1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Friedrich, C.L.
Rozek, A.
Patrzykat, A.
Hancock, R.E.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
H2 N
16.023
AMINO GROUP
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
276
24015
24022
10.1074/jbc.M009691200
11294848
Structure and mechanism of action of an indolicidin peptide derivative with improved activity against Gram-positive bacteria
2001
US
Biochemistry
BICHAW
0033
0006-2960
39
15765
15774
10.1021/bi000714m
Structure of the bovine antimicrobial peptide indolicidin bound to dodecylphosphocholine and sodium dodecyl sulfate micelles.
2000
10.2210/pdb1hr1/pdb
pdb_00001hr1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1830.188
INDOLICIDIN
P3A,P7A,P10A
1
syn
polymer
no
yes
ILAWKWAWWAWRR(NH2)
ILAWKWAWWAWRRX
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
2001-01-03
1
1
2008-04-27
1
2
2011-07-13
1
3
2021-11-10
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1G89 contains indolicidin in DPC micelles
1G8C contains indolicidin in SDS micelles
RCSB
Y
PDBJ
2000-12-20
REL
REL
THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE OCCURS NATURALLY IN BOS TAURUS. THE SEQUENCE IS NATURALLY AMIDATED AT C-TERMINUS.
9913
cattle
BOS TAURUS
sample
This structure was determined using standard 2D homonuclear techniques.
structures with the least restraint violations,structures with the lowest energy
20
15
2D NOESY
200mM DPC
4.0
ambient
310
K
The structures are based on 167 (non-redundant) NOE-derived distance restraints, 77 intraresidue and 90 inter-residue restraints. Structures were generated using DGII (MSI) and then refined using XPLOR.
distance geometry and simulated annealing
1
closest to the average
2mM CP10A; 200mM dodecylphosphocholine
10 mM phosphate buffer; 90%H2O,10%D2O
Dealglio
processing
NMRPipe
Johnson
data analysis
NMRView
4.0.3.
MSI
structure solution
DGII
97.2
Brunger
refinement
X-PLOR
3.851
600
Bruker
AMX
ILE
1
n
1
ILE
1
A
LEU
2
n
2
LEU
2
A
ALA
3
n
3
ALA
3
A
TRP
4
n
4
TRP
4
A
LYS
5
n
5
LYS
5
A
TRP
6
n
6
TRP
6
A
ALA
7
n
7
ALA
7
A
TRP
8
n
8
TRP
8
A
TRP
9
n
9
TRP
9
A
ALA
10
n
10
ALA
10
A
TRP
11
n
11
TRP
11
A
ARG
12
n
12
ARG
12
A
ARG
13
n
13
ARG
13
A
NH2
14
n
14
NH2
14
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
5
A
A
O
HN1
TRP
NH2
11
14
1.51
8
A
A
O
H
TRP
TRP
8
11
1.59
11
A
A
O
H
TRP
TRP
8
11
1.60
1
A
ARG
12
0.237
SIDE CHAIN
1
A
ARG
13
0.315
SIDE CHAIN
2
A
ARG
12
0.183
SIDE CHAIN
2
A
ARG
13
0.265
SIDE CHAIN
3
A
ARG
12
0.315
SIDE CHAIN
3
A
ARG
13
