0.020056 0.000000 0.000000 0.000000 0.011738 0.000000 0.000000 0.000000 0.011418 0.00000 0.00000 0.00000 Wolan, D.W. Teyton, L. Rudolph, M.G. Villmow, B. Bauer, S. Busch, D.H. Wilson, I.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 49.860 85.190 87.580 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Nat.Immunol. 1529-2908 2 248 254 10.1038/85311 11224525 Crystal structure of the murine NK cell-activating receptor NKG2D at 1.95 A. 2001 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 93 1 CCD ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 1.0 BL9-2 SSRL SYNCHROTRON SSRL BEAMLINE BL9-2 14114.836 NKG2-D EXTRACELLULAR DOMAIN 1 man polymer 18.015 water 77 nat water no no GYCGPCPNNWICHRNNCYQFFNEEKTWNQSQASCLSQNSSLLKIYSKEEQDFLKLVKSYHWMGLVQIPANGSWQWEDGSS LSYNQLTLVEIPKGSCAVYGSSFKAYTEDCANLNTYICMKRAV GYCGPCPNNWICHRNNCYQFFNEEKTWNQSQASCLSQNSSLLKIYSKEEQDFLKLVKSYHWMGLVQIPANGSWQWEDGSS LSYNQLTLVEIPKGSCAVYGSSFKAYTEDCANLNTYICMKRAV A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus Escherichia sample 10090 Mus musculus 562 Escherichia coli 1 3.29 62.65 VAPOR DIFFUSION, SITTING DROP 6.5 NaCl, Na-Cit., PEG400, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K 295 repository Initial release Version format compliance Version format compliance 1 0 2001-03-07 1 1 2008-04-27 1 2 2011-07-13 RCSB Y RCSB 2000-12-14 REL REL HOH water HOH 1 2 HOH HOH 1 A HOH 2 2 HOH HOH 2 A HOH 3 2 HOH HOH 3 A HOH 4 2 HOH HOH 4 A HOH 5 2 HOH HOH 5 A HOH 6 2 HOH HOH 6 A HOH 7 2 HOH HOH 7 A HOH 8 2 HOH HOH 8 A HOH 9 2 HOH HOH 9 A HOH 10 2 HOH HOH 10 A HOH 11 2 HOH HOH 11 A HOH 12 2 HOH HOH 12 A HOH 13 2 HOH HOH 13 A HOH 14 2 HOH HOH 14 A HOH 15 2 HOH HOH 15 A HOH 16 2 HOH HOH 16 A HOH 17 2 HOH HOH 17 A HOH 18 2 HOH HOH 18 A HOH 19 2 HOH HOH 19 A HOH 20 2 HOH HOH 20 A HOH 21 2 HOH HOH 21 A HOH 22 2 HOH HOH 22 A HOH 23 2 HOH HOH 23 A HOH 24 2 HOH HOH 24 A HOH 25 2 HOH HOH 25 A HOH 26 2 HOH HOH 26 A HOH 27 2 HOH HOH 27 A HOH 28 2 HOH HOH 28 A HOH 29 2 HOH HOH 29 A HOH 30 2 HOH HOH 30 A HOH 31 2 HOH HOH 31 A HOH 32 2 HOH HOH 32 A HOH 33 2 HOH HOH 33 A HOH 34 2 HOH HOH 34 A HOH 35 2 HOH HOH 35 A HOH 36 2 HOH HOH 36 A HOH 37 2 HOH HOH 37 A HOH 38 2 HOH HOH 38 A HOH 39 2 HOH HOH 39 A HOH 40 2 HOH HOH 40 A HOH 41 2 HOH HOH 41 A HOH 42 2 HOH HOH 42 A HOH 43 2 HOH HOH 43 A HOH 44 2 HOH HOH 44 A HOH 45 2 HOH HOH 45 A HOH 46 2 HOH HOH 46 A HOH 47 2 HOH HOH 47 A HOH 48 2 HOH HOH 48 A HOH 49 2 HOH HOH 49 A HOH 50 2 HOH HOH 50 A HOH 51 2 HOH HOH 51 A HOH 52 2 HOH HOH 52 A HOH 53 2 HOH HOH 53 A HOH 54 2 HOH HOH 54 A HOH 55 2 HOH HOH 55 A HOH 56 2 HOH HOH 56 A HOH 57 2 HOH HOH 57 A HOH 58 2 HOH HOH 58 A HOH 59 2 HOH HOH 59 A HOH 60 2 HOH HOH 60 A HOH 61 2 HOH HOH 61 A HOH 62 2 HOH HOH 62 A HOH 63 2 HOH HOH 63 A HOH 64 2 HOH HOH 64 A HOH 65 2 HOH HOH 65 A HOH 66 2 HOH HOH 66 A HOH 67 2 HOH HOH 67 A HOH 68 2 HOH HOH 68 A HOH 69 2 HOH HOH 69 A HOH 70 2 HOH HOH 70 A HOH 71 2 HOH HOH 71 A HOH 72 2 HOH HOH 72 A HOH 