0.019268 0.011124 0.000000 0.000000 0.022249 0.000000 0.000000 0.000000 0.008703 0.00000 0.00000 0.00000 Davies /II, J.F. Matthews, D.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 51.900 51.900 114.900 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N N N 145 S C N 146 N C N 147 N O N 148 S C N 149 N C N 150 N C N 151 N C N 152 N O N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N N N 167 S C N 168 N C N 169 N O N 170 N C N 171 N C N 172 N C N 173 N C N 174 N O N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N N N 189 S C N 190 N C N 191 N O N 192 N C N 193 N C N 194 N C N 195 N C N 196 N N N 197 N O N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N N N 214 S C N 215 N C N 216 N O N 217 N C Y 218 N C Y 219 N C Y 220 N C Y 221 N C Y 222 N C Y 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N N N 237 S C N 238 N C N 239 N O N 240 N C N 241 N C N 242 N C N 243 N O N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N N N 254 S C N 255 N C N 256 N O N 257 N C N 258 N O N 259 N O N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N N N 268 S C N 269 N C N 270 N O N 271 R C N 272 N O N 273 N C N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N N N 285 S C N 286 N C N 287 N O N 288 N C Y 289 N C Y 290 N C Y 291 N C Y 292 N N Y 293 N C Y 294 N C Y 295 N C Y 296 N C Y 297 N C N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N N N 312 S C N 313 N C N 314 N O N 315 N C Y 316 N C Y 317 N C Y 318 N C Y 319 N C Y 320 N C Y 321 N C N 322 N O N 323 N O N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N N N 336 S C N 337 N C N 338 N O N 339 N C N 340 N C N 341 N C N 342 N O N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N doub N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing Y 214 N doub Y 215 N sing Y 216 N sing N 217 N sing Y 218 N doub N 219 N sing Y 220 N doub N 221 N sing Y 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N doub N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N doub N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N doub N 279 N sing N 280 N sing N 281 N sing N 282 N sing Y 283 N doub Y 284 N sing Y 285 N sing N 286 N sing Y 287 N doub Y 288 N sing Y 289 N sing N 290 N sing Y 291 N sing Y 292 N doub N 293 N sing Y 294 N doub N 295 N sing Y 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N doub N 307 N sing N 308 N sing N 309 N sing N 310 N sing Y 311 N doub Y 312 N sing Y 313 N sing N 314 N sing Y 315 N doub N 316 N sing Y 317 N doub N 318 N sing Y 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N doub N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing US Science SCIEAS 0038 0036-8075 252 88 95 1707186 Crystal structure of the ribonuclease H domain of HIV-1 reverse transcriptase. 