0.016303
0.000000
0.000000
0.000000
0.018057
0.000000
0.000000
0.000000
0.029612
0.00000
0.00000
0.00000
Pares, S.
Cohen-Addad, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
61.340
55.380
33.770
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C11 H23 N O3 S3
313.500
6-(HYDROXYETHYLDITHIO)-8-(AMINOMETHYLTHIO)OCTANOIC ACID
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
2
63
68
10.1038/nsb0195-63
7719855
The lipoamide arm in the glycine decarboxylase complex is not freely swinging.
1995
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
91
4850
X-Ray Structure Determination at 2.6 Angstroms Resolution of a Lipoate-Containing Protein: The H-Protein of the Glycine Decarboxylase Complex from Pea Leaves
1994
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
13962.464
H-PROTEIN
1.4.4.2
1
man
polymer
313.500
6-(HYDROXYETHYLDITHIO)-8-(AMINOMETHYLTHIO)OCTANOIC ACID
1
syn
non-polymer
18.015
water
145
nat
water
no
no
SNVLDGLKYAPSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVN
TGLTGKPGLINSSPYEDGWMIKIKPTSPDELESLLGAKEYTKFCEEEDAAH
SNVLDGLKYAPSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVN
TGLTGKPGLINSSPYEDGWMIKIKPTSPDELESLLGAKEYTKFCEEEDAAH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
pea
Pisum
sample
3888
Pisum sativum
2.05
40.08
repository
Initial release
Version format compliance
Version format compliance
1
0
1995-03-31
1
1
2008-03-03
1
2
2011-07-13
Y
1995-01-11
REL
OSS
6-(HYDROXYETHYLDITHIO)-8-(AMINOMETHYLTHIO)OCTANOIC ACID
HOH
water
COMPND
H-PROTEIN CHARGED IN METHYLAMINE OF THE GLYCINE
DECARBOXYLASE COMPLEX FROM PEA THE H-PROTEIN PROVIDES
THE ATTACHMENT SITE FOR THE LIPOIC ACID VIA AN AMIDE
LINKAGE TO THE EPSILON-AMINO GROUP OF A LYS63.
SEQUENCE
REFERENCE
DATABASE: SWISS-PROT
ENTRY_NAME: GCSH_PEA
REFERENCE: MACHEREL D., LEBRUN M.,GAGNON J., NEUBURGER
M., DOUCE R. BIOCHEM J. 268:783-789(1990) KIM Y., OLIVER
D.J J. BIOL. CHEM. 265: 848-853(1990).
OSS
63
2
OSS
OSS
132
A
HOH
1
3
HOH
HOH
133
A
HOH
2
3
HOH
HOH
134
A
HOH
3
3
HOH
HOH
135
A
HOH
4
3
HOH
HOH
136
A
HOH
5
3
HOH
HOH
137
A
HOH
6
3
HOH
HOH
138
A
HOH
7
3
HOH
HOH
139
A
HOH
8
3
HOH
HOH
140
A
HOH
9
3
HOH
HOH
141
A
HOH
10
3
HOH
HOH
142
A
HOH
11
3
HOH
HOH
143
A
HOH
12
3
HOH
HOH
144
A
HOH
13
3
HOH
HOH
145
A
HOH
14
3
HOH
HOH
146
A
HOH
15
3
HOH
HOH
147
A
HOH
16
3
HOH
HOH
148
A
HOH
17
