0.020056
0.000000
0.000000
0.000000
0.011738
0.000000
0.000000
0.000000
0.011418
0.00000
0.00000
0.00000
Wolan, D.W.
Teyton, L.
Rudolph, M.G.
Villmow, B.
Bauer, S.
Busch, D.H.
Wilson, I.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
49.860
85.190
87.580
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Nat.Immunol.
1529-2908
2
248
254
10.1038/85311
11224525
Crystal structure of the murine NK cell-activating receptor NKG2D at 1.95 A.
2001
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
93
1
CCD
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
1.0
BL9-2
SSRL
SYNCHROTRON
SSRL BEAMLINE BL9-2
14114.836
NKG2-D
EXTRACELLULAR DOMAIN
1
man
polymer
18.015
water
77
nat
water
no
no
GYCGPCPNNWICHRNNCYQFFNEEKTWNQSQASCLSQNSSLLKIYSKEEQDFLKLVKSYHWMGLVQIPANGSWQWEDGSS
LSYNQLTLVEIPKGSCAVYGSSFKAYTEDCANLNTYICMKRAV
GYCGPCPNNWICHRNNCYQFFNEEKTWNQSQASCLSQNSSLLKIYSKEEQDFLKLVKSYHWMGLVQIPANGSWQWEDGSS
LSYNQLTLVEIPKGSCAVYGSSFKAYTEDCANLNTYICMKRAV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Escherichia
sample
10090
Mus musculus
562
Escherichia coli
1
3.29
62.65
VAPOR DIFFUSION, SITTING DROP
6.5
NaCl, Na-Cit., PEG400, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K
295
repository
Initial release
Version format compliance
Version format compliance
1
0
2001-03-07
1
1
2008-04-27
1
2
2011-07-13
RCSB
Y
RCSB
2000-12-14
REL
REL
HOH
water
HOH
1
2
HOH
HOH
1
A
HOH
2
2
HOH
HOH
2
A
HOH
3
2
HOH
HOH
3
A
HOH
4
2
HOH
HOH
4
A
HOH
5
2
HOH
HOH
5
A
HOH
6
2
HOH
HOH
6
A
HOH
7
2
HOH
HOH
7
A
HOH
8
2
HOH
HOH
8
A
HOH
9
2
HOH
HOH
9
A
HOH
10
2
HOH
HOH
10
A
HOH
11
2
HOH
HOH
11
A
HOH
12
2
HOH
HOH
12
A
HOH
13
2
HOH
HOH
13
A
HOH
14
2
HOH
HOH
14
A
HOH
15
2
HOH
HOH
15
A
HOH
16
2
HOH
HOH
16
A
HOH
17
2
HOH
HOH
17
A
HOH
18
2
HOH
HOH
18
A
HOH
19
2
HOH
HOH
19
A
HOH
20
2
HOH
HOH
20
A
HOH
21
2
HOH
HOH
21
A
HOH
22
2
HOH
HOH
22
A
HOH
23
2
HOH
HOH
23
A
HOH
24
2
HOH
HOH
24
A
HOH
25
2
HOH
HOH
25
A
HOH
26
2
HOH
HOH
26
A
HOH
27
2
HOH
HOH
27
A
HOH
28
2
HOH
HOH
28
A
HOH
29
2
HOH
HOH
29
A
HOH
30
2
HOH
HOH
30
A
HOH
31
2
HOH
HOH
31
A
HOH
32
2
HOH
HOH
32
A
HOH
33
2
HOH
HOH
33
A
HOH
34
2
HOH
HOH
34
A
HOH
35
2
HOH
HOH
35
A
HOH
36
2
HOH
HOH
36
A
HOH
37
2
HOH
HOH
37
A
HOH
38
2
HOH
HOH
38
A
HOH
39
2
HOH
HOH
39
A
HOH