1991 US J.Biol.Chem. JBCHA3 0071 0021-9258 266 14697 Proteolytic Release and Crystallization of the Rnase H Domain of Human Immunodeficiency Virus Type I Reverse Transcriptase 1991 10.2210/pdb1hrh/pdb pdb_00001hrh 1.000000 0.577350 0.000000 0.000000 1.154701 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 15031.130 RIBONUCLEASE H 2 man polymer no no YQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGII QAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKILFL YQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGII QAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKILFL A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lentivirus sample 11676 Human immunodeficiency virus 1 2.97 58.60 pdbx_database_status struct_conf struct_conf_type chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Version format compliance Derived calculations Other Data collection Database references 1 0 1992-01-15 1 1 2008-03-24 1 2 2011-07-13 1 3 2017-11-29 1 4 2024-02-07 _pdbx_database_status.process_site _database_2.pdbx_DOI _database_2.pdbx_database_accession Y BNL 1991-03-06 REL TYR 427 n 1 TYR 427 A GLN 428 n 2 GLN 428 A LEU 429 n 3 LEU 429 A GLU 430 n 4 GLU 430 A LYS 431 n 5 LYS 431 A GLU 432 n 6 GLU 432 A PRO 433 n 7 PRO 433 A ILE 434 n 8 ILE 434 A VAL 435 n 9 VAL 435 A GLY 436 n 10 GLY 436 A ALA 437 n 11 ALA 437 A GLU 438 n 12 GLU 438 A THR 439 n 13 THR 439 A PHE 440 n 14 PHE 440 A TYR 441 n 15 TYR 441 A VAL 442 n 16 VAL 442 A ASP 443 n 17 ASP 443 A GLY 444 n 18 GLY 444 A ALA 445 n 19 ALA 445 A ALA 446 n 20 ALA 446 A ASN 447 n 21 ASN 447 A ARG 448 n 22 ARG 448 A GLU 449 n 23 GLU 449 A THR 450 n 24 THR 450 A LYS 451 n 25 LYS 451 A LEU 452 n 26 LEU 452 A GLY 453 n 27 GLY 453 A LYS 454 n 28 LYS 454 A ALA 455 n 29 ALA 455 A GLY 456 n 30 GLY 456 A TYR 457 n 31 TYR 457 A VAL 458 n 32 VAL 458 A THR 459 n 33 THR 459 A ASN 460 n 34 ASN 460 A LYS 461 n 35 LYS 461 A GLY 462 n 36 GLY 462 A ARG 463 n 37 ARG 463 A GLN 464 n 38 GLN 464 A LYS 465 n 39 LYS 465 A VAL 466 n 40 VAL 466 A VAL 467 n 41 VAL 467 A PRO 468 n 42 PRO 468 A LEU 469 n 43 LEU 469 A THR 470 n 44 THR 470 A