0.308
SIDE CHAIN
4
A
ARG
12
0.197
SIDE CHAIN
4
A
ARG
13
0.281
SIDE CHAIN
5
A
ARG
12
0.218
SIDE CHAIN
5
A
ARG
13
0.301
SIDE CHAIN
6
A
ARG
12
0.188
SIDE CHAIN
6
A
ARG
13
0.292
SIDE CHAIN
7
A
ARG
12
0.239
SIDE CHAIN
7
A
ARG
13
0.318
SIDE CHAIN
8
A
ARG
12
0.237
SIDE CHAIN
8
A
ARG
13
0.245
SIDE CHAIN
9
A
ARG
12
0.206
SIDE CHAIN
9
A
ARG
13
0.270
SIDE CHAIN
10
A
ARG
12
0.252
SIDE CHAIN
10
A
ARG
13
0.292
SIDE CHAIN
11
A
ARG
12
0.276
SIDE CHAIN
11
A
ARG
13
0.296
SIDE CHAIN
12
A
ARG
12
0.293
SIDE CHAIN
12
A
ARG
13
0.295
SIDE CHAIN
13
A
ARG
12
0.310
SIDE CHAIN
13
A
ARG
13
0.258
SIDE CHAIN
14
A
ARG
12
0.265
SIDE CHAIN
14
A
ARG
13
0.236
SIDE CHAIN
15
A
ARG
12
0.317
SIDE CHAIN
15
A
ARG
13
0.235
SIDE CHAIN
1
A
ALA
3
167.55
140.69
1
A
TRP
4
171.33
-60.28
1
A
TRP
8
-51.02
-84.47
2
A
ALA
3
168.12
137.32
2
A
TRP
4
75.36
-51.13
2
A
TRP
8
-60.42
-86.19
3
A
ALA
3
168.16
141.81
3
A
TRP
4
172.56
-60.64
3
A
TRP
8
-49.42
-83.06
3
A
ARG
12
-37.46
-38.10
4
A
ALA
3
168.27
140.18
4
A
TRP
4
169.75
-59.52
4
A
TRP
8
-50.02
-84.85
4
A
ARG
12
-37.95
-36.64
5
A
ALA
3
167.88
141.75
5
A
TRP
4
171.51
-60.58
5
A
TRP
8
-59.01
-85.69
6
A
ALA
3
72.95
138.81
6
A
TRP
4
176.97
-61.08
6
A
TRP
8
-43.42
-82.63
7
A
ALA
3
-92.25
37.17
7
A
TRP
8
-52.87
-83.21
8
A
ALA
3
169.92
139.51
8
A
TRP
4
171.77
-59.92
8
A
TRP
8
-61.16
-84.64
9
A
LEU
2
-115.91
78.17
9
A
TRP
8
-55.09
-84.47
10
A
ALA
3
167.87
140.88
10
A
TRP
4
171.50
-60.41
10
A
TRP
8
-44.21
-83.02
10
A
ARG
12
-37.45
-38.77
11
A
ALA
3
175.86
128.30
11
A
TRP
4
74.26
-52.87
11
A
TRP
8
-65.12
-86.36
12
A
ALA
3
172.23
126.52
12
A
TRP
4
74.28
-51.78
12
A
TRP
8
-60.19
-84.71
13
A
ALA
3
167.76
141.47
13
A
TRP
4
170.37
-59.78
13
A
TRP
8
-68.10
-84.93
14
A
ALA
3
64.08
124.14
14
A
TRP
4
73.89
-52.52
14
A
TRP
8
-53.89
-82.44
15
A
ALA
3
168.89
140.05
15
A
TRP
4
170.07
-59.34
15
A
TRP
8
-51.98
-81.65
Structure of an indolicidin peptide derivative with P-->A substitution
1
N
N
A
TRP
4
A
TRP
4
HELX_P
A
ARG
13
A
ARG
13
1
1
10
covale
1.306
both
A
ARG
13
A
C
ARG
13
1_555
A
NH2
14
A
N
NH2
14
1_555
ANTIBIOTIC, ANTIMICROBIAL PROTEIN
alpha-helix, cationic antimicrobial peptide, ANTIBIOTIC, ANTIMICROBIAL PROTEIN
INDC_BOVIN
UNP
1
131
P33046
ILPWKWPWWPWRR
131
143
1HR1
1
13
P33046
A
1
1
13
1
PRO
engineered mutation
ALA
3
1HR1
A
P33046
UNP
133
3
1
PRO
engineered mutation
ALA
7
1HR1
A
P33046
UNP
137
7
1
PRO
engineered mutation
ALA
10
1HR1
A
P33046
UNP
140
10
BINDING SITE FOR RESIDUE NH2 A 14
A
NH2
14
Software
2
A
TRP
11
A
TRP
11
2
1_555
A
ARG
13
A
ARG
13
2
1_555
1
P 1