3
HOH
HOH
149
A
HOH
18
3
HOH
HOH
150
A
HOH
19
3
HOH
HOH
151
A
HOH
20
3
HOH
HOH
152
A
HOH
21
3
HOH
HOH
153
A
HOH
22
3
HOH
HOH
154
A
HOH
23
3
HOH
HOH
155
A
HOH
24
3
HOH
HOH
156
A
HOH
25
3
HOH
HOH
157
A
HOH
26
3
HOH
HOH
158
A
HOH
27
3
HOH
HOH
159
A
HOH
28
3
HOH
HOH
160
A
HOH
29
3
HOH
HOH
161
A
HOH
30
3
HOH
HOH
162
A
HOH
31
3
HOH
HOH
163
A
HOH
32
3
HOH
HOH
164
A
HOH
33
3
HOH
HOH
165
A
HOH
34
3
HOH
HOH
166
A
HOH
35
3
HOH
HOH
167
A
HOH
36
3
HOH
HOH
168
A
HOH
37
3
HOH
HOH
169
A
HOH
38
3
HOH
HOH
170
A
HOH
39
3
HOH
HOH
171
A
HOH
40
3
HOH
HOH
172
A
HOH
41
3
HOH
HOH
173
A
HOH
42
3
HOH
HOH
174
A
HOH
43
3
HOH
HOH
175
A
HOH
44
3
HOH
HOH
176
A
HOH
45
3
HOH
HOH
177
A
HOH
46
3
HOH
HOH
178
A
HOH
47
3
HOH
HOH
179
A
HOH
48
3
HOH
HOH
180
A
HOH
49
3
HOH
HOH
181
A
HOH
50
3
HOH
HOH
182
A
HOH
51
3
HOH
HOH
183
A
HOH
52
3
HOH
HOH
184
A
HOH
53
3
HOH
HOH
185
A
HOH
54
3
HOH
HOH
186
A
HOH
55
3
HOH
HOH
187
A
HOH
56
3
HOH
HOH
188
A
HOH
57
3
HOH
HOH
189
A
HOH
58
3
HOH
HOH
190
A
HOH
59
3
HOH
HOH
191
A
HOH
60
3
HOH
HOH
192
A
HOH
61
3
HOH
HOH
193
A
HOH
62
3
HOH
HOH
194
A
HOH
63
3
HOH
HOH
195
A
HOH
64
3
HOH
HOH
196
A
HOH
65
3
HOH
HOH
197
A
HOH
66
3
HOH
HOH
198
A
HOH
67
3
HOH
HOH
199
A
HOH
68
3
HOH
HOH
200
A
HOH
69
3
HOH
HOH
201
A
HOH
70
3
HOH
HOH
202
A
HOH
71
3
HOH
HOH
203
A
HOH
72
3
HOH
HOH
204
A
HOH
73
3
HOH
HOH
205
A
HOH
74
3
HOH
HOH
206
A
HOH
75
3
HOH
HOH
207
A
HOH
76
3
HOH
HOH
208
A
HOH
77
3
HOH
HOH
209
A
HOH
78
3
HOH
HOH
210
A
HOH
79
3
HOH
HOH
211
A
HOH
80
3
HOH
HOH
212
A
HOH
81
3
HOH
HOH
213
A
HOH
82
3
HOH
HOH
214
A
HOH
83
3
HOH
HOH
215
A
HOH
84
3
HOH
HOH
216
A
HOH
85
3
HOH
HOH
217
A
HOH
86
3
HOH
HOH
218
A
HOH
87
3
HOH
HOH
219
A
HOH
88
3
HOH
HOH
220
A
HOH
89
3
HOH
HOH
221
A
HOH
90
3
HOH
HOH
222
A
HOH
91
3
HOH
HOH
223
A
HOH
92
3
HOH
HOH
224
A
HOH
93
3
HOH
HOH
225
A
HOH
94
3
HOH
HOH
226
A
HOH
95
3
HOH
HOH
227
A
HOH
96
3
HOH
HOH
228
A
HOH
97
3
HOH
HOH
229
A
HOH
98
3
HOH
HOH
230
A
HOH
99
3
HOH
HOH
231
A
HOH
100
3
HOH
HOH
232
A
HOH
101
3
HOH
HOH
233
A
HOH
102
3
HOH
HOH
234
A
HOH
103
3
HOH
HOH
235
A
HOH
104
3
HOH
HOH
236
A
HOH
105
3
HOH
HOH
237
A
HOH
106
3
HOH
HOH
238
A
HOH
107
3
HOH
HOH
239
A
HOH
108
3
HOH
HOH
240
A
HOH
109
3
HOH
HOH
241
A
HOH
110
3
HOH
HOH
242
A
HOH
111
3
HOH
HOH
243
A
HOH
112
3
HOH
HOH
244
A
HOH
113
3
HOH
HOH
245
A
HOH
114
3
HOH
HOH
246
A
HOH
115
3
HOH
HOH
247
A
HOH
116
3
HOH
HOH
