0.017693
0.000000
0.000000
0.000000
0.012913
0.000000
0.000000
0.000000
0.010048
0.00000
0.00000
0.00000
Padmanabhan, K.
Padmanabhan, K.P.
Ferrara, J.D.
Sadler, J.E.
Tulinsky, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
56.520
77.440
99.520
C21 H31 Cl N6 O3
450.962
D-phenylalanyl-N-[(3S)-6-carbamimidamido-1-chloro-2-oxohexan-3-yl]-L-prolinamide
d-Phe-Pro-Arg chloromethylketone (PPACK)
peptide-like
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
268
17651
17654
8102368
The structure of alpha-thrombin inhibited by a 15-mer single-stranded DNA aptamer.
1993
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
IMAGE PLATE
RIGAKU RAXIS II
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
4743.051
DNA 5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3'
1
syn
polymer
4096.534
ALPHA-Thrombin light chain
3.4.21.5
RESIDUES 328-363
1
nat
polymer
29780.219
ALPHA-Thrombin heavy chain
3.4.21.5
RESIDUES 364-622
1
nat
polymer
450.962
D-phenylalanyl-N-[(3S)-6-carbamimidamido-1-chloro-2-oxohexan-3-yl]-L-prolinamide
1
syn
non-polymer
18.015
water
130
nat
water
COAGULATION FACTOR II, THROMBIN
COAGULATION FACTOR II, THROMBIN
E.C.3.4.21.5
E.C.3.4.21.5
no
no
(DG)(DG)(DT)(DT)(DG)(DG)(DT)(DG)(DT)(DG)(DG)(DT)(DT)(DG)(DG)
GGTTGGTGTGGTTGG
D
polydeoxyribonucleotide
no
no
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
L
polypeptide(L)
no
no
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
H
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
9606
Homo sapiens
PLASMA
BLOOD
human
Homo
sample
9606
Homo sapiens
PLASMA
BLOOD
1
2.78
55.72
repository
Initial release
Version format compliance
Version format compliance
Atomic model
Database references
Derived calculations
Non-polymer description
Structure summary
Other
1
0
1994-06-22
1
1
2008-05-22
1
2
2011-07-13
1
3
2011-07-27
1
4
2013-02-27
BNL
Y
NDB
1993-05-27
REL
0G7
D-phenylalanyl-N-[(3S)-6-carbamimidamido-1-chloro-2-oxohexan-3-yl]-L-prolinamide
HOH
water
CHYMOTRYPSIN NUMBERING SYSTEM IS USED BASED ON THE TOPOLOGICAL ALIGNMENT WITH THE
STRUCTURE OF CHYMOTRYPSIN (W.BODE ET AL., 1989, EMBO J. 8, 3467-3475).
THROMBIN IS CLEAVED BETWEEN RESIDUES 15 AND 16. CHAIN
INDICATOR *L* IS USED FOR RESIDUES 1H - 15 AND CHAIN
INDICATOR *H* IS USED FOR RESIDUES 16 - 247. CHAIN
CHAIN INDICATOR *D* IS USED FOR THE OLIGONUCLEOTIDE.
Inhibitor
D-Phe-Pro-Arg chloromethylketone (PPACK)
Peptide-like
DPN
1
4
0G7
0G7
1
H
HOH
504
5
HOH
HOH
504
D
HOH
512
5
HOH
HOH
512
D
HOH
514
5
HOH
HOH
514
D
HOH
526
5
HOH
HOH
526
D
HOH
544
5
HOH
HOH
544
D
HOH
574
5
HOH
HOH
574
D
HOH
578
5
HOH
HOH
578
D
HOH
583
5
HOH
HOH
583
D
HOH
599
5
HOH
HOH
599
D
HOH
602
5
HOH
HOH
602
D
HOH
603
5
HOH
HOH
603
D
HOH
615
5
HOH
HOH
615
D
HOH
618
5
HOH
HOH
618
D
HOH
621
5
HOH
HOH
621
D
HOH
623
5
HOH
HOH
623
D
HOH
624
5
HOH
HOH
624
D
HOH
630
5
HOH
HOH
630
D
HOH
632
5
HOH
HOH
632
D
HOH
634
5
HOH
HOH
634
D
HOH
637
5
HOH
HOH
637
D
HOH
644
5
HOH
HOH
644
D
HOH
645
5
HOH
HOH
645
D
HOH
648
5
HOH
HOH
648
D
HOH
652
5
HOH
HOH
652
D
HOH
677
5
HOH
HOH
677
D
HOH
501
5
HOH
HOH
501
L
HOH
519
5
HOH
HOH
519
L
HOH
521
5
HOH
HOH
521
L
HOH
540
5
HOH
HOH
540
L
HOH
543
5
HOH
HOH
543
L
HOH
582
5
HOH
HOH
582
L
HOH
597
5
HOH
HOH
597
L
HOH
598
5
HOH
HOH
598
L
HOH
640
5
HOH
HOH
640
L
HOH
651
5
HOH
HOH
651
L
HOH
666
5
HOH
HOH
666
L
HOH
671
5
HOH
HOH
671
L
HOH
678
5
HOH
HOH
678
L
HOH
681
5
HOH
HOH
681
L
HOH
686
5
HOH
HOH
686
L
HOH
502
5
HOH
HOH
502
H
HOH
503
5
HOH
HOH
503
H
HOH
505
5
HOH
HOH
505
H
HOH
506
5
HOH
HOH
506
H
HOH
508
5
HOH
HOH
508
H
HOH
509
5
HOH
HOH
509
H
HOH
510
5
HOH
HOH
510
H
HOH
511
5
HOH
HOH
511
H
HOH
516
5
HOH
HOH
516
H
HOH
517