40
2
HOH
HOH
40
A
HOH
41
2
HOH
HOH
41
A
HOH
42
2
HOH
HOH
42
A
HOH
43
2
HOH
HOH
43
A
HOH
44
2
HOH
HOH
44
A
HOH
45
2
HOH
HOH
45
A
HOH
46
2
HOH
HOH
46
A
HOH
47
2
HOH
HOH
47
A
HOH
48
2
HOH
HOH
48
A
HOH
49
2
HOH
HOH
49
A
HOH
50
2
HOH
HOH
50
A
HOH
51
2
HOH
HOH
51
A
HOH
52
2
HOH
HOH
52
A
HOH
53
2
HOH
HOH
53
A
HOH
54
2
HOH
HOH
54
A
HOH
55
2
HOH
HOH
55
A
HOH
56
2
HOH
HOH
56
A
HOH
57
2
HOH
HOH
57
A
HOH
58
2
HOH
HOH
58
A
HOH
59
2
HOH
HOH
59
A
HOH
60
2
HOH
HOH
60
A
HOH
61
2
HOH
HOH
61
A
HOH
62
2
HOH
HOH
62
A
HOH
63
2
HOH
HOH
63
A
HOH
64
2
HOH
HOH
64
A
HOH
65
2
HOH
HOH
65
A
HOH
66
2
HOH
HOH
66
A
HOH
67
2
HOH
HOH
67
A
HOH
68
2
HOH
HOH
68
A
HOH
69
2
HOH
HOH
69
A
HOH
70
2
HOH
HOH
70
A
HOH
71
2
HOH
HOH
71
A
HOH
72
2
HOH
HOH
72
A
HOH
73
2
HOH
HOH
73
A
HOH
74
2
HOH
HOH
74
A
HOH
75
2
HOH
HOH
75
A
HOH
76
2
HOH
HOH
76
A
HOH
77
2
HOH
HOH
77
A
GLY
110
n
1
GLY
110
A
TYR
111
n
2
TYR
111
A
CYS
112
n
3
CYS
112
A
GLY
113
n
4
GLY
113
A
CPR
114
n
5
PRO
114
A
CYS
115
n
6
CYS
115
A
PRO
116
n
7
PRO
116
A
ASN
117
n
8
ASN
117
A
ASN
118
n
9
ASN
118
A
TRP
119
n
10
TRP
119
A
ILE
120
n
11
ILE
120
A
CYS
121
n
12
CYS
121
A
HIS
122
n
13
HIS
122
A
ARG
123
n
14
ARG
123
A
ASN
124
n
15
ASN
124
A
ASN
125
n
16
ASN
125
A
CYS
126
n
17
CYS
126
A
TYR
127
n
18
TYR
127
A
GLN
128
n
19
GLN
128
A
PHE
129
n
20
PHE
129
A
PHE
130
n
21
PHE
130
A
ASN
131
n
22
ASN
131
A
GLU
132
n
23
GLU
132
A
GLU
133
n
24
GLU
133
A
LYS
134
n
25
LYS
134
A
THR
135
n
26
THR
135
A
TRP
136
n
27
TRP
136
A
ASN
137
n
28
ASN
137
A
GLN
138
n
29
GLN
138
A
SER
139
n
30
SER
139
A
GLN
140
n
31
GLN
140
A
ALA
141
n
32
ALA
141
A
SER
142
n
33
SER
142
A
CYS
143
n
34
CYS
143
A
LEU
144
n
35
LEU
144
A
SER
145
n
36
SER
145
A
GLN
146
n
37
GLN
146
A
ASN
147
n
38
ASN
147
A
SER
148
n
39
SER
148
A
SER
149
n
40
SER
149
A
LEU
150
n
41
LEU
150
A
LEU
151
n
42
LEU
151
A
LYS
152
n
43
LYS
152
A
ILE
153
n
44
ILE
153
A
TYR
154
n
45
TYR
154
A
SER
155
n
46
SER
155
A
LYS
156
n
47
LYS
156
A
GLU
157
n
48
GLU
157
A
GLU
158
n
49
GLU
158
A
GLN
159
n
50
GLN
159
A
ASP
160
n
51
ASP
160
A
PHE
161
n
52
PHE
161
A
LEU
162
n
53
LEU
162
A
LYS
163
n
54
LYS
163
A
LEU
164
n
55
LEU
164
A
VAL
165
n
56
VAL
165
A
LYS
166
n
57
LYS
166
A
SER
167
n
58
SER
167
A
TYR
168
n
59
TYR
168
A
HIS
169
n
60
