0.017693 0.000000 0.000000 0.000000 0.012913 0.000000 0.000000 0.000000 0.010048 0.00000 0.00000 0.00000 Padmanabhan, K. Padmanabhan, K.P. Ferrara, J.D. Sadler, J.E. Tulinsky, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 56.520 77.440 99.520 C21 H31 Cl N6 O3 450.962 D-phenylalanyl-N-[(3S)-6-carbamimidamido-1-chloro-2-oxohexan-3-yl]-L-prolinamide d-Phe-Pro-Arg chloromethylketone (PPACK) peptide-like C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 268 17651 17654 8102368 The structure of alpha-thrombin inhibited by a 15-mer single-stranded DNA aptamer. 1993 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 IMAGE PLATE RIGAKU RAXIS II SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 4743.051 DNA 5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3' 1 syn polymer 4096.534 ALPHA-Thrombin light chain 3.4.21.5 RESIDUES 328-363 1 nat polymer 29780.219 ALPHA-Thrombin heavy chain 3.4.21.5 RESIDUES 364-622 1 nat polymer 450.962 D-phenylalanyl-N-[(3S)-6-carbamimidamido-1-chloro-2-oxohexan-3-yl]-L-prolinamide 1 syn non-polymer 18.015 water 130 nat water COAGULATION FACTOR II, THROMBIN COAGULATION FACTOR II, THROMBIN E.C.3.4.21.5 E.C.3.4.21.5 no no (DG)(DG)(DT)(DT)(DG)(DG)(DT)(DG)(DT)(DG)(DG)(DT)(DT)(DG)(DG) GGTTGGTGTGGTTGG D polydeoxyribonucleotide no no TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR L polypeptide(L) no no IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE H polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample 9606 Homo sapiens PLASMA BLOOD human Homo sample 9606 Homo sapiens PLASMA BLOOD 1 2.78 55.72 repository Initial release Version format compliance Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Other 1 0 1994-06-22 1 1 2008-05-22 1 2 2011-07-13 1 3 2011-07-27 1 4 2013-02-27 BNL Y NDB 1993-05-27 REL 0G7 D-phenylalanyl-N-[(3S)-6-carbamimidamido-1-chloro-2-oxohexan-3-yl]-L-prolinamide HOH water CHYMOTRYPSIN NUMBERING SYSTEM IS USED BASED ON THE TOPOLOGICAL ALIGNMENT WITH THE STRUCTURE OF CHYMOTRYPSIN (W.BODE ET AL., 1989, EMBO J. 8, 3467-3475). THROMBIN IS CLEAVED BETWEEN RESIDUES 15 AND 16. CHAIN INDICATOR *L* IS USED FOR RESIDUES 1H - 15 AND CHAIN INDICATOR *H* IS USED FOR RESIDUES 16 - 247. CHAIN CHAIN INDICATOR *D* IS USED FOR THE OLIGONUCLEOTIDE. Inhibitor D-Phe-Pro-Arg chloromethylketone (PPACK) Peptide-like DPN 1 4 0G7 0G7 1 H HOH 504 5 HOH HOH 504 D HOH 512 5 HOH HOH 512 D HOH 514 5 HOH HOH 514 D HOH 526 5 HOH HOH 526 D HOH 544 5 HOH HOH 544 D HOH 574 5 HOH HOH 574 D HOH 578 5 HOH HOH 578 D HOH 583 5 HOH HOH 583 D HOH 599 5 HOH HOH 599 D HOH 602 5 HOH HOH 602 D HOH 603 5 HOH HOH 603 D HOH 615 5 HOH HOH 615 D HOH 618 5 HOH HOH 618 D HOH 621 5 HOH HOH 621 D HOH 623 5 HOH HOH 623 D HOH 624 5 HOH HOH 624 D HOH 630 5 HOH HOH 630 D HOH 632 5 HOH HOH 632 D HOH 634 5 HOH HOH 634 D HOH 637 5 HOH HOH 637 D HOH 644 5 HOH HOH 644 D HOH 645 5 HOH HOH 645 D HOH 648 5 HOH HOH 648 D HOH 652 5 HOH HOH 652 D HOH 677 5 HOH HOH 677 D HOH 501 5 HOH HOH 501 L HOH 519 5 HOH HOH 519 L HOH 521 5 HOH HOH 521 L HOH 540 5 HOH HOH 540 L HOH 543 5 HOH HOH 543 L HOH 582 5 HOH HOH 582 L HOH 597 5 HOH HOH 597 L HOH 598 5 HOH HOH 598 L HOH 640 5 HOH HOH 640 L HOH 651 5 HOH HOH 651 L HOH 666 5 HOH HOH 666 L HOH 671 5 HOH HOH 671 L HOH 678 5 HOH HOH 678 L HOH 681 5 HOH HOH 681 L HOH 686 5 HOH HOH 686 L HOH 502 5 HOH HOH 502 H HOH 503 5 HOH HOH 503 H HOH 505 5 HOH HOH 505 H HOH 506 5 HOH HOH 506 H HOH 508 5 HOH HOH 508 H HOH 509 5 HOH HOH 509 H HOH 510 5 HOH HOH 510 H HOH 511 5 HOH HOH 511 H HOH 516 5 HOH HOH 516 H HOH 517 5 HOH HOH 517 H HOH 518 5 HOH HOH 518 H HOH 523 5 