0.018382
0.000000
0.000000
0.000000
0.007632
0.000000
0.000000
0.000000
0.034305
0.00000
0.00000
0.00000
Hosaka, H.
Nakagawa, A.
Tanaka, I.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
54.400
131.020
29.150
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Structure
STRUE6
2005
0969-2126
5
1199
1208
10.1016/S0969-2126(97)00270-0
9331423
Ribosomal protein S7: a new RNA-binding motif with structural similarities to a DNA architectural factor.
1997
US
J.Struct.Biol.
JSBIEM
0803
1047-8477
120
112
Crystallization and Preliminary X-Ray Crystallographic Study of the Ribosomal Protein S7 from Bacillus Stearothermophilus
1997
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
293
1
COLLIMATING AND FOCUSING MIRRORS
CCD
1997-03
PRINCETON 2K
SI(111)
M
x-ray
1
0.90007
1.0
BM14
ESRF
0.90007
SYNCHROTRON
ESRF BEAMLINE BM14
18230.283
RIBOSOMAL PROTEIN S7
1
man
polymer
18.015
water
25
nat
water
no
yes
PRRGPVAKRDVLPDPIYNSKLVTRLINKI(MSE)IDGKKSKAQKILYTAFDIIRERTGKDP(MSE)EVFEQALKNV
(MSE)PVLEVRARRVGGANYQVPVEVRPDRRVSLGLRWLVQYARLRNEKT(MSE)EERLANEI(MSE)DAANNTGAAVKK
REDTHK(MSE)AEANKAFAHYRW
PRRGPVAKRDVLPDPIYNSKLVTRLINKIMIDGKKSKAQKILYTAFDIIRERTGKDPMEVFEQALKNVMPVLEVRARRVG
GANYQVPVEVRPDRRVSLGLRWLVQYARLRNEKTMEERLANEIMDAANNTGAAVKKREDTHKMAEANKAFAHYRW
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Geobacillus
Escherichia
sample
BL21
S7
1422
Geobacillus stearothermophilus
S7
562
Escherichia coli
BL21 (DE3) LYSS
PET-22B
PLASMID
BL21
1
2.9
57.
8.2
PROTEIN WAS CRYSTALLIZED FROM 0.1M NA HEPES BUFFER(PH8.2) WITH 4%(V/V) 2-PROPANOL AND 2.0M AMMONIUM SULFATE.
repository
Initial release
Version format compliance
Version format compliance
1
0
1998-01-28
1
1
2008-03-24
1
2
2011-07-13
Y
BNL
1997-08-08
REL
HOH
water
HOH
1
2
HOH
HOH
156
A
HOH
2
2
HOH
HOH
157
A
HOH
3
2
HOH
HOH
158
A
HOH
4
2
HOH
HOH
159
A
HOH
5
2
HOH
HOH
160
A
HOH
6
2
HOH
HOH
161
A
HOH
7
2
HOH
HOH
162
A
HOH
8
2
HOH
HOH
163
A
HOH
9
2
HOH
HOH
164
A
HOH
10
2
HOH
HOH
165
A
HOH
11
2
HOH
HOH
166
A
HOH
12
2
HOH
HOH
167
A
HOH
13
2
HOH
HOH
168
A
HOH
14
2
HOH
HOH
169
A
HOH
15
2
HOH
HOH
170
A
HOH
16
2
HOH
HOH
171
A
HOH
17
2
HOH
HOH
172
A
HOH
18
2
HOH
HOH
173
A
HOH
19
2
HOH
HOH
174
A
HOH
20
2
HOH
HOH
