1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Zhang, H.
Culyba, M.
Volkman, H.
Krugh, T.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
To be Published
0353
Structural Characterization of Six-Nucleotide RNA Hairpin loops: r(UUAAUU), r(UUAAAU), r(UUAACU)
10.2210/pdb1hs1/pdb
pdb_00001hs1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
4117.502
5'-R(*GP*CP*GP*UP*UP*AP*AP*CP*UP*CP*GP*CP*A)-3'
1
syn
polymer
no
no
GCGUUAACUCGCA
GCGUUAACUCGCA
A
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
-5.999
1
19
A
1
A
12
0.829
A_G1:C12_A
1
-16.574
-0.348
-0.054
-0.166
2.875
1
19
A
2
A
11
-0.952
A_C2:G11_A
2
-16.572
-0.253
-0.019
-0.100
-9.295
1
19
A
3
A
10
1.480
A_G3:C10_A
3
-23.004
0.117
-0.222
-0.098
-3.034
1
16
A
4
A
9
12.405
A_U4:U9_A
4
-20.919
1.774
0.598
-1.764
2.738
29.656
A
A
1
2
2.066
A
A
12
11
2.811
1.057
-0.132
-2.043
AA_G1C2:G11C12_AA
1
0.108
-0.212
29.637
-4.181
0.277
1.853
36.039
A
A
2
3
33.337
A
A
11
10
3.294
19.570
0.181
-1.782
AA_C2G3:C10G11_AA
2
1.468
-2.501
30.377
-5.268
-0.114
2.688
36.797
A
A
3
4
6.894
A
A
10
9
2.943
4.334
0.553
-1.386
AA_G3U4:U9C10_AA
3
-4.177
6.645
36.318
-2.707
-1.369
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-09-02
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
RNA hairpin loop UUAAGU as part of hairpin r(GCGUUAAGUCGCA)
RNA hairpin loop UUAAUU as part of hairpin r(GCGUUAAUUCGCA)
RNA hairpin loop UUAAAU as part of hairpin r(GCGUUAAAUCGCA)
RNA hairpin loop UCAAUU as part of hairpin r(GCGUCAAUUCGCA)
RCSB
Y
RCSB
2000-12-22
REL
average structure of 30 conformers
30
1
2D NOESY
0.1 M NaCl, 0.01 M sodium phosphate
7.0
1.0 atm
303
K
restrained molecular dynamics & energy minimization
1 mM RNA oligomer - H2O;
3 mM RNA oligomer - D2O
MSI
structure solution
Discover
version 2.98
MSI
refinement
Discover
version 2.98
500
Varian
INOVA
G
1
n
1
G
1
A
C
2
n
2
C
2
A
G
3
n
3
G
3
A
U
4
n
4
U
4
A
U
5
n
5
U
5
A
A
6
n
6
A
6
A
A
7
n
7
A
7
A
C
8
n
8
C
8
A
U
9
n
9
U
9
A
C
10
n
10
C
10
A
G
11
n
11
G
11
A
C
12
n
12
C
12
A
A
13
n
13
A
13
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
U
9
0.094
SIDE CHAIN
1
4.76
0.70
108.50
113.26
A
A
A
O4'
C1'
N1
C
C
C
2
2
2
N
1
5.23
0.70
108.50
113.73
A
A
A
O4'
C1'
N1
U
U
U
4
4
4
N
1
4.55
0.60
114.90
119.45
A
A
A
N1
C2
N3
U
U
U
4
4
4
N
1
4.41
0.60
114.90
119.31
A
A
A
N1
C2
N3
U
U
U
5
5
5
N
1
3.22
0.40
105.80
109.02
A
A
A
C8
N9
C4
A
A
A
6
6
6
N
1
2.98
0.40
105.80
108.78
A
A
A
C8
N9
C4
A
A
A
7
7
7
N
1
5.59
0.70
108.50
114.09
A
A
A
O4'
C1'
N1
C
C
C
8
8
8
N
1
5.20
0.70
108.50
113.70
A
A
A
O4'
C1'
N1
U
U
U
9
9
9
N
1
4.11
0.60
114.90
119.01
A
A
A
N1
C2
N3
U
U
U
9
9
9
N
1
4.58
0.70
108.50
113.08
A
A
A
O4'
C1'
N1
C
C
C
10
10
10
N
1
4.80
0.70
108.50
113.30
A
A
A
O4'
C1'
N1
C
C
C
12
12
12
N
1
2.86
0.40
105.80
108.66
A
A
A
C8
N9
C4
A
A
A
13
13
13
N
1
A
A
N1
C6
C
C
2
2
0.110
0.006
1.367
1.477
N
1
A
A
N1
C6
U
U
4
4
0.102
0.009
1.375
1.477
N
1
A
A
N1
C6
U
U
5
5
0.101
0.009
1.375
1.476
N
1
A
A
N1
C6
U
U
9
9
0.098
0.009
1.375
1.473
N
1
A
A
N1
C6
C
C
10
10
0.112
0.006
1.367
1.479
N
1
A
A
N1
C6
C
C
12
12
0.109
0.006
1.367
1.476
N
SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UUAACU AS PART OF HAIRPIN R(GCGUUAACUCGCA)
1
N
N
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
A
C
12
A
N3
C
12
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
A
C
12
A
O2
C
12
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
A
C
12
A
N4
C
12
1_555
hydrog
WATSON-CRICK
A
C
2
A
N3
C
2
1_555
A
G
11
A
N1
G
11
1_555
hydrog
WATSON-CRICK
A
C
2
A
N4
C
2
1_555
A
G
11
A
O6
G
11
1_555
hydrog
WATSON-CRICK
A
C
2
A
O2
C
2
1_555
A
G
11
A
N2
G
11
1_555
hydrog
WATSON-CRICK
A
G
3
A
N1
G
3
1_555
A
C
10
A
N3
C
10
1_555
hydrog
WATSON-CRICK
A
G
3
A
N2
G
3
1_555
A
C
10
A
O2
C
10
1_555
hydrog
WATSON-CRICK
A
G
3
A
O6
G
3
1_555
A
C
10
A
N4
C
10
1_555
hydrog
TYPE_16_PAIR
A
U
4
A
N3
U
4
1_555
A
U
9
A
O4
U
9
1_555
hydrog
TYPE_16_PAIR
A
U
4
A
O2
U
4
1_555
A
U
9
A
N3
U
9
1_555
RNA
ribonucleic acid, hairpin loop, RNA structure, RNA
1HS1
PDB
1
1HS1
1
13
1HS1
1
13
1HS1
A
1
1
13