HOH HOH 523 H HOH 525 5 HOH HOH 525 H HOH 528 5 HOH HOH 528 H HOH 529 5 HOH HOH 529 H HOH 531 5 HOH HOH 531 H HOH 532 5 HOH HOH 532 H HOH 533 5 HOH HOH 533 H HOH 536 5 HOH HOH 536 H HOH 538 5 HOH HOH 538 H HOH 539 5 HOH HOH 539 H HOH 541 5 HOH HOH 541 H HOH 542 5 HOH HOH 542 H HOH 553 5 HOH HOH 553 H HOH 554 5 HOH HOH 554 H HOH 555 5 HOH HOH 555 H HOH 556 5 HOH HOH 556 H HOH 558 5 HOH HOH 558 H HOH 560 5 HOH HOH 560 H HOH 561 5 HOH HOH 561 H HOH 562 5 HOH HOH 562 H HOH 563 5 HOH HOH 563 H HOH 565 5 HOH HOH 565 H HOH 566 5 HOH HOH 566 H HOH 570 5 HOH HOH 570 H HOH 573 5 HOH HOH 573 H HOH 575 5 HOH HOH 575 H HOH 579 5 HOH HOH 579 H HOH 581 5 HOH HOH 581 H HOH 586 5 HOH HOH 586 H HOH 589 5 HOH HOH 589 H HOH 592 5 HOH HOH 592 H HOH 594 5 HOH HOH 594 H HOH 595 5 HOH HOH 595 H HOH 596 5 HOH HOH 596 H HOH 600 5 HOH HOH 600 H HOH 605 5 HOH HOH 605 H HOH 611 5 HOH HOH 611 H HOH 612 5 HOH HOH 612 H HOH 613 5 HOH HOH 613 H HOH 616 5 HOH HOH 616 H HOH 617 5 HOH HOH 617 H HOH 619 5 HOH HOH 619 H HOH 620 5 HOH HOH 620 H HOH 622 5 HOH HOH 622 H HOH 625 5 HOH HOH 625 H HOH 626 5 HOH HOH 626 H HOH 627 5 HOH HOH 627 H HOH 629 5 HOH HOH 629 H HOH 631 5 HOH HOH 631 H HOH 633 5 HOH HOH 633 H HOH 635 5 HOH HOH 635 H HOH 638 5 HOH HOH 638 H HOH 639 5 HOH HOH 639 H HOH 641 5 HOH HOH 641 H HOH 643 5 HOH HOH 643 H HOH 646 5 HOH HOH 646 H HOH 650 5 HOH HOH 650 H HOH 653 5 HOH HOH 653 H HOH 654 5 HOH HOH 654 H HOH 655 5 HOH HOH 655 H HOH 656 5 HOH HOH 656 H HOH 657 5 HOH HOH 657 H HOH 658 5 HOH HOH 658 H HOH 662 5 HOH HOH 662 H HOH 663 5 HOH HOH 663 H HOH 664 5 HOH HOH 664 H HOH 665 5 HOH HOH 665 H HOH 667 5 HOH HOH 667 H HOH 668 5 HOH HOH 668 H HOH 669 5 HOH HOH 669 H HOH 670 5 HOH HOH 670 H HOH 672 5 HOH HOH 672 H HOH 673 5 HOH HOH 673 H HOH 674 5 HOH HOH 674 H HOH 676 5 HOH HOH 676 H HOH 679 5 HOH HOH 679 H HOH 680 5 HOH HOH 680 H HOH 684 5 HOH HOH 684 H HOH 685 5 HOH HOH 685 H G 401 n 1 DG 401 D G 402 n 2 DG 402 D T 403 n 3 DT 403 D T 404 n 4 DT 404 D G 405 n 5 DG 405 D G 406 n 6 DG 406 D T 407 n 7 DT 407 D G 408 n 8 DG 408 D T 409 n 9 DT 409 D G 410 n 10 DG 410 D G 411 n 11 DG 411 D T 412 n 12 DT 412 D T 413 n 13 DT 413 D G 414 n 14 DG 414 D G 415 n 15 DG 415 D THR 1 n 1 H THR 1 L PHE 1 n 2 G PHE 1 L GLY 1 n 3 F GLY 1 L SER 1 n 4 E SER 1 L GLY 1 n 5 D GLY 1 L GLU 1 n 6 C GLU 1 L ALA 1 n 7 B ALA 1 L ASP 1 n 8 A ASP 1 L CYS 1 n 9 CYS 1 L GLY 2 n 10 GLY 2 L LEU 3 n 11 LEU 3 L ARG 4 n 12 ARG 4 L PRO 5 n 13 PRO 5 L LEU 6 n 14 LEU 6 L PHE 7 n 15 PHE 7 L GLU 8 n 16 GLU 8 L LYS 9 n 17 LYS 9 L LYS 10 n 18 LYS 10 L SER 11 n 19 SER 11 L LEU 12 n 20 LEU 12 L GLU 13 n 21 GLU 13 L ASP 14 n 22 ASP 14 L LYS 14 n 23 A LYS 14 L THR 14 n 24 B THR 14 L GLU 14 n 25 C GLU 14 L ARG 14 n 26 D ARG 14 L GLU 14 n 27 E GLU 14 L LEU 14 n 28 F LEU 14 L LEU 14 n 29 G LEU 14 L GLU 14 n 30 H GLU 14 L SER 14 n 31 I SER 14 L TYR 14 n 32 J TYR 14 L ILE 14 n 33 K ILE 14 L ASP 14 n 34 L ASP 14 L GLY 14 n 35 M GLY 14 L ARG 15 n 36 ARG 15 L ILE 16 n 1 ILE 16 H VAL 17 n 2 VAL 17 H GLU 18 n 3 GLU 18 H GLY 19 n 4 GLY 19 H SER 20 n 5 SER 20 H ASP 21 n 6 ASP 21 H ALA 22 n 7 ALA 22 H GLU 23 n 8 GLU 23 H ILE 24 n 9 ILE 24 H GLY 25 n 10 GLY 25 H MET 26 n 11 MET 26 H SER 27 n 12 SER 27 H PRO 28 n 13 PRO 28 H TRP 29 n 14 TRP 29 H GLN 30 n 15 GLN 30 H VAL 31 n 16 VAL 31 H MET 32 n 17 MET 32 H LEU 33 n 18 LEU 33 H PHE 34 n 19 PHE 34 H ARG 35 n 20 ARG 35 H LYS 36 n 21 LYS 36 H SER 36 n 22 A SER 36 H PRO 37 n 23 PRO 37 H GLN 38 n 24 GLN 38 H GLU 39 n 25 GLU 39 H LEU 40 n 26 LEU 40 H LEU 41 n 27 LEU 41 H CYS 42 n 28 CYS 42 H GLY 43 n 29 GLY 43 H ALA 44 n 30 ALA 44 H SER 45 n 31 SER 