1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Zhang, H.
Culyba, M.
Volkman, H.
Krugh, T.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
To be Published
0353
Structural Characterization of Six-Nucleotide RNA Hairpin loops: r(UUAAUU), r(UUAAAU), r(UUAACU)
10.2210/pdb1hs3/pdb
pdb_00001hs3
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
4118.486
5'-R(*GP*CP*GP*UP*UP*AP*AP*UP*UP*CP*GP*CP*A)-3'
1
syn
polymer
no
no
GCGUUAAUUCGCA
GCGUUAAUUCGCA
A
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
-3.353
1
19
A
1
A
12
-0.875
A_G1:C12_A
1
-17.479
-0.587
0.076
-0.133
6.104
1
19
A
2
A
11
-0.704
A_C2:G11_A
2
-18.078
-0.124
-0.040
0.001
-3.192
1
19
A
3
A
10
2.689
A_G3:C10_A
3
-21.561
-0.001
-0.268
-0.041
6.058
1
16
A
4
A
9
14.029
A_U4:U9_A
4
-19.760
1.778
0.478
-1.726
2.912
32.177
A
A
1
2
-0.154
A
A
12
11
2.912
-0.085
-0.064
-1.837
AA_G1C2:G11C12_AA
1
1.210
-2.183
32.155
-3.300
0.307
1.632
34.405
A
A
2
3
35.793
A
A
11
10
3.285
19.921
0.199
-1.895
AA_C2G3:C10G11_AA
2
0.483
-0.868
28.191
-5.790
-0.274
2.659
37.828
A
A
3
4
2.815
A
A
10
9
2.854
1.815
0.516
-1.365
AA_G3U4:U9C10_AA
3
-6.641
10.297
37.219
-2.304
-1.522
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-09-02
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
RNA hairpin loop UUAACU as part of hairpin r(GCGUUAACUCGCA)
RNA hairpin loop UUAAGU as part of hairpin r(GCGUUAAGUCGCA)
RNA hairpin loop UUAAAU as part of hairpin r(GCGUUAAAUCGCA)
RNA hairpin loop UCAAUU as part of hairpin r(GCGUCAAUUCGCA)
RCSB
Y
RCSB
2000-12-22
REL
average structure of 30 conformers
30
1
2D NOESY
0.1 M NaCl, 0.01 M sodium phosphate
7.0
1.0 atm
303
K
restrained molecular dynamics & energy minimization
1 mM RNA oligomer - H2O;
3 mM RNA oligomer - D2O
MSI
structure solution
Discover
version 2.98
MSI
refinement
Discover
version 2.98
500
Varian
INOVA
G
1
n
1
G
1
A
C
2
n
2
C
2
A
G
3
n
3
G
3
A
U
4
n
4
U
4
A
U
5
n
5
U
5
A
A
6
n
6
A
6
A
A
7
n
7
A
7
A
U
8
n
8
U
8
A
U
9
n
9
U
9
A
C
10
n
10
C
10
A
G
11
n
11
G
11
A
C
12
n
12
C
12
A
A
13
n
13
A
13
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
6
0.072
SIDE CHAIN
1
A
U
8
0.061
SIDE CHAIN
1
A
C
10
0.057
SIDE CHAIN
1
4.50
0.70
108.50
113.00
A
A
A
O4'
C1'
N1
U
U
U
4
4
4
N
1
5.05
0.70
108.50
113.55
A
A
A
O4'
C1'
N1
C
C
C
10
10
10
N
1
4.86
0.70
108.50
113.36
A
A
A
O4'
C1'
N1
C
C
C
12
12
12
N
SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UUAAUU AS PART OF HAIRPIN R(GCGUUAAUUCGCA)
1
N
N
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
A
C
12
A
N3
C
12
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
A
C
12
A
O2
C
12
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
A
C
12
A
N4
C
12
1_555
hydrog
WATSON-CRICK
A
C
2
A
N3
C
2
1_555
A
G
11
A
N1
G
11
1_555
hydrog
WATSON-CRICK
A
C
2
A
N4
C
2
1_555
A
G
11
A
O6
G
11
1_555
hydrog
WATSON-CRICK
A
C
2
A
O2
C
2
1_555
A
G
11
A
N2
G
11
1_555
hydrog
WATSON-CRICK
A
G
3
A
N1
G
3
1_555
A
C
10
A
N3
C
10
1_555
hydrog
WATSON-CRICK
A
G
3
A
N2
G
3
1_555
A
C
10
A
O2
C
10
1_555
hydrog
WATSON-CRICK
A
G
3
A
O6
G
3
1_555
A
C
10
A
N4
C
10
1_555
hydrog
TYPE_16_PAIR
A
U
4
A
N3
U
4
1_555
A
U
9
A
O4
U
9
1_555
hydrog
TYPE_16_PAIR
A
U
4
A
O2
U
4
1_555
A
U
9
A
N3
U
9
1_555
RNA
ribonucleic acid, hairpin loop, RNA structure, RNA
1HS3
PDB
1
1HS3
1
13
1HS3
1
13
1HS3
A
1
1
13