ASN 471 n 45 ASN 471 A THR 472 n 46 THR 472 A THR 473 n 47 THR 473 A ASN 474 n 48 ASN 474 A GLN 475 n 49 GLN 475 A LYS 476 n 50 LYS 476 A THR 477 n 51 THR 477 A GLU 478 n 52 GLU 478 A LEU 479 n 53 LEU 479 A GLN 480 n 54 GLN 480 A ALA 481 n 55 ALA 481 A ILE 482 n 56 ILE 482 A TYR 483 n 57 TYR 483 A LEU 484 n 58 LEU 484 A ALA 485 n 59 ALA 485 A LEU 486 n 60 LEU 486 A GLN 487 n 61 GLN 487 A ASP 488 n 62 ASP 488 A SER 489 n 63 SER 489 A GLY 490 n 64 GLY 490 A LEU 491 n 65 LEU 491 A GLU 492 n 66 GLU 492 A VAL 493 n 67 VAL 493 A ASN 494 n 68 ASN 494 A ILE 495 n 69 ILE 495 A VAL 496 n 70 VAL 496 A THR 497 n 71 THR 497 A ASP 498 n 72 ASP 498 A SER 499 n 73 SER 499 A GLN 500 n 74 GLN 500 A TYR 501 n 75 TYR 501 A ALA 502 n 76 ALA 502 A LEU 503 n 77 LEU 503 A GLY 504 n 78 GLY 504 A ILE 505 n 79 ILE 505 A ILE 506 n 80 ILE 506 A GLN 507 n 81 GLN 507 A ALA 508 n 82 ALA 508 A GLN 509 n 83 GLN 509 A PRO 510 n 84 PRO 510 A ASP 511 n 85 ASP 511 A LYS 512 n 86 LYS 512 A SER 513 n 87 SER 513 A GLU 514 n 88 GLU 514 A SER 515 n 89 SER 515 A GLU 516 n 90 GLU 516 A LEU 517 n 91 LEU 517 A VAL 518 n 92 VAL 518 A ASN 519 n 93 ASN 519 A GLN 520 n 94 GLN 520 A ILE 521 n 95 ILE 521 A ILE 522 n 96 ILE 522 A GLU 523 n 97 GLU 523 A GLN 524 n 98 GLN 524 A LEU 525 n 99 LEU 525 A ILE 526 n 100 ILE 526 A LYS 527 n 101 LYS 527 A LYS 528 n 102 LYS 528 A GLU 529 n 103 GLU 529 A LYS 530 n 104 LYS 530 A VAL 531 n 105 VAL 531 A TYR 532 n 106 TYR 532 A LEU 533 n 107 LEU 533 A ALA 534 n 108 ALA 534 A TRP 535 n 109 TRP 535 A VAL 536 n 110 VAL 536 A PRO 537 n 111 PRO 537 A n 112 538 A n 113 539 A n 114 540 A n 115 541 A n 116 542 A GLY 543 n 117 GLY 543 A GLY 544 n 118 GLY 544 A ASN 545 n 119 ASN 545 A GLU 546 n 120 GLU 546 A GLN 547 n 121 GLN 547 A VAL 548 n 122 VAL 548 A ASP 549 n 123 ASP 549 A LYS 550 n 124 LYS 550 A LEU 551 n 125 LEU 551 A VAL 552 n 126 VAL 552 A SER 553 n 127 SER 553 A ALA 554 n 128 ALA 554 A GLY 555 n 129 GLY 555 A ILE 556 n 130 ILE 556 A n 131 557 A n 132 558 A n 133 559 A n 134 560 A n 135 561 A n 136 562 A TYR 427 n 1 TYR 427 B GLN 428 n 2 GLN 428 B LEU 429 n 3 LEU 429 B GLU 430 n 4 GLU 430 B LYS 431 n 5 LYS 431 B GLU 432 n 6 GLU 432 B PRO 433 n 7 PRO 433 B ILE 434 n 8 ILE 434 B VAL 435 n 9 VAL 435 B GLY 436 n 10 GLY 436 B ALA 437 n 11 ALA 437 B GLU 438 n 12 GLU 438 B THR 439 n 13 THR 439 B PHE 440 n 14 PHE 440 B TYR 441 n 15 TYR 441 B VAL 442 n 16 VAL 442 B ASP 443 n 17 ASP 443 B GLY 444 n 18 GLY 