45 H LEU 46 n 32 LEU 46 H ILE 47 n 33 ILE 47 H SER 48 n 34 SER 48 H ASP 49 n 35 ASP 49 H ARG 50 n 36 ARG 50 H TRP 51 n 37 TRP 51 H VAL 52 n 38 VAL 52 H LEU 53 n 39 LEU 53 H THR 54 n 40 THR 54 H ALA 55 n 41 ALA 55 H ALA 56 n 42 ALA 56 H HIS 57 n 43 HIS 57 H CYS 58 n 44 CYS 58 H LEU 59 n 45 LEU 59 H LEU 60 n 46 LEU 60 H TYR 60 n 47 A TYR 60 H PRO 60 n 48 B PRO 60 H PRO 60 n 49 C PRO 60 H TRP 60 n 50 D TRP 60 H ASP 60 n 51 E ASP 60 H LYS 60 n 52 F LYS 60 H ASN 60 n 53 G ASN 60 H PHE 60 n 54 H PHE 60 H THR 60 n 55 I THR 60 H GLU 61 n 56 GLU 61 H ASN 62 n 57 ASN 62 H ASP 63 n 58 ASP 63 H LEU 64 n 59 LEU 64 H LEU 65 n 60 LEU 65 H VAL 66 n 61 VAL 66 H ARG 67 n 62 ARG 67 H ILE 68 n 63 ILE 68 H GLY 69 n 64 GLY 69 H LYS 70 n 65 LYS 70 H HIS 71 n 66 HIS 71 H SER 72 n 67 SER 72 H ARG 73 n 68 ARG 73 H THR 74 n 69 THR 74 H ARG 75 n 70 ARG 75 H TYR 76 n 71 TYR 76 H GLU 77 n 72 GLU 77 H ARG 77 n 73 A ARG 77 H ASN 78 n 74 ASN 78 H ILE 79 n 75 ILE 79 H GLU 80 n 76 GLU 80 H LYS 81 n 77 LYS 81 H ILE 82 n 78 ILE 82 H SER 83 n 79 SER 83 H MET 84 n 80 MET 84 H LEU 85 n 81 LEU 85 H GLU 86 n 82 GLU 86 H LYS 87 n 83 LYS 87 H ILE 88 n 84 ILE 88 H TYR 89 n 85 TYR 89 H ILE 90 n 86 ILE 90 H HIS 91 n 87 HIS 91 H PRO 92 n 88 PRO 92 H ARG 93 n 89 ARG 93 H TYR 94 n 90 TYR 94 H ASN 95 n 91 ASN 95 H TRP 96 n 92 TRP 96 H ARG 97 n 93 ARG 97 H GLU 97 n 94 A GLU 97 H ASN 98 n 95 ASN 98 H LEU 99 n 96 LEU 99 H ASP 100 n 97 ASP 100 H ARG 101 n 98 ARG 101 H ASP 102 n 99 ASP 102 H ILE 103 n 100 ILE 103 H ALA 104 n 101 ALA 104 H LEU 105 n 102 LEU 105 H MET 106 n 103 MET 106 H LYS 107 n 104 LYS 107 H LEU 108 n 105 LEU 108 H LYS 109 n 106 LYS 109 H LYS 110 n 107 LYS 110 H PRO 111 n 108 PRO 111 H VAL 112 n 109 VAL 112 H ALA 113 n 110 ALA 113 H PHE 114 n 111 PHE 114 H SER 115 n 112 SER 115 H ASP 116 n 113 ASP 116 H TYR 117 n 114 TYR 117 H ILE 118 n 115 ILE 118 H HIS 119 n 116 HIS 119 H PRO 120 n 117 PRO 120 H VAL 121 n 118 VAL 121 H CYS 122 n 119 CYS 122 H LEU 123 n 120 LEU 123 H PRO 124 n 121 PRO 124 H ASP 125 n 122 ASP 125 H ARG 126 n 123 ARG 126 H GLU 127 n 124 GLU 127 H THR 128 n 125 THR 128 H ALA 129 n 126 ALA 129 H ALA 129 n 127 A ALA 129 H SER 129 n 128 B SER 129 H LEU 129 n 129 C LEU 129 H LEU 130 n 130 LEU 130 H GLN 131 n 131 GLN 131 H ALA 132 n 132 ALA 132 H GLY 133 n 133 GLY 133 H TYR 134 n 134 TYR 134 H LYS 135 n 135 LYS 135 H GLY 136 n 136 GLY 136 H ARG 137 n 137 ARG 137 H VAL 138 n 138 VAL 138 H THR 139 n 139 THR 139 H GLY 140 n 140 GLY 140 H TRP 141 n 141 TRP 141 H GLY 142 n 142 GLY 142 H ASN 143 n 143 ASN 143 H LEU 144 n 144 LEU 144 H LYS 145 n 145 LYS 145 H GLU 146 n 146 GLU 146 H THR 147 n 147 THR 147 H TRP 148 n 148 TRP 148 H n 149 A 148 H n 150 B 148 H n 151 C 148 H n 152 D 148 H n 153 E 148 H n 154 F 148 H GLY 150 n 155 GLY 150 H GLN 151 n 156 GLN 151 H PRO 152 n 157 PRO 152 H SER 153 n 158 SER 153 H VAL 154 n 159 VAL 154 H LEU 155 n 160 LEU 155 H GLN 156 n 161 GLN 156 H VAL 157 n 162 VAL 157 H VAL 158 n 163 VAL 158 H ASN 159 n 164 ASN 159 H LEU 160 n 165 LEU 160 H PRO 161 n 166 PRO 161 H ILE 162 n 167 ILE 162 H VAL 163 n 168 VAL 163 H GLU 164 n 169 GLU 164 H ARG 165 n 170 ARG 165 H PRO 166 n 171 PRO 166 H VAL 167 n 172 VAL 167 H CYS 168 n 173 CYS 168 H LYS 169 n 174 LYS 169 H ASP 170 n 175 ASP 170 H SER 171 n 176 SER 171 H THR 172 n 177 THR 172 H ARG 173 n 178 ARG 173 H ILE 174 n 179 ILE 174 H ARG 175 n 180 ARG 175 H ILE 176 n 181 ILE 176 H THR 177 n 182 THR 177 H ASP 178 n 183 ASP 178 H ASN 179 n 184 ASN 179 H MET 180 n 185 MET 180 H PHE 181 n 186 PHE 181 H CYS 182 n 187 CYS 182 H ALA 183 n 188 ALA 183 H GLY 184 n 189 GLY 184 H TYR 