63
A
A
A
C8
N9
C4
DG
DG
DG
8
8
8
N
9
4.34
0.30
108.30
112.64
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
9
4.65
0.50
113.10
117.75
A
A
A
N7
C8
N9
DG
DG
DG
9
9
9
N
9
2.97
0.30
108.30
111.27
A
A
A
O4'
C1'
N1
DT
DT
DT
10
10
10
N
9
3.64
0.30
108.30
111.94
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
9
2.98
0.30
108.30
111.28
A
A
A
O4'
C1'
N1
DC
DC
DC
12
12
12
N
10
4.93
0.50
113.10
118.03
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
10
-2.65
0.40
106.40
103.75
A
A
A
C8
N9
C4
G
G
G
1
1
1
N
10
4.68
0.50
113.10
117.78
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
10
-2.71
0.40
106.40
103.69
A
A
A
C8
N9
C4
G
G
G
2
2
2
N
10
3.92
0.50
113.80
117.72
A
A
A
N7
C8
N9
A
A
A
3
3
3
N
10
-2.42
0.40
105.80
103.38
A
A
A
C8
N9
C4
A
A
A
3
3
3
N
10
3.61
0.30
108.30
111.91
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
10
2.58
0.30
108.30
110.88
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
10
2.47
0.30
108.30
110.77
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
10
2.88
0.30
108.30
111.18
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
10
4.83
0.50
113.10
117.93
A
A
A
N7
C8
N9
DG
DG
DG
8
8
8
N
10
-2.77
0.40
106.40
103.63
A
A
A
C8
N9
C4
DG
DG
DG
8
8
8
N
10
3.70
0.30
108.30
112.00
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
10
4.64
0.50
113.10
117.74
A
A
A
N7
C8
N9
DG
DG
DG
9
9
9
N
10
2.98
0.30
108.30
111.28
A
A
A
O4'
C1'
N1
DT
DT
DT
10
10
10
N
10
3.56
0.30
108.30
111.86
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
10
2.91
0.30
108.30
111.21
A
A
A
O4'
C1'
N1
DC
DC
DC
12
12
12
N
CHIMERIC RNA/DNA HAIRPIN
1
N
N
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
A
DC
12
A
N3
DC
12
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
A
DC
12
A
O2
DC
12
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
A
DC
12
A
N4
DC
12
1_555
hydrog
WATSON-CRICK
A
G
2
A
N1
G
2
1_555
A
DC
11
A
N3
DC
11
1_555
hydrog
WATSON-CRICK
A
G
2
A
N2
G
2
1_555
A
DC
11
A
O2
DC
11
1_555
hydrog
WATSON-CRICK
A
G
2
A
O6
G
2
1_555
A
DC
11
A
N4
DC
11
1_555
hydrog
WATSON-CRICK
A
A
3
A
N1
A
3
1_555
A
DT
10
A
N3
DT
10
1_555
hydrog
WATSON-CRICK
A
A
3
A
N6
A
3
1_555
A
DT
10
A
O4
DT
10
1_555
hydrog
WATSON-CRICK
A
C
4
A
N3
C
4
1_555
A
DG
9
A
N1
DG
9
1_555
hydrog
WATSON-CRICK
A
C
4
A
N4
C
4
1_555
A
DG
9
A
O6
DG
9
1_555
hydrog
WATSON-CRICK
A
C
4
A
O2
C
4
1_555
A
DG
9
A
N2
DG
9
1_555
hydrog
DT-DG MISPAIR
A
DT
5
A
O4
DT
5
1_555
A
DG
9
A
N1
DG
9
1_555
hydrog
DT-DG MISPAIR
A
DT
6
A
N3
DT
6
1_555
A
DG
8
A
N7
DG
8
1_555
DNA, RNA
Hairpin, DNA, RNA
1HOQ
PDB
1
1HOQ
1
12
1HOQ
1
12
1HOQ
A
1
1
12