5
HOH
HOH
517
H
HOH
518
5
HOH
HOH
518
H
HOH
523
5
HOH
HOH
523
H
HOH
525
5
HOH
HOH
525
H
HOH
528
5
HOH
HOH
528
H
HOH
529
5
HOH
HOH
529
H
HOH
531
5
HOH
HOH
531
H
HOH
532
5
HOH
HOH
532
H
HOH
533
5
HOH
HOH
533
H
HOH
536
5
HOH
HOH
536
H
HOH
538
5
HOH
HOH
538
H
HOH
539
5
HOH
HOH
539
H
HOH
541
5
HOH
HOH
541
H
HOH
542
5
HOH
HOH
542
H
HOH
553
5
HOH
HOH
553
H
HOH
554
5
HOH
HOH
554
H
HOH
555
5
HOH
HOH
555
H
HOH
556
5
HOH
HOH
556
H
HOH
558
5
HOH
HOH
558
H
HOH
560
5
HOH
HOH
560
H
HOH
561
5
HOH
HOH
561
H
HOH
562
5
HOH
HOH
562
H
HOH
563
5
HOH
HOH
563
H
HOH
565
5
HOH
HOH
565
H
HOH
566
5
HOH
HOH
566
H
HOH
570
5
HOH
HOH
570
H
HOH
573
5
HOH
HOH
573
H
HOH
575
5
HOH
HOH
575
H
HOH
579
5
HOH
HOH
579
H
HOH
581
5
HOH
HOH
581
H
HOH
586
5
HOH
HOH
586
H
HOH
589
5
HOH
HOH
589
H
HOH
592
5
HOH
HOH
592
H
HOH
594
5
HOH
HOH
594
H
HOH
595
5
HOH
HOH
595
H
HOH
596
5
HOH
HOH
596
H
HOH
600
5
HOH
HOH
600
H
HOH
605
5
HOH
HOH
605
H
HOH
611
5
HOH
HOH
611
H
HOH
612
5
HOH
HOH
612
H
HOH
613
5
HOH
HOH
613
H
HOH
616
5
HOH
HOH
616
H
HOH
617
5
HOH
HOH
617
H
HOH
619
5
HOH
HOH
619
H
HOH
620
5
HOH
HOH
620
H
HOH
622
5
HOH
HOH
622
H
HOH
625
5
HOH
HOH
625
H
HOH
626
5
HOH
HOH
626
H
HOH
627
5
HOH
HOH
627
H
HOH
629
5
HOH
HOH
629
H
HOH
631
5
HOH
HOH
631
H
HOH
633
5
HOH
HOH
633
H
HOH
635
5
HOH
HOH
635
H
HOH
638
5
HOH
HOH
638
H
HOH
639
5
HOH
HOH
639
H
HOH
641
5
HOH
HOH
641
H
HOH
643
5
HOH
HOH
643
H
HOH
646
5
HOH
HOH
646
H
HOH
650
5
HOH
HOH
650
H
HOH
653
5
HOH
HOH
653
H
HOH
654
5
HOH
HOH
654
H
HOH
655
5
HOH
HOH
655
H
HOH
656
5
HOH
HOH
656
H
HOH
657
5
HOH
HOH
657
H
HOH
658
5
HOH
HOH
658
H
HOH
662
5
HOH
HOH
662
H
HOH
663
5
HOH
HOH
663
H
HOH
664
5
HOH
HOH
664
H
HOH
665
5
HOH
HOH
665
H
HOH
667
5
HOH
HOH
667
H
HOH
668
5
HOH
HOH
668
H
HOH
669
5
HOH
HOH
669
H
HOH
670
5
HOH
HOH
670
H
HOH
672
5
HOH
HOH
672
H
HOH
673
5
HOH
HOH
673
H
HOH
674
5
HOH
HOH
674
H
HOH
676
5
HOH
HOH
676
H
HOH
679
5
HOH
HOH
679
H
HOH
680
5
HOH
HOH
680
H
HOH
684
5
HOH
HOH
684
H
HOH
685
5
HOH
HOH
685
H
G
401
n
1
DG
401
D
G
402
n
2
DG
402
D
T
403
n
3
DT
403
D
T
404
n
4
DT
404
D
G
405
n
5
DG
405
D
G
406
n
6
DG
406
D
T
407
n
7
DT
407
D
G
408
n
8
DG
408
D
T
409
n
9
DT
409
D
G
410
n
10
DG
410
D
G
411
n
11
DG
411
D
T
412
n
12
DT
412
D
T
413
n
13
DT
413
D
G
414
n
14
DG
414
D
G
415
n
15
DG
415
D
THR
1
n
1
H
THR
1
L
PHE
1
n
2
G
PHE
1
L
GLY
1
n
3
F
GLY
1
L
SER
1
n
4
E
SER
1
L
GLY
1
n
5
D
GLY
1
L
GLU
1
n
6
C
GLU
1
L
ALA
1
n
7
B
ALA
1
L
ASP
1
n
8
A
ASP
1
L
CYS
1
n
9
CYS
1
L
GLY
2
n
10
GLY
2
L
LEU
3
n
11
LEU
3
L
ARG
4
n
12
ARG
4
L
PRO
5
n
13
PRO
5
L
LEU
6
n
14
LEU
6
L
PHE
7
n
15
PHE
7
L
GLU
8
n
16
GLU
8
L
LYS
9
n
17
LYS
9
L
LYS
10
n
18
LYS
10
L
SER
11
n
19
SER
11
L
LEU
12
n
20
LEU
12
L
GLU
13
n
21
GLU
13
L
ASP
14
n
22
ASP
14
L
LYS
14
n
23
A
LYS
14
L
THR
14
n
24
B
THR
14
L
GLU
14
n
25
C
GLU
14
L
ARG
14
n
26
D
ARG
14
L
GLU
14
n
27
E
GLU
14
L
LEU
14
n
28
F
LEU
14
L
LEU
14
n
29
G
LEU
14
L
GLU
14
n
30
H
GLU
14
L
SER
14
n
31
I
SER
14
L
TYR
14
n
32
J
TYR
14
L
ILE
14
n
33
K
ILE
14
L
ASP
14
n
34
L
ASP
14
L
GLY
14
n
35
M
GLY
14
L
ARG
15
n
36
ARG
15
L
ILE
16
n
1
ILE
16
H
VAL
17
n
2
VAL
17
H
GLU
18
n
3
GLU
18
H
GLY
19
n
4
GLY
19
H
SER
20
n
5
SER
20
H
ASP
21
n
6
ASP
21
H
ALA
22
n
7
ALA
22
H
GLU
23
n
8
GLU
23
H
ILE
24
n
9
ILE
24
H
GLY
25
n
10
GLY
25
H
MET
26
n
11
MET
26
H
SER
27
n
12
SER
27
H
PRO
28
n
13
PRO
28
H
TRP
29
n
14
TRP
29
H
GLN
30
n
15
GLN
30
H
VAL
31
n
16
VAL
31
H
MET
32
n
17
MET
32
H
LEU
33
n
18
LEU
33
H
PHE
34
n
19
PHE
34
H
ARG
35
n
20
ARG
35
H
LYS
36
n
21
LYS
36
H
SER
36
n
22
A
SER
36
H
PRO
37
n
23
PRO
37
H
GLN
38
n
24
GLN
38
H
GLU
39
n
25
GLU
39
H
LEU
40
n
26
LEU
40
H
LEU
41
n
27
LEU
41
H
CYS
42
n
28
CYS
42
H
GLY
43
n
29
GLY