184 n 190 A TYR 184 H LYS 185 n 191 LYS 185 H PRO 186 n 192 PRO 186 H ASP 186 n 193 A ASP 186 H GLU 186 n 194 B GLU 186 H GLY 186 n 195 C GLY 186 H LYS 186 n 196 D LYS 186 H ARG 187 n 197 ARG 187 H GLY 188 n 198 GLY 188 H ASP 189 n 199 ASP 189 H ALA 190 n 200 ALA 190 H CYS 191 n 201 CYS 191 H GLU 192 n 202 GLU 192 H GLY 193 n 203 GLY 193 H ASP 194 n 204 ASP 194 H SER 195 n 205 SER 195 H GLY 196 n 206 GLY 196 H GLY 197 n 207 GLY 197 H PRO 198 n 208 PRO 198 H PHE 199 n 209 PHE 199 H VAL 200 n 210 VAL 200 H MET 201 n 211 MET 201 H LYS 202 n 212 LYS 202 H SER 203 n 213 SER 203 H PRO 204 n 214 PRO 204 H PHE 204 n 215 A PHE 204 H ASN 204 n 216 B ASN 204 H ASN 205 n 217 ASN 205 H ARG 206 n 218 ARG 206 H TRP 207 n 219 TRP 207 H TYR 208 n 220 TYR 208 H GLN 209 n 221 GLN 209 H MET 210 n 222 MET 210 H GLY 211 n 223 GLY 211 H ILE 212 n 224 ILE 212 H VAL 213 n 225 VAL 213 H SER 214 n 226 SER 214 H TRP 215 n 227 TRP 215 H GLY 216 n 228 GLY 216 H GLU 217 n 229 GLU 217 H GLY 219 n 230 GLY 219 H CYS 220 n 231 CYS 220 H ASP 221 n 232 ASP 221 H ARG 221 n 233 A ARG 221 H ASP 222 n 234 ASP 222 H GLY 223 n 235 GLY 223 H LYS 224 n 236 LYS 224 H TYR 225 n 237 TYR 225 H GLY 226 n 238 GLY 226 H PHE 227 n 239 PHE 227 H TYR 228 n 240 TYR 228 H THR 229 n 241 THR 229 H HIS 230 n 242 HIS 230 H VAL 231 n 243 VAL 231 H PHE 232 n 244 PHE 232 H ARG 233 n 245 ARG 233 H LEU 234 n 246 LEU 234 H LYS 235 n 247 LYS 235 H LYS 236 n 248 LYS 236 H TRP 237 n 249 TRP 237 H ILE 238 n 250 ILE 238 H GLN 239 n 251 GLN 239 H LYS 240 n 252 LYS 240 H VAL 241 n 253 VAL 241 H ILE 242 n 254 ILE 242 H ASP 243 n 255 ASP 243 H GLN 244 n 256 GLN 244 H PHE 245 n 257 PHE 245 H GLY 246 n 258 GLY 246 H GLU 247 n 259 GLU 247 H author_defined_assembly 3 trimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 H O GLU 39 C O GLU 25 H N ARG 35 C N ARG 20 H O PHE 34 C O PHE 19 H N LEU 65 C N LEU 60 H N ILE 68 C N ILE 63 H O LYS 81 C O LYS 77 H O SER 45 C O SER 31 H N LEU 53 C N LEU 39 H N THR 54 C N THR 40 H O ALA 104 C O ALA 101 H O LYS 107 C O LYS 104 H N GLU 86 C N GLU 82 A H O TYR 60 C O TYR 47 F H N LYS 60 C N LYS 52 1 H CL1 0G7 1 D CL1 0G7 1 1 N A 1 H THR 148 C THR 149 1 Y B 1 H ALA 148 C ALA 150 1 Y C 1 H ASN 148 C ASN 151 1 Y D 1 H VAL 148 C VAL 152 1 Y E 1 H GLY 148 C GLY 153 1 Y F 1 H LYS 148 C LYS 154 1 Y J L 1 L L O N TYR ASP 14 14 1.92 1 H H NZ O LYS ASN 36 62 1.93 B 1 H H O OG GLU SER 127 129 2.02 1 D D O4' N3 DT DT 407 409 2.07 1 H H NE2 O GLN THR 30 139 2.07 1 D D O6 N1 DG DG 402 414 2.12 I 1 H H O CB THR ASP 60 63 2.16 1 H H CB O CYS SER 42 195 2.16 1 D D N7 N2 DG DG 406 410 2.17 1 D D N2 N7 DG DG 402 405 2.19 K 1 L ILE 14 12.21 1 H LYS 36 -13.01 1 H ASP 63 13.49 1 H LEU 64 10.76 1 H LYS 81 10.54 1 H SER 153 10.77 1 H VAL 200 17.40 1 12.26 1.10 109.80 122.06 D D D C5' C4' O4' DG DG DG 401 401 401 N 1 -11.09 0.80 109.40 98.31 D D D O5' C5' C4' DG DG DG 402 402 402 N 1 -11.36 1.60 120.90 109.54 D D D P O5' C5' DG DG DG 402 402 402 N 1 -4.57 0.40 104.50 99.93 D D D O4' C4' C3' DG DG DG 402 402 402 N 1 -11.64 1.00 110.10 98.46 D D D C1' O4' C4' DG DG DG 402 402 402 N 1 -5.01 0.70 102.20 97.19 D D D C4' C3' C2' DG DG DG 402 402 402 N 1 23.84 1.20 119.70 143.54 D D D C3' O3' P DG DG DT 402 402 403 Y 1 -25.53 1.50 119.60 94.07 D D D OP1 P OP2 DT DT DT 403 403 403 N 1 7.24 1.20 110.70 117.94 D D D O5' P OP2 DT DT DT 403 403 403 N 1 17.20 2.00 112.30 129.50 D D D C4' C3' O3' DT DT DT 403 403 403 N 1 10.72 0.30 108.30 119.02 D D D O4' C1' N1 DT DT DT 403 403 403 N 1 -3.35 0.50 121.30 117.95 D D D C6 N1 C2 DT DT DT 403 403 403 N 1 4.50 0.60 114.60 119.10 D D D N1 