444 B ALA 445 n 19 ALA 445 B ALA 446 n 20 ALA 446 B ASN 447 n 21 ASN 447 B ARG 448 n 22 ARG 448 B GLU 449 n 23 GLU 449 B THR 450 n 24 THR 450 B LYS 451 n 25 LYS 451 B LEU 452 n 26 LEU 452 B GLY 453 n 27 GLY 453 B LYS 454 n 28 LYS 454 B ALA 455 n 29 ALA 455 B GLY 456 n 30 GLY 456 B TYR 457 n 31 TYR 457 B VAL 458 n 32 VAL 458 B THR 459 n 33 THR 459 B ASN 460 n 34 ASN 460 B LYS 461 n 35 LYS 461 B GLY 462 n 36 GLY 462 B ARG 463 n 37 ARG 463 B GLN 464 n 38 GLN 464 B LYS 465 n 39 LYS 465 B VAL 466 n 40 VAL 466 B VAL 467 n 41 VAL 467 B PRO 468 n 42 PRO 468 B LEU 469 n 43 LEU 469 B THR 470 n 44 THR 470 B ASN 471 n 45 ASN 471 B THR 472 n 46 THR 472 B THR 473 n 47 THR 473 B ASN 474 n 48 ASN 474 B GLN 475 n 49 GLN 475 B LYS 476 n 50 LYS 476 B THR 477 n 51 THR 477 B GLU 478 n 52 GLU 478 B LEU 479 n 53 LEU 479 B GLN 480 n 54 GLN 480 B ALA 481 n 55 ALA 481 B ILE 482 n 56 ILE 482 B TYR 483 n 57 TYR 483 B LEU 484 n 58 LEU 484 B ALA 485 n 59 ALA 485 B LEU 486 n 60 LEU 486 B GLN 487 n 61 GLN 487 B ASP 488 n 62 ASP 488 B SER 489 n 63 SER 489 B GLY 490 n 64 GLY 490 B LEU 491 n 65 LEU 491 B GLU 492 n 66 GLU 492 B VAL 493 n 67 VAL 493 B ASN 494 n 68 ASN 494 B ILE 495 n 69 ILE 495 B VAL 496 n 70 VAL 496 B THR 497 n 71 THR 497 B ASP 498 n 72 ASP 498 B SER 499 n 73 SER 499 B GLN 500 n 74 GLN 500 B TYR 501 n 75 TYR 501 B ALA 502 n 76 ALA 502 B LEU 503 n 77 LEU 503 B GLY 504 n 78 GLY 504 B ILE 505 n 79 ILE 505 B ILE 506 n 80 ILE 506 B GLN 507 n 81 GLN 507 B ALA 508 n 82 ALA 508 B GLN 509 n 83 GLN 509 B PRO 510 n 84 PRO 510 B ASP 511 n 85 ASP 511 B LYS 512 n 86 LYS 512 B SER 513 n 87 SER 513 B GLU 514 n 88 GLU 514 B SER 515 n 89 SER 515 B GLU 516 n 90 GLU 516 B LEU 517 n 91 LEU 517 B VAL 518 n 92 VAL 518 B ASN 519 n 93 ASN 519 B GLN 520 n 94 GLN 520 B ILE 521 n 95 ILE 521 B ILE 522 n 96 ILE 522 B GLU 523 n 97 GLU 523 B GLN 524 n 98 GLN 524 B LEU 525 n 99 LEU 525 B ILE 526 n 100 ILE 526 B LYS 527 n 101 LYS 527 B LYS 528 n 102 LYS 528 B GLU 529 n 103 GLU 529 B LYS 530 n 104 LYS 530 B VAL 531 n 105 VAL 531 B TYR 532 n 106 TYR 532 B LEU 533 n 107 LEU 533 B ALA 534 n 108 ALA 534 B TRP 535 n 109 TRP 535 B VAL 536 n 110 VAL 536 B PRO 537 n 111 PRO 537 B n 112 538 B n 113 539 B n 114 540 B n 115 541 B n 116 542 B n 117 543 B GLY 544 n 118 GLY 544 B ASN 545 n 119 ASN 545 B GLU 546 n 120 GLU 546 B GLN 547 n 121 GLN 547 B VAL 548 n 122 VAL 548 B ASP 549 n 123 ASP 549 B LYS 550 n 124 LYS 550 B LEU 551 n 125 LEU 551 