43
H
ALA
44
n
30
ALA
44
H
SER
45
n
31
SER
45
H
LEU
46
n
32
LEU
46
H
ILE
47
n
33
ILE
47
H
SER
48
n
34
SER
48
H
ASP
49
n
35
ASP
49
H
ARG
50
n
36
ARG
50
H
TRP
51
n
37
TRP
51
H
VAL
52
n
38
VAL
52
H
LEU
53
n
39
LEU
53
H
THR
54
n
40
THR
54
H
ALA
55
n
41
ALA
55
H
ALA
56
n
42
ALA
56
H
HIS
57
n
43
HIS
57
H
CYS
58
n
44
CYS
58
H
LEU
59
n
45
LEU
59
H
LEU
60
n
46
LEU
60
H
TYR
60
n
47
A
TYR
60
H
PRO
60
n
48
B
PRO
60
H
PRO
60
n
49
C
PRO
60
H
TRP
60
n
50
D
TRP
60
H
ASP
60
n
51
E
ASP
60
H
LYS
60
n
52
F
LYS
60
H
ASN
60
n
53
G
ASN
60
H
PHE
60
n
54
H
PHE
60
H
THR
60
n
55
I
THR
60
H
GLU
61
n
56
GLU
61
H
ASN
62
n
57
ASN
62
H
ASP
63
n
58
ASP
63
H
LEU
64
n
59
LEU
64
H
LEU
65
n
60
LEU
65
H
VAL
66
n
61
VAL
66
H
ARG
67
n
62
ARG
67
H
ILE
68
n
63
ILE
68
H
GLY
69
n
64
GLY
69
H
LYS
70
n
65
LYS
70
H
HIS
71
n
66
HIS
71
H
SER
72
n
67
SER
72
H
ARG
73
n
68
ARG
73
H
THR
74
n
69
THR
74
H
ARG
75
n
70
ARG
75
H
TYR
76
n
71
TYR
76
H
GLU
77
n
72
GLU
77
H
ARG
77
n
73
A
ARG
77
H
ASN
78
n
74
ASN
78
H
ILE
79
n
75
ILE
79
H
GLU
80
n
76
GLU
80
H
LYS
81
n
77
LYS
81
H
ILE
82
n
78
ILE
82
H
SER
83
n
79
SER
83
H
MET
84
n
80
MET
84
H
LEU
85
n
81
LEU
85
H
GLU
86
n
82
GLU
86
H
LYS
87
n
83
LYS
87
H
ILE
88
n
84
ILE
88
H
TYR
89
n
85
TYR
89
H
ILE
90
n
86
ILE
90
H
HIS
91
n
87
HIS
91
H
PRO
92
n
88
PRO
92
H
ARG
93
n
89
ARG
93
H
TYR
94
n
90
TYR
94
H
ASN
95
n
91
ASN
95
H
TRP
96
n
92
TRP
96
H
ARG
97
n
93
ARG
97
H
GLU
97
n
94
A
GLU
97
H
ASN
98
n
95
ASN
98
H
LEU
99
n
96
LEU
99
H
ASP
100
n
97
ASP
100
H
ARG
101
n
98
ARG
101
H
ASP
102
n
99
ASP
102
H
ILE
103
n
100
ILE
103
H
ALA
104
n
101
ALA
104
H
LEU
105
n
102
LEU
105
H
MET
106
n
103
MET
106
H
LYS
107
n
104
LYS
107
H
LEU
108
n
105
LEU
108
H
LYS
109
n
106
LYS
109
H
LYS
110
n
107
LYS
110
H
PRO
111
n
108
PRO
111
H
VAL
112
n
109
VAL
112
H
ALA
113
n
110
ALA
113
H
PHE
114
n
111
PHE
114
H
SER
115
n
112
SER
115
H
ASP
116
n
113
ASP
116
H
TYR
117
n
114
TYR
117
H
ILE
118
n
115
ILE
118
H
HIS
119
n
116
HIS
119
H
PRO
120
n
117
PRO
120
H
VAL
121
n
118
VAL
121
H
CYS
122
n
119
CYS
122
H
LEU
123
n
120
LEU
123
H
PRO
124
n
121
PRO
124
H
ASP
125
n
122
ASP
125
H
ARG
126
n
123
ARG
126
H
GLU
127
n
124
GLU
127
H
THR
128
n
125
THR
128
H
ALA
129
n
126
ALA
129
H
ALA
129
n
127
A
ALA
129
H
SER
129
n
128
B
SER
129
H
LEU
129
n
129
C
LEU
129
H
LEU
130
n
130
LEU
130
H
GLN
131
n
131
GLN
131
H
ALA
132
n
132
ALA
132
H
GLY
133
n
133
GLY
133
H
TYR
134
n
134
TYR
134
H
LYS
135
n
135
LYS
135
H
GLY
136
n
136
GLY
136
H
ARG
137
n
137
ARG
137
H
VAL
138
n
138
VAL
138
H
THR
139
n
139
THR
139
H
GLY
140
n
140
GLY
140
H
TRP
141
n
141
TRP
141
H
GLY
142
n
142
GLY
142
H
ASN
143
n
143
ASN
143
H
LEU
144
n
144
LEU
144
H
LYS
145
n
145
LYS
145
H
GLU
146
n
146
GLU
146
H
THR
147
n
147
THR
147
H
TRP
148
n
148
TRP
148
H
n
149
A
148
H
n
150
B
148
H
n
151
C
148
H
n
152
D
148
H
n
153
E
148
H
n
154
F
148
H
GLY
150
n
155
GLY
150
H
GLN
151
n
156
GLN
151
H
PRO
152
n
157
PRO
152
H
SER
153
n
158
SER
153
H
VAL
154
n
159
VAL
154
H
LEU
155
n
160
LEU
155
H
GLN
156
n
161
GLN
156
H
VAL
157
n
162
VAL
157
H
VAL
158
n
163
VAL
158
H
ASN
159
n
164
ASN
159
H
LEU
160
n
165
LEU
160
H
PRO
161
n
166
PRO
161
H
ILE
162
n
167
ILE
162
H
VAL
163
n
168
VAL
163
H
GLU
164
n
169
GLU
164
H
ARG
165
n
170
ARG
165
H
PRO
166
n
171
PRO
166
H
VAL
167
n
172
VAL
167
H
CYS
168
n
173
CYS
168
H
LYS
169
n
174
LYS
169
H
ASP
170
n
175
ASP
170
H
SER
171
n
176
SER
171
H
THR
172
n
177
THR
172
H
ARG
173
n
178
ARG
173
H
ILE
174
n
179
ILE
174
H
ARG
175
n
180
ARG
175
H
ILE
176
n
181
ILE
176
H
THR
177
n
182
THR
177
H
ASP
178
n
183
ASP
178
H
ASN
179
n
184
ASN
179
H
MET
180
n
185
MET
180
H
PHE
181
n
186
PHE
181
H
CYS
182
n
187
CYS
182
H
ALA
183
n
188