C2 N3 DT DT DT 403 403 403 N 1 -5.32 0.60 127.20 121.88 D D D C2 N3 C4 DT DT DT 403 403 403 N 1 3.78 0.60 115.20 118.98 D D D N3 C4 C5 DT DT DT 403 403 403 N 1 -7.68 1.20 119.70 112.02 D D D C3' O3' P DT DT DT 403 403 404 Y 1 19.01 1.90 104.00 123.01 D D D O3' P O5' DT DT DT 403 404 404 Y 1 12.86 1.20 110.70 123.56 D D D O5' P OP1 DT DT DT 404 404 404 N 1 -7.52 0.90 105.70 98.18 D D D O5' P OP2 DT DT DT 404 404 404 N 1 21.07 1.60 120.90 141.97 D D D P O5' C5' DT DT DT 404 404 404 N 1 -9.37 0.40 104.50 95.13 D D D O4' C4' C3' DT DT DT 404 404 404 N 1 16.63 1.20 115.70 132.33 D D D C5' C4' C3' DT DT DT 404 404 404 N 1 -14.57 1.00 110.10 95.53 D D D C1' O4' C4' DT DT DT 404 404 404 N 1 17.26 2.00 112.30 129.56 D D D C4' C3' O3' DT DT DT 404 404 404 N 1 -4.44 0.70 102.20 97.76 D D D C4' C3' C2' DT DT DT 404 404 404 N 1 15.75 0.30 108.30 124.05 D D D O4' C1' N1 DT DT DT 404 404 404 N 1 -3.93 0.50 121.30 117.37 D D D C6 N1 C2 DT DT DT 404 404 404 N 1 4.44 0.60 114.60 119.04 D D D N1 C2 N3 DT DT DT 404 404 404 N 1 -5.42 0.60 127.20 121.78 D D D C2 N3 C4 DT DT DT 404 404 404 N 1 4.54 0.60 115.20 119.74 D D D N3 C4 C5 DT DT DT 404 404 404 N 1 -3.76 0.60 122.30 118.54 D D D N3 C2 O2 DT DT DT 404 404 404 N 1 22.17 1.20 119.70 141.87 D D D C3' O3' P DT DT DG 404 404 405 Y 1 8.18 1.10 110.50 118.68 D D D O3' P OP2 DT DG DG 404 405 405 Y 1 -7.44 0.90 105.70 98.26 D D D O5' P OP1 DG DG DG 405 405 405 N 1 8.27 1.20 115.70 123.97 D D D C5' C4' C3' DG DG DG 405 405 405 N 1 3.86 0.30 108.30 112.16 D D D O4' C1' N9 DG DG DG 405 405 405 N 1 23.01 1.20 119.70 142.71 D D D C3' O3' P DG DG DG 405 405 406 Y 1 -13.13 1.50 119.60 106.47 D D D OP1 P OP2 DG DG DG 406 406 406 N 1 17.42 1.60 120.90 138.32 D D D P O5' C5' DG DG DG 406 406 406 N 1 -12.08 1.90 112.60 100.52 D D D N9 C1' C2' DG DG DG 406 406 406 N 1 23.26 0.30 108.30 131.56 D D D O4' C1' N9 DG DG DG 406 406 406 N 1 -4.67 0.60 119.90 115.23 D D D N1 C6 O6 DG DG DG 406 406 406 N 1 8.98 1.20 110.70 119.68 D D D O5' P OP1 DT DT DT 407 407 407 N 1 -7.70 0.80 109.40 101.70 D D D O5' C5' C4' DT DT DT 407 407 407 N 1 8.82 1.20 115.70 124.52 D D D C5' C4' C3' DT DT DT 407 407 407 N 1 -9.96 1.00 110.10 100.14 D D D C1' O4' C4' DT DT DT 407 407 407 N 1 14.55 2.00 112.30 126.85 D D D C4' C3' O3' DT DT DT 407 407 407 N 1 -10.18 0.70 102.20 92.02 D D D C4' C3' C2' DT DT DT 407 407 407 N 1 -14.88 0.80 102.40 87.52 D D D C3' C2' C1' DT DT DT 407 407 407 N 1 -15.16 1.90 112.60 97.44 D D D N1 C1' C2' DT DT DT 407 407 407 N 1 -12.90 0.70 108.00 95.10 D D D O4' C1' N1 DT DT DT 407 407 407 N 1 3.65 0.50 121.30 124.95 D D D C6 N1 C2 DT DT DT 407 407 407 N 1 -4.48 0.60 127.20 122.72 D D D C2 N3 C4 DT DT DT 407 407 407 N 1 5.19 0.60 115.20 120.39 D D D N3 C4 C5 DT DT DT 407 407 407 N 1 -3.80 0.60 119.90 116.10 D D D N3 C4 O4 DT DT DT 407 407 407 N 1 7.65 1.20 110.70 118.35 D D D O5' P OP1 DG DG DG 408 408 408 N 1 -7.20 1.00 110.10 102.90 D D D C1' O4' C4' DG DG DG 408 408 408 N 1 11.99 1.20 119.70 131.69 D D D C3' O3' P DG DG DT 408 408 409 Y 1 -13.25 1.50 119.60 106.35 D D D OP1 P OP2 DT DT DT 409 409 409 N 1 10.36 1.20 110.70 121.06 D D D O5' P OP2 DT DT DT 409 409 409 N 1 2.27 0.30 108.30 110.57 D D D O4' C1' N1 DT DT DT 409 409 409 N 1 4.90 0.60 114.60 119.50 D D D N1 C2 N3 DT DT DT 409 409 409 N 1 -5.67 0.60 127.20 121.53 D D D C2 N3 C4 DT DT DT 409 409 409 N 1 12.47 1.20 119.70 132.17 D D D C3' O3' P DT DT DG 409 409 410 Y 1 -12.29 1.50 119.60 107.31 D D D OP1 P OP2 DG DG DG 410 410 410 N 1 -9.43 0.40 104.50 95.07 D D D O4' C4' C3' DG DG DG 410 410 410 N 1 -15.11 1.00 110.10 94.99 D D D