175
A
HOH
21
2
HOH
HOH
176
A
HOH
22
2
HOH
HOH
177
A
HOH
23
2
HOH
HOH
178
A
HOH
24
2
HOH
HOH
179
A
HOH
25
2
HOH
HOH
180
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
ARG
9
n
9
ARG
9
A
ASP
10
n
10
ASP
10
A
VAL
11
n
11
VAL
11
A
LEU
12
n
12
LEU
12
A
PRO
13
n
13
PRO
13
A
ASP
14
n
14
ASP
14
A
PRO
15
n
15
PRO
15
A
ILE
16
n
16
ILE
16
A
TYR
17
n
17
TYR
17
A
ASN
18
n
18
ASN
18
A
SER
19
n
19
SER
19
A
LYS
20
n
20
LYS
20
A
LEU
21
n
21
LEU
21
A
VAL
22
n
22
VAL
22
A
THR
23
n
23
THR
23
A
ARG
24
n
24
ARG
24
A
LEU
25
n
25
LEU
25
A
ILE
26
n
26
ILE
26
A
ASN
27
n
27
ASN
27
A
LYS
28
n
28
LYS
28
A
ILE
29
n
29
ILE
29
A
MSE
30
n
30
MSE
30
A
ILE
31
n
31
ILE
31
A
ASP
32
n
32
ASP
32
A
GLY
33
n
33
GLY
33
A
LYS
34
n
34
LYS
34
A
LYS
35
n
35
LYS
35
A
SER
36
n
36
SER
36
A
LYS
37
n
37
LYS
37
A
ALA
38
n
38
ALA
38
A
GLN
39
n
39
GLN
39
A
LYS
40
n
40
LYS
40
A
ILE
41
n
41
ILE
41
A
LEU
42
n
42
LEU
42
A
TYR
43
n
43
TYR
43
A
THR
44
n
44
THR
44
A
ALA
45
n
45
ALA
45
A
PHE
46
n
46
PHE
46
A
ASP
47
n
47
ASP
47
A
ILE
48
n
48
ILE
48
A
ILE
49
n
49
ILE
49
A
ARG
50
n
50
ARG
50
A
GLU
51
n
51
GLU
51
A
ARG
52
n
52
ARG
52
A
THR
53
n
53
THR
53
A
GLY
54
n
54
GLY
54
A
LYS
55
n
55
LYS
55
A
ASP
56
n
56
ASP
56
A
PRO
57
n
57
PRO
57
A
MSE
58
n
58
MSE
58
A
GLU
59
n
59
GLU
59
A
VAL
60
n
60
VAL
60
A
PHE
61
n
61
PHE
61
A
GLU
62
n
62
GLU
62
A
GLN
63
n
63
GLN
63
A
ALA
64
n
64
ALA
64
A
LEU
65
n
65
LEU
65
A
LYS
66
n
66
LYS
66
A
ASN
67
n
67
ASN
67
A
VAL
68
n
68
VAL
68
A
MSE
69
n
69
MSE
69
A
PRO
70
n
70
PRO
70
A
VAL
71
n
71
VAL
71
A
LEU
72
n
72
LEU
72
A
GLU
73
n
73
GLU
73
A
VAL
74
n
74
VAL
74
A
ARG
75
n
75
ARG
75
A
ALA
76
n
76
ALA
76
A
ARG
77
n
77
ARG
77
A
ARG
78
n
78
ARG
78
A
VAL
79
n
79
VAL
79
A
GLY
80
n
80
GLY
80
A
GLY
81
n
81
GLY
81
A
ALA
82
n
82
ALA
82
A
ASN
83
n
83
ASN
83
A
TYR
84
n
84
TYR
84
A
GLN
85
n
85
GLN
85
A
VAL
86
n
86
VAL
86
A
PRO
87
n
87
PRO
87
A
VAL
88
n
88
VAL
88
A
GLU
89
n
89
GLU
89
A
VAL
90
n
90
VAL
90
A
ARG
91
n
91
ARG
91
A
PRO
92
n
92
PRO
92
A
ASP
93
n
93
ASP
93
A
ARG
94
n
94
ARG
94
A
ARG
95
n
95
ARG
95
A
VAL
96
n
96
VAL
96
A
SER
97
n
97
SER
97
A
LEU
98
n
98
LEU
98
A
GLY
99
n
99
GLY
99
A
LEU
100
n
100
LEU
100
A
ARG
101
n
101
ARG
101
A
TRP
102
n
102
TRP
102
A
LEU
103