ALA
183
H
GLY
184
n
189
GLY
184
H
TYR
184
n
190
A
TYR
184
H
LYS
185
n
191
LYS
185
H
PRO
186
n
192
PRO
186
H
ASP
186
n
193
A
ASP
186
H
GLU
186
n
194
B
GLU
186
H
GLY
186
n
195
C
GLY
186
H
LYS
186
n
196
D
LYS
186
H
ARG
187
n
197
ARG
187
H
GLY
188
n
198
GLY
188
H
ASP
189
n
199
ASP
189
H
ALA
190
n
200
ALA
190
H
CYS
191
n
201
CYS
191
H
GLU
192
n
202
GLU
192
H
GLY
193
n
203
GLY
193
H
ASP
194
n
204
ASP
194
H
SER
195
n
205
SER
195
H
GLY
196
n
206
GLY
196
H
GLY
197
n
207
GLY
197
H
PRO
198
n
208
PRO
198
H
PHE
199
n
209
PHE
199
H
VAL
200
n
210
VAL
200
H
MET
201
n
211
MET
201
H
LYS
202
n
212
LYS
202
H
SER
203
n
213
SER
203
H
PRO
204
n
214
PRO
204
H
PHE
204
n
215
A
PHE
204
H
ASN
204
n
216
B
ASN
204
H
ASN
205
n
217
ASN
205
H
ARG
206
n
218
ARG
206
H
TRP
207
n
219
TRP
207
H
TYR
208
n
220
TYR
208
H
GLN
209
n
221
GLN
209
H
MET
210
n
222
MET
210
H
GLY
211
n
223
GLY
211
H
ILE
212
n
224
ILE
212
H
VAL
213
n
225
VAL
213
H
SER
214
n
226
SER
214
H
TRP
215
n
227
TRP
215
H
GLY
216
n
228
GLY
216
H
GLU
217
n
229
GLU
217
H
GLY
219
n
230
GLY
219
H
CYS
220
n
231
CYS
220
H
ASP
221
n
232
ASP
221
H
ARG
221
n
233
A
ARG
221
H
ASP
222
n
234
ASP
222
H
GLY
223
n
235
GLY
223
H
LYS
224
n
236
LYS
224
H
TYR
225
n
237
TYR
225
H
GLY
226
n
238
GLY
226
H
PHE
227
n
239
PHE
227
H
TYR
228
n
240
TYR
228
H
THR
229
n
241
THR
229
H
HIS
230
n
242
HIS
230
H
VAL
231
n
243
VAL
231
H
PHE
232
n
244
PHE
232
H
ARG
233
n
245
ARG
233
H
LEU
234
n
246
LEU
234
H
LYS
235
n
247
LYS
235
H
LYS
236
n
248
LYS
236
H
TRP
237
n
249
TRP
237
H
ILE
238
n
250
ILE
238
H
GLN
239
n
251
GLN
239
H
LYS
240
n
252
LYS
240
H
VAL
241
n
253
VAL
241
H
ILE
242
n
254
ILE
242
H
ASP
243
n
255
ASP
243
H
GLN
244
n
256
GLN
244
H
PHE
245
n
257
PHE
245
H
GLY
246
n
258
GLY
246
H
GLU
247
n
259
GLU
247
H
author_defined_assembly
3
trimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
H
O
GLU
39
C
O
GLU
25
H
N
ARG
35
C
N
ARG
20
H
O
PHE
34
C
O
PHE
19
H
N
LEU
65
C
N
LEU
60
H
N
ILE
68
C
N
ILE
63
H
O
LYS
81
C
O
LYS
77
H
O
SER
45
C
O
SER
31
H
N
LEU
53
C
N
LEU
39
H
N
THR
54
C
N
THR
40
H
O
ALA
104
C
O
ALA
101
H
O
LYS
107
C
O
LYS
104
H
N
GLU
86
C
N
GLU
82
A
H
O
TYR
60
C
O
TYR
47
F
H
N
LYS
60
C
N
LYS
52
1
H
CL1
0G7
1
D
CL1
0G7
1
1
N
A
1
H
THR
148
C
THR
149
1
Y
B
1
H
ALA
148
C
ALA
150
1
Y
C
1
H
ASN
148
C
ASN
151
1
Y
D
1
H
VAL
148
C
VAL
152
1
Y
E
1
H
GLY
148
C
GLY
153
1
Y
F
1
H
LYS
148
C
LYS
154
1
Y
J
L
1
L
L
O
N
TYR
ASP
14
14
1.92
1
H
H
NZ
O
LYS
ASN
36
62
1.93
B
1
H
H
O
OG
GLU
SER
127
129
2.02
1
D
D
O4'
N3
DT
DT
407
409
2.07
1
H
H
NE2
O
GLN
THR
30
139
2.07
1
D
D
O6
N1
DG
DG
402
414
2.12
I
1
H
H
O
CB
THR
ASP
60
63
2.16
1
H
H
CB
O
CYS
SER
42
195
2.16
1
D
D
N7
N2
DG
DG
406
410
2.17
1
D
D
N2
N7
DG
DG
402
405
2.19
K
1
L
ILE
14
12.21
1
H
LYS
36
-13.01
1
H
ASP
63
13.49
1
H
LEU
64
10.76
1
H
LYS
81
10.54
1
H
SER
153
10.77
1
H
VAL
200
17.40
1
12.26
1.10
109.80
122.06
D
D
D
C5'
C4'
O4'
DG
DG
DG
401
401
401
N
1
-11.09
0.80
109.40
98.31
D
D
D
O5'
C5'
C4'
DG
DG
DG
402
402
402
N
1
-11.36
1.60
120.90
109.54
D
D
D
P
O5'
C5'
DG
DG
DG
402
402
402
N
1
-4.57
0.40
104.50
99.93
D
D
D
O4'
C4'
C3'
DG
DG
DG
402
402
402
N
1
-11.64
1.00
110.10
98.46
D
D
D
C1'
O4'
C4'
DG
DG
DG
402
402
402
N
1
-5.01
0.70
102.20
97.19
D
D
D
C4'
C3'
C2'
DG
DG
DG
402
402
402
N
1
23.84
1.20
119.70
143.54
D
D
D
C3'
O3'
P
DG
DG
DT
402
402
403
Y
1
-25.53
1.50
119.60
94.07
D
D
D
OP1
P
OP2
DT
DT
DT
403
403
403
N
1
7.24
1.20
110.70
117.94
D
D
D
O5'
P
OP2
DT
DT
DT
403
403
403
N
1
17.20
2.00
112.30
129.50
D
D
D
C4'
C3'
O3'
DT
DT
DT
403
403
403
N
1
10.72
0.30
108.30
119.02
D
D
D
O4'
C1'
N1
DT
DT
DT
403
403
403
N
1
-3.35
0.50
121.30
117.95
D
D
D
C6
N1
C2
DT
DT
DT
403
403
403
N
1
4.50