B VAL 552 n 126 VAL 552 B SER 553 n 127 SER 553 B ALA 554 n 128 ALA 554 B n 129 555 B n 130 556 B n 131 557 B n 132 558 B n 133 559 B n 134 560 B n 135 561 B n 136 562 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LYS 465 A O LYS 39 A N TYR 457 A N TYR 31 A O GLY 456 A O GLY 30 A N ASP 443 A N ASP 17 A O PHE 440 A O PHE 14 A N VAL 496 A N VAL 70 A O ILE 495 A O ILE 69 A N ALA 534 A N ALA 108 B O LYS 465 B O LYS 39 B N TYR 457 B N TYR 31 B O GLY 456 B O GLY 30 B N ASP 443 B N ASP 17 B O PHE 440 B O PHE 14 B N VAL 496 B N VAL 70 B O ILE 495 B O ILE 69 B N ALA 534 B N ALA 108 1 A CG GLN 428 A CG GLN 2 1 Y 1 A CD GLN 428 A CD GLN 2 1 Y 1 A OE1 GLN 428 A OE1 GLN 2 1 Y 1 A NE2 GLN 428 A NE2 GLN 2 1 Y 1 A CG LYS 431 A CG LYS 5 1 Y 1 A CD LYS 431 A CD LYS 5 1 Y 1 A CE LYS 431 A CE LYS 5 1 Y 1 A NZ LYS 431 A NZ LYS 5 1 Y 1 A CG ARG 448 A CG ARG 22 1 Y 1 A CD ARG 448 A CD ARG 22 1 Y 1 A NE ARG 448 A NE ARG 22 1 Y 1 A CZ ARG 448 A CZ ARG 22 1 Y 1 A NH1 ARG 448 A NH1 ARG 22 1 Y 1 A NH2 ARG 448 A NH2 ARG 22 1 Y 1 A CG LYS 451 A CG LYS 25 1 Y 1 A CD LYS 451 A CD LYS 25 1 Y 1 A CE LYS 451 A CE LYS 25 1 Y 1 A NZ LYS 451 A NZ LYS 25 1 Y 1 A CG ASN 471 A CG ASN 45 1 Y 1 A OD1 ASN 471 A OD1 ASN 45 1 Y 1 A ND2 ASN 471 A ND2 ASN 45 1 Y 1 A CG ASN 474 A CG ASN 48 1 Y 1 A OD1 ASN 474 A OD1 ASN 48 1 Y 1 A ND2 ASN 474 A ND2 ASN 48 1 Y 1 A CG ASP 511 A CG ASP 85 1 Y 1 A OD1 ASP 511 A OD1 ASP 85 1 Y 1 A OD2 ASP 511 A OD2 ASP 85 1 Y 1 A CG LYS 512 A CG LYS 86 1 Y 1 A CD LYS 512 A CD LYS 86 1 Y 1 A CE LYS 512 A CE LYS 86 1 Y 1 A NZ LYS 512 A NZ LYS 86 1 Y 1 A CG GLU 514 A CG GLU 88 1 Y 1 A CD GLU 514 A CD GLU 88 1 Y 1 A OE1 GLU 514 A OE1 GLU 88 1 Y 1 A OE2 GLU 514 A OE2 GLU 88 1 Y 1 A CG GLU 516 A CG GLU 90 1 Y 1 A CD GLU 516 A CD GLU 90 1 Y 1 A OE1 GLU 516 A OE1 GLU 90 1 Y 1 A OE2 GLU 516 A OE2 GLU 90 1 Y 1 A CG GLU 546 A CG GLU 120 1 Y 1 A CD GLU 546 A CD GLU 120 1 Y 1 A OE1 GLU 546 A OE1 GLU 120 1 Y 1 A OE2 GLU 546 A OE2 GLU 120 1 Y 1 A CG LYS 550 A CG LYS 124 1 Y 1 A CD LYS 550 A CD LYS 124 1 Y 1 A CE LYS 550 A CE LYS 124 1 Y 1 A NZ LYS 550 A NZ LYS 124 1 Y 1 B CG GLN 428 B CG GLN 2 1 Y 1 B CD GLN 428 B CD GLN 2 1 Y 1 B OE1 GLN 428 B OE1 GLN 2 1 Y 1 B NE2 GLN 428 B NE2 GLN 2 1 Y 1 B CG LYS 431 B CG LYS 5 1 Y 1 B CD LYS 431 B CD LYS 5 1 Y 1 B CE LYS 431 B CE LYS 5 1 Y 1 B NZ LYS 431 B NZ LYS 5 1 Y 1 B CG GLU 432 B CG GLU 6 1 Y 1 B CD GLU 432 B CD GLU 6 1 Y 1 B OE1 GLU 432 B OE1 GLU 6 1 Y 1 B OE2 