C1' O4' C4' DG DG DG 410 410 410 N 1 13.81 0.30 108.30 122.11 D D D O4' C1' N9 DG DG DG 410 410 410 N 1 -2.82 0.40 106.40 103.58 D D D C8 N9 C4 DG DG DG 410 410 410 N 1 2.52 0.40 105.40 107.92 D D D N9 C4 C5 DG DG DG 410 410 410 N 1 -3.68 0.60 119.90 116.22 D D D N1 C6 O6 DG DG DG 410 410 410 N 1 -8.24 0.80 105.90 97.66 D D D O4' C1' C2' DG DG DG 411 411 411 N 1 14.34 0.30 108.30 122.64 D D D O4' C1' N9 DG DG DG 411 411 411 N 1 15.63 1.20 119.70 135.33 D D D C3' O3' P DG DG DT 411 411 412 Y 1 -14.09 1.50 119.60 105.51 D D D OP1 P OP2 DT DT DT 412 412 412 N 1 8.68 1.20 110.70 119.38 D D D O5' P OP1 DT DT DT 412 412 412 N 1 18.97 1.60 120.90 139.87 D D D P O5' C5' DT DT DT 412 412 412 N 1 18.01 0.30 108.30 126.31 D D D O4' C1' N1 DT DT DT 412 412 412 N 1 -4.77 0.60 127.20 122.43 D D D C2 N3 C4 DT DT DT 412 412 412 N 1 4.42 0.60 115.20 119.62 D D D N3 C4 C5 DT DT DT 412 412 412 N 1 29.42 1.20 119.70 149.12 D D D C3' O3' P DT DT DT 412 412 413 Y 1 -14.67 1.50 119.60 104.93 D D D OP1 P OP2 DT DT DT 413 413 413 N 1 17.14 1.60 120.90 138.04 D D D P O5' C5' DT DT DT 413 413 413 N 1 -2.90 0.40 104.50 101.60 D D D O4' C4' C3' DT DT DT 413 413 413 N 1 -7.00 0.80 105.90 98.90 D D D O4' C1' C2' DT DT DT 413 413 413 N 1 8.60 0.30 108.30 116.90 D D D O4' C1' N1 DT DT DT 413 413 413 N 1 -3.13 0.50 121.30 118.17 D D D C6 N1 C2 DT DT DT 413 413 413 N 1 4.78 0.60 114.60 119.38 D D D N1 C2 N3 DT DT DT 413 413 413 N 1 -5.42 0.60 127.20 121.78 D D D C2 N3 C4 DT DT DT 413 413 413 N 1 3.71 0.60 115.20 118.91 D D D N3 C4 C5 DT DT DT 413 413 413 N 1 -6.76 0.60 119.90 113.14 D D D N3 C4 O4 DT DT DT 413 413 413 N 1 -12.21 1.50 119.60 107.39 D D D OP1 P OP2 DG DG DG 414 414 414 N 1 -4.00 0.60 125.10 121.10 D D D C6 N1 C2 DG DG DG 414 414 414 N 1 4.33 0.50 111.50 115.83 D D D C5 C6 N1 DG DG DG 414 414 414 N 1 5.34 0.30 108.30 113.64 D D D O4' C1' N9 DG DG DG 415 415 415 N 1 -3.76 0.60 119.90 116.14 D D D N1 C6 O6 DG DG DG 415 415 415 N 1 -10.91 1.40 123.60 112.69 L L L CD NE CZ ARG ARG ARG 4 4 4 N 1 -5.59 0.50 120.30 114.71 L L L NE CZ NH1 ARG ARG ARG 4 4 4 N 1 5.22 0.50 120.30 125.52 L L L NE CZ NH2 ARG ARG ARG 4 4 4 N 1 24.15 2.50 121.70 145.85 L L L C N CA LYS SER SER 10 11 11 Y 1 -6.17 0.90 118.30 112.13 L L L CB CG OD1 ASP ASP ASP 14 14 14 N A 1 -13.61 2.20 117.20 103.59 L L L CA C N ASP ASP LYS 14 14 14 Y C C D 1 10.49 1.60 122.70 133.19 L L L O C N GLU GLU ARG 14 14 14 Y D D D 1 -8.23 1.10 119.40 111.17 L L L NH1 CZ NH2 ARG ARG ARG 14 14 14 N D D D 1 3.81 0.50 120.30 124.11 L L L NE CZ NH1 ARG ARG ARG 14 14 14 N D D D 1 4.28 0.50 120.30 124.58 L L L NE CZ NH2 ARG ARG ARG 14 14 14 N J J J 1 -13.54 2.10 120.10 106.56 L L L CA C O TYR TYR TYR 14 14 14 N 1 11.86 1.60 122.70 134.56 H H H O C N GLN GLN VAL 30 30 31 Y A 1 -10.05 1.60 122.70 112.65 H H H O C N LYS LYS SER 36 36 36 Y A A A 1 -12.20 1.90 110.10 97.90 H H H CB CA C SER SER SER 36 36 36 N 1 8.79 1.20 123.30 132.09 H H H OE1 CD OE2 GLU GLU GLU 39 39 39 N 1 -9.88 1.40 123.60 113.72 H H H CD NE CZ ARG ARG ARG 50 50 50 N 1 -4.04 0.50 120.30 116.26 H H H NE CZ NH1 ARG ARG ARG 50 50 50 N D D D 1 11.79 1.90 113.70 125.49 H H H CA CB CG TRP TRP TRP 60 60 60 N E E E 1 -8.00 0.90 118.30 110.30 H H H CB CG OD2 ASP ASP ASP 60 60 60 N F F F 1 11.93 1.80 110.60 122.53 H H H N CA CB LYS LYS LYS 60 60 60 N F F G 1 10.34 1.60 122.70 133.04 H H H O C N LYS LYS ASN 60 60 60 Y 1 3.55 0.50 120.30 123.85 H H H NE CZ NH1 ARG ARG ARG 67 67 67 N 1 -3.15 0.50 120.30 117.15 H H H NE CZ NH2 ARG ARG ARG 67 67 67 N 1 3.53 0.50 120.30 123.83 H H H NE CZ NH1 ARG ARG ARG 73 73 73 N 1 9.00 1.40 123.60 132.60 H