0.60
114.60
119.10
D
D
D
N1
C2
N3
DT
DT
DT
403
403
403
N
1
-5.32
0.60
127.20
121.88
D
D
D
C2
N3
C4
DT
DT
DT
403
403
403
N
1
3.78
0.60
115.20
118.98
D
D
D
N3
C4
C5
DT
DT
DT
403
403
403
N
1
-7.68
1.20
119.70
112.02
D
D
D
C3'
O3'
P
DT
DT
DT
403
403
404
Y
1
19.01
1.90
104.00
123.01
D
D
D
O3'
P
O5'
DT
DT
DT
403
404
404
Y
1
12.86
1.20
110.70
123.56
D
D
D
O5'
P
OP1
DT
DT
DT
404
404
404
N
1
-7.52
0.90
105.70
98.18
D
D
D
O5'
P
OP2
DT
DT
DT
404
404
404
N
1
21.07
1.60
120.90
141.97
D
D
D
P
O5'
C5'
DT
DT
DT
404
404
404
N
1
-9.37
0.40
104.50
95.13
D
D
D
O4'
C4'
C3'
DT
DT
DT
404
404
404
N
1
16.63
1.20
115.70
132.33
D
D
D
C5'
C4'
C3'
DT
DT
DT
404
404
404
N
1
-14.57
1.00
110.10
95.53
D
D
D
C1'
O4'
C4'
DT
DT
DT
404
404
404
N
1
17.26
2.00
112.30
129.56
D
D
D
C4'
C3'
O3'
DT
DT
DT
404
404
404
N
1
-4.44
0.70
102.20
97.76
D
D
D
C4'
C3'
C2'
DT
DT
DT
404
404
404
N
1
15.75
0.30
108.30
124.05
D
D
D
O4'
C1'
N1
DT
DT
DT
404
404
404
N
1
-3.93
0.50
121.30
117.37
D
D
D
C6
N1
C2
DT
DT
DT
404
404
404
N
1
4.44
0.60
114.60
119.04
D
D
D
N1
C2
N3
DT
DT
DT
404
404
404
N
1
-5.42
0.60
127.20
121.78
D
D
D
C2
N3
C4
DT
DT
DT
404
404
404
N
1
4.54
0.60
115.20
119.74
D
D
D
N3
C4
C5
DT
DT
DT
404
404
404
N
1
-3.76
0.60
122.30
118.54
D
D
D
N3
C2
O2
DT
DT
DT
404
404
404
N
1
22.17
1.20
119.70
141.87
D
D
D
C3'
O3'
P
DT
DT
DG
404
404
405
Y
1
8.18
1.10
110.50
118.68
D
D
D
O3'
P
OP2
DT
DG
DG
404
405
405
Y
1
-7.44
0.90
105.70
98.26
D
D
D
O5'
P
OP1
DG
DG
DG
405
405
405
N
1
8.27
1.20
115.70
123.97
D
D
D
C5'
C4'
C3'
DG
DG
DG
405
405
405
N
1
3.86
0.30
108.30
112.16
D
D
D
O4'
C1'
N9
DG
DG
DG
405
405
405
N
1
23.01
1.20
119.70
142.71
D
D
D
C3'
O3'
P
DG
DG
DG
405
405
406
Y
1
-13.13
1.50
119.60
106.47
D
D
D
OP1
P
OP2
DG
DG
DG
406
406
406
N
1
17.42
1.60
120.90
138.32
D
D
D
P
O5'
C5'
DG
DG
DG
406
406
406
N
1
-12.08
1.90
112.60
100.52
D
D
D
N9
C1'
C2'
DG
DG
DG
406
406
406
N
1
23.26
0.30
108.30
131.56
D
D
D
O4'
C1'
N9
DG
DG
DG
406
406
406
N
1
-4.67
0.60
119.90
115.23
D
D
D
N1
C6
O6
DG
DG
DG
406
406
406
N
1
8.98
1.20
110.70
119.68
D
D
D
O5'
P
OP1
DT
DT
DT
407
407
407
N
1
-7.70
0.80
109.40
101.70
D
D
D
O5'
C5'
C4'
DT
DT
DT
407
407
407
N
1
8.82
1.20
115.70
124.52
D
D
D
C5'
C4'
C3'
DT
DT
DT
407
407
407
N
1
-9.96
1.00
110.10
100.14
D
D
D
C1'
O4'
C4'
DT
DT
DT
407
407
407
N
1
14.55
2.00
112.30
126.85
D
D
D
C4'
C3'
O3'
DT
DT
DT
407
407
407
N
1
-10.18
0.70
102.20
92.02
D
D
D
C4'
C3'
C2'
DT
DT
DT
407
407
407
N
1
-14.88
0.80
102.40
87.52
D
D
D
C3'
C2'
C1'
DT
DT
DT
407
407
407
N
1
-15.16
1.90
112.60
97.44
D
D
D
N1
C1'
C2'
DT
DT
DT
407
407
407
N
1
-12.90
0.70
108.00
95.10
D
D
D
O4'
C1'
N1
DT
DT
DT
407
407
407
N
1
3.65
0.50
121.30
124.95
D
D
D
C6
N1
C2
DT
DT
DT
407
407
407
N
1
-4.48
0.60
127.20
122.72
D
D
D
C2
N3
C4
DT
DT
DT
407
407
407
N
1
5.19
0.60
115.20
120.39
D
D
D
N3
C4
C5
DT
DT
DT
407
407
407
N
1
-3.80
0.60
119.90
116.10
D
D
D
N3
C4
O4
DT
DT
DT
407
407
407
N
1
7.65
1.20
110.70
118.35
D
D
D
O5'
P
OP1
DG
DG
DG
408
408
408
N
1
-7.20
1.00
110.10
102.90
D
D
D
C1'
O4'
C4'
DG
DG
DG
408
408
408
N
1
11.99
1.20
119.70
131.69
D
D
D
C3'
O3'
P
DG
DG
DT
408
408
409
Y
1
-13.25
1.50
119.60
106.35
D
D
D
OP1
P
OP2
DT
DT
DT
409
409
409
N
1
10.36
1.20
110.70
121.06
D
D
D
O5'
P
OP2
DT
DT
DT
409
409
409
N
1
2.27
0.30
108.30
110.57
D
D
D
O4'
C1'
N1
DT
DT
DT
409
409
409
N
1
4.90
0.60
114.60
119.50
D
D
D
N1
C2
N3
DT
DT
DT
409
409
409
N
1
-5.67
0.60
127.20
121.53
D
D
D
C2
N3
C4
DT
DT
DT
409
409
409
N
1
12.47
1.20
119.70
132.17
D
D
D
C3'
O3'
P
DT
DT
DG
409
409
410
Y
1
-12.29
1.50
119.60
107.31
D
D
D
OP1
P
OP2
DG
DG
DG
410
410
410
N
1
-9.43
0.40
104.50
95.07
D
D
D
O4'
C4'
C3'
DG
DG
DG
410
410
410
N
1
-15.11
1.00