GLU 432 B OE2 GLU 6 1 Y 1 B CG ARG 448 B CG ARG 22 1 Y 1 B CD ARG 448 B CD ARG 22 1 Y 1 B NE ARG 448 B NE ARG 22 1 Y 1 B CZ ARG 448 B CZ ARG 22 1 Y 1 B NH1 ARG 448 B NH1 ARG 22 1 Y 1 B NH2 ARG 448 B NH2 ARG 22 1 Y 1 B CG GLU 449 B CG GLU 23 1 Y 1 B CD GLU 449 B CD GLU 23 1 Y 1 B OE1 GLU 449 B OE1 GLU 23 1 Y 1 B OE2 GLU 449 B OE2 GLU 23 1 Y 1 B OG1 THR 450 B OG1 THR 24 1 Y 1 B CG2 THR 450 B CG2 THR 24 1 Y 1 B CG LYS 451 B CG LYS 25 1 Y 1 B CD LYS 451 B CD LYS 25 1 Y 1 B CE LYS 451 B CE LYS 25 1 Y 1 B NZ LYS 451 B NZ LYS 25 1 Y 1 B CG LYS 476 B CG LYS 50 1 Y 1 B CD LYS 476 B CD LYS 50 1 Y 1 B CE LYS 476 B CE LYS 50 1 Y 1 B NZ LYS 476 B NZ LYS 50 1 Y 1 B CG ASP 511 B CG ASP 85 1 Y 1 B OD1 ASP 511 B OD1 ASP 85 1 Y 1 B OD2 ASP 511 B OD2 ASP 85 1 Y 1 B CG LYS 512 B CG LYS 86 1 Y 1 B CD LYS 512 B CD LYS 86 1 Y 1 B CE LYS 512 B CE LYS 86 1 Y 1 B NZ LYS 512 B NZ LYS 86 1 Y 1 B CG GLU 514 B CG GLU 88 1 Y 1 B CD GLU 514 B CD GLU 88 1 Y 1 B OE1 GLU 514 B OE1 GLU 88 1 Y 1 B OE2 GLU 514 B OE2 GLU 88 1 Y 1 B CG GLU 516 B CG GLU 90 1 Y 1 B CD GLU 516 B CD GLU 90 1 Y 1 B OE1 GLU 516 B OE1 GLU 90 1 Y 1 B OE2 GLU 516 B OE2 GLU 90 1 Y 1 B CG GLU 523 B CG GLU 97 1 Y 1 B CD GLU 523 B CD GLU 97 1 Y 1 B OE1 GLU 523 B OE1 GLU 97 1 Y 1 B OE2 GLU 523 B OE2 GLU 97 1 Y 1 B CG1 ILE 526 B CG1 ILE 100 1 Y 1 B CG2 ILE 526 B CG2 ILE 100 1 Y 1 B CD1 ILE 526 B CD1 ILE 100 1 Y 1 B CG LYS 527 B CG LYS 101 1 Y 1 B CD LYS 527 B CD LYS 101 1 Y 1 B CE LYS 527 B CE LYS 101 1 Y 1 B NZ LYS 527 B NZ LYS 101 1 Y 1 B CG GLU 546 B CG GLU 120 1 Y 1 B CD GLU 546 B CD GLU 120 1 Y 1 B OE1 GLU 546 B OE1 GLU 120 1 Y 1 B OE2 GLU 546 B OE2 GLU 120 1 Y 1 B CG GLN 547 B CG GLN 121 1 Y 1 B CD GLN 547 B CD GLN 121 1 Y 1 B OE1 GLN 547 B OE1 GLN 121 1 Y 1 B NE2 GLN 547 B NE2 GLN 121 1 Y 1 B CG LYS 550 B CG LYS 124 1 Y 1 B CD LYS 550 B CD LYS 124 1 Y 1 B CE LYS 550 B CE LYS 124 1 Y 1 B NZ LYS 550 B NZ LYS 124 1 Y 1 A ALA 538 A ALA 112 1 Y 1 A HIS 539 A HIS 113 1 Y 1 A LYS 540 A LYS 114 1 Y 1 A GLY 541 A GLY 115 1 Y 1 A ILE 542 A ILE 116 1 Y 1 A ARG 557 A ARG 131 1 Y 1 A LYS 558 A LYS 132 1 Y 1 A ILE 559 A ILE 133 1 Y 1 A LEU 560 A LEU 134 1 Y 1 A PHE 561 A PHE 135 1 Y 1 A LEU 562 A LEU 136 1 Y 1 B ALA 538 B ALA 112 1 Y 1 B HIS 539 B HIS 113 1 Y 1 B LYS 540 B LYS 114 1 Y 1 B GLY 541 B GLY 115 1 Y 1 B ILE 542 B ILE 116 1 Y 1 B GLY 543 B GLY 117 1 Y 1 B GLY 555 B GLY 129 1 Y 1 B ILE 556 B ILE 130 1 Y 1 B ARG 557 B ARG 131 1 Y 1 B LYS 558 B