n
103
LEU
103
A
VAL
104
n
104
VAL
104
A
GLN
105
n
105
GLN
105
A
TYR
106
n
106
TYR
106
A
ALA
107
n
107
ALA
107
A
ARG
108
n
108
ARG
108
A
LEU
109
n
109
LEU
109
A
ARG
110
n
110
ARG
110
A
ASN
111
n
111
ASN
111
A
GLU
112
n
112
GLU
112
A
LYS
113
n
113
LYS
113
A
THR
114
n
114
THR
114
A
MSE
115
n
115
MSE
115
A
GLU
116
n
116
GLU
116
A
GLU
117
n
117
GLU
117
A
ARG
118
n
118
ARG
118
A
LEU
119
n
119
LEU
119
A
ALA
120
n
120
ALA
120
A
ASN
121
n
121
ASN
121
A
GLU
122
n
122
GLU
122
A
ILE
123
n
123
ILE
123
A
MSE
124
n
124
MSE
124
A
ASP
125
n
125
ASP
125
A
ALA
126
n
126
ALA
126
A
ALA
127
n
127
ALA
127
A
ASN
128
n
128
ASN
128
A
ASN
129
n
129
ASN
129
A
THR
130
n
130
THR
130
A
GLY
131
n
131
GLY
131
A
ALA
132
n
132
ALA
132
A
ALA
133
n
133
ALA
133
A
VAL
134
n
134
VAL
134
A
LYS
135
n
135
LYS
135
A
LYS
136
n
136
LYS
136
A
ARG
137
n
137
ARG
137
A
GLU
138
n
138
GLU
138
A
ASP
139
n
139
ASP
139
A
THR
140
n
140
THR
140
A
HIS
141
n
141
HIS
141
A
LYS
142
n
142
LYS
142
A
MSE
143
n
143
MSE
143
A
ALA
144
n
144
ALA
144
A
GLU
145
n
145
GLU
145
A
ALA
146
n
146
ALA
146
A
ASN
147
n
147
ASN
147
A
n
148
148
A
n
149
149
A
n
150
150
A
n
151
151
A
n
152
152
A
n
153
153
A
n
154
154
A
n
155
155
A
author_defined_assembly
1
monomeric
A
MSE
30
SELENOMETHIONINE
A
MSE
30
MET
A
MSE
58
SELENOMETHIONINE
A
MSE
58
MET
A
MSE
69
SELENOMETHIONINE
A
MSE
69
MET
A
MSE
115
SELENOMETHIONINE
A
MSE
115
MET
A
MSE
124
SELENOMETHIONINE
A
MSE
124
MET
A
MSE
143
SELENOMETHIONINE
A
MSE
143
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLU
73
A
O
GLU
73
A
N
VAL
88
A
N
VAL
88
1
A
PRO
1
A
PRO
1
1
Y
1
A
ARG
2
A
ARG
2
1
Y
1
A
ARG
3
A
ARG
3
1
Y
1
A
GLY
4
A
GLY
4
1
Y
1
A
PRO
5
A
PRO
5
1
Y
1
A
VAL
6
A
VAL
6
1
Y
1
A
ALA
7
A
ALA
7
1
Y
1
A
LYS
8
A
LYS
8
1
Y
1
A
LYS
148
A
LYS
148
1
Y
1
A
ALA
149
A
ALA
149
1
Y
1
A
PHE
150
A
PHE
150
1
Y
1
A
ALA
151
A
ALA
151
1
Y
1
A
HIS
152
A
HIS
152
1
Y
1
A
TYR
153
A
TYR
153
1
Y
1
A
ARG
154
A
ARG
154
1
Y
1
A
TRP
155
A
TRP
155
1
Y
1
A
A
O
O
HOH
HOH
159
165
2.09
1
A
ARG
77
-154.70
88.71
1
A
GLN
85
-55.13
103.38
1
A
ARG
110
-56.29
178.80
33.4
REFMAC (G.N.MURSHUDOV ET AL.) WAS ALSO USED DURING THE REFINEMENT CYCLE. PARAMETERS OF SE-MET WAS DERIVED FROM THOSE OF METHIONINE.
