0.012943 0.000000 0.002704 0.000000 0.027556 0.000000 0.000000 0.000000 0.019945 0.00000 0.00000 0.00000 SER A 79 - GLY A 80 OMEGA = 320.79 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION CIS PROLINE - PRO A 99 Nienaber, V.L. Birktoft, J.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 101.80 90.00 77.260 36.290 51.220 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 O3 118.131 TERT-BUTYL HYDROGEN CARBONATE non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 32 11469 11475 10.1021/bi00094a001 8105890 A glutamic acid specific serine protease utilizes a novel histidine triad in substrate binding. 1993 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 18279.891 Glutamic acid specific protease 3.4.21.82 1 man polymer 486.515 BOC-ALA-ALA-PRO-GLU PEPTIDE 1 syn polymer 18.015 water 128 nat water Glutamic acid-specific protease no no VLGGGAIYGGGSRCSAAFNVTKGGARYFVTAGHCTNISANWSASSGGSVVGVREGTSFPTNDYGIVRYTDGSSPAGTVDL YNGSTQDISSAANAVVGQAIKKSGSTTKVTSGTVTAVNVTVNYGDGPVYNMVRTTACSAGGDSGGAHFAGSVALGIHSGS SGCSGTAGSAIHQPVTEALSAYGVTVY VLGGGAIYGGGSRCSAAFNVTKGGARYFVTAGHCTNISANWSASSGGSVVGVREGTSFPTNDYGIVRYTDGSSPAGTVDL YNGSTQDISSAANAVVGQAIKKSGSTTKVTSGTVTAVNVTVNYGDGPVYNMVRTTACSAGGDSGGAHFAGSVALGIHSGS SGCSGTAGSAIHQPVTEALSAYGVTVY A polypeptide(L) no yes (BOC)AAPE XAAPE B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample sprE 1911 Streptomyces griseus 1.87 34.30 pdbx_database_status struct_conf struct_conf_type repository Initial release Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance Other Derived calculations Other 1 0 1995-07-10 1 1 2008-03-03 1 2 2011-07-13 1 3 2012-12-12 1 4 2017-11-29 _pdbx_database_status.process_site Y BNL 1993-04-28 REL HOH water HOH 401 FITS THE CRITERIA OF A SODIUM ATOM BUT WAS REFINED AS AN ORDERED SOLVENT. Inhibitor N-(tert-butoxycarbonyl)-L-alanyl-L-alanyl-L-prolyl-L-glutamic acid Peptide-like HOH 401 3 HOH HOH 401 A HOH 402 3 HOH HOH 402 A HOH 403 3 HOH HOH 403 A HOH 404 3 HOH HOH 404 A HOH 405 3 HOH HOH 405 A HOH 406 3 HOH HOH 406 A HOH 407 3 HOH HOH 407 A HOH 408 3 HOH HOH 408 A HOH 409 3 HOH HOH 409 A HOH 410 3 HOH HOH 410 A HOH 411 3 HOH HOH 411 A HOH 412 3 HOH HOH 412 A HOH 413 3 HOH HOH 413 A HOH 414 3 HOH HOH 414 A HOH 415 3 HOH HOH 415 A HOH 416 3 HOH HOH 416 A HOH 417 3 HOH HOH 417 A HOH 418 3 HOH HOH 418 A HOH 419 3 HOH HOH 419 A HOH 420 3 HOH HOH 420 A HOH 421 3 HOH HOH 421 A HOH 422 3 HOH HOH 422 A HOH 423 3 HOH HOH 423 A HOH 424 3 HOH HOH 424 A HOH 425 3 HOH HOH 425 A HOH 426 3 HOH HOH 426 A HOH 428 3 HOH HOH 428 A HOH 429 3 HOH HOH 429 A HOH 