LYS 132 1 Y 1 B ILE 559 B ILE 133 1 Y 1 B LEU 560 B LEU 134 1 Y 1 B PHE 561 B PHE 135 1 Y 1 B LEU 562 B LEU 136 1 Y 1 A ARG 463 0.118 SIDE CHAIN 1 5.19 0.50 120.30 125.49 A A A NE CZ NH1 ARG ARG ARG 463 463 463 N 1 -5.64 0.50 120.30 114.66 A A A NE CZ NH2 ARG ARG ARG 463 463 463 N 1 17.22 1.80 110.60 127.82 A A A N CA CB GLN GLN GLN 464 464 464 N 1 13.76 2.10 111.70 125.46 A A A CB CA C PRO PRO PRO 468 468 468 N 1 13.56 2.00 116.20 129.76 A A A CA C N SER SER GLY 489 489 490 Y 1 -14.22 2.10 122.30 108.08 A A A C N CA SER GLY GLY 489 490 490 Y 1 -11.67 1.90 111.40 99.73 A A A CB CA C VAL VAL VAL 493 493 493 N 1 -18.42 2.70 111.60 93.18 A A A CB CA C THR THR THR 497 497 497 N 1 10.30 1.40 112.40 122.70 A A A CA CB CG2 THR THR THR 497 497 497 N 1 10.52 0.90 118.30 128.82 A A A CB CG OD1 ASP ASP ASP 498 498 498 N 1 -5.88 0.90 118.30 112.42 A A A CB CG OD2 ASP ASP ASP 498 498 498 N 1 6.77 0.90 118.30 125.07 A A A CB CG OD1 ASP ASP ASP 549 549 549 N 1 7.67 1.20 123.30 130.97 B B B OE1 CD OE2 GLU GLU GLU 438 438 438 N 1 -17.89 2.20 111.50 93.61 B B B N CA CB VAL VAL VAL 442 442 442 N 1 13.35 1.60 110.90 124.25 B B B CG1 CB CG2 VAL VAL VAL 442 442 442 N 1 -13.23 2.10 122.30 109.07 B B B C N CA ALA GLY GLY 455 456 456 Y 1 -4.12 0.50 120.30 116.18 B B B NE CZ NH2 ARG ARG ARG 463 463 463 N 1 17.29 2.60 111.60 128.89 B B B CB CG CD GLN GLN GLN 475 475 475 N 1 14.66 2.30 115.30 129.96 B B B CA CB CG LEU LEU LEU 479 479 479 N 1 14.19 2.10 120.10 134.29 B B B CA C O LEU LEU LEU 479 479 479 N 1 23.38 2.70 111.00 134.38 B B B N CA C SER SER SER 489 489 489 N 1 16.11 2.00 116.20 132.31 B B B CA C N SER SER GLY 489 489 490 Y 1 -12.95 2.10 122.30 109.35 B B B C N CA SER GLY GLY 489 490 490 Y 1 -14.38 1.90 111.40 97.02 B B B CB CA C VAL VAL VAL 493 493 493 N 1 -16.84 2.70 111.60 94.76 B B B CB CA C THR THR THR 497 497 497 N 1 6.17 0.60 121.00 127.17 B B B CB CG CD2 TYR TYR TYR 501 501 501 N 1 -5.96 0.60 121.00 115.04 B B B CB CG CD1 TYR TYR TYR 501 501 501 N 1 13.27 2.20 113.40 126.67 B B B CA CB CG LYS LYS LYS 528 528 528 N 1 9.90 1.60 122.70 132.60 B B B O C N LYS LYS VAL 530 530 531 Y 1 -12.65 2.10 120.10 107.45 B B B CA C O LEU LEU LEU 533 533 533 N 1 14.49 2.00 110.40 124.89 B B B CB CA C ASN ASN ASN 545 545 545 N 1 A A CB OG SER SER 489 489 0.078 0.013 1.418 1.496 N 1 A A N CA GLY GLY 490 490 0.139 0.015 1.456 1.595 N 1 B B C O SER SER 489 489 0.114 0.019 1.229 1.343 N 1 B B N CA GLY GLY 490 