1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Zhang, H. Culyba, M. Volkman, H. Krugh, T.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking To be Published 0353 Structural Characterization of Six-Nucleotide RNA Hairpin loops: r(UUAAUU), r(UUAAAU), r(UUAACU) 10.2210/pdb1hs1/pdb pdb_00001hs1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 4117.502 5'-R(*GP*CP*GP*UP*UP*AP*AP*CP*UP*CP*GP*CP*A)-3' 1 syn polymer no no GCGUUAACUCGCA GCGUUAACUCGCA A polyribonucleotide n n n n n n n n n n n n n -5.999 1 19 A 1 A 12 0.829 A_G1:C12_A 1 -16.574 -0.348 -0.054 -0.166 2.875 1 19 A 2 A 11 -0.952 A_C2:G11_A 2 -16.572 -0.253 -0.019 -0.100 -9.295 1 19 A 3 A 10 1.480 A_G3:C10_A 3 -23.004 0.117 -0.222 -0.098 -3.034 1 16 A 4 A 9 12.405 A_U4:U9_A 4 -20.919 1.774 0.598 -1.764 2.738 29.656 A A 1 2 2.066 A A 12 11 2.811 1.057 -0.132 -2.043 AA_G1C2:G11C12_AA 1 0.108 -0.212 29.637 -4.181 0.277 1.853 36.039 A A 2 3 33.337 A A 11 10 3.294 19.570 0.181 -1.782 AA_C2G3:C10G11_AA 2 1.468 -2.501 30.377 -5.268 -0.114 2.688 36.797 A A 3 4 6.894 A A 10 9 2.943 4.334 0.553 -1.386 AA_G3U4:U9C10_AA 3 -4.177 6.645 36.318 -2.707 -1.369 database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2003-09-02 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name RNA hairpin loop UUAAGU as part of hairpin r(GCGUUAAGUCGCA) RNA hairpin loop UUAAUU as part of hairpin r(GCGUUAAUUCGCA) RNA hairpin loop UUAAAU as part of hairpin r(GCGUUAAAUCGCA) RNA hairpin loop UCAAUU as part of hairpin r(GCGUCAAUUCGCA) RCSB Y RCSB 2000-12-22 REL average structure of 30 conformers 30 1 2D NOESY 0.1 M NaCl, 0.01 M sodium phosphate 7.0 1.0 atm 303 K restrained molecular dynamics & energy minimization 1 mM RNA oligomer - H2O; 3 mM RNA oligomer - D2O MSI structure solution Discover version 2.98 MSI refinement Discover version 2.98 500 Varian INOVA G 1 n 1 G 1 A C 2 n 2 C 2 A G 3 n 3 G 3 A U 4 n 4 U 4 A U 5 n 5 U 5 A A 6 n 6 A 6 A A 7 n 7 A 7 A C 8 n 8 C 8 A U 9 n 9 U 9 A C 10 n 10 C 10 A G 11 n 11 G 11 A C 12 n 12 C 12 A A 13 n 13 A 13 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A U 9 0.094 SIDE CHAIN 1 4.76 0.70 108.50 113.26 A A A O4' C1' N1 C C C 2 2 2 N 1 5.23 0.70 108.50 113.73 A A A O4' C1' N1 U U U 4 4 4 N 1 4.55 0.60 114.90 119.45 A A A N1 C2 N3 U U U 4 4 4 N 1 4.41 0.60 114.90 119.31 A A A N1 C2 N3 U U U 5 5 5 N 1 3.22 0.40 105.80 109.02 A A A C8 N9 C4 A A A 6 6 6 N 1 2.98 0.40 105.80 108.78 A A A C8 N9 C4 A A A 7 7 7 N 1 5.59 0.70 108.50 114.09 A A A O4' C1' N1 C C C 8 8 8 N 1 5.20 0.70 108.50 113.70 A A A O4' C1' N1 U U U 9 9 9 N 1 4.11 0.60 114.90 119.01 A A A N1 C2 N3 U U U 9 9 9 N 1 4.58 0.70 108.50 113.08 A A A O4' C1' N1 C C C 10 10 10 N 1 4.80 0.70 108.50 113.30 A A A O4' C1' N1 C C C 12 12 12 N 1 2.86 0.40 105.80 108.66 A A A C8 N9 C4 A A A 13 13 13 N 1 A A N1 C6 C C 2 2 0.110 0.006 1.367 1.477 N 1 A A N1 C6 U U 4 4 0.102 0.009 1.375 1.477 N 1 A A N1 C6 U U 5 5 0.101 0.009 1.375 1.476 N 1 A A N1 C6 U U 9 9 0.098 0.009 1.375 1.473 N 1 A A N1 C6 C C 10 10 0.112 0.006 1.367 1.479 N 1 A A N1 C6 C C 12 12 0.109 0.006 1.367 1.476 N SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UUAACU AS PART OF HAIRPIN R(GCGUUAACUCGCA) 1 N N hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 A C 12 A N3 C 12 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 A C 12 A O2 C 12 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 A C 12 A N4 C 12 1_555 hydrog WATSON-CRICK A C 2 A N3 C 2 1_555 A G 11 A N1 G 11 1_555 hydrog WATSON-CRICK A C 2 A N4 C 2 1_555 A G 11 A O6 G 11 1_555 hydrog WATSON-CRICK A C 2 A O2 C 2 1_555 A G 11 A N2 G 11 1_555 hydrog WATSON-CRICK A G 3 A N1 G 3 1_555 A C 10 A N3 C 10 1_555 hydrog WATSON-CRICK A G 3 A N2 G 3 1_555 A C 10 A O2 C 10 1_555 hydrog WATSON-CRICK A G 3 A O6 G 3 1_555 A C 10 A N4 C 10 1_555 hydrog TYPE_16_PAIR A U 4 A N3 U 4 1_555 A U 9 A O4 U 9 1_555 hydrog TYPE_16_PAIR A U 4 A O2 U 4 1_555 A U 9 A N3 U 9 1_555 RNA ribonucleic acid, hairpin loop, RNA structure, RNA 1HS1 PDB 1 1HS1 1 13 1HS1 1 13 1HS1 A 1 1 13