1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Read, C.M.
Cary, P.D.
Crane-Robinson, C.
Driscoll, P.C.
Carillo, M.O.M.
Norman, D.G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C2 H6 O S
78.133
BETA-MERCAPTOETHANOL
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
The Structure of the Hmg Box and its Interaction with DNA
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
21
3427
Solution Structure of a DNA-Binding Domain from Hmg1
1993
10.2210/pdb1hsm/pdb
pdb_00001hsm
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
8843.149
HIGH MOBILITY GROUP PROTEIN 1
1
man
polymer
78.133
BETA-MERCAPTOETHANOL
1
syn
non-polymer
no
no
NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAA
NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Chinese hamster
Cricetulus
Escherichia
sample
INSERT DERIVED BY PCR
10029
Cricetulus griseus
562
Escherichia coli
DH5 ALPHA
PGEX-2T
PGEX-2T GENE: INSERT DERIVED BY PCR
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1995-02-07
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1994-11-17
REL
BME
BETA-MERCAPTOETHANOL
1
NILGES
refinement
SIMULATED ANNEALING
BRUNGER
refinement
X-PLOR
3.0
BME
16
2
BME
BME
82
A
ASN
3
n
1
ASN
3
A
ALA
4
n
2
ALA
4
A
PRO
5
n
3
PRO
5
A
LYS
6
n
4
LYS
6
A
ARG
7
n
5
ARG
7
A
PRO
8
n
6
PRO
8
A
PRO
9
n
7
PRO
9
A
SER
10
n
8
SER
10
A
ALA
11
n
9
ALA
11
A
PHE
12
n
10
PHE
12
A
PHE
13
n
11
PHE
13
A
LEU
14
n
12
LEU
14
A
PHE
15
n
13
PHE
15
A
CYS
16
n
14
CYS
16
A
SER
17
n
15
SER
17
A
GLU
18
n
16
GLU
18
A
TYR
19
n
17
TYR
19
A
ARG
20
n
18
ARG
20
A
PRO
21
n
19
PRO
21
A
LYS
22
n
20
LYS
22
A
ILE
23
n
21
ILE
23
A
LYS
24
n
22
LYS
24
A
GLY
25
n
23
GLY
25
A
GLU
26
n
24
GLU
26
A
HIS
27
n
25
HIS
27
A
PRO
28
n
26
PRO
28
A
GLY
29
n
27
GLY
29
A
LEU
30
n
28
LEU
30
A
SER
31
n
29
SER
31
A
ILE
32
n
30
ILE
32
A
GLY
33
n
31
GLY
33
A
ASP
34
n
32
ASP
34
A
VAL
35
n
33
VAL
35
A
ALA
36
n
34
ALA
36
A
LYS
37
n
35
LYS
37
A
LYS
38
n
36
LYS
38
A
LEU
39
n
37
LEU
39
A
GLY
40
n
38
GLY
40
A
GLU
41
n
39
GLU
41
A
MET
42
n
40
MET
42
A
TRP
43
n
41
TRP
43
A
ASN
44
n
42
ASN
44
A
ASN
45
n
43
ASN
45
A
THR
46
n
44
THR
46
A
ALA
47
n
45
ALA
47
A
ALA
48
n
46
ALA
48
A
ASP
49
n
47
ASP
49
A
ASP
50
n
48
ASP
50
A
LYS
51
n
49
LYS
51
A
GLN
52
n
50
GLN
52
A
PRO
53
n
51
PRO
53
A
TYR
54
n
52
TYR
54
A
GLU
55
n
53
GLU
55
A
LYS
56
n
54
LYS
56
A
LYS
57
n
55
LYS
57
A
ALA
58
n
56
ALA
58
A
ALA
59
n
57
ALA
59
A
LYS
60
n
58
LYS
60
A
LEU
61
n
59
LEU
61
A
LYS
62
n
60
LYS
62
A
GLU
63
n
61
GLU
63
A
LYS
64
n
62
LYS
64
A
TYR
65
n
63
TYR
65
A
GLU
66
n
64
GLU
66
A
LYS
67
n
65
LYS
67
A
ASP
68
n
66
ASP
68
A
ILE
69
n
67
ILE
69
A
ALA
70
n
68
ALA
70
A
ALA
71
n
69
ALA
71
A
TYR
72
n
70
TYR
72
A
ARG
73
n
71
ARG
73
A
ALA
74
n
72
ALA
74
A
LYS
75
n
73
LYS
75
A
GLY
76
n
74
GLY
76
A
LYS
77
n
75
LYS
77
A
PRO
78
n
76
PRO
78
A
ASP
79
n
77
ASP
79
A
ALA
80
n
78
ALA
80
A
ALA
81
n
79
ALA
81
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
ARG
7
0.305
SIDE CHAIN
1
A
ARG
20
0.316
SIDE CHAIN
1
A
ARG
73
0.158
SIDE CHAIN
1
-3.83
0.60
121.00
117.17
A
A
A
CB
CG
CD2
TYR
TYR
TYR
19
19
19
N
1
-7.59
1.00
110.10
102.51
A
A
A
CG
CD1
NE1
TRP
TRP
TRP
43
43
43
N
1
8.49
0.90
109.00
117.49
A
A
A
CD1
NE1
CE2
TRP
TRP
TRP
43
43
43
N
1
8.32
1.10
130.40
138.72
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
43
43
43
N
1
-6.13
1.00
107.30
101.17
A
A
A
NE1
CE2
CD2
TRP
TRP
TRP
43
43
43
N
1
A
ALA
4
116.46
90.05
1
A
PRO
9
-27.06
169.13
1
A
ALA
11
133.48
-51.97
1
A
ARG
20
-20.12
-64.58
1
A
PRO
28
-77.91
37.43
1
A
ALA
47
129.84
-52.65
1
A
ALA
48
109.67
-42.06
1
A
GLN
52
-26.10
-57.98
1
A
LYS
75
149.10
68.85
1
A
LYS
77
-22.44
156.19
1
A
ALA
80
-131.74
-54.28
model building
X-PLOR
3.0
refinement
X-PLOR
3.0
phasing
X-PLOR
3.0
THE STRUCTURE OF THE HMG BOX AND ITS INTERACTION WITH DNA
1
Y
N
2
N
N
A
PHE
12
A
PHE
10
HELX_P
A
GLU
18
A
GLU
16
1
H1
7
A
PRO
21
A
PRO
19
HELX_P
H1 AND H1' BEND AROUND H2
A
GLU
26
A
GLU
24
1
H1'
6
A
GLY
33
A
GLY
31
HELX_P
A
ASN
44
A
ASN
42
1
H2
12
A
PRO
53
A
PRO
51
HELX_P
A
ARG
73
A
ARG
71
1
H3
21
covale
2.019
none
A
CYS
16
A
SG
CYS
14
1_555
A
BME
82
B
S2
BME
1_555
DNA-BINDING
DNA-BINDING
HMG1_CRIGR
UNP
1
1
P07156
GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP
KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAA
YRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
92
170
1HSM
3
81
P07156
A
1
1
79
BINDING SITE FOR RESIDUE BME A 82
A
BME
82
Software
4
A
CYS
16
A
CYS
14
4
1_555
A
SER
17
A
SER
15
4
1_555
A
ILE
32
A
ILE
30
4
1_555
A
ALA
36
A
ALA
34
4
1_555
1
P 1