490 0.154 0.015 1.456 1.610 N 1 A ASN 471 65.17 66.47 1 A ASP 511 -91.73 -61.21 1 B LYS 465 -170.02 136.65 1 B ASN 471 46.82 77.38 1 B GLN 509 64.08 60.35 1 B SER 553 -90.30 45.36 0.2000000 2.4 1 2.4 0 1803 0 0 1803 0.022 0.051 refinement PROLSQ CRYSTAL STRUCTURE OF THE RIBONUCLEASE H DOMAIN OF HIV-1 REVERSE TRANSCRIPTASE 1 N N 1 N N THE TRANSFORMATION PRESENTED ON *MTRIX 1* RECORDS BELOW WILL YIELD APPROXIMATE COORDINATES FOR CHAIN *A* WHEN APPLIED TO CHAIN *B*. A THR 473 A THR 47 HELX_P A ASP 488 A ASP 62 1 AA 16 A SER 499 A SER 73 HELX_P A GLN 509 A GLN 83 1 BA 11 A SER 515 A SER 89 HELX_P A LYS 528 A LYS 102 1 DA 14 A GLY 543 A GLY 117 HELX_P A SER 553 A SER 127 1 EA 11 B THR 473 B THR 47 HELX_P B ASP 488 B ASP 62 1 AB 16 B SER 499 B SER 73 HELX_P B GLN 509 B GLN 83 1 BB 11 B SER 515 B SER 89 HELX_P B LYS 528 B LYS 102 1 DB 14 HYDROLASE(ENDORIBONUCLEASE) HYDROLASE(ENDORIBONUCLEASE) given 0.369800 -0.787610 0.492860 -0.787990 -0.546920 -0.282750 0.492250 -0.283810 -0.822880 2.01380 58.75750 88.19490 POL_HV1B1 UNP 1 1 P03366 FFREDLAFLQGKAREFSSEQTRANSPTISSEQTRANSPTRRELQVWGRDNNSPSEAGADRQGTVSFNFPQITLWQRPLVT IKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQ IGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRK LVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGW KGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYE LHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEP VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPI QKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTT NQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVS AGIRKILFLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVI LVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSATVKAACWWAGIKQEFGIPYNPQSQGVVES MNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRNP LWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED 594 729 1HRH 427 562 P03366 A 1 1 136 594 729 1HRH 427 562 P03366 B 1 1 136 5 5 anti-parallel anti-parallel parallel parallel anti-parallel anti-parallel parallel parallel A ARG 463 A ARG 37 A LEU 469 A LEU 43 A LEU 452 A LEU 26 A THR 459 A THR 33 A GLU 438 A GLU 12 A ASN 447 A ASN 21 A LEU 491 A LEU 65 A THR 497 A THR 71 A LYS 530 A LYS 104 A VAL 536 A VAL 110 B ARG 463 B ARG 37 B LEU 469 B LEU 43 B LEU 452 B LEU 26 B THR 459 B THR 33 B GLU 438 B GLU 12 B ASN 447 B ASN 21 B LEU 491 B LEU 65 B THR 497 B THR 71 B LYS 530 B LYS 104 B VAL 536 B VAL 110 144 P 31