0.2700000
0.010
0.2160000
0.2160000
2.5
8.0
715
7305
9.8
98.0
RANDOM
1
RESTRAINED
THROUGHOUT
0.0
MAD WITH SE-MET MUTANT
0.37
0.29
5.0
0.36
0.37
2.5
8.0
25
1145
0
0
1120
0.020
2.0
25.4
1.12
8.23
1.50
10.57
2.00
11.45
2.00
16.27
2.50
0.3390000
0.038
0.3530000
2.61
81
769
8
9.5
93.3
33.3
2.5
30.0
1HUS
7586
18.7
0.0480000
1
20.3
2.8
97.6
0.1380000
2.50
2.54
5.8
2.2
92.9
phasing
SHARP
model building
X-PLOR
3.851
refinement
X-PLOR
3.851
data reduction
DENZO
data scaling
SCALEPACK
phasing
X-PLOR
3.851
RIBOSOMAL PROTEIN S7
RIBOSOMAL PROTEIN S7
1
N
N
2
N
N
A
LYS
20
A
LYS
20
HELX_P
A
LYS
28
A
LYS
28
1
1
9
A
LYS
35
A
LYS
35
HELX_P
A
THR
53
A
THR
53
1
2
19
A
PRO
57
A
PRO
57
HELX_P
A
ASN
67
A
ASN
67
5
3
11
A
PRO
92
A
PRO
92
HELX_P
A
LEU
109
A
LEU
109
1
4
18
A
GLU
117
A
GLU
117
HELX_P
A
ASN
128
A
ASN
128
1
5
12
A
ALA
132
A
ALA
132
HELX_P
A
GLU
145
A
GLU
145
1
6
14
covale
1.331
A
MSE
30
A
N
MSE
30
1_555
A
ILE
29
A
C
ILE
29
1_555
covale
1.332
A
MSE
30
A
C
MSE
30
1_555
A
ILE
31
A
N
ILE
31
1_555
covale
1.305
A
MSE
58
A
N
MSE
58
1_555
A
PRO
57
A
C
PRO
57
1_555
covale
1.324
A
MSE
58
A
C
MSE
58
1_555
A
GLU
59
A
N
GLU
59
1_555
covale
1.320
A
MSE
69
A
N
MSE
69
1_555
A
VAL
68
A
C
VAL
68
1_555
covale
1.349
A
MSE
69
A
C
MSE
69
1_555
A
PRO
70
A
N
PRO
70
1_555
covale
1.336
A
MSE
115
A
N
MSE
115
1_555
A
THR
114
A
C
THR
114
1_555
covale
1.331
A
MSE
115
A
C
MSE
115
1_555
A
GLU
116
A
N
GLU
116
1_555
covale
1.320
A
MSE
124
A
N
MSE
124
1_555
A
ILE
123
A
C
ILE
123
1_555
covale
1.330
A
MSE
124
A
C
MSE
124
1_555
A
ASP
125
A
N
ASP
125
1_555
covale
1.326
A
MSE
143
A
N
MSE
143
1_555
A
LYS
142
A
C
LYS
142
1_555
covale
1.318
A
MSE
143
A
C
MSE
143
1_555
A
ALA
144
A
N
ALA
144
1_555
RIBOSOMAL PROTEIN
RIBOSOMAL PROTEIN, RNA-BINDING PROTEIN, DECODING CENTER
RS7_BACST
UNP
1
1
P22744
PRRGPVAKRDVLPDPIYNSKLVTRLINKIMIDGKKSKAQKILYTAFDIIRERTGKDPMEVFEQALKNVMPVLEVRARRVG
GANYQVPVEVRPDRRVSLGLRWLVQYARLRNEKTMEERLANEIMDAANNTGAAVKKREDTHKMAEANKAFAHYRW
1
155
1HUS
1
155
P22744
A
1
1
155
1
MET
MODIFIED RESIDUE
MSE
30
1HUS
A
P22744
UNP
30
30
1
MET
MODIFIED RESIDUE
MSE
58
1HUS
A
P22744
UNP
58
58
1
MET
MODIFIED RESIDUE
MSE
69
1HUS
A
P22744
UNP
69
69
1
MET
MODIFIED RESIDUE
MSE
115
1HUS
A
P22744
UNP
115
115
1
MET
MODIFIED RESIDUE
MSE
124
1HUS
A
P22744
UNP
124
124
1
MET
MODIFIED RESIDUE
MSE
143
1HUS
A
P22744
UNP
143
143
2
anti-parallel
A
LEU
72
A
LEU
72
A
ARG
75
A
ARG
75
A
VAL
86
A
VAL
86
A
GLU
89
A
GLU
89
18
P 21 21 2