HIS
169
A
TRP
170
n
61
TRP
170
A
MET
171
n
62
MET
171
A
GLY
172
n
63
GLY
172
A
LEU
173
n
64
LEU
173
A
VAL
174
n
65
VAL
174
A
GLN
175
n
66
GLN
175
A
ALA
176
n
67
ILE
176
A
PRO
177
n
68
PRO
177
A
ALA
178
n
69
ALA
178
A
ASN
179
n
70
ASN
179
A
GLY
180
n
71
GLY
180
A
SER
181
n
72
SER
181
A
TRP
182
n
73
TRP
182
A
GLN
183
n
74
GLN
183
A
TRP
184
n
75
TRP
184
A
GLU
185
n
76
GLU
185
A
ASP
186
n
77
ASP
186
A
GLY
187
n
78
GLY
187
A
SER
188
n
79
SER
188
A
SER
189
n
80
SER
189
A
LEU
190
n
81
LEU
190
A
SER
191
n
82
SER
191
A
TYR
192
n
83
TYR
192
A
ASN
193
n
84
ASN
193
A
GLN
194
n
85
GLN
194
A
LEU
195
n
86
LEU
195
A
THR
196
n
87
THR
196
A
LEU
197
n
88
LEU
197
A
VAL
198
n
89
VAL
198
A
GLU
199
n
90
GLU
199
A
ILE
200
n
91
ILE
200
A
PRO
201
n
92
PRO
201
A
LYS
202
n
93
LYS
202
A
GLY
203
n
94
GLY
203
A
SER
204
n
95
SER
204
A
CYS
205
n
96
CYS
205
A
ALA
206
n
97
ALA
206
A
VAL
207
n
98
VAL
207
A
TYR
208
n
99
TYR
208
A
GLY
209
n
100
GLY
209
A
SER
210
n
101
SER
210
A
SER
211
n
102
SER
211
A
PHE
212
n
103
PHE
212
A
LYS
213
n
104
LYS
213
A
ALA
214
n
105
ALA
214
A
TYR
215
n
106
TYR
215
A
THR
216
n
107
THR
216
A
GLU
217
n
108
GLU
217
A
ASP
218
n
109
ASP
218
A
CYS
219
n
110
CYS
219
A
ALA
220
n
111
ALA
220
A
ASN
221
n
112
ASN
221
A
LEU
222
n
113
LEU
222
A
ASN
223
n
114
ASN
223
A
THR
224
n
115
THR
224
A
TYR
225
n
116
TYR
225
A
ILE
226
n
117
ILE
226
A
CYS
227
n
118
CYS
227
A
MET
228
n
119
MET
228
A
LYS
229
n
120
LYS
229
A
ARG
230
n
121
ARG
230
A
ALA
231
n
122
ALA
231
A
VAL
232
n
123
VAL
232
A
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
6_555
-x,-y+1/2,z
crystal symmetry operation
0.0000000000
42.5950000000
0.0000000000
A
O
HIS
122
A
O
HIS
13
A
N
ASN
125
A
N
ASN
16
A
N
LYS
134
A
N
LYS
25
A
O
ASN
223
A
O
ASN
114
A
N
MET
228
A
N
MET
119
A
O
SER
149
A
O
SER
40
A
O
SER
149
A
O
SER
40
A
N
MET
228
A
N
MET
119
A
O
THR
224
A
O
THR
115
A
N
TRP
170
A
N
TRP
61
A
O
VAL
174
A
O
VAL
65
A
N
GLN
183
A
N
GLN
74
A
O
GLN
183
A
O
GLN
74
A
N
VAL
174
A
N
VAL
65
A
N
MET
171
A
N
MET
62
A
O
ALA
206
A
O
ALA
97
A
N
VAL
207
A
N
VAL
98
A
O
TYR
215
A
O
TYR
106
A
N
ALA
214
A
N
ALA
105
A
O
THR
196
A
O
THR
87
1
A
CG1
ILE
176
A
CG1
ILE
67
1
Y
1
A
CG2
ILE
176
A
CG2
ILE
67
1
Y
1
A
CD1
ILE
176
A
CD1
ILE
67
1
Y
1
A
A
O
O
