1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Zhang, H.
Ricart, B.
Huck, M.
Krugh, T.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
To be Published
0353
Structural Characterization of Six-Nucleotide RNA Hairpin loops r(UCAAUU)
10.2210/pdb1hs8/pdb
pdb_00001hs8
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
4117.501
5'-R(*GP*CP*GP*UP*CP*AP*AP*UP*UP*CP*GP*CP*A)-3'
1
syn
polymer
no
no
GCGUCAAUUCGCA
GCGUCAAUUCGCA
A
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
-3.611
1
19
A
1
A
12
-0.947
A_G1:C12_A
1
-15.759
-0.780
0.010
-0.276
3.489
1
19
A
2
A
11
-1.029
A_C2:G11_A
2
-16.601
-0.169
-0.062
-0.070
-9.092
1
19
A
3
A
10
1.658
A_G3:C10_A
3
-20.931
0.150
-0.389
-0.085
-0.925
1
16
A
4
A
9
11.337
A_U4:U9_A
4
-17.192
2.253
0.447
-1.775
2.868
33.598
A
A
1
2
1.365
A
A
12
11
2.914
0.789
-0.048
-1.904
AA_G1C2:G11C12_AA
1
0.622
-1.077
33.583
-3.409
0.174
1.930
35.285
A
A
2
3
33.062
A
A
11
10
3.403
19.022
0.221
-1.839
AA_C2G3:C10G11_AA
2
2.111
-3.670
29.783
-5.542
-0.087
2.699
38.178
A
A
3
4
4.561
A
A
10
9
2.924
2.971
0.601
-1.411
AA_G3U4:U9C10_AA
3
-5.465
8.390
37.686
-2.482
-1.516
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-09-02
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
RNA hairpin loop UUAACU as part of hairpin r(GCGUUAACUCGCA)
RNA hairpin loop UUAAGU as part of hairpin r(GCGUUAAGUCGCA)
RNA hairpin loop UUAAUU as part of hairpin r(GCGUUAAUUCGCA)
RNA hairpin loop UUAAAU as part of hairpin r(GCGUUAAAUCGCA)
RCSB
Y
RCSB
2000-12-25
REL
average structure of 30 conformers
30
1
2D NOESY
0.05 M NaCl, 0.005 M sodium phosphate
6.0
1.0 atm
293
K
restrained molecular dynamics & energy minimization
1 mM RNA oligomer - H2O;
1 mM RNA oligomer - D2O
MSI
structure solution
Discover
version 2.98
MSI
refinement
Discover
version 2.98
500
Varian
INOVA
G
1
n
1
G
1
A
C
2
n
2
C
2
A
G
3
n
3
G
3
A
U
4
n
4
U
4
A
C
5
n
5
C
5
A
A
6
n
6
A
6
A
A
7
n
7
A
7
A
U
8
n
8
U
8
A
U
9
n
9
U
9
A
C
10
n
10
C
10
A
G
11
n
11
G
11
A
C
12
n
12
C
12
A
A
13
n
13
A
13
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
U
8
0.058
SIDE CHAIN
1
4.93
0.70
108.50
113.43
A
A
A
O4'
C1'
N1
U
U
U
4
4
4
N
1
4.22
0.70
108.50
112.72
A
A
A
O4'
C1'
N1
C
C
C
10
10
10
N
1
4.23
0.70
108.50
112.73
A
A
A
O4'
C1'
N1
C
C
C
12
12
12
N
SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UCAAUU AS PART OF HAIRPIN R(GCGUCAAUUCGCA)
1
N
N
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
A
C
12
A
N3
C
12
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
A
C
12
A
O2
C
12
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
A
C
12
A
N4
C
12
1_555
hydrog
WATSON-CRICK
A
C
2
A
N3
C
2
1_555
A
G
11
A
N1
G
11
1_555
hydrog
WATSON-CRICK
A
C
2
A
N4
C
2
1_555
A
G
11
A
O6
G
11
1_555
hydrog
WATSON-CRICK
A
C
2
A
O2
C
2
1_555
A
G
11
A
N2
G
11
1_555
hydrog
WATSON-CRICK
A
G
3
A
N1
G
3
1_555
A
C
10
A
N3
C
10
1_555
hydrog
WATSON-CRICK
A
G
3
A
N2
G
3
1_555
A
C
10
A
O2
C
10
1_555
hydrog
WATSON-CRICK
A
G
3
A
O6
G
3
1_555
A
C
10
A
N4
C
10
1_555
hydrog
TYPE_16_PAIR
A
U
4
A
N3
U
4
1_555
A
U
9
A
O4
U
9
1_555
hydrog
TYPE_16_PAIR
A
U
4
A
O2
U
4
1_555
A
U
9
A
N3
U
9
1_555
RNA
ribonucleic acid, hairpin loop, RNA structure, RNA
1HS8
PDB
1
1HS8
1
13
1HS8
1
13
1HS8
A
1
1
13