110.10
94.99
D
D
D
C1'
O4'
C4'
DG
DG
DG
410
410
410
N
1
13.81
0.30
108.30
122.11
D
D
D
O4'
C1'
N9
DG
DG
DG
410
410
410
N
1
-2.82
0.40
106.40
103.58
D
D
D
C8
N9
C4
DG
DG
DG
410
410
410
N
1
2.52
0.40
105.40
107.92
D
D
D
N9
C4
C5
DG
DG
DG
410
410
410
N
1
-3.68
0.60
119.90
116.22
D
D
D
N1
C6
O6
DG
DG
DG
410
410
410
N
1
-8.24
0.80
105.90
97.66
D
D
D
O4'
C1'
C2'
DG
DG
DG
411
411
411
N
1
14.34
0.30
108.30
122.64
D
D
D
O4'
C1'
N9
DG
DG
DG
411
411
411
N
1
15.63
1.20
119.70
135.33
D
D
D
C3'
O3'
P
DG
DG
DT
411
411
412
Y
1
-14.09
1.50
119.60
105.51
D
D
D
OP1
P
OP2
DT
DT
DT
412
412
412
N
1
8.68
1.20
110.70
119.38
D
D
D
O5'
P
OP1
DT
DT
DT
412
412
412
N
1
18.97
1.60
120.90
139.87
D
D
D
P
O5'
C5'
DT
DT
DT
412
412
412
N
1
18.01
0.30
108.30
126.31
D
D
D
O4'
C1'
N1
DT
DT
DT
412
412
412
N
1
-4.77
0.60
127.20
122.43
D
D
D
C2
N3
C4
DT
DT
DT
412
412
412
N
1
4.42
0.60
115.20
119.62
D
D
D
N3
C4
C5
DT
DT
DT
412
412
412
N
1
29.42
1.20
119.70
149.12
D
D
D
C3'
O3'
P
DT
DT
DT
412
412
413
Y
1
-14.67
1.50
119.60
104.93
D
D
D
OP1
P
OP2
DT
DT
DT
413
413
413
N
1
17.14
1.60
120.90
138.04
D
D
D
P
O5'
C5'
DT
DT
DT
413
413
413
N
1
-2.90
0.40
104.50
101.60
D
D
D
O4'
C4'
C3'
DT
DT
DT
413
413
413
N
1
-7.00
0.80
105.90
98.90
D
D
D
O4'
C1'
C2'
DT
DT
DT
413
413
413
N
1
8.60
0.30
108.30
116.90
D
D
D
O4'
C1'
N1
DT
DT
DT
413
413
413
N
1
-3.13
0.50
121.30
118.17
D
D
D
C6
N1
C2
DT
DT
DT
413
413
413
N
1
4.78
0.60
114.60
119.38
D
D
D
N1
C2
N3
DT
DT
DT
413
413
413
N
1
-5.42
0.60
127.20
121.78
D
D
D
C2
N3
C4
DT
DT
DT
413
413
413
N
1
3.71
0.60
115.20
118.91
D
D
D
N3
C4
C5
DT
DT
DT
413
413
413
N
1
-6.76
0.60
119.90
113.14
D
D
D
N3
C4
O4
DT
DT
DT
413
413
413
N
1
-12.21
1.50
119.60
107.39
D
D
D
OP1
P
OP2
DG
DG
DG
414
414
414
N
1
-4.00
0.60
125.10
121.10
D
D
D
C6
N1
C2
DG
DG
DG
414
414
414
N
1
4.33
0.50
111.50
115.83
D
D
D
C5
C6
N1
DG
DG
DG
414
414
414
N
1
5.34
0.30
108.30
113.64
D
D
D
O4'
C1'
N9
DG
DG
DG
415
415
415
N
1
-3.76
0.60
119.90
116.14
D
D
D
N1
C6
O6
DG
DG
DG
415
415
415
N
1
-10.91
1.40
123.60
112.69
L
L
L
CD
NE
CZ
ARG
ARG
ARG
4
4
4
N
1
-5.59
0.50
120.30
114.71
L
L
L
NE
CZ
NH1
ARG
ARG
ARG
4
4
4
N
1
5.22
0.50
120.30
125.52
L
L
L
NE
CZ
NH2
ARG
ARG
ARG
4
4
4
N
1
24.15
2.50
121.70
145.85
L
L
L
C
N
CA
LYS
SER
SER
10
11
11
Y
1
-6.17
0.90
118.30
112.13
L
L
L
CB
CG
OD1
ASP
ASP
ASP
14
14
14
N
A
1
-13.61
2.20
117.20
103.59
L
L
L
CA
C
N
ASP
ASP
LYS
14
14
14
Y
C
C
D
1
10.49
1.60
122.70
133.19
L
L
L
O
C
N
GLU
GLU
ARG
14
14
14
Y
D
D
D
1
-8.23
1.10
119.40
111.17
L
L
L
NH1
CZ
NH2
ARG
ARG
ARG
14
14
14
N
D
D
D
1
3.81
0.50
120.30
124.11
L
L
L
NE
CZ
NH1
ARG
ARG
ARG
14
14
14
N
D
D
D
1
4.28
0.50
120.30
124.58
L
L
L
NE
CZ
NH2
ARG
ARG
ARG
14
14
14
N
J
J
J
1
-13.54
2.10
120.10
106.56
L
L
L
CA
C
O
TYR
TYR
TYR
14
14
14
N
1
11.86
1.60
122.70
134.56
H
H
H
O
C
N
GLN
GLN
VAL
30
30
31
Y
A
1
-10.05
1.60
122.70
112.65
H
H
H
O
C
N
LYS
LYS
SER
36
36
36
Y
A
A
A
1
-12.20
1.90
110.10
97.90
H
H
H
CB
CA
C
SER
SER
SER
36
36
36
N
1
8.79
1.20
123.30
132.09
H
H
H
OE1
CD
OE2
GLU
GLU
GLU
39
39
39
N
1
-9.88
1.40
123.60
113.72
H
H
H
CD
NE
CZ
ARG
ARG
ARG
50
50
50
N
1
-4.04
0.50
120.30
116.26
H
H
H
NE
CZ
NH1
ARG
ARG
ARG
50
50
50
N
D
D
D
1
11.79
1.90
113.70
125.49
H
H
H
CA
CB
CG
TRP
TRP
TRP
60
60
60
N
E
E
E
1
-8.00
0.90
118.30
110.30
H
H
H
CB
CG
OD2
ASP
ASP
ASP
60
60
60
N
F
F
F
1
11.93
1.80
110.60
122.53
H
H
H
N
CA
CB
LYS
LYS
LYS
60
60
60
N
F
F
G
1
10.34
1.60
122.70
133.04
H
H
H
O
C
N
LYS
LYS
ASN
60
60
60
Y
1
3.55
0.50
120.30
123.85
H
H
H
NE
CZ
NH1
ARG
ARG
ARG
67
67
67
N
1
-3.15
0.50
120.30
117.15
H
H
H
NE
CZ
NH2
ARG
ARG
ARG
67
67
67
N
1
3.53
0.50
120.30
123.83
H
H
H
NE
CZ
NH1
ARG
ARG
ARG
73
73
73
N
1
9.00
1.40