73 2 HOH HOH 73 A HOH 74 2 HOH HOH 74 A HOH 75 2 HOH HOH 75 A HOH 76 2 HOH HOH 76 A HOH 77 2 HOH HOH 77 A GLY 110 n 1 GLY 110 A TYR 111 n 2 TYR 111 A CYS 112 n 3 CYS 112 A GLY 113 n 4 GLY 113 A CPR 114 n 5 PRO 114 A CYS 115 n 6 CYS 115 A PRO 116 n 7 PRO 116 A ASN 117 n 8 ASN 117 A ASN 118 n 9 ASN 118 A TRP 119 n 10 TRP 119 A ILE 120 n 11 ILE 120 A CYS 121 n 12 CYS 121 A HIS 122 n 13 HIS 122 A ARG 123 n 14 ARG 123 A ASN 124 n 15 ASN 124 A ASN 125 n 16 ASN 125 A CYS 126 n 17 CYS 126 A TYR 127 n 18 TYR 127 A GLN 128 n 19 GLN 128 A PHE 129 n 20 PHE 129 A PHE 130 n 21 PHE 130 A ASN 131 n 22 ASN 131 A GLU 132 n 23 GLU 132 A GLU 133 n 24 GLU 133 A LYS 134 n 25 LYS 134 A THR 135 n 26 THR 135 A TRP 136 n 27 TRP 136 A ASN 137 n 28 ASN 137 A GLN 138 n 29 GLN 138 A SER 139 n 30 SER 139 A GLN 140 n 31 GLN 140 A ALA 141 n 32 ALA 141 A SER 142 n 33 SER 142 A CYS 143 n 34 CYS 143 A LEU 144 n 35 LEU 144 A SER 145 n 36 SER 145 A GLN 146 n 37 GLN 146 A ASN 147 n 38 ASN 147 A SER 148 n 39 SER 148 A SER 149 n 40 SER 149 A LEU 150 n 41 LEU 150 A LEU 151 n 42 LEU 151 A LYS 152 n 43 LYS 152 A ILE 153 n 44 ILE 153 A TYR 154 n 45 TYR 154 A SER 155 n 46 SER 155 A LYS 156 n 47 LYS 156 A GLU 157 n 48 GLU 157 A GLU 158 n 49 GLU 158 A GLN 159 n 50 GLN 159 A ASP 160 n 51 ASP 160 A PHE 161 n 52 PHE 161 A LEU 162 n 53 LEU 162 A LYS 163 n 54 LYS 163 A LEU 164 n 55 LEU 164 A VAL 165 n 56 VAL 165 A LYS 166 n 57 LYS 166 A SER 167 n 58 SER 167 A TYR 168 n 59 TYR 168 A HIS 169 n 60 HIS 169 A TRP 170 n 61 TRP 170 A MET 171 n 62 MET 171 A GLY 172 n 63 GLY 172 A LEU 173 n 64 LEU 173 A VAL 174 n 65 VAL 174 A GLN 175 n 66 GLN 175 A ALA 176 n 67 ILE 176 A PRO 177 n 68 PRO 177 A ALA 178 n 69 ALA 178 A ASN 179 n 70 ASN 179 A GLY 180 n 71 GLY 180 A SER 181 n 72 SER 181 A TRP 182 n 73 TRP 182 A GLN 183 n 74 GLN 183 A TRP 184 n 75 TRP 184 A GLU 185 n 76 GLU 185 A ASP 186 n 77 ASP 186 A GLY 187 n 78 GLY 187 A SER 188 n 79 SER 188 A SER 189 n 80 SER 189 A LEU 190 n 81 LEU 190 A SER 191 n 82 SER 191 A TYR 192 n 83 TYR 192 A ASN 193 n 84 ASN 193 A GLN 194 n 85 GLN 194 A LEU 195 n 86 LEU 195 A THR 196 n 87 THR 196 A LEU 197 n 88 LEU 197 A VAL 198 n 89 VAL 198 A GLU 199 n 90 GLU 199 A ILE 200 n 91 ILE 200 A PRO 201 n 92 PRO 201 A LYS 202 n 93 LYS 202 A GLY 203 n 94 GLY 203 A SER 204 n 95 SER 204 A CYS 205 n 96 CYS 205 A ALA 206 n 97 ALA 206 A VAL 207 n 98 VAL 207 A TYR 208 n 99 TYR 208 A GLY 209 n 100 GLY 209 A SER 210 n 101 SER 210 A SER 211 n 102 SER 211 A PHE 212 n 103 PHE 212 A LYS 213 n 104 LYS 213 A ALA 214 n 105 ALA 214 A TYR 215 n 106 TYR 215 A THR 216 n 107 THR 216 A GLU 217 n 108 GLU 217 A ASP 218 n 109 ASP 218 A CYS 219 n 110 CYS 219 A ALA 220 n 111 ALA 220 A ASN 221 n 112 ASN 221 A LEU 222 n 113 LEU 222 A ASN 223 n 114 ASN 223 A THR 224 n 115 THR 224 A TYR 225 n 116 TYR 225 A ILE 226 n 117 ILE 226 A CYS 227 n 118 CYS 227 A MET 228 n 119 MET 228 A LYS 229 n 120 LYS 229 A ARG 230 n 121 ARG 230 A ALA 231 n 122 ALA 231 A VAL 