248
A
HOH
117
3
HOH
HOH
249
A
HOH
118
3
HOH
HOH
250
A
HOH
119
3
HOH
HOH
251
A
HOH
120
3
HOH
HOH
252
A
HOH
121
3
HOH
HOH
253
A
HOH
122
3
HOH
HOH
254
A
HOH
123
3
HOH
HOH
255
A
HOH
124
3
HOH
HOH
256
A
HOH
125
3
HOH
HOH
257
A
HOH
126
3
HOH
HOH
258
A
HOH
127
3
HOH
HOH
259
A
HOH
128
3
HOH
HOH
260
A
HOH
129
3
HOH
HOH
261
A
HOH
130
3
HOH
HOH
262
A
HOH
131
3
HOH
HOH
263
A
HOH
132
3
HOH
HOH
264
A
HOH
133
3
HOH
HOH
265
A
HOH
134
3
HOH
HOH
266
A
HOH
135
3
HOH
HOH
267
A
HOH
136
3
HOH
HOH
268
A
HOH
137
3
HOH
HOH
269
A
HOH
138
3
HOH
HOH
270
A
HOH
139
3
HOH
HOH
271
A
HOH
140
3
HOH
HOH
272
A
HOH
141
3
HOH
HOH
273
A
HOH
142
3
HOH
HOH
274
A
HOH
143
3
HOH
HOH
275
A
HOH
144
3
HOH
HOH
276
A
HOH
145
3
HOH
HOH
277
A
SER
1
n
1
SER
1
A
ASN
2
n
2
ASN
2
A
VAL
3
n
3
VAL
3
A
LEU
4
n
4
LEU
4
A
ASP
5
n
5
ASP
5
A
GLY
6
n
6
GLY
6
A
LEU
7
n
7
LEU
7
A
LYS
8
n
8
LYS
8
A
TYR
9
n
9
TYR
9
A
ALA
10
n
10
ALA
10
A
PRO
11
n
11
PRO
11
A
SER
12
n
12
SER
12
A
HIS
13
n
13
HIS
13
A
GLU
14
n
14
GLU
14
A
TRP
15
n
15
TRP
15
A
VAL
16
n
16
VAL
16
A
LYS
17
n
17
LYS
17
A
HIS
18
n
18
HIS
18
A
GLU
19
n
19
GLU
19
A
GLY
20
n
20
GLY
20
A
SER
21
n
21
SER
21
A
VAL
22
n
22
VAL
22
A
ALA
23
n
23
ALA
23
A
THR
24
n
24
THR
24
A
ILE
25
n
25
ILE
25
A
GLY
26
n
26
GLY
26
A
ILE
27
n
27
ILE
27
A
THR
28
n
28
THR
28
A
ASP
29
n
29
ASP
29
A
HIS
30
n
30
HIS
30
A
ALA
31
n
31
ALA
31
A
GLN
32
n
32
GLN
32
A
ASP
33
n
33
ASP
33
A
HIS
34
n
34
HIS
34
A
LEU
35
n
35
LEU
35
A
GLY
36
n
36
GLY
36
A
GLU
37
n
37
GLU
37
A
VAL
38
n
38
VAL
38
A
VAL
39
n
39
VAL
39
A
PHE
40
n
40
PHE
40
A
VAL
41
n
41
VAL
41
A
GLU
42
n
42
GLU
42
A
LEU
43
n
43
LEU
43
A
PRO
44
n
44
PRO
44
A
GLU
45
n
45
GLU
45
A
PRO
46
n
46
PRO
46
A
GLY
47
n
47
GLY
47
A
VAL
48
n
48
VAL
48
A
SER
49
n
49
SER
49
A
VAL
50
n
50
VAL
50
A
THR
51
n
51
THR
51
A
LYS
52
n
52
LYS
52
A
GLY
53
n
53
GLY
53
A
LYS
54
n
54
LYS
54
A
GLY
55
n
55
GLY
55
A
PHE
56
n
56
PHE
56
A
GLY
57
n
57
GLY
57
A
ALA
58
n
58
ALA
58
A
VAL
59
n
59
VAL
59
A
GLU
60
n
60
GLU
60
A
SER
61
n
61
SER
61
A
VAL
62
n
62
VAL
62
A
LYS
63
n
63
LYS
63
A
ALA
64
n
64
ALA
64
A
THR
65
n
65
THR
65
A
SER
66
n
66
SER
66
A
ASP
67
n
67
ASP
67
A
VAL
68
n
68
VAL
68
A
ASN
69
n
69
ASN
69
A
SER
70
n
70
SER
70
A
PRO
71
n
71
PRO
71
A
ILE
72
n
72
ILE
72
A
SER
73
n
73
SER
73
A
GLY
74
n
74
GLY
74
A
GLU
75
n
75
GLU
75
A
VAL
76
n
76
VAL
76
A
ILE
77
n
77
ILE
77
A
GLU
78
n
78
