1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Friedrich, C.L. Rozek, A. Patrzykat, A. Hancock, R.E.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking H2 N 16.023 AMINO GROUP non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 276 24015 24022 10.1074/jbc.M009691200 11294848 Structure and mechanism of action of an indolicidin peptide derivative with improved activity against Gram-positive bacteria 2001 US Biochemistry BICHAW 0033 0006-2960 39 15765 15774 10.1021/bi000714m Structure of the bovine antimicrobial peptide indolicidin bound to dodecylphosphocholine and sodium dodecyl sulfate micelles. 2000 10.2210/pdb1hr1/pdb pdb_00001hr1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1830.188 INDOLICIDIN P3A,P7A,P10A 1 syn polymer no yes ILAWKWAWWAWRR(NH2) ILAWKWAWWAWRRX A polypeptide(L) n n n n n n n n n n n n n n database_2 pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Database references Derived calculations 1 0 2001-01-03 1 1 2008-04-27 1 2 2011-07-13 1 3 2021-11-10 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id 1G89 contains indolicidin in DPC micelles 1G8C contains indolicidin in SDS micelles RCSB Y PDBJ 2000-12-20 REL REL THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE OCCURS NATURALLY IN BOS TAURUS. THE SEQUENCE IS NATURALLY AMIDATED AT C-TERMINUS. 9913 cattle BOS TAURUS sample This structure was determined using standard 2D homonuclear techniques. structures with the least restraint violations,structures with the lowest energy 20 15 2D NOESY 200mM DPC 4.0 ambient 310 K The structures are based on 167 (non-redundant) NOE-derived distance restraints, 77 intraresidue and 90 inter-residue restraints. Structures were generated using DGII (MSI) and then refined using XPLOR. distance geometry and simulated annealing 1 closest to the average 2mM CP10A; 200mM dodecylphosphocholine 10 mM phosphate buffer; 90%H2O,10%D2O Dealglio processing NMRPipe Johnson data analysis NMRView 4.0.3. MSI structure solution DGII 97.2 Brunger refinement X-PLOR 3.851 600 Bruker AMX ILE 1 n 1 ILE 1 A LEU 2 n 2 LEU 2 A ALA 3 n 3 ALA 3 A TRP 4 n 4 TRP 4 A LYS 5 n 5 LYS 5 A TRP 6 n 6 TRP 6 A ALA 7 n 7 ALA 7 A TRP 8 n 8 TRP 8 A TRP 9 n 9 TRP 9 A ALA 10 n 10 ALA 10 A TRP 11 n 11 TRP 11 A ARG 12 n 12 ARG 12 A ARG 13 n 13 ARG 13 A NH2 14 n 14 NH2 14 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 5 A A O HN1 TRP NH2 11 14 1.51 8 A A O H TRP TRP 8 11 1.59 11 A A O H TRP TRP 8 11 1.60 1 A ARG 12 0.237 SIDE CHAIN 1 A ARG 13 0.315 SIDE CHAIN 2 A ARG 12 0.183 SIDE CHAIN 2 A ARG 13 