430 3 HOH HOH 430 A HOH 431 3 HOH HOH 431 A HOH 432 3 HOH HOH 432 A HOH 433 3 HOH HOH 433 A HOH 434 3 HOH HOH 434 A HOH 435 3 HOH HOH 435 A HOH 436 3 HOH HOH 436 A HOH 437 3 HOH HOH 437 A HOH 438 3 HOH HOH 438 A HOH 439 3 HOH HOH 439 A HOH 440 3 HOH HOH 440 A HOH 441 3 HOH HOH 441 A HOH 442 3 HOH HOH 442 A HOH 443 3 HOH HOH 443 A HOH 444 3 HOH HOH 444 A HOH 445 3 HOH HOH 445 A HOH 446 3 HOH HOH 446 A HOH 447 3 HOH HOH 447 A HOH 448 3 HOH HOH 448 A HOH 449 3 HOH HOH 449 A HOH 450 3 HOH HOH 450 A HOH 451 3 HOH HOH 451 A HOH 452 3 HOH HOH 452 A HOH 453 3 HOH HOH 453 A HOH 454 3 HOH HOH 454 A HOH 455 3 HOH HOH 455 A HOH 456 3 HOH HOH 456 A HOH 457 3 HOH HOH 457 A HOH 458 3 HOH HOH 458 A HOH 459 3 HOH HOH 459 A HOH 460 3 HOH HOH 460 A HOH 461 3 HOH HOH 461 A HOH 462 3 HOH HOH 462 A HOH 463 3 HOH HOH 463 A HOH 464 3 HOH HOH 464 A HOH 465 3 HOH HOH 465 A HOH 466 3 HOH HOH 466 A HOH 467 3 HOH HOH 467 A HOH 468 3 HOH HOH 468 A HOH 469 3 HOH HOH 469 A HOH 470 3 HOH HOH 470 A HOH 471 3 HOH HOH 471 A HOH 472 3 HOH HOH 472 A HOH 473 3 HOH HOH 473 A HOH 474 3 HOH HOH 474 A HOH 475 3 HOH HOH 475 A HOH 476 3 HOH HOH 476 A HOH 477 3 HOH HOH 477 A HOH 478 3 HOH HOH 478 A HOH 479 3 HOH HOH 479 A HOH 480 3 HOH HOH 480 A HOH 481 3 HOH HOH 481 A HOH 482 3 HOH HOH 482 A HOH 484 3 HOH HOH 484 A HOH 485 3 HOH HOH 485 A HOH 486 3 HOH HOH 486 A HOH 487 3 HOH HOH 487 A HOH 488 3 HOH HOH 488 A HOH 489 3 HOH HOH 489 A HOH 490 3 HOH HOH 490 A HOH 491 3 HOH HOH 491 A HOH 492 3 HOH HOH 492 A HOH 493 3 HOH HOH 493 A HOH 494 3 HOH HOH 494 A HOH 495 3 HOH HOH 495 A HOH 496 3 HOH HOH 496 A HOH 497 3 HOH HOH 497 A HOH 498 3 HOH HOH 498 A HOH 499 3 HOH HOH 499 A HOH 500 3 HOH HOH 500 A HOH 501 3 HOH HOH 501 A HOH 502 3 HOH HOH 502 A HOH 503 3 HOH HOH 503 A HOH 504 3 HOH HOH 504 A HOH 505 3 HOH HOH 505 A HOH 506 3 HOH HOH 506 A HOH 507 3 HOH HOH 507 A HOH 508 3 HOH HOH 508 A HOH 509 3 HOH HOH 509 A HOH 510 3 HOH HOH 510 A HOH 511 3 HOH HOH 511 A HOH 512 3 HOH HOH 512 A HOH 513 3 HOH HOH 513 A HOH 514 3 HOH HOH 514 A HOH 515 3 HOH HOH 515 A HOH 516 3 HOH HOH 516 A HOH 517 3 HOH HOH 517 A HOH 518 3 HOH HOH 518 A HOH 519 3 HOH HOH 519 A HOH 520 3 HOH HOH 520 A HOH 521 3 HOH HOH 521 A HOH 522 3 HOH HOH 522 A HOH 523 3 HOH HOH 523 A HOH 524 3 HOH HOH 524 A HOH 525 3 HOH HOH 525 A HOH 526 3 HOH HOH 526 A HOH 527 3 HOH HOH 527 A HOH 528 3 HOH HOH 528 A HOH 427 3 HOH HOH 427 B HOH 483 3 HOH HOH 483 B VAL 16 n 1 VAL 16 A LEU 17 n 2 LEU 17 A GLY 18 n 3 GLY 18 A GLY 19 n 4 GLY 19 A GLY 29 n 5 GLY 29 A ALA 30 n 6 ALA 30 A ILE 31 n 7 ILE 31 A TYR 32 