GLU
78
A
VAL
79
n
79
VAL
79
A
ASN
80
n
80
ASN
80
A
THR
81
n
81
THR
81
A
GLY
82
n
82
GLY
82
A
LEU
83
n
83
LEU
83
A
THR
84
n
84
THR
84
A
GLY
85
n
85
GLY
85
A
LYS
86
n
86
LYS
86
A
PRO
87
n
87
PRO
87
A
GLY
88
n
88
GLY
88
A
LEU
89
n
89
LEU
89
A
ILE
90
n
90
ILE
90
A
ASN
91
n
91
ASN
91
A
SER
92
n
92
SER
92
A
SER
93
n
93
SER
93
A
PRO
94
n
94
PRO
94
A
TYR
95
n
95
TYR
95
A
GLU
96
n
96
GLU
96
A
ASP
97
n
97
ASP
97
A
GLY
98
n
98
GLY
98
A
TRP
99
n
99
TRP
99
A
MET
100
n
100
MET
100
A
ILE
101
n
101
ILE
101
A
LYS
102
n
102
LYS
102
A
ILE
103
n
103
ILE
103
A
LYS
104
n
104
LYS
104
A
PRO
105
n
105
PRO
105
A
THR
106
n
106
THR
106
A
SER
107
n
107
SER
107
A
PRO
108
n
108
PRO
108
A
ASP
109
n
109
ASP
109
A
GLU
110
n
110
GLU
110
A
LEU
111
n
111
LEU
111
A
GLU
112
n
112
GLU
112
A
SER
113
n
113
SER
113
A
LEU
114
n
114
LEU
114
A
LEU
115
n
115
LEU
115
A
GLY
116
n
116
GLY
116
A
ALA
117
n
117
ALA
117
A
LYS
118
n
118
LYS
118
A
GLU
119
n
119
GLU
119
A
TYR
120
n
120
TYR
120
A
THR
121
n
121
THR
121
A
LYS
122
n
122
LYS
122
A
PHE
123
n
123
PHE
123
A
CYS
124
n
124
CYS
124
A
GLU
125
n
125
GLU
125
A
GLU
126
n
126
GLU
126
A
GLU
127
n
127
GLU
127
A
ASP
128
n
128
ASP
128
A
ALA
129
n
129
ALA
129
A
ALA
130
n
130
ALA
130
A
HIS
131
n
131
HIS
131
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
TRP
15
A
O
TRP
15
A
N
GLY
26
A
N
GLY
26
A
O
ALA
23
A
O
ALA
23
A
N
ILE
103
A
N
ILE
103
A
O
LYS
102
A
O
LYS
102
A
N
GLU
78
A
N
GLU
78
A
O
VAL
39
A
O
VAL
39
A
N
GLU
60
A
N
GLU
60
A
O
PHE
56
A
O
PHE
56
A
N
VAL
68
A
N
VAL
68
1
5.72
0.80
106.30
112.02
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
15
15
15
N
1
-8.25
1.30
127.00
118.75
A
A
A
CB
CG
CD1
TRP
TRP
TRP
15
15
15
N
1
-6.23
0.80
107.30
101.07
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
15
15
15
N
1
5.82
0.80
106.30
112.12
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
99
99
99
N
1
-5.84
0.80
107.30
101.46
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
99
99
99
N
1
-4.23
0.70
120.80
116.57
A
A
A
CB
CG
CD2
PHE
PHE
PHE
123
123
123
N
1
A
A
NE2
CD2
HIS
HIS
18
18
-0.071
0.011
1.373
1.302
N
1
A
A
NE2
CD2
HIS
HIS
30
30
-0.069
0.011
1.373
1.304
N
1
A
A
NE2
CD2
HIS
HIS
34
34
-0.068
0.011
1.373
1.305
N
1
A
HIS
13
76.30
43.90
1
A
LYS
86
-117.12
79.37
1
A
SER
93
-151.16
75.51
1
A
GLU
96
-129.31
-90.91
17.5
0.1850000
0.1850000
2.2
8.0
5457
90.0
1
2.