H H CD NE CZ ARG ARG ARG 75 75 75 N 1 5.40 0.50 120.30 125.70 H H H NE CZ NH1 ARG ARG ARG 75 75 75 N A A A 1 3.94 0.50 120.30 124.24 H H H NE CZ NH2 ARG ARG ARG 77 77 77 N 1 19.45 2.20 113.40 132.85 H H H CA CB CG GLU GLU GLU 86 86 86 N 1 11.92 1.90 113.40 125.32 H H H CA CB CG TYR TYR TYR 89 89 89 N 1 16.22 1.90 113.70 129.92 H H H CA CB CG TRP TRP TRP 96 96 96 N 1 9.62 1.40 123.60 133.22 H H H CD NE CZ ARG ARG ARG 97 97 97 N 1 -7.01 1.10 119.40 112.39 H H H NH1 CZ NH2 ARG ARG ARG 97 97 97 N 1 5.27 0.50 120.30 125.57 H H H NE CZ NH1 ARG ARG ARG 97 97 97 N A A A 1 -7.89 1.20 123.30 115.41 H H H OE1 CD OE2 GLU GLU GLU 97 97 97 N 1 11.12 1.40 123.60 134.72 H H H CD NE CZ ARG ARG ARG 101 101 101 N 1 -9.85 1.10 119.40 109.55 H H H NH1 CZ NH2 ARG ARG ARG 101 101 101 N 1 14.69 0.50 120.30 134.99 H H H NE CZ NH1 ARG ARG ARG 101 101 101 N 1 -5.00 0.50 120.30 115.30 H H H NE CZ NH2 ARG ARG ARG 101 101 101 N 1 5.43 0.90 118.30 123.73 H H H CB CG OD1 ASP ASP ASP 102 102 102 N 1 -10.66 1.60 122.70 112.04 H H H O C N LEU LEU MET 105 105 106 Y 1 -11.78 1.60 122.70 110.92 H H H O C N ASP ASP TYR 116 116 117 Y 1 12.64 1.90 110.20 122.84 H H H CB CA C LEU LEU LEU 123 123 123 N 1 6.12 0.90 118.30 124.42 H H H CB CG OD1 ASP ASP ASP 125 125 125 N 1 3.89 0.50 120.30 124.19 H H H NE CZ NH1 ARG ARG ARG 126 126 126 N 1 -6.91 0.50 120.30 113.39 H H H NE CZ NH2 ARG ARG ARG 126 126 126 N 1 9.44 1.20 123.30 132.74 H H H OE1 CD OE2 GLU GLU GLU 127 127 127 N A B B 1 15.25 2.50 121.70 136.95 H H H C N CA ALA SER SER 129 129 129 Y B B B 1 -13.48 1.50 110.50 97.02 H H H N CA CB SER SER SER 129 129 129 N 1 17.81 2.10 122.30 140.11 H H H C N CA LYS GLY GLY 135 136 136 Y 1 8.60 1.40 123.60 132.20 H H H CD NE CZ ARG ARG ARG 137 137 137 N 1 5.15 0.50 120.30 125.45 H H H NE CZ NH1 ARG ARG ARG 137 137 137 N 1 7.49 1.20 111.50 118.99 H H H CB CA C CYS CYS CYS 168 168 168 N 1 3.08 0.50 120.30 123.38 H H H NE CZ NH1 ARG ARG ARG 175 175 175 N 1 12.43 2.00 110.40 122.83 H H H CB CA C LYS LYS LYS 185 185 185 N 1 3.71 0.50 120.30 124.01 H H H NE CZ NH2 ARG ARG ARG 187 187 187 N 1 18.09 2.10 122.30 140.39 H H H C N CA GLY GLY GLY 196 197 197 Y 1 3.11 0.50 120.30 123.41 H H H NE CZ NH2 ARG ARG ARG 206 206 206 N A A A 1 3.48 0.50 120.30 123.78 H H H NE CZ NH2 ARG ARG ARG 221 221 221 N 1 12.35 2.00 110.40 122.75 H H H CB CA C TYR TYR TYR 225 225 225 N 1 4.29 0.50 120.30 124.59 H H H NE CZ NH1 ARG ARG ARG 233 233 233 N 1 -6.73 0.90 118.30 111.57 H H H CB CG OD1 ASP ASP ASP 243 243 243 N 1 D D O4' C1' DG DG 401 401 0.081 0.011 1.420 1.501 N 1 D D O4' C1' DG DG 402 402 0.075 0.011 1.420 1.495 N 1 D D O4' C4' DT DT 404 404 0.074 0.009 1.449 1.523 N 1 D D P O5' DG DG 405 405 0.063 0.010 1.593 1.656 N 1 D D C3' C2' DT DT 407 407 0.110 0.012 1.518 1.628 N 1 D D O4' C1' DG DG 408 408 0.078 0.011 1.420 1.498 N 1 D D O4' C1' DT DT 413 413 0.079 0.011 1.420 1.499 N F E 1 L L C N GLY SER 1 1 0.173 0.023 1.336 1.509 Y G 1 L PHE 1 -41.87 -158.66 E 1 L SER 1 44.30 22.08 B 1 L ALA 1 178.61 -39.33 1 L PHE 7 -125.73 -73.41 1 L LYS 9 -47.61 -7.69 1 L SER 11 38.08 38.84 A 1 L LYS 14 -29.97 -65.61 D 1 L ARG 14 -54.70 -7.81 G 1 L LEU 14 -51.70 2.97 J 1 L TYR 14 -66.98 90.08 K 1 L ILE 14 -33.82 87.75 L 1 L ASP 14 70.14 98.53 1 H GLU 18 36.64 68.73 1 H SER 20 -171.73 103.64 1 H ASP 21 -26.00 111.78 1 H ARG 50 -169.01 11.53 1 H THR 54 -118.37 -168.71 1 H LEU 59 -142.41 -10.37 G 1 H ASN 60 -160.22 83.48 1 H GLU 61 -25.38 -69.69 1 H HIS 71 -142.36 -53.10 A 1 H ARG 77 -26.70 -56.25 1 H ILE 79 -91.52 -64.17 1 H ASN 98 -160.13 60.57 1 H LEU 99 36.57 46.03 1 H ALA 104 -176.60 137.11 1 