HOH
HOH
53
69
2.14
1
A
A
O
O
HOH
HOH
39
50
2.15
1
9.18
1.50
119.30
128.48
A
A
A
C
N
CA
ILE
PRO
PRO
200
201
201
Y
1
A
SER
155
-164.08
114.84
1
A
SER
167
67.66
-161.99
1
A
ALA
178
-71.61
-93.73
1
A
PRO
201
-25.64
128.99
1
A
LYS
202
83.09
-37.05
1
A
SER
210
74.16
169.63
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
31.2
0.08
0.00
0.00
-6.16
0.00
6.07
0.227
0.006
0.215
0.215
1.95
27.62
1340
13099
10.2
93.7
RANDOM
6848118.87
0.00
1
RESTRAINED
THROUGHOUT
0
0
MOLECULAR REPLACEMENT
Engh & Huber
FLAT MODEL
43.44
0.380
0.26
0.25
5.00
0.31
0.26
1.95
27.62
77
1063
0
0
986
0.007
1.4
24.5
0.74
1.47
1.50
2.13
2.00
1.84
2.00
2.65
2.50
0.326
0.024
0.293
2.07
188
1762
6
9.6
85
21.4
1.95
30
1HQ8
13874
0.084
1
17.9
3.9
98.7
0.775
1.95
2.02
2.4
1361
3.4
97.7
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
CNS
1.0
NKG2-D
CRYSTAL STRUCTURE OF THE MURINE NK CELL-ACTIVATING RECEPTOR NKG2D AT 1.95 A
1
N
N
2
N
N
The second part of the biological assembly is generated
by the two fold axis: -x, 1/2-y, z
A
THR
135
A
THR
26
HELX_P
A
SER
145
A
SER
36
1
1
11
A
GLN
159
A
GLN
50
HELX_P
A
VAL
165
A
VAL
56
5
2
7
disulf
2.022
A
CYS
112
A
SG
CYS
3
1_555
A
CYS
121
A
SG
CYS
12
1_555
disulf
2.028
A
CYS
115
A
SG
CYS
6
1_555
A
CYS
126
A
SG
CYS
17
1_555
disulf
2.030
A
CYS
143
A
SG
CYS
34
1_555
A
CYS
227
A
SG
CYS
118
1_555
disulf
2.033
A
CYS
205
A
SG
CYS
96
1_555
A
CYS
219
A
SG
CYS
110
1_555
APOPTOSIS
homodimer, cis-proline, APOPTOSIS
A
GLY
113
A
GLY
4
1
A
PRO
114
A
PRO
5
-0.33
NKG2D_MOUSE
UNP
1
110
O54709
GYCGPCPNNWICHRNNCYQFFNEEKTWNQSQASCLSQNSSLLKIYSKEEQDFLKLVKSYHWMGLVQIPANGSWQWEDGSS
LSYNQLTLVEIPKGSCAVYGSSFKAYTEDCANLNTYICMKRAV
110
232
1HQ8
110
232
O54709
A
1
1
123
11
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
ILE
120
A
ILE
11
A
HIS
122
A
HIS
13
A
ASN
125
A
ASN
16
A
LYS
134
A
LYS
25
A
ASN
223
A
ASN
114
A
LYS
229
A
LYS
120
A
SER
149
A
SER
40
A
LEU
150
A
LEU
41
A
ASN
223
A
ASN
114
A
LYS
229
A
LYS
120
A
HIS
169
A
HIS
60
A
GLN
175
A
GLN
66
A
TRP
182
A
TRP
73
A
TRP
184
A
TRP
75
A
HIS
169
A
HIS
60
A
GLN
175
A
GLN
66
A
CYS
205
A
CYS
96
A
TYR
208
A
TYR
99
A
LYS
213
A
LYS
104
A
GLU
217
A
GLU
108
A
THR
196
A
THR
87
A
VAL
198
A
VAL
89
24
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