0.20
2.2
8.0
145
1342
17
0
1180
0.014
2.90
26.1
1HTP
5684
1
91.
model building
X-PLOR
refinement
X-PLOR
phasing
X-PLOR
H-PROTEIN (E.C.1.4.4.2) COMPLEXED WITH LIPOIC ACID CHARGED IN METHYLAMINE
REFINED STRUCTURES AT 2 ANGSTROMS AND 2.2 ANGSTROMS OF THE TWO FORMS OF THE H-PROTEIN, A LIPOAMIDE-CONTAINING PROTEIN OF THE GLYCINE DECARBOXYLASE COMPLEX
1
N
N
2
N
N
3
N
N
A
ASP
29
A
ASP
29
HELX_P
A
LEU
35
A
LEU
35
1
1
7
A
THR
81
A
THR
81
HELX_P
A
GLY
85
A
GLY
85
5
2
5
A
PRO
87
A
PRO
87
HELX_P
A
SER
92
A
SER
92
5
3
6
A
PRO
108
A
PRO
108
HELX_P
A
SER
113
A
SER
113
5
4
6
A
ALA
117
A
ALA
117
HELX_P
A
ASP
128
A
ASP
128
1
5
12
covale
1.323
A
LYS
63
A
NZ
LYS
63
1_555
A
OSS
132
B
C1
OSS
1_555
OXIDOREDUCTASES(ACTING ON CH-NH2 DONOR)
OXIDOREDUCTASES(ACTING ON CH-NH2 DONOR)
GCSH_PEA
UNP
1
1
P16048
MALRMWASSTANALKLSSSSRLHLSPTFSISRCFSNVLDGLKYAPSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEP
GVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTSPDELESLLGAKEYTKFCEE
EDAAH
35
165
1HTP
1
131
P16048
A
1
1
131
4
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
14
A
GLU
14
A
GLU
19
A
GLU
19
A
VAL
22
A
VAL
22
A
ILE
27
A
ILE
27
A
ILE
101
A
ILE
101
A
PRO
105
A
PRO
105
A
GLY
74
A
GLY
74
A
VAL
79
A
VAL
79
A
VAL
38
A
VAL
38
A
GLU
42
A
GLU
42
A
GLY
55
A
GLY
55
A
SER
61
A
SER
61
A
THR
65
A
THR
65
A
ASN
69
A
ASN
69
BINDING SITE FOR RESIDUE OSS A 132
Software
12
A
SER
12
A
SER
12
12
1_555
A
HIS
13
A
HIS
13
12
1_555
A
GLU
14
A
GLU
14
12
1_555
A
ALA
31
A
ALA
31
12
1_555
A
HIS
34
A
HIS
34
12
1_555
A
LEU
35
A
LEU
35
12
1_555
A
LYS
63
A
LYS
63
12
1_555
A
ALA
64
A
ALA
64
12
1_555
A
SER
66
A
SER
66
12
1_555
A
ASP
67
A
ASP
67
12
1_555
A
GLU
127
A
GLU
127
12
1_555
A
HOH
219
C
HOH
12
1_555
18
P 21 21 2