0.265 SIDE CHAIN 3 A ARG 12 0.315 SIDE CHAIN 3 A ARG 13 0.308 SIDE CHAIN 4 A ARG 12 0.197 SIDE CHAIN 4 A ARG 13 0.281 SIDE CHAIN 5 A ARG 12 0.218 SIDE CHAIN 5 A ARG 13 0.301 SIDE CHAIN 6 A ARG 12 0.188 SIDE CHAIN 6 A ARG 13 0.292 SIDE CHAIN 7 A ARG 12 0.239 SIDE CHAIN 7 A ARG 13 0.318 SIDE CHAIN 8 A ARG 12 0.237 SIDE CHAIN 8 A ARG 13 0.245 SIDE CHAIN 9 A ARG 12 0.206 SIDE CHAIN 9 A ARG 13 0.270 SIDE CHAIN 10 A ARG 12 0.252 SIDE CHAIN 10 A ARG 13 0.292 SIDE CHAIN 11 A ARG 12 0.276 SIDE CHAIN 11 A ARG 13 0.296 SIDE CHAIN 12 A ARG 12 0.293 SIDE CHAIN 12 A ARG 13 0.295 SIDE CHAIN 13 A ARG 12 0.310 SIDE CHAIN 13 A ARG 13 0.258 SIDE CHAIN 14 A ARG 12 0.265 SIDE CHAIN 14 A ARG 13 0.236 SIDE CHAIN 15 A ARG 12 0.317 SIDE CHAIN 15 A ARG 13 0.235 SIDE CHAIN 1 A ALA 3 167.55 140.69 1 A TRP 4 171.33 -60.28 1 A TRP 8 -51.02 -84.47 2 A ALA 3 168.12 137.32 2 A TRP 4 75.36 -51.13 2 A TRP 8 -60.42 -86.19 3 A ALA 3 168.16 141.81 3 A TRP 4 172.56 -60.64 3 A TRP 8 -49.42 -83.06 3 A ARG 12 -37.46 -38.10 4 A ALA 3 168.27 140.18 4 A TRP 4 169.75 -59.52 4 A TRP 8 -50.02 -84.85 4 A ARG 12 -37.95 -36.64 5 A ALA 3 167.88 141.75 5 A TRP 4 171.51 -60.58 5 A TRP 8 -59.01 -85.69 6 A ALA 3 72.95 138.81 6 A TRP 4 176.97 -61.08 6 A TRP 8 -43.42 -82.63 7 A ALA 3 -92.25 37.17 7 A TRP 8 -52.87 -83.21 8 A ALA 3 169.92 139.51 8 A TRP 4 171.77 -59.92 8 A TRP 8 -61.16 -84.64 9 A LEU 2 -115.91 78.17 9 A TRP 8 -55.09 -84.47 10 A ALA 3 167.87 140.88 10 A TRP 4 171.50 -60.41 10 A TRP 8 -44.21 -83.02 10 A ARG 12 -37.45 -38.77 11 A ALA 3 175.86 128.30 11 A TRP 4 74.26 -52.87 11 A TRP 8 -65.12 -86.36 12 A ALA 3 172.23 126.52 12 A TRP 4 74.28 -51.78 12 A TRP 8 -60.19 -84.71 13 A ALA 3 167.76 141.47 13 A TRP 4 170.37 -59.78 13 A TRP 8 -68.10 -84.93 14 A ALA 3 64.08 124.14 14 A TRP 4 73.89 -52.52 14 A TRP 8 -53.89 -82.44 15 A ALA 3 168.89 140.05 15 A TRP 4 170.07 -59.34 15 A TRP 8 -51.98 -81.65 Structure of an indolicidin peptide derivative with P-->A substitution 1 N N A TRP 4 A TRP 4 HELX_P A ARG 13 A ARG 13 1 1 10 covale 1.306 both A ARG 13 A C ARG 13 1_555 A NH2 14 A N NH2 14 1_555 ANTIBIOTIC, ANTIMICROBIAL PROTEIN alpha-helix, cationic antimicrobial peptide, ANTIBIOTIC, ANTIMICROBIAL PROTEIN INDC_BOVIN UNP 1 131 P33046 ILPWKWPWWPWRR 131 143 1HR1 1 13 P33046 A 1 1 13 1 PRO engineered mutation ALA 3 1HR1 A P33046 UNP 133 3 1 PRO engineered mutation ALA 7 1HR1 A P33046 UNP 137 7 1 PRO engineered mutation ALA 10 1HR1 A P33046 UNP 140 10 BINDING SITE FOR RESIDUE NH2 A 14 A NH2 14 Software 2 A TRP 11 A TRP 11 2 1_555 A ARG 13 A ARG 13 2 1_555 1 P 1