232 n 123 VAL 232 A author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 6_555 -x,-y+1/2,z crystal symmetry operation 0.0000000000 42.5950000000 0.0000000000 A O HIS 122 A O HIS 13 A N ASN 125 A N ASN 16 A N LYS 134 A N LYS 25 A O ASN 223 A O ASN 114 A N MET 228 A N MET 119 A O SER 149 A O SER 40 A O SER 149 A O SER 40 A N MET 228 A N MET 119 A O THR 224 A O THR 115 A N TRP 170 A N TRP 61 A O VAL 174 A O VAL 65 A N GLN 183 A N GLN 74 A O GLN 183 A O GLN 74 A N VAL 174 A N VAL 65 A N MET 171 A N MET 62 A O ALA 206 A O ALA 97 A N VAL 207 A N VAL 98 A O TYR 215 A O TYR 106 A N ALA 214 A N ALA 105 A O THR 196 A O THR 87 1 A CG1 ILE 176 A CG1 ILE 67 1 Y 1 A CG2 ILE 176 A CG2 ILE 67 1 Y 1 A CD1 ILE 176 A CD1 ILE 67 1 Y 1 A A O O HOH HOH 53 69 2.14 1 A A O O HOH HOH 39 50 2.15 1 9.18 1.50 119.30 128.48 A A A C N CA ILE PRO PRO 200 201 201 Y 1 A SER 155 -164.08 114.84 1 A SER 167 67.66 -161.99 1 A ALA 178 -71.61 -93.73 1 A PRO 201 -25.64 128.99 1 A LYS 202 83.09 -37.05 1 A SER 210 74.16 169.63 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM WATER.TOP 31.2 0.08 0.00 0.00 -6.16 0.00 6.07 0.227 0.006 0.215 0.215 1.95 27.62 1340 13099 10.2 93.7 RANDOM 6848118.87 0.00 1 RESTRAINED THROUGHOUT 0 0 MOLECULAR REPLACEMENT Engh & Huber FLAT MODEL 43.44 0.380 0.26 0.25 5.00 0.31 0.26 1.95 27.62 77 1063 0 0 986 0.007 1.4 24.5 0.74 1.47 1.50 2.13 2.00 1.84 2.00 2.65 2.50 0.326 0.024 0.293 2.07 188 1762 6 9.6 85 21.4 1.95 30 1HQ8 13874 0.084 1 17.9 3.9 98.7 0.775 1.95 2.02 2.4 1361 3.4 97.7 data reduction DENZO data scaling SCALEPACK phasing AMoRE refinement CNS 1.0 NKG2-D CRYSTAL STRUCTURE OF THE MURINE NK CELL-ACTIVATING RECEPTOR NKG2D AT 1.95 A 1 N N 2 N N The second part of the biological assembly is generated by the two fold axis: -x, 1/2-y, z A THR 135 A THR 26 HELX_P A SER 145 A SER 36 1 1 11 A GLN 159 A GLN 50 HELX_P A VAL 165 A VAL 56 5 2 7 disulf 2.022 A CYS 112 A SG CYS 3 1_555 A CYS 121 A SG CYS 12 1_555 disulf 2.028 A CYS 115 A SG CYS 6 1_555 A CYS 126 A SG CYS 17 1_555 disulf 2.030 A CYS 143 A SG CYS 34 1_555 A CYS 227 A SG CYS 118 1_555 disulf 2.033 A CYS 205 A SG CYS 96 1_555 A CYS 219 A SG CYS 110 1_555 APOPTOSIS homodimer, cis-proline, APOPTOSIS A GLY 113 A GLY 4 1 A PRO 114 A PRO 5 -0.33 NKG2D_MOUSE UNP 1 110 O54709 GYCGPCPNNWICHRNNCYQFFNEEKTWNQSQASCLSQNSSLLKIYSKEEQDFLKLVKSYHWMGLVQIPANGSWQWEDGSS LSYNQLTLVEIPKGSCAVYGSSFKAYTEDCANLNTYICMKRAV 110 232 1HQ8 110 232 O54709 A 1 1 123 11 anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel A ILE 120 A ILE 11 A HIS 122 A HIS 13 A ASN 125 A ASN 16 A LYS 134 A LYS 25 A ASN 223 A ASN 114 A LYS 229 A LYS 120 A SER 149 A SER 40 A LEU 150 A LEU 41 A ASN 223 A ASN 114 A LYS 229 A LYS 120 A HIS 169 A HIS 60 A GLN 175 A GLN 66 A TRP 182 A TRP 73 A TRP 184 A TRP 75 A HIS 169 A HIS 60 A GLN 175 A GLN 66 A CYS 205 A CYS 96 A TYR 208 A TYR 99 A LYS 213 A LYS 104 A GLU 217 A GLU 108 A THR 196 A THR 87 A VAL 198 A VAL 89 24 I 21 21 21