123.60
132.60
H
H
H
CD
NE
CZ
ARG
ARG
ARG
75
75
75
N
1
5.40
0.50
120.30
125.70
H
H
H
NE
CZ
NH1
ARG
ARG
ARG
75
75
75
N
A
A
A
1
3.94
0.50
120.30
124.24
H
H
H
NE
CZ
NH2
ARG
ARG
ARG
77
77
77
N
1
19.45
2.20
113.40
132.85
H
H
H
CA
CB
CG
GLU
GLU
GLU
86
86
86
N
1
11.92
1.90
113.40
125.32
H
H
H
CA
CB
CG
TYR
TYR
TYR
89
89
89
N
1
16.22
1.90
113.70
129.92
H
H
H
CA
CB
CG
TRP
TRP
TRP
96
96
96
N
1
9.62
1.40
123.60
133.22
H
H
H
CD
NE
CZ
ARG
ARG
ARG
97
97
97
N
1
-7.01
1.10
119.40
112.39
H
H
H
NH1
CZ
NH2
ARG
ARG
ARG
97
97
97
N
1
5.27
0.50
120.30
125.57
H
H
H
NE
CZ
NH1
ARG
ARG
ARG
97
97
97
N
A
A
A
1
-7.89
1.20
123.30
115.41
H
H
H
OE1
CD
OE2
GLU
GLU
GLU
97
97
97
N
1
11.12
1.40
123.60
134.72
H
H
H
CD
NE
CZ
ARG
ARG
ARG
101
101
101
N
1
-9.85
1.10
119.40
109.55
H
H
H
NH1
CZ
NH2
ARG
ARG
ARG
101
101
101
N
1
14.69
0.50
120.30
134.99
H
H
H
NE
CZ
NH1
ARG
ARG
ARG
101
101
101
N
1
-5.00
0.50
120.30
115.30
H
H
H
NE
CZ
NH2
ARG
ARG
ARG
101
101
101
N
1
5.43
0.90
118.30
123.73
H
H
H
CB
CG
OD1
ASP
ASP
ASP
102
102
102
N
1
-10.66
1.60
122.70
112.04
H
H
H
O
C
N
LEU
LEU
MET
105
105
106
Y
1
-11.78
1.60
122.70
110.92
H
H
H
O
C
N
ASP
ASP
TYR
116
116
117
Y
1
12.64
1.90
110.20
122.84
H
H
H
CB
CA
C
LEU
LEU
LEU
123
123
123
N
1
6.12
0.90
118.30
124.42
H
H
H
CB
CG
OD1
ASP
ASP
ASP
125
125
125
N
1
3.89
0.50
120.30
124.19
H
H
H
NE
CZ
NH1
ARG
ARG
ARG
126
126
126
N
1
-6.91
0.50
120.30
113.39
H
H
H
NE
CZ
NH2
ARG
ARG
ARG
126
126
126
N
1
9.44
1.20
123.30
132.74
H
H
H
OE1
CD
OE2
GLU
GLU
GLU
127
127
127
N
A
B
B
1
15.25
2.50
121.70
136.95
H
H
H
C
N
CA
ALA
SER
SER
129
129
129
Y
B
B
B
1
-13.48
1.50
110.50
97.02
H
H
H
N
CA
CB
SER
SER
SER
129
129
129
N
1
17.81
2.10
122.30
140.11
H
H
H
C
N
CA
LYS
GLY
GLY
135
136
136
Y
1
8.60
1.40
123.60
132.20
H
H
H
CD
NE
CZ
ARG
ARG
ARG
137
137
137
N
1
5.15
0.50
120.30
125.45
H
H
H
NE
CZ
NH1
ARG
ARG
ARG
137
137
137
N
1
7.49
1.20
111.50
118.99
H
H
H
CB
CA
C
CYS
CYS
CYS
168
168
168
N
1
3.08
0.50
120.30
123.38
H
H
H
NE
CZ
NH1
ARG
ARG
ARG
175
175
175
N
1
12.43
2.00
110.40
122.83
H
H
H
CB
CA
C
LYS
LYS
LYS
185
185
185
N
1
3.71
0.50
120.30
124.01
H
H
H
NE
CZ
NH2
ARG
ARG
ARG
187
187
187
N
1
18.09
2.10
122.30
140.39
H
H
H
C
N
CA
GLY
GLY
GLY
196
197
197
Y
1
3.11
0.50
120.30
123.41
H
H
H
NE
CZ
NH2
ARG
ARG
ARG
206
206
206
N
A
A
A
1
3.48
0.50
120.30
123.78
H
H
H
NE
CZ
NH2
ARG
ARG
ARG
221
221
221
N
1
12.35
2.00
110.40
122.75
H
H
H
CB
CA
C
TYR
TYR
TYR
225
225
225
N
1
4.29
0.50
120.30
124.59
H
H
H
NE
CZ
NH1
ARG
ARG
ARG
233
233
233
N
1
-6.73
0.90
118.30
111.57
H
H
H
CB
CG
OD1
ASP
ASP
ASP
243
243
243
N
1
D
D
O4'
C1'
DG
DG
401
401
0.081
0.011
1.420
1.501
N
1
D
D
O4'
C1'
DG
DG
402
402
0.075
0.011
1.420
1.495
N
1
D
D
O4'
C4'
DT
DT
404
404
0.074
0.009
1.449
1.523
N
1
D
D
P
O5'
DG
DG
405
405
0.063
0.010
1.593
1.656
N
1
D
D
C3'
C2'
DT
DT
407
407
0.110
0.012
1.518
1.628
N
1
D
D
O4'
C1'
DG
DG
408
408
0.078
0.011
1.420
1.498
N
1
D
D
O4'
C1'
DT
DT
413
413
0.079
0.011
1.420
1.499
N
F
E
1
L
L
C
N
GLY
SER
1
1
0.173
0.023
1.336
1.509
Y
G
1
L
PHE
1
-41.87
-158.66
E
1
L
SER
1
44.30
22.08
B
1
L
ALA
1
178.61
-39.33
1
L
PHE
7
-125.73
-73.41
1
L
LYS
9
-47.61
-7.69
1
L
SER
11
38.08
38.84
A
1
L
LYS
14
-29.97
-65.61
D
1
L
ARG
14
-54.70
-7.81
G
1
L
LEU
14
-51.70
2.97
J
1
L
TYR
14
-66.98
90.08
K
1
L
ILE
14
-33.82
87.75
L
1
L
ASP
14
70.14
98.53
1
H
GLU
18
36.64
68.73
1
H
SER
20
-171.73
103.64
1
H
ASP
21
-26.00
111.78
1
H
ARG
50
-169.01
11.53
1
H
THR
54
-118.37
-168.71
1
H
LEU
59
-142.41
-10.37
G
1
H
ASN
60
-160.22
83.48
1
H
GLU
61
-25.38
-69.69
1
H
HIS
71
-142.36
-53.10
A
1
H
ARG
77
-26.70
-56.25
1
H
ILE
79
-91.52
-64.17
1
H
ASN
98
-160.13
60.57
1
H
LEU
99
36.57
46.03
1
H
ALA
104
-176.60
