1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Zhang, H. Fountain, M.A. Krugh, T.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 R C N 49 N O N 50 R C N 51 N N N 52 N C N 53 N O N 54 N N N 55 N C N 56 N N N 57 N C N 58 N C N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N O N 74 N P N 75 N O N 76 N O N 77 N O N 78 N C N 79 R C N 80 N O N 81 S C N 82 N O N 83 R C N 84 N O N 85 R C Y 86 N N Y 87 N C Y 88 N N Y 89 N C N 90 N C N 91 N O N 92 N N N 93 N C N 94 N N N 95 N N Y 96 N C N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N P N 113 N O N 114 N O N 115 N O N 116 N C N 117 R C N 118 N O N 119 S C N 120 N O N 121 R C N 122 N O N 123 R C N 124 N N N 125 N C N 126 N O N 127 N N N 128 N C N 129 N O N 130 N C N 131 N C N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N doub N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing Y 100 N sing Y 101 N sing Y 102 N doub N 103 N sing Y 104 N sing N 105 N sing Y 106 N doub N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing US Biochemistry BICHAW 0033 0006-2960 40 9879 9886 10.1021/bi011226x 11502181 Structural characterization of a six-nucleotide RNA hairpin loop found in Escherichia coli, r(UUAAGU). 2001 10.2210/pdb1hs2/pdb pdb_00001hs2 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 4157.526 5'-R(*GP*CP*GP*UP*UP*AP*AP*GP*UP*CP*GP*CP*A)-3' 1 syn polymer no no GCGUUAAGUCGCA GCGUUAAGUCGCA A polyribonucleotide n n n n n n n n n n n n n -6.833 1 19 A 1 A 12 -2.253 A_G1:C12_A 1 -17.720 -0.414 0.065 -0.073 3.047 1 19 A 2 A 11 -2.293 A_C2:G11_A 2 -15.172 -0.436 0.070 0.047 -5.893 1 19 A 3 A 10 2.620 A_G3:C10_A 3 -23.235 0.142 -0.404 -0.035 1.212 1 16 A 4 A 9 12.384 A_U4:U9_A 4 -20.824 1.877 0.391 -1.710 2.873 29.923 A A 1 2 1.042 A A 12 11 2.908 0.538 -0.057 -1.869 AA_G1C2:G11C12_AA 1 0.482 -0.933 29.914 -3.719 0.198 1.889 35.406 A A 2 3 33.518 A A 11 10 3.372 19.317 0.284 -1.825 AA_C2G3:C10G11_AA 2 2.411 -4.184 29.718 -5.503 -0.155 2.759 37.725 A A 3 4 3.958 A A 10 9 2.968 2.547 0.487 -1.423 AA_G3U4:U9C10_AA 3 -6.029 9.368 37.174 -2.492 -1.440 database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Data collection 1 0 2001-08-29 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-23 1 4 2024-05-22 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name RNA hairpin loop UUAACU as part of hairpin r(GCGUUAACUCGCA) RNA hairpin loop UUAAUU as part of hairpin r(GCGUUAAUUCGCA) RNA hairpin loop UUAAAU as part of hairpin r(GCGUUAAAUCGCA) RNA hairpin loop UCAAUU as part of hairpin r(GCGUCAAUUCGCA) RCSB Y RCSB 2000-12-22 REL average structure of 30 conformers 30 1 2D NOESY 0.1 M NaCl, 0.01 M sodium phosphate 7.0 1.0 atm 303 K restrained molecular dynamics & energy minimization 1 mM RNA oligomer - H2O; 3 mM RNA oligomer - D2O MSI structure solution Discover version 2.98 MSI refinement Discover version 2.98 500 Varian INOVA G 1 n 1 G 1 A C 2 n 2 C 2 A G 3 n 3 G 3 A U 4 n 4 U 4 A U 5 n 5 U 5 A A 6 n 6 A 6 A A 7 n 7 A 7 A G 8 n 8 G 8 A U 9 n 9 U 9 A C 10 n 10 C 10 A G 11 n 11 G 11 A C 12 n 12 C 12 A A 13 n 13 A 13 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A 6 0.055 SIDE CHAIN 1 4.68 0.70 108.50 113.18 A A A O4' C1' N1 U U U 4 4 4 N 1 4.61 0.70 108.50 113.11 A A A O4' C1' N1 U U U 9 9 9 N 1 4.79 0.70 108.50 113.29 A A A O4' C1' N1 C C C 12 12 12 N SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UUAAGU AS PART OF HAIRPIN R(GCGUUAAGUCGCA) 1 N N hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 A C 12 A N3 C 12 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 A C 12 A O2 C 12 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 A C 12 A N4 C 12 1_555 hydrog WATSON-CRICK A C 2 A N3 C 2 1_555 A G 11 A N1 G 11 1_555 hydrog WATSON-CRICK A C 2 A N4 C 2 1_555 A G 11 A O6 G 11 1_555 hydrog WATSON-CRICK A C 2 A O2 C 2 1_555 A G 11 A N2 G 11 1_555 hydrog WATSON-CRICK A G 3 A N1 G 3 1_555 A C 10 A N3 C 10 1_555 hydrog WATSON-CRICK A G 3 A N2 G 3 1_555 A C 10 A O2 C 10 1_555 hydrog WATSON-CRICK A G 3 A O6 G 3 1_555 A C 10 A N4 C 10 1_555 hydrog TYPE_16_PAIR A U 4 A N3 U 4 1_555 A U 9 A O4 U 9 1_555 hydrog TYPE_16_PAIR A U 4 A O2 U 4 1_555 A U 9 A N3 U 9 1_555 RNA ribonucleic acid, hairpin loop, RNA structure, 30S Ribosome, RNA 1HS2 PDB 1 1HS2 1 13 1HS2 1 13 1HS2 A 1 1 13