n 8 TYR 32 A GLY 33 n 9 GLY 33 A GLY 34 n 10 GLY 34 A GLY 39 n 11 GLY 39 A SER 40 n 12 SER 40 A ARG 41 n 13 ARG 41 A CYS 42 n 14 CYS 42 A SER 43 n 15 SER 43 A ALA 44 n 16 ALA 44 A ALA 45 n 17 ALA 45 A PHE 46 n 18 PHE 46 A ASN 47 n 19 ASN 47 A VAL 48 n 20 VAL 48 A THR 48 n 21 A THR 48 A LYS 48 n 22 B LYS 48 A GLY 48 n 23 C GLY 48 A GLY 48 n 24 D GLY 48 A ALA 49 n 25 ALA 49 A ARG 50 n 26 ARG 50 A TYR 51 n 27 TYR 51 A PHE 52 n 28 PHE 52 A VAL 53 n 29 VAL 53 A THR 54 n 30 THR 54 A ALA 55 n 31 ALA 55 A GLY 56 n 32 GLY 56 A HIS 57 n 33 HIS 57 A CYS 58 n 34 CYS 58 A THR 59 n 35 THR 59 A ASN 62 n 36 ASN 62 A ILE 63 n 37 ILE 63 A SER 64 n 38 SER 64 A ALA 65 n 39 ALA 65 A ASN 65 n 40 A ASN 65 A TRP 66 n 41 TRP 66 A SER 67 n 42 SER 67 A ALA 68 n 43 ALA 68 A SER 78 n 44 SER 78 A SER 79 n 45 SER 79 A GLY 80 n 46 GLY 80 A GLY 81 n 47 GLY 81 A SER 82 n 48 SER 82 A VAL 84 n 49 VAL 84 A VAL 85 n 50 VAL 85 A GLY 86 n 51 GLY 86 A VAL 87 n 52 VAL 87 A ARG 88 n 53 ARG 88 A GLU 89 n 54 GLU 89 A GLY 90 n 55 GLY 90 A THR 91 n 56 THR 91 A SER 93 n 57 SER 93 A PHE 94 n 58 PHE 94 A PRO 99 n 59 PRO 99 A THR 100 n 60 THR 100 A ASN 101 n 61 ASN 101 A ASP 102 n 62 ASP 102 A TYR 103 n 63 TYR 103 A GLY 104 n 64 GLY 104 A ILE 105 n 65 ILE 105 A VAL 106 n 66 VAL 106 A ARG 107 n 67 ARG 107 A TYR 108 n 68 TYR 108 A THR 109 n 69 THR 109 A ASP 110 n 70 ASP 110 A GLY 111 n 71 GLY 111 A SER 112 n 72 SER 112 A SER 113 n 73 SER 113 A PRO 114 n 74 PRO 114 A ALA 115 n 75 ALA 115 A GLY 116 n 76 GLY 116 A THR 117 n 77 THR 117 A VAL 118 n 78 VAL 118 A ASP 119 n 79 ASP 119 A LEU 120 n 80 LEU 120 A TYR 120 n 81 A TYR 120 A ASN 120 n 82 B ASN 120 A GLY 120 n 83 C GLY 120 A SER 120 n 84 D SER 120 A THR 121 n 85 THR 121 A GLN 122 n 86 GLN 122 A ASP 123 n 87 ASP 123 A ILE 124 n 88 ILE 124 A SER 125 n 89 SER 125 A SER 126 n 90 SER 126 A ALA 127 n 91 ALA 127 A ALA 128 n 92 ALA 128 A ASN 129 n 93 ASN 129 A ALA 130 n 94 ALA 130 A VAL 131 n 95 VAL 131 A VAL 132 n 96 VAL 132 A GLY 133 n 97 GLY 133 A GLN 134 n 98 GLN 134 A ALA 135 n 99 ALA 135 A ILE 136 n 100 ILE 136 A LYS 137 n 101 LYS 137 A LYS 138 n 102 LYS 138 A SER 139 n 103 SER 139 A GLY 140 n 104 GLY 140 A SER 141 n 105 SER 141 A THR 142 n 106 THR 142 A THR 143 n 107 THR 143 A LYS 156 n 108 LYS 156 A VAL 157 n 109 VAL 157 A THR 158 n 110 THR 158 A SER 159 n 111 SER 159 A GLY 160 n 112 GLY 160 A THR 161 n 113 THR 161 A VAL 162 n 114 VAL 162 A THR 163 n 115 THR 163 A ALA 164 n 116 ALA 164 A VAL 165 n 117 VAL 165 A ASN 166 n 118 ASN 166 A VAL 167 n 119 VAL 167 A THR 168 n 120 THR 168 A VAL 169 n 121 VAL 