H PHE 114 -108.82 43.66 1 H ASP 116 25.22 9.88 1 H TYR 117 -164.59 -0.80 1 H PRO 124 -45.55 162.19 1 H GLU 127 -54.75 -70.85 1 H LEU 130 -69.21 42.68 1 H ASN 143 -36.94 146.07 1 H PRO 166 -60.95 1.62 1 H CYS 168 -67.89 8.50 1 H LYS 169 -101.70 -68.64 1 H ASP 170 -76.65 23.74 1 H ILE 174 -43.66 153.33 1 H ASP 178 -72.60 21.32 A 1 H ASP 186 -94.69 54.14 B 1 H GLU 186 -160.11 61.34 1 H SER 195 -31.38 143.13 1 H TRP 215 -168.08 -161.71 1 H GLU 217 -102.18 66.00 1 H CYS 220 -29.61 120.93 1 H ASP 222 -68.94 99.27 1 H HIS 230 -56.52 80.40 1 H ARG 233 -50.25 9.63 1 H LEU 234 -144.83 -1.30 1 H ILE 238 -67.82 -79.41 0.159 0.159 2.9 6806 1 2.9 130 2815 30 315 2340 0.02 3.3 2.87 1HUT 6990 1 refinement X-PLOR ALPHA-THROMBIN (E.C.3.4.21.5)/DNA, PPACK PEPTIDE THE STRUCTURE OF ALPHA-THROMBIN INHIBITED BY A 15-MER SINGLE-STRANDED DNA APTAMER 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N H ASP 125 C ASP 122 HELX_P H LEU 130 C LEU 130 1 4 9 H GLU 164 C GLU 169 HELX_P H LYS 169 C LYS 174 1 5 6 H LEU 234 C LEU 246 HELX_P H PHE 245 C PHE 257 1 6 12 disulf 2.025 L CYS 1 B SG CYS 9 1_555 H CYS 122 C SG CYS 119 1_555 disulf 2.023 H CYS 42 C SG CYS 28 1_555 H CYS 58 C SG CYS 44 1_555 disulf 2.003 H CYS 168 C SG CYS 173 1_555 H CYS 182 C SG CYS 187 1_555 disulf 2.016 H CYS 191 C SG CYS 201 1_555 H CYS 220 C SG CYS 231 1_555 hydrog TYPE_6_PAIR D DG 401 A N7 DG 1 1_555 D DG 406 A N2 DG 6 1_555 hydrog TYPE_6_PAIR D DG 401 A O6 DG 1 1_555 D DG 406 A N1 DG 6 1_555 hydrog TYPE_6_PAIR D DG 401 A N1 DG 1 1_555 D DG 415 A O6 DG 15 1_555 hydrog TYPE_6_PAIR D DG 401 A N2 DG 1 1_555 D DG 415 A N7 DG 15 1_555 hydrog DG-DG MISPAIR D DG 402 A N1 DG 2 1_555 D DG 405 A O6 DG 5 1_555 hydrog DG-DG MISPAIR D DG 402 A O6 DG 2 1_555 D DG 414 A N2 DG 14 1_555 hydrog DG-DG MISPAIR D DG 405 A N1 DG 5 1_555 D DG 411 A O6 DG 11 1_555 hydrog DG-DG MISPAIR D DG 406 A O6 DG 6 1_555 D DG 410 A N1 DG 10 1_555 hydrog DG-DG MISPAIR D DG 410 A N7 DG 10 1_555 D DG 415 A N2 DG 15 1_555 hydrog TYPE_6_PAIR D DG 411 A N1 DG 11 1_555 D DG 414 A O6 DG 14 1_555 hydrog TYPE_6_PAIR D DG 411 A N2 DG 11 1_555 D DG 414 A N7 DG 14 1_555 HYDROLASE/HYDROLASE INHIBITOR/DNA THROMBIN, BLOOD CLOTTING, HYDROLASE-HYDROLASE INHIBITOR-DNA COMPLEX H SER 36 C SER 22 A 1 H PRO 37 C PRO 23 -4.89 THRB_HUMAN UNP 2 328 P00734 TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR THRB_HUMAN UNP 3 364 P00734 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE 1HUT PDB 1 1 1HUT GGTTGGTGTGGTTGG 328 363 1HUT 1 15 P00734 H L 1 1 36 364 622 1HUT 16 247 P00734 H 2 1 259 401 415 1HUT 401 415 1HUT D 3 1 15 4 4 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel H GLU 39 C GLU 25 H LEU 40 C LEU 26 H LEU 33 C LEU 18 H ARG 35 C ARG 20 H LEU 64 C LEU 59 H ILE 68 C ILE 63 H LYS 81 C LYS 77 H SER 83 C SER 79 H SER 45 C SER 31 H LEU 46 C LEU 32 H TRP 51 C TRP 37 H THR 54 C THR 40 H ALA 104 C ALA 101 H LEU 108 C LEU 105 H LEU 85 C LEU 81 H ILE 90 C ILE 86 H LEU 60 C LEU 46 H TYR 60 C TYR 47 A H LYS 60 C LYS 52 H ASN 60 C ASN 53 F G BINDING SITE FOR RESIDUE 0G7 H 1 Software 14 CATALYTIC SITE Author 3 H HIS 57 C HIS 43 14 1_555 H TYR 60 C TYR 47 A 14 1_555 H TRP 60 C TRP 50 D 14 1_555 H ASN 98 C ASN 95 14 1_555 H LEU 99 C LEU 96 14 1_555 H ILE 174 C ILE 179 14 1_555 H ASP 189 C ASP 199 14 1_555 H ALA 190 C ALA 200 14 1_555 H CYS 191 C CYS 201 14 1_555 H SER 195 C SER 205 14 1_555 H SER 214 C SER 226 14 1_555 H TRP 215 C TRP 227 14 1_555 H GLY 216 C GLY 228 14 1_555 H CYS 220 C CYS 231 14 1_555 H HIS 57 C HIS 43 3 1_555 H ASP 102 C ASP 99 3 1_555 H SER 195 C SER 205 3 1_555 19 orthorhombic P 21 21 21