137.11
1
H
PHE
114
-108.82
43.66
1
H
ASP
116
25.22
9.88
1
H
TYR
117
-164.59
-0.80
1
H
PRO
124
-45.55
162.19
1
H
GLU
127
-54.75
-70.85
1
H
LEU
130
-69.21
42.68
1
H
ASN
143
-36.94
146.07
1
H
PRO
166
-60.95
1.62
1
H
CYS
168
-67.89
8.50
1
H
LYS
169
-101.70
-68.64
1
H
ASP
170
-76.65
23.74
1
H
ILE
174
-43.66
153.33
1
H
ASP
178
-72.60
21.32
A
1
H
ASP
186
-94.69
54.14
B
1
H
GLU
186
-160.11
61.34
1
H
SER
195
-31.38
143.13
1
H
TRP
215
-168.08
-161.71
1
H
GLU
217
-102.18
66.00
1
H
CYS
220
-29.61
120.93
1
H
ASP
222
-68.94
99.27
1
H
HIS
230
-56.52
80.40
1
H
ARG
233
-50.25
9.63
1
H
LEU
234
-144.83
-1.30
1
H
ILE
238
-67.82
-79.41
0.159
0.159
2.9
6806
1
2.9
130
2815
30
315
2340
0.02
3.3
2.87
1HUT
6990
1
refinement
X-PLOR
ALPHA-THROMBIN (E.C.3.4.21.5)/DNA, PPACK PEPTIDE
THE STRUCTURE OF ALPHA-THROMBIN INHIBITED BY A 15-MER SINGLE-STRANDED DNA APTAMER
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
H
ASP
125
C
ASP
122
HELX_P
H
LEU
130
C
LEU
130
1
4
9
H
GLU
164
C
GLU
169
HELX_P
H
LYS
169
C
LYS
174
1
5
6
H
LEU
234
C
LEU
246
HELX_P
H
PHE
245
C
PHE
257
1
6
12
disulf
2.025
L
CYS
1
B
SG
CYS
9
1_555
H
CYS
122
C
SG
CYS
119
1_555
disulf
2.023
H
CYS
42
C
SG
CYS
28
1_555
H
CYS
58
C
SG
CYS
44
1_555
disulf
2.003
H
CYS
168
C
SG
CYS
173
1_555
H
CYS
182
C
SG
CYS
187
1_555
disulf
2.016
H
CYS
191
C
SG
CYS
201
1_555
H
CYS
220
C
SG
CYS
231
1_555
hydrog
TYPE_6_PAIR
D
DG
401
A
N7
DG
1
1_555
D
DG
406
A
N2
DG
6
1_555
hydrog
TYPE_6_PAIR
D
DG
401
A
O6
DG
1
1_555
D
DG
406
A
N1
DG
6
1_555
hydrog
TYPE_6_PAIR
D
DG
401
A
N1
DG
1
1_555
D
DG
415
A
O6
DG
15
1_555
hydrog
TYPE_6_PAIR
D
DG
401
A
N2
DG
1
1_555
D
DG
415
A
N7
DG
15
1_555
hydrog
DG-DG MISPAIR
D
DG
402
A
N1
DG
2
1_555
D
DG
405
A
O6
DG
5
1_555
hydrog
DG-DG MISPAIR
D
DG
402
A
O6
DG
2
1_555
D
DG
414
A
N2
DG
14
1_555
hydrog
DG-DG MISPAIR
D
DG
405
A
N1
DG
5
1_555
D
DG
411
A
O6
DG
11
1_555
hydrog
DG-DG MISPAIR
D
DG
406
A
O6
DG
6
1_555
D
DG
410
A
N1
DG
10
1_555
hydrog
DG-DG MISPAIR
D
DG
410
A
N7
DG
10
1_555
D
DG
415
A
N2
DG
15
1_555
hydrog
TYPE_6_PAIR
D
DG
411
A
N1
DG
11
1_555
D
DG
414
A
O6
DG
14
1_555
hydrog
TYPE_6_PAIR
D
DG
411
A
N2
DG
11
1_555
D
DG
414
A
N7
DG
14
1_555
HYDROLASE/HYDROLASE INHIBITOR/DNA
THROMBIN, BLOOD CLOTTING, HYDROLASE-HYDROLASE INHIBITOR-DNA COMPLEX
H
SER
36
C
SER
22
A
1
H
PRO
37
C
PRO
23
-4.89
THRB_HUMAN
UNP
2
328
P00734
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
THRB_HUMAN
UNP
3
364
P00734
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
1HUT
PDB
1
1
1HUT
GGTTGGTGTGGTTGG
328
363
1HUT
1
15
P00734
H
L
1
1
36
364
622
1HUT
16
247
P00734
H
2
1
259
401
415
1HUT
401
415
1HUT
D
3
1
15
4
4
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
H
GLU
39
C
GLU
25
H
LEU
40
C
LEU
26
H
LEU
33
C
LEU
18
H
ARG
35
C
ARG
20
H
LEU
64
C
LEU
59
H
ILE
68
C
ILE
63
H
LYS
81
C
LYS
77
H
SER
83
C
SER
79
H
SER
45
C
SER
31
H
LEU
46
C
LEU
32
H
TRP
51
C
TRP
37
H
THR
54
C
THR
40
H
ALA
104
C
ALA
101
H
LEU
108
C
LEU
105
H
LEU
85
C
LEU
81
H
ILE
90
C
ILE
86
H
LEU
60
C
LEU
46
H
TYR
60
C
TYR
47
A
H
LYS
60
C
LYS
52
H
ASN
60
C
ASN
53
F
G
BINDING SITE FOR RESIDUE 0G7 H 1
Software
14
CATALYTIC SITE
Author
3
H
HIS
57
C
HIS
43
14
1_555
H
TYR
60
C
TYR
47
A
14
1_555
H
TRP
60
C
TRP
50
D
14
1_555
H
ASN
98
C
ASN
95
14
1_555
H
LEU
99
C
LEU
96
14
1_555
H
ILE
174
C
ILE
179
14
1_555
H
ASP
189
C
ASP
199
14
1_555
H
ALA
190
C
ALA
200
14
1_555
H
CYS
191
C
CYS
201
14
1_555
H
SER
195
C
SER
205
14
1_555
H
SER
214
C
SER
226
14
1_555
H
TRP
215
C
TRP
227
14
1_555
H
GLY
216
C
GLY
228
14
1_555
H
CYS
220
C
CYS
231
14
1_555
H
HIS
57
C
HIS
43
3
1_555
H
ASP
102
C
ASP
99
3
1_555
H
SER
195
C
SER
205
3
1_555
19
orthorhombic
P 21 21 21