169 A ASN 170 n 122 ASN 170 A TYR 171 n 123 TYR 171 A GLY 172 n 124 GLY 172 A ASP 173 n 125 ASP 173 A GLY 175 n 126 GLY 175 A PRO 176 n 127 PRO 176 A VAL 177 n 128 VAL 177 A TYR 178 n 129 TYR 178 A ASN 179 n 130 ASN 179 A MET 180 n 131 MET 180 A VAL 181 n 132 VAL 181 A ARG 182 n 133 ARG 182 A THR 183 n 134 THR 183 A THR 184 n 135 THR 184 A ALA 190 n 136 ALA 190 A CYS 191 n 137 CYS 191 A SER 192 n 138 SER 192 A ALA 192 n 139 A ALA 192 A GLY 192 n 140 B GLY 192 A GLY 193 n 141 GLY 193 A ASP 194 n 142 ASP 194 A SER 195 n 143 SER 195 A GLY 196 n 144 GLY 196 A GLY 197 n 145 GLY 197 A ALA 198 n 146 ALA 198 A HIS 199 n 147 HIS 199 A PHE 200 n 148 PHE 200 A ALA 201 n 149 ALA 201 A GLY 202 n 150 GLY 202 A SER 207 n 151 SER 207 A VAL 208 n 152 VAL 208 A ALA 209 n 153 ALA 209 A LEU 210 n 154 LEU 210 A GLY 211 n 155 GLY 211 A ILE 212 n 156 ILE 212 A HIS 213 n 157 HIS 213 A SER 214 n 158 SER 214 A GLY 215 n 159 GLY 215 A SER 216 n 160 SER 216 A SER 217 n 161 SER 217 A GLY 219 n 162 GLY 219 A CYS 220 n 163 CYS 220 A SER 221 n 164 SER 221 A GLY 221 n 165 A GLY 221 A THR 222 n 166 THR 222 A ALA 223 n 167 ALA 223 A GLY 224 n 168 GLY 224 A SER 225 n 169 SER 225 A ALA 226 n 170 ALA 226 A ILE 227 n 171 ILE 227 A HIS 228 n 172 HIS 228 A GLN 229 n 173 GLN 229 A PRO 230 n 174 PRO 230 A VAL 231 n 175 VAL 231 A THR 232 n 176 THR 232 A GLU 233 n 177 GLU 233 A ALA 234 n 178 ALA 234 A LEU 235 n 179 LEU 235 A SER 235 n 180 A SER 235 A ALA 236 n 181 ALA 236 A TYR 237 n 182 TYR 237 A GLY 238 n 183 GLY 238 A VAL 239 n 184 VAL 239 A THR 240 n 185 THR 240 A VAL 241 n 186 VAL 241 A TYR 242 n 187 TYR 242 A BOC 300 n 1 BOC 300 B ALA 301 n 2 ALA 301 B ALA 302 n 3 ALA 302 B PRO 303 n 4 PRO 303 B GLU 304 n 5 GLU 304 B author_and_software_defined_assembly PISA 2 dimeric 890 -3 7210 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 5.89 0.80 106.30 112.19 A A A CD1 CG CD2 TRP TRP TRP 66 66 66 N 1 -5.29 0.80 107.30 102.01 A A A CE2 CD2 CG TRP TRP TRP 66 66 66 N 1 3.08 0.50 120.30 123.38 A A A NE CZ NH1 ARG ARG ARG 88 88 88 N 1 3.65 0.50 120.30 123.95 A A A NE CZ NH1 ARG ARG ARG 107 107 107 N 1 -13.32 2.00 116.20 102.88 A A A CA C N SER SER GLY 195 195 196 Y 1 -10.72 1.60 129.70 118.98 A A A CB CG CD2 HIS HIS HIS 213 213 213 N 1 17.62 2.20 113.40 131.02 A A A CA CB CG GLU GLU GLU 233 233 233 N 1 -13.94 2.20 111.50 97.56 A A A N CA CB VAL VAL VAL 239 239 239 B N 1 A A NE2 CD2 HIS HIS 57 57 -0.068 0.011 1.373 1.305 N 1 A A NE2 CD2 HIS HIS 213 213 -0.075 0.011 1.373 1.298 N 1 A A NE2 CD2 HIS HIS 228 228 -0.067 0.011 1.373 1.306 N 1 A CYS 42 -125.74 -164.95 1 A ALA 45 -93.95 -67.35 1 A PRO 99 -73.25 -152.69 1 A THR 100 75.43 -57.09 B 1 A ASN 120 -146.24 20.90 1 A LYS 156 55.15 -129.82 1 A SER 225 -147.26 28.20 0.181 0.181 1.5 1 1.5 128 1445 0 0 1317 0.014 2.84 1.5 30.0 1HPG 22913 2.0 1 94.4 model building X-PLOR refinement X-PLOR phasing X-PLOR GLUTAMIC ACID-SPECIFIC PROTEASE (GLU-SGP) (E.C.3.4.21.82) COMPLEXED WITH A TETRAPEPTIDE LIGAND A glutamic acid specific serine protease utilizes a novel histidine triad in substrate binding 1 N N 2 N N 3 N N 3 N N A GLY 56 A GLY 32 HELX_P A THR 59 A THR 35 1 A 4 A VAL 231 A VAL 175 HELX_P A TYR 237 A TYR 182 1 B 8 disulf 2.032 A CYS 42 A SG CYS 14 1_555 A CYS 58 A SG CYS 34 1_555 disulf 2.016 A A CYS 191 A SG CYS 137 1_555 A CYS 220 A SG CYS 163 1_555 disulf 2.003 B A CYS 191 A SG CYS 137 1_555 A CYS 220 A SG CYS 163 1_555 covale 1.317 B BOC 300 B C BOC 1 1_555 B ALA 301 B N ALA 2 1_555 HYDROLASE/HYDROLASE INHIBITOR SERINE PROTEASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX A PHE 94 A PHE 58 1 A PRO 99 A PRO 59 -6.44 Q54211_STRGR UNP 1 169 Q54211 VLGGGAIYGGGSRCSAAFNVTKGGARYFVTAGHCTNISANWSASSGGSVVGVREGTSFPTNDYGIVRYTDGSSPAGTVDL YNGSTQDISSAANAVVGQAIKKSGSTTKVTSGTVTAVNVTVNYGDGPVYNMVRTTACSAGGDSGGAHFAGSVALGIHSGS SGCSGTAGSAIHQPVTEALSAYGVTVY 1HPG PDB 2 1 1HPG (BOC)AAPE 169 355 1HPG 16 242 Q54211 A 1 1 187 300 304 1HPG 300 304 1HPG B 2 1 5 6 2 6 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ALA 30 A ALA 6 A GLY 33 A GLY 9 A SER 40 A SER 12 A LYS 48 A LYS 22 B A ALA 49 A ALA 25 A THR 54 A THR 30 A TYR 103 A TYR 63 A TYR 108 A TYR 68 A VAL 84 A VAL 49 A SER 93 A SER 57 A ALA 65 A ALA 39 A SER 67 A SER 42 A GLY 116 A GLY 76 A LEU 120 A LEU 80 A SER 120 A SER 84 A ASP 123 A ASP 87 D A SER 125 A SER 89 A GLY 140 A GLY 104 A LYS 156 A LYS 108 A TYR 171 A TYR 123 A GLY 175 A GLY 126 A THR 183 A THR 134 A ILE 227 A ILE 171 A PRO 230 A PRO 174 A VAL 208 A VAL 152 A SER 216 A SER 160 A ALA 198 A ALA 146 A ALA 201 A ALA 149 BINDING SITE FOR CHAIN B OF TETRAPEPTIDE LIGAND Software 18 A HIS 57 A HIS 33 18 1_555 A ALA 164 A ALA 116 18 2_655 A VAL 167 A VAL 119 18 2_655 A TYR 171 A TYR 123 18 1_555 A ARG 182 A ARG 133 18 2_655 A SER 192 A SER 138 18 1_555 A ALA 192 A ALA 139 A 18 1_555 A GLY 192 A GLY 140 B 18 1_555 A GLY 193 A GLY 141 18 1_555 A ASP 194 A ASP 142 18 1_555 A SER 195 A SER 143 18 1_555 A HIS 213 A HIS 157 18 1_555 A SER 214 A SER 158 18 1_555 A GLY 215 A GLY 159 18 1_555 A SER 216 A SER 160 18 1_555 A SER 217 A SER 161 18 1_555 A HOH 469 C HOH 18 1_